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Maria Costanzo

Research Profile

Genes & Molecular Sequences

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Molecular Sequence Annotation

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Publications

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Julie Park; Rama Balakrishnan; J Michael Cherry; Maria C Costanzo; Eurie L Hong
CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
Maria C Costanzo; Julie Park; Rama Balakrishnan; J Michael Cherry; Eurie L Hong
Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
Stacia R Engel; Rama Balakrishnan; Gail Binkley; Karen R Christie; Maria C Costanzo; Selina S Dwight; Dianna G Fisk; Jodi E Hirschman; Benjamin C Hitz; Eurie L Hong; Cynthia J Krieger; Michael S Livstone; Stuart R Miyasato; Robert Nash; Rose Oughtred; Julie Park; Marek S Skrzypek; Shuai Weng; Edith D Wong; Kara Dolinski; David Botstein; J Michael Cherry
Saccharomyces Genome Database provides mutant phenotype data.

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All Publications

2012: Julie Park; Rama Balakrishnan; J Michael Cherry; Maria C Costanzo; Eurie L Hong
CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
Database : the journal of biological databases and curation 2012;2012():bas001.
2011: Maria C Costanzo; Julie Park; Rama Balakrishnan; J Michael Cherry; Eurie L Hong
Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
Database : the journal of biological databases and curation 2011;2011():bar004.
2010: Stacia R Engel; Rama Balakrishnan; Gail Binkley; Karen R Christie; Maria C Costanzo; Selina S Dwight; Dianna G Fisk; Jodi E Hirschman; Benjamin C Hitz; Eurie L Hong; Cynthia J Krieger; Michael S Livstone; Stuart R Miyasato; Robert Nash; Rose Oughtred; Julie Park; Marek S Skrzypek; Shuai Weng; Edith D Wong; Kara Dolinski; David Botstein; J Michael Cherry
Saccharomyces Genome Database provides mutant phenotype data.
Nucleic acids research 2010;38(Database issue):D433-6.
2010: Marek S Skrzypek; Martha B Arnaud; Maria C Costanzo; Diane O Inglis; Prachi Shah; Gail Binkley; Stuart R Miyasato; Gavin Sherlock
New tools at the Candida Genome Database: biochemical pathways and full-text literature search.
Nucleic acids research 2010;38(Database issue):D428-32.
2010: Martha B Arnaud; Marcus Chibucos; Maria C Costanzo; Jonathan Crabtree; Diane O Inglis; Adil Lotia; Joshua Orvis; Prachi Shah; Marek S Skrzypek; Gail Binkley; Stuart R Miyasato; Jennifer Wortman; Gavin Sherlock
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community.
Nucleic acids research 2010;38(Database issue):D420-7.
2009: Martha B Arnaud; Maria C Costanzo; Prachi Shah; Marek S Skrzypek; Gavin Sherlock
Gene Ontology and the annotation of pathogen genomes: the case of Candida albicans.
Trends in microbiology 2009;17(7):295-303.
2008: Eurie L Hong; Rama Balakrishnan; Qing Dong; Karen R Christie; Julie Park; Gail Binkley; Maria C Costanzo; Selina S Dwight; Stacia R Engel; Dianna G Fisk; Jodi E Hirschman; Benjamin C Hitz; Cynthia J Krieger; Michael S Livstone; Stuart R Miyasato; Robert S Nash; Rose Oughtred; Marek S Skrzypek; Shuai Weng; Edith D Wong; Kathy K Zhu; Kara Dolinski; David Botstein; J Michael Cherry
Gene Ontology annotations at SGD: new data sources and annotation methods.
Nucleic acids research 2008;36(Database issue):D577-81.
2007: Robert Nash; Shuai Weng; Ben Hitz; Rama Balakrishnan; Karen R Christie; Maria C Costanzo; Selina S Dwight; Stacia R Engel; Dianna G Fisk; Jodi E Hirschman; Eurie L Hong; Michael S Livstone; Rose Oughtred; Julie Park; Marek S Skrzypek; Chandra L Theesfeld; Gail Binkley; Qing Dong; Christopher Lane; Stuart R Miyasato; Anand Sethuraman; Mark Schroeder; Kara Dolinski; David Botstein; J Michael Cherry
Expanded protein information at SGD: new pages and proteome browser.
Nucleic acids research 2007;35(Database issue):D468-71.
2007: Martha B Arnaud; Maria C Costanzo; Marek S Skrzypek; Prachi Shah; Gail Binkley; Christopher Lane; Stuart R Miyasato; Gavin Sherlock
Sequence resources at the Candida Genome Database.
Nucleic acids research 2007;35(Database issue):D452-6.
2006: Maria C Costanzo; Martha B Arnaud; Marek S Skrzypek; Gail Binkley; Christopher Lane; Stuart R Miyasato; Gavin Sherlock
The Candida Genome Database: facilitating research on Candida albicans molecular biology.
FEMS yeast research 2006;6(5):671-84.
2006: Jodi E Hirschman; Rama Balakrishnan; Karen R Christie; Maria C Costanzo; Selina S Dwight; Stacia R Engel; Dianna G Fisk; Eurie L Hong; Michael S Livstone; Robert Nash; Julie Park; Rose Oughtred; Marek S Skrzypek; Barry Starr; Chandra L Theesfeld; Jennifer Williams; Rey Andrada; Gail Binkley; Qing Dong; Christopher Lane; Stuart R Miyasato; Anand Sethuraman; Mark Schroeder; Mayank K Thanawala; Shuai Weng; Kara Dolinski; David Botstein; J Michael Cherry
Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.
Nucleic acids research 2006;34(Database issue):D442-5.
2005: Rama Balakrishnan; Karen R Christie; Maria C Costanzo; Kara Dolinski; Selina S Dwight; Stacia R Engel; Dianna G Fisk; Jodi E Hirschman; Eurie L Hong; Robert Nash; Rose Oughtred; Marek S Skrzypek; Chandra L Theesfeld; Gail Binkley; Qing Dong; Christopher Lane; Anand Sethuraman; Shuai Weng; David Botstein; J Michael Cherry
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).
Nucleic acids research 2005;33(Database issue):D374-7.
2005: Martha B Arnaud; Maria C Costanzo; Marek S Skrzypek; Gail Binkley; Christopher Lane; Stuart R Miyasato; Gavin Sherlock
The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information.
Nucleic acids research 2005;33(Database issue):D358-63.
2004: Selina S Dwight; Rama Balakrishnan; Karen R Christie; Maria C Costanzo; Kara Dolinski; Stacia R Engel; Becket Feierbach; Dianna G Fisk; Jodi E Hirschman; Eurie L Hong; Laurie Issel-Tarver; Robert S Nash; Anand Sethuraman; Barry Starr; Chandra L Theesfeld; Rey Andrada; Gail Binkley; Qing Dong; Christopher Lane; Mark Schroeder; Shuai Weng; David Botstein; J Michael Cherry
Saccharomyces genome database: underlying principles and organisation.
Briefings in bioinformatics 2004;5(1):9-22.
2004: Karen R Christie; Shuai Weng; Rama Balakrishnan; Maria C Costanzo; Kara Dolinski; Selina S Dwight; Stacia R Engel; Becket Feierbach; Dianna G Fisk; Jodi E Hirschman; Eurie L Hong; Laurie Issel-Tarver; Robert Nash; Anand Sethuraman; Barry Starr; Chandra L Theesfeld; Rey Andrada; Gail Binkley; Qing Dong; Christopher Lane; Mark Schroeder; David Botstein; J Michael Cherry
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
Nucleic acids research 2004;32(Database issue):D311-4.
2002: Csilla Csank; Maria C Costanzo; Jodi E Hirschman; Peter Hodges; Janice E Kranz; Mary Mangan; Kathy O'Neill; Laura S Robertson; Marek S Skrzypek; Joan Brooks; James I Garrels
Three yeast proteome databases: YPD, PombePD, and CalPD (MycoPathPD).
Methods in enzymology 2002;350():347-73.
2001: Maria C Costanzo; M E Crawford; Jodi E Hirschman; J E Kranz; P Olsen; L S Robertson; Marek S Skrzypek; B R Braun; K L Hopkins; P Kondu; C Lengieza; J E Lew-Smith; M Tillberg; James I Garrels
YPD, PombePD and WormPD: model organism volumes of the BioKnowledge library, an integrated resource for protein information.
Nucleic acids research 2001;29(1):75-9.
2000: Maria C Costanzo; Jennifer Hogan; M E Cusick; Brian P Davis; A M Fancher; Peter E Hodges; P Kondu; C Lengieza; J E Lew-Smith; C Lingner; K J Roberg-Perez; M Tillberg; J E Brooks; James I Garrels
The yeast proteome database (YPD) and Caenorhabditis elegans proteome database (WormPD): comprehensive resources for the organization and comparison of model organism protein information.
Nucleic acids research 2000;28(1):73-6.