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David Cutler

Research Profile

Genes & Molecular Sequences

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Physiology

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Henry R Johnston; David J Cutler
A comprehensive search for recombinogenic motifs in the human genome.
Henry R Johnston; David J Cutler
Population demographic history can cause the appearance of recombination hotspots.
Yasminka A Jakubek; David J Cutler
A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays.

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All Publications

2013: Henry R Johnston; David J Cutler
A comprehensive search for recombinogenic motifs in the human genome.
PloS one 2013;8(4):e62920.
2012: Henry R Johnston; David J Cutler
Population demographic history can cause the appearance of recombination hotspots.
American journal of human genetics 2012;90(5):774-83.
2012: Yasminka A Jakubek; David J Cutler
A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays.
BMC genomics 2012;13():737.
2012: Karyn Meltz Steinberg; David J Cutler; Viren C Patel; Dhanya Ramachandran; Amol C Shetty; Michael E Zwick
Identification of rare X-linked neuroligin variants by massively parallel sequencing in males with autism spectrum disorder.
Molecular autism 2012;3(1):8.
2012: Cornel J Phillip; Birdal Bilir; David J Cutler; Christopher K Giardina; Omer Kucuk; Yu-Heng Lai; Carlos S Moreno
Genistein cooperates with the histone deacetylase inhibitor vorinostat to induce cell death in prostate cancer cells.
BMC cancer 2012;12():145.
2012: Miao Sun; Tamara Caspary; David J Cutler; Vanessa L Horner; Alyssa B Long; Kajari Mondal; Viren Patel; Zwick Michael
Multiplex Chromosomal Exome Sequencing Accelerates Identification of ENU-Induced Mutations in the Mouse.
G3 (Bethesda, Md.) 2012;2(1):143-50.
2012: Thomas S Wingo; Ami Rosen; David J Cutler; James J Lah; Allan Levey
Paraoxonase-1 polymorphisms in Alzheimer's disease, Parkinson's disease, and AD-PD spectrum diseases.
Neurobiology of aging 2012;33(1):204.e13-5.
2010: Stephen C Collins; Steven M Bray; Joshua A Suhl; David J Cutler; Bradford Coffee; Zwick Michael; Stephen Warren
Identification of novel FMR1 variants by massively parallel sequencing in developmentally delayed males.
American journal of medical genetics. Part A 2010;152A(10):2512-20.
2010: Jennifer Gladys Mulle; Anne F Dodd; John A McGrath; Paula S Wolyniec; Adele A Mitchell; Amol C Shetty; Nara L Sobreira; David Valle; M Katharine Rudd; Glen Satten; David J Cutler; Ann E Pulver; Stephen Warren
Microdeletions of 3q29 confer high risk for schizophrenia.
American journal of human genetics 2010;87(2):229-36.
2010: Amol Carl Shetty; Prashanth Athri; Kajari Mondal; Vanessa L Horner; Karyn Meltz Steinberg; Viren Patel; Tamara Caspary; David J Cutler; Zwick Michael
SeqAnt: a web service to rapidly identify and annotate DNA sequence variations.
BMC bioinformatics 2010;11():471.
2010: Jennifer Gladys Mulle; Viren C Patel; Stephen Warren; Madhuri R Hegde; David J Cutler; Zwick Michael
Empirical evaluation of oligonucleotide probe selection for DNA microarrays.
PloS one 2010;5(3):e9921.
2010: Stephen C Collins; Brad Coffee; Paul J Benke; Elizabeth Berry-Kravis; Fred Gilbert; Ben Oostra; Dicky Halley; Zwick Michael; David J Cutler; Stephen Warren
Array-based FMR1 sequencing and deletion analysis in patients with a fragile X syndrome-like phenotype.
PloS one 2010;5(3):e9476.
2009: Kathryn E McDougal; MARGARET D FALLIN; David R Moller; ZHIMIN SONG; David J Cutler; Lori L Steiner; Garry R Cutting
Variation in the lymphotoxin-alpha/tumor necrosis factor locus modifies risk of erythema nodosum in sarcoidosis.
The Journal of investigative dermatology 2009;129(8):1921-6.
2009: Amanda E Carney; Rebecca D Sanders; Kerry R Garza; Lee Anne McGaha; Lora J H Bean; Bradford W Coffee; James W Thomas; David J Cutler; Natalie L Kurtkaya; Judith L Fridovich-Keil
Origins, distribution and expression of the Duarte-2 (D2) allele of galactose-1-phosphate uridylyltransferase.
Human molecular genetics 2009;18(9):1624-32.
2009: Virginia L Willour; H Chen; J Toolan; Pamela Lynn Belmonte Mahon; David J Cutler; Fernando S Goes; Peter P Zandi; R S Lee; Dean F MacKinnon; Francis M Mondimore; Barbara Schweizer; J. Raymond DePaulo; Elliot S Gershon; Francis McMajon; James B Potash
Family-based association of FKBP5 in bipolar disorder.
Molecular psychiatry 2009;14(3):261-8.
2008: Lindsay A Bremer; SCOTT BLACKMAN; Lori L Vanscoy; Kathryn E McDougal; Amanda Bowers; Kathleen M Naughton; David J Cutler; Garry R Cutting
Interaction between a novel TGFB1 haplotype and CFTR genotype is associated with improved lung function in cystic fibrosis.
Human molecular genetics 2008;17(14):2228-37.
2008: Shin Lin; Benilton Carvalho; David J Cutler; Dan E Arking; Aravinda Chakravarti; Rafael A Irizarry
Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays.
Genome biology 2008;9(4):R63.
2008: Dan E Arking; David J Cutler; Camille W. Brune; Tanya M Teslovich; Kristen West; Morna Ikeda; Alexis Rea; Moltu Guy; Shin Lin; Edwin H Cook; Aravinda Chakravarti
A common genetic variant in the neurexin superfamily member CNTNAP2 increases familial risk of autism.
American journal of human genetics 2008;82(1):160-4.
2007: Ranjana Verma; David J Cutler; Peter Holmans; James A Knowles; Raymond R Crowe; William A Scheftner; Myrna M Weissman; J. Raymond DePaulo; Douglas F Levinson; James B Potash
Investigating the role of p11 (S100A10) sequence variation in susceptibility to major depression.
American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2007;144B(8):1079-82.
2007: David T Okou; Karyn Meltz Steinberg; Christina Middle; David J Cutler; Thomas J Albert; Zwick Michael
Microarray-based genomic selection for high-throughput resequencing.
Nature methods 2007;4(11):907-9.
2007: Jared R Kohler; David J Cutler
Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies.
American journal of human genetics 2007;81(4):684-99.
2007: Adrian Gherman; Peter E Chen; Tanya M Teslovich; Pawel Stankiewicz; Marjorie Withers; Carl S Kashuk; Aravinda Chakravarti; James R Lupski; David J Cutler; Nicholas Katsanis
Population bottlenecks as a potential major shaping force of human genome architecture.
PLoS genetics 2007;3(7):e119.
2006: SCOTT BLACKMAN; Rebecca Deering-Brose; Rita McWilliams; Kathleen Naughton; Barbara Coleman; Teresa Lai; Marilyn Algire; Suzanne Beck; Julie E Hoover-Fong; Ada Hamosh; MARGARET D FALLIN; Kristen West; Dan E Arking; Aravinda Chakravarti; David J Cutler; Garry R Cutting
Relative contribution of genetic and nongenetic modifiers to intestinal obstruction in cystic fibrosis.
Gastroenterology 2006;131(4):1030-9.
2006: Shaoyu Zhou; Keyaunoosh Kassauei; David J Cutler; Giulia C Kennedy; David Sidransky; Anirban Maitra; Joseph A Califano
An oligonucleotide microarray for high-throughput sequencing of the mitochondrial genome.
The Journal of molecular diagnostics : JMD 2006;8(4):476-82.
2005: Anirban Maitra; Dan E Arking; Narayan Shivapurkar; Morna Ikeda; Victor Stastny; Keyaunoosh Kassauei; Guoping Sui; David J Cutler; Ying Liu; Sandii N Brimble; Karin Noaksson; Johan Hyllner; Thomas C Schulz; Xianmin Zeng; William J Freed; Jeremy Crook; Suman Abraham; Alan Colman; Peter Sartipy; Sei-Ichi Matsui; Melissa Carpenter; Adi F Gazdar; Mahendra S Rao; Aravinda Chakravarti
Genomic alterations in cultured human embryonic stem cells.
Nature genetics 2005;37(10):1099-103.
2005: Adele A Mitchell; Aravinda Chakravarti; David J Cutler
On the probability that a novel variant is a disease-causing mutation.
Genome research 2005;15(7):960-6.
2005: Eileen Sproat Emison; Andy McCallion; Carl S Kashuk; Richard T Bush; Elizabeth A Grice; Shin Lin; Matthew E Portnoy; David J Cutler; Eric Green; Aravinda Chakravarti
A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk.
Nature 2005;434(7035):857-63.
2005: Zwick Michael; Farrell Mcafee; David J Cutler; Timothy D Read; Jacques Ravel; Gregory R Bowman; Darrell R Galloway; Alfred Mateczun
Microarray-based resequencing of multiple Bacillus anthracis isolates.
Genome biology 2005;6(1):R10.
2004: Shin Lin; Aravinda Chakravarti; David J Cutler
Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies.
Nature genetics 2004;36(11):1181-8.
2004: Shin Lin; Aravinda Chakravarti; David J Cutler
Haplotype and missing data inference in nuclear families.
Genome research 2004;14(8):1624-32.
2004: Adele A Mitchell; Zwick Michael; Aravinda Chakravarti; David J Cutler
Discrepancies in dbSNP confirmation rates and allele frequency distributions from varying genotyping error rates and patterns.
Bioinformatics (Oxford, England) 2004;20(7):1022-32.
2003: Jose L Badano; Jun Chul Kim; Bethan E Hoskins; Richard Alan Lewis; Stephen J Ansley; David J Cutler; Claudio Castellan; Philip L Beales; Michel R Leroux; Nicholas Katsanis
Heterozygous mutations in BBS1, BBS2 and BBS6 have a potential epistatic effect on Bardet-Biedl patients with two mutations at a second BBS locus.
Human molecular genetics 2003;12(14):1651-9.
2003: Adele A Mitchell; David J Cutler; Aravinda Chakravarti
Undetected genotyping errors cause apparent overtransmission of common alleles in the transmission/disequilibrium test.
American journal of human genetics 2003;72(3):598-610.
2002: Shin Lin; David J Cutler; Zwick Michael; Aravinda Chakravarti
Haplotype inference in random population samples.
American journal of human genetics 2002;71(5):1129-37.
2001: David J Cutler; Zwick Michael; Minerva M Carrasquillo; Chris T Yohn; K P Tobin; Carl S Kashuk; Debra J H Mathews; Nila A Shah; Evan E Eichler; J A Warrington; Aravinda Chakravarti
High-throughput variation detection and genotyping using microarrays.
Genome research 2001;11(11):1913-25.
2000: David J Cutler
Estimating divergence times in the presence of an overdispersed molecular clock.
Molecular biology and evolution 2000;17(11):1647-60.
2000: David J Cutler
The index of dispersion of molecular evolution: slow fluctuations.
Theoretical population biology 2000;57(2):177-86.
2000: David J Cutler
Understanding the overdispersed molecular clock.
Genetics 2000;154(3):1403-17.
2000: Zwick Michael; David J Cutler; Aravinda Chakravarti
Patterns of genetic variation in Mendelian and complex traits.
Annual review of genomics and human genetics 2000;1():387-407.
1999: Zwick Michael; David J Cutler; Charles H Langley
Classic Weinstein: tetrad analysis, genetic variation and achiasmate segregation in Drosophila and humans.
Genetics 1999;152(4):1615-29.