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Hongyue Dai

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Oligonucleotide Array Sequence Analysis

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Irena Ivanovska; Nikki P Lee; Patrick Lewis; Angela M Liu; John M Luk; Mao Mao; Ulrike Philippar; Ronnie T P Poon; Martin Scott; Kwong F Wong; Chunsheng Zhang; Dimple Bansal; Carolyn Buser; Michele A Cleary; Sheung-Tat Fan; Hongyue Dai
Gene signatures derived from a c-MET-driven liver cancer mouse model predict survival of patients with hepatocellular carcinoma.
Michael A Gentile; Pascale V Nantermet; Robert L Vogel; Robert Phillips; Daniel Holder; Paul Hodor; Chun Cheng; Hongyue Dai; Leonard P Freedman; William J Ray
Androgen-mediated improvement of body composition and muscle function involves a novel early transcriptional program including IGF1, mechano growth factor, and induction of {beta}-catenin.
Sven Duenwald; Mingjie Zhou; Yanqun Wang; Serguei Lejnine; Amit Kulkarni; Jaime Graves; Ryan Smith; John Castle; George Tokiwa; Bernard Fine; Hongyue Dai; Thomas Fare; Matthew Marton
Development of a microarray platform for FFPET profiling: application to the classification of human tumors.

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All Publications

2011: Irena Ivanovska; Nikki P Lee; Patrick Lewis; Angela M Liu; John M Luk; Mao Mao; Ulrike Philippar; Ronnie T P Poon; Martin Scott; Kwong F Wong; Chunsheng Zhang; Dimple Bansal; Carolyn Buser; Michele A Cleary; Sheung-Tat Fan; Hongyue Dai
Gene signatures derived from a c-MET-driven liver cancer mouse model predict survival of patients with hepatocellular carcinoma.
PloS one 2011;6(9):e24582.
2010: Michael A Gentile; Pascale V Nantermet; Robert L Vogel; Robert Phillips; Daniel Holder; Paul Hodor; Chun Cheng; Hongyue Dai; Leonard P Freedman; William J Ray
Androgen-mediated improvement of body composition and muscle function involves a novel early transcriptional program including IGF1, mechano growth factor, and induction of {beta}-catenin.
Journal of molecular endocrinology 2010;44(1):55-73.
2009: Sven Duenwald; Mingjie Zhou; Yanqun Wang; Serguei Lejnine; Amit Kulkarni; Jaime Graves; Ryan Smith; John Castle; George Tokiwa; Bernard Fine; Hongyue Dai; Thomas Fare; Matthew Marton
Development of a microarray platform for FFPET profiling: application to the classification of human tumors.
Journal of translational medicine 2009;7():65.
2008: Christopher Wright; Donald Bergstrom; Hongyue Dai; Matthew Marton; Mark Morris; George Tokiwa; Yanqun Wang; Thomas L Fare
Characterization of globin RNA interference in gene expression profiling of whole-blood samples.
Clinical chemistry 2008;54(2):396-405.
2007: Xudong Dai; Angus T De Souza; Hongyue Dai; David L Lewis; Chang-kyu Lee; Andy G Spencer; Hans Herweijer; James E Hagstrom; Peter Linsley; Douglas E Bassett; Roger G Ulrich; Yudong D He
PPARalpha siRNA-treated expression profiles uncover the causal sufficiency network for compound-induced liver hypertrophy.
PLoS computational biology 2007;3(3):e30.
2007: Peter Linsley; Janell Schelter; Julja Burchard; Miho Kibukawa; Melissa M Martin; Steven Bartz; Jason Johnson; Jordan M Cummins; Christopher K Raymond; Hongyue Dai; Nelson Chau; Michele Cleary; Aimee L Jackson; Michael Carleton; Lee Lim
Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression.
Molecular and cellular biology 2007;27(6):2240-52.
2006: Lee Weng; Hongyue Dai; Yihui Zhan; Yudong He; Sergey B Stepaniants; Douglas E Bassett
Rosetta error model for gene expression analysis.
Bioinformatics (Oxford, England) 2006;22(9):1111-21.
2006: Jerald P Radich; Hongyue Dai; Mao Mao; Vivian G Oehler; Janell Schelter; Brian J Druker; Charles L Sawyers; Neil Shah; Wendy Stock; Cheryl L Willman; Stephen H Friend; Peter Linsley
Gene expression changes associated with progression and response in chronic myeloid leukemia.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(8):2794-9.
2006: Xudong Dai; Yudong D He; Hongyue Dai; Pek Yee Lum; Christopher J Roberts; Jeffrey F Waring; Roger G Ulrich
Development of an approach for ab initio estimation of compound-induced liver injury based on global gene transcriptional profiles.
Genome informatics. International Conference on Genome Informatics 2006;17(2):77-88.
2005: Britta Weigelt; Lodewyk F A Wessels; Astrid J Bosma; Annuska M Glas; Dimitry S A Nuyten; Yudong D He; Hongyue Dai; Johannes L Peterse; Laura J van't Veer
No common denominator for breast cancer lymph node metastasis.
British journal of cancer 2005;93(8):924-32.
2005: Lodewyk F A Wessels; Marcel J T Reinders; Augustinus A M Hart; Cor J Veenman; Hongyue Dai; Yudong D He; Laura J van't Veer
A protocol for building and evaluating predictors of disease state based on microarray data.
Bioinformatics (Oxford, England) 2005;21(19):3755-62.
2005: Hongyue Dai; Laura J van't Veer; john lamb; Yudong D He; Mao Mao; Bernard M Fine; René Bernards; Marc J van de Vijver; Paul Deutsch; Alan Sachs; Roland B Stoughton; Stephen H Friend
A cell proliferation signature is a marker of extremely poor outcome in a subpopulation of breast cancer patients.
Cancer research 2005;65(10):4059-66.
2005: Howard Y Chang; Dimitry S A Nuyten; Julie B Sneddon; Trevor Hastie; Robert Tibshirani; Therese Sørlie; Hongyue Dai; Yudong D He; Laura J van't Veer; Harry Bartelink; Matt van de Rijn; Patrick O Brown; Marc J van de Vijver
Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(10):3738-43.
2004: Qiang Tian; Sergey B Stepaniants; Mao Mao; Lee Weng; Megan C Feetham; Michelle J Doyle; Eugene C Yi; Hongyue Dai; Vesteinn Thorsson; Jimmy Eng; David R Goodlett; Joel P Berger; Bert Gunter; Peter S Linseley; Roland B Stoughton; Ruedi Aebersold; Steven J Collins; William A Hanlon; Leroy Hood
Integrated genomic and proteomic analyses of gene expression in Mammalian cells.
Molecular & cellular proteomics : MCP 2004;3(10):960-9.
2004: Mao Mao; Matt Biery; Sumire V Kobayashi; Terry Ward; Greg Schimmack; Julja Burchard; Janell Schelter; Hongyue Dai; Yudong D He; Peter Linsley
T lymphocyte activation gene identification by coregulated expression on DNA microarrays.
Genomics 2004;83(6):989-99.
2004: Johanna W Lampe; Sergey B Stepaniants; Mao Mao; Jerald P Radich; Hongyue Dai; Peter Linsley; Stephen H Friend; John D Potter
Signatures of environmental exposures using peripheral leukocyte gene expression: tobacco smoke.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2004;13(3):445-53.
2004: Mark L Parrish; Nan Wei; Sven Duenwald; George Y Tokiwa; Yanqun Wang; Daniel J Holder; Hongyue Dai; Xiaohua Zhang; Christopher Wright; Paul Hodor; Guy Cavet; Robert L Phillips; Benjamin I Sun; Thomas L Fare
A microarray platform comparison for neuroscience applications.
Journal of neuroscience methods 2004;132(1):57-68.
2003: Thomas L Fare; Ernest M Coffey; Hongyue Dai; Yudong D He; Deborah A Kessler; Kristopher A Kilian; John E Koch; Eric LeProust; Matthew J Marton; Michael R Meyer; Roland B Stoughton; George Y Tokiwa; Yanqun Wang
Effects of atmospheric ozone on microarray data quality.
Analytical chemistry 2003;75(17):4672-5.
2003: Yudong D He; Hongyue Dai; Eric E Schadt; Guy Cavet; Stephen Wilton Edwards; Sergey B Stepaniants; Sven Duenwald; Robert Kleinhanz; Allan R Jones; Daniel D Shoemaker; Roland B Stoughton
Microarray standard data set and figures of merit for comparing data processing methods and experiment designs.
Bioinformatics (Oxford, England) 2003;19(8):956-65.
2003: Laura J van 't Veer; Hongyue Dai; Marc J van de Vijver; Yudong D He; Augustinus A M Hart; René Bernards; Stephen H Friend
Expression profiling predicts outcome in breast cancer.
Breast cancer research : BCR 2003;5(1):57-8.
2002: Marc J van de Vijver; Yudong D He; Laura J van't Veer; Hongyue Dai; Augustinus A M Hart; Dorien W Voskuil; George J Schreiber; Johannes L Peterse; Chris Roberts; Matthew J Marton; Mark Parrish; Douwe Atsma; Anke T Witteveen; Annuska M Glas; Leonie J M J Delahaye; Tony van der Velde; Harry Bartelink; Sjoerd Rodenhuis; Emiel T Rutgers; Stephen H Friend; René Bernards
A gene-expression signature as a predictor of survival in breast cancer.
The New England journal of medicine 2002;347(25):1999-2009.
2002: Hongyue Dai; Michael Meyer; Sergey B Stepaniants; Ziman Michael; Roland B Stoughton
Use of hybridization kinetics for differentiating specific from non-specific binding to oligonucleotide microarrays.
Nucleic acids research 2002;30(16):e86.
2002: Laura J van 't Veer; Hongyue Dai; Marc J van de Vijver; Yudong D He; Augustinus A M Hart; Mao Mao; Hans L Peterse; Karin van der Kooy; Matthew J Marton; Anke T Witteveen; George J Schreiber; Ron Kerkhoven; Chris Roberts; Peter Linsley; René Bernards; Stephen H Friend
Gene expression profiling predicts clinical outcome of breast cancer.
Nature 2002;415(6871):530-6.
2001: Jing Kong; Erhan Yenilmez; T W Tombler; W Kim; Hongyue Dai; Robert B Laughlin; L Liu; C S Jayanthi; S Y Wu
Quantum interference and ballistic transmission in nanotube electron waveguides.
Physical review letters 2001;87(10):106801.
2001: Timothy R Hughes; Mao Mao; A R Jones; Julja Burchard; Matthew J Marton; K W Shannon; S M Lefkowitz; Ziman Michael; Janell Schelter; Michael R Meyer; Sumire V Kobayashi; C Davis; Hongyue Dai; Yudong D He; S B Stephaniants; Guy Cavet; W L Walker; A West; Ernest M Coffey; Daniel D Shoemaker; Roland B Stoughton; A P Blanchard; Stephen H Friend; Peter Linsley
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer.
Nature biotechnology 2001;19(4):342-7.
2000: C Zhou; Jing Kong; Erhan Yenilmez; Hongyue Dai
Modulated chemical doping of individual carbon nanotubes.
Science (New York, N.Y.) 2000;290(5496):1552-5.
2000: Christopher J Roberts; B Nelson; Matthew J Marton; Roland B Stoughton; Michael R Meyer; Holly Bennett; Yudong D He; Hongyue Dai; W L Walker; Timothy R Hughes; M Tyers; C Boone; Stephen H Friend
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles.
Science (New York, N.Y.) 2000;287(5454):873-80.