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Antoine Danchin

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Co-Publications
Name
27
Glaser, Philippe
26
Krin, Evelyne
23
Bertin, Philippe
18
Médigue, Claudine
18
Rocha, Eduardo
16
Sekowska, Agnieszka
16
Martin-Verstraete, Isabelle
15
Moszer, Ivan
15
Viari, Alain
14
Kunst, Frank
13
Gilles, Anne-Marie
13
Bârzu, Octavian
13
Soutourina, Olga
11
Laurent-Winter, Christine
11
Turlin, Evelyne

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Publications

TOP 3
Danchin Antoine
Information of the chassis and information of the program in synthetic cells.
Fang Ming; Zeisberg Wencke-Maria; Condon Ciaran; Ogryzko Vasily; Danchin Antoine; Mechold Undine
Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.
Danchin Antoine
Natural selection and immortality.

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All Publications

2009: Danchin Antoine
Information of the chassis and information of the program in synthetic cells.
Systems and synthetic biology 2009;3(1-4):125-34.
2009: Fang Ming; Zeisberg Wencke-Maria; Condon Ciaran; Ogryzko Vasily; Danchin Antoine; Mechold Undine
Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis.
Nucleic acids research 2009;37(15):5114-25.
2009: Danchin Antoine
Natural selection and immortality.
Biogerontology 2009;10(4):503-16.
2009: Danchin Antoine
Cells need safety valves.
BioEssays : news and reviews in molecular, cellular and developmental biology 2009;31(7):769-73.
2009: Barbe Valérie; Cruveiller Stéphane; Kunst Frank; Lenoble Patricia; Meurice Guillaume; Sekowska Agnieszka; Vallenet David; Wang Tingzhang; Moszer Ivan; Médigue Claudine; Danchin Antoine
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later.
Microbiology (Reading, England) 2009;155(Pt 6):1758-75.
2009: Danchin Antoine
Nature, artifice and emerging diseases.
EMBO reports 2009;10(5):418-9.
2009: Saito Yohtaro; Ashida Hiroki; Sakiyama Tomoko; de Marsac Nicole Tandeau; Danchin Antoine; Sekowska Agnieszka; Yokota Akiho
Structural and functional similarities between a ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-like protein from Bacillus subtilis and photosynthetic RuBisCO.
The Journal of biological chemistry 2009;284(19):13256-64.
2008: Tanous Catherine; Soutourina Olga; Raynal Bertrand; Hullo Marie-Françoise; Mervelet Peggy; Gilles Anne-Marie; Noirot Philippe; Danchin Antoine; England Patrick; Martin-Verstraete Isabelle
The CymR regulator in complex with the enzyme CysK controls cysteine metabolism in Bacillus subtilis.
The Journal of biological chemistry 2008;283(51):35551-60.
2008: André Gaëlle; Even Sergine; Putzer Harald; Burguière Pierre; Croux Christian; Danchin Antoine; Martin-Verstraete Isabelle; Soutourina Olga
S-box and T-box riboswitches and antisense RNA control a sulfur metabolic operon of Clostridium acetobutylicum.
Nucleic acids research 2008;36(18):5955-69.
2008: Danchin Antoine
[Will we build a synthetic bacteria?]
Médecine sciences : M/S 2008;24(5):533-40.
2008: Krin Evelyne; Derzelle Sylviane; Bedard Karine; Adib-Conquy Minou; Turlin Evelyne; Lenormand Pascal; Hullo Marie-Francoise; Bonne Isabelle; Chakroun Nesrine; Lacroix Celine; Danchin Antoine
Regulatory role of UvrY in adaptation of Photorhabdus luminescens growth inside the insect.
Environmental microbiology 2008;10(5):1118-34.
2008: Chalabaev Sabina; Turlin Evelyne; Bay Sylvie; Ganneau Christelle; Brito-Fravallo Emma; Charles Jean-François; Danchin Antoine; Biville Francis
Cinnamic acid, an autoinducer of its own biosynthesis, is processed via Hca enzymes in Photorhabdus luminescens.
Applied and environmental microbiology 2008;74(6):1717-25.
2008: You CongHui; Sekowska Agnieszka; Francetic Olivera; Martin-Verstraete Isabelle; Wang YiPing; Danchin Antoine
Spx mediates oxidative stress regulation of the methionine sulfoxide reductases operon in Bacillus subtilis.
BMC microbiology 2008;8():128.
2008: Ashida Hiroki; Saito Yohtaro; Nakano Toshihiro; Tandeau de Marsac Nicole; Sekowska Agnieszka; Danchin Antoine; Yokota Akiho
RuBisCO-like proteins as the enolase enzyme in the methionine salvage pathway: functional and evolutionary relationships between RuBisCO-like proteins and photosynthetic RuBisCO.
Journal of experimental botany 2008;59(7):1543-54.
2008: Fang Gang; Rocha Eduardo P C; Danchin Antoine
Persistence drives gene clustering in bacterial genomes.
BMC genomics 2008;9():4.
2007: Chalabaev Sabina; Turlin Evelyne; Charles Jean-François; Namane Abdelkader; Pagès Sylvie; Givaudan Alain; Brito-Fravallo Emma; Danchin Antoine; Biville Francis
The HcaR regulatory protein of Photorhabdus luminescens affects the production of proteins involved in oxidative stress and toxemia.
Proteomics 2007;7(24):4499-510.
2007: Danchin Antoine; Fang Gang; Noria Stanislas
The extant core bacterial proteome is an archive of the origin of life.
Proteomics 2007;7(6):875-89.
2007: Hullo Marie-Françoise; Auger Sandrine; Soutourina Olga; Barzu Octavian; Yvon Mireille; Danchin Antoine; Martin-Verstraete Isabelle
Conversion of methionine to cysteine in Bacillus subtilis and its regulation.
Journal of bacteriology 2007;189(1):187-97.
2007: Mechold Undine; Fang Gang; Ngo Saravuth; Ogryzko Vasily; Danchin Antoine
YtqI from Bacillus subtilis has both oligoribonuclease and pAp-phosphatase activity.
Nucleic acids research 2007;35(13):4552-61.
2007: Makita Yuko; de Hoon Michiel J L; Danchin Antoine
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.
BMC bioinformatics 2007;8():47.
2006: Papa Rosanna; Glagla Susanne; Danchin Antoine; Schweder Thomas; Marino Gennaro; Duilio Angela
Proteomic identification of a two-component regulatory system in Pseudoalteromonas haloplanktis TAC125.
Extremophiles : life under extreme conditions 2006;10(6):483-91.
2006: Krin Evelyne; Chakroun Nesrine; Turlin Evelyne; Givaudan Alain; Gaboriau François; Bonne Isabelle; Rousselle Jean-Claude; Frangeul Lionel; Lacroix Céline; Hullo Marie-Françoise; Marisa Laetitia; Danchin Antoine; Derzelle Sylviane
Pleiotropic role of quorum-sensing autoinducer 2 in Photorhabdus luminescens.
Applied and environmental microbiology 2006;72(10):6439-51.
2006: Pascal Géraldine; Médigue Claudine; Danchin Antoine
Persistent biases in the amino acid composition of prokaryotic proteins.
BioEssays : news and reviews in molecular, cellular and developmental biology 2006;28(7):726-38.
2006: Turlin Evelyne; Pascal Géraldine; Rousselle Jean-Claude; Lenormand Pascal; Ngo Saravuth; Danchin Antoine; Derzelle Sylviane
Proteome analysis of the phenotypic variation process in Photorhabdus luminescens.
Proteomics 2006;6(9):2705-25.
2006: Even Sergine; Burguière Pierre; Auger Sandrine; Soutourina Olga; Danchin Antoine; Martin-Verstraete Isabelle
Global control of cysteine metabolism by CymR in Bacillus subtilis.
Journal of bacteriology 2006;188(6):2184-97.
2006: Mechold Undine; Ogryzko Vasily; Ngo Saravuth; Danchin Antoine
Oligoribonuclease is a common downstream target of lithium-induced pAp accumulation in Escherichia coli and human cells.
Nucleic acids research 2006;34(8):2364-73.
2005: Fang Gang; Rocha Eduardo; Danchin Antoine
How essential are nonessential genes?
Molecular biology and evolution 2005;22(11):2147-56.
2005: Médigue Claudine; Krin Evelyne; Pascal Géraldine; Barbe Valérie; Bernsel Andreas; Bertin Philippe N; Cheung Frankie; Cruveiller Stéphane; D'Amico Salvino; Duilio Angela; Fang Gang; Feller Georges; Ho Christine; Mangenot Sophie; Marino Gennaro; Nilsson Johan; Parrilli Ermenegilda; Rocha Eduardo P C; Rouy Zoé; Sekowska Agnieszka; Tutino Maria Luisa; Vallenet David; von Heijne Gunnar; Danchin Antoine
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125.
Genome research 2005;15(10):1325-35.
2005: Burguière Pierre; Fert Juliette; Guillouard Isabelle; Auger Sandrine; Danchin Antoine; Martin-Verstraete Isabelle
Regulation of the Bacillus subtilis ytmI operon, involved in sulfur metabolism.
Journal of bacteriology 2005;187(17):6019-30.
2005: Pascal Géraldine; Médigue Claudine; Danchin Antoine
Universal biases in protein composition of model prokaryotes.
Proteins 2005;60(1):27-35.
2005: Turlin Evelyne; Sismeiro Odile; Le Caer Jean Pierre; Labas Valérie; Danchin Antoine; Biville Francis
3-phenylpropionate catabolism and the Escherichia coli oxidative stress response.
Research in microbiology 2005;156(3):312-21.
2005: Auger S; Gomez M P; Danchin A; Martin-Verstraete I
The PatB protein of Bacillus subtilis is a C-S-lyase.
Biochimie 2005;87(2):231-8.
2005: You CongHui; Lu HongYan; Sekowska Agnieszka; Fang Gang; Wang YiPing; Gilles Anne-Marie; Danchin Antoine
The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis.
BMC microbiology 2005;5():57.
2005: Larsabal Etienne; Danchin Antoine
Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns".
BMC bioinformatics 2005;6():206.
2005: Fang Gang; Ho Christine; Qiu Yaowu; Cubas Virginie; Yu Zhou; Cabau Cédric; Cheung Frankie; Moszer Ivan; Danchin Antoine
Specialized microbial databases for inductive exploration of microbial genome sequences.
BMC genomics 2005;6(1):14.
2004: Burguière Pierre; Auger Sandrine; Hullo Marie-Françoise; Danchin Antoine; Martin-Verstraete Isabelle
Three different systems participate in L-cystine uptake in Bacillus subtilis.
Journal of bacteriology 2004;186(15):4875-84.
2004: Derzelle Sylviane; Ngo Saravuth; Turlin Evelyne; Duchaud Eric; Namane Abdelkader; Kunst Frank; Danchin Antoine; Bertin Philippe; Charles Jean-François
AstR-AstS, a new two-component signal transduction system, mediates swarming, adaptation to stationary phase and phenotypic variation in Photorhabdus luminescens.
Microbiology (Reading, England) 2004;150(Pt 4):897-910.
2004: Sekowska Agnieszka; Dénervaud Valérie; Ashida Hiroki; Michoud Karine; Haas Dieter; Yokota Akiho; Danchin Antoine
Bacterial variations on the methionine salvage pathway.
BMC microbiology 2004;4():9.
2004: Hullo Marie-Françoise; Auger Sandrine; Dassa Elie; Danchin Antoine; Martin-Verstraete Isabelle
The metNPQ operon of Bacillus subtilis encodes an ABC permease transporting methionine sulfoxide, D- and L-methionine.
Research in microbiology 2004;155(2):80-6.
2004: Derzelle Sylviane; Turlin Evelyne; Duchaud Eric; Pages Sylvie; Kunst Frank; Givaudan Alain; Danchin Antoine
The PhoP-PhoQ two-component regulatory system of Photorhabdus luminescens is essential for virulence in insects.
Journal of bacteriology 2004;186(5):1270-9.
2004: Hommais Florence; Krin Evelyne; Coppée Jean-Yves; Lacroix Céline; Yeramian Edouard; Danchin Antoine; Bertin Philippe
GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli.
Microbiology (Reading, England) 2004;150(Pt 1):61-72.
2004: Rocha Eduardo P C; Danchin Antoine
An analysis of determinants of amino acids substitution rates in bacterial proteins.
Molecular biology and evolution 2004;21(1):108-16.
2003: Rocha Eduardo P C; Danchin Antoine
Gene essentiality determines chromosome organisation in bacteria.
Nucleic acids research 2003;31(22):6570-7.
2003: Tendeng C; Soutourina O A; Danchin A; Bertin P N
MvaT proteins in Pseudomonas spp.: a novel class of H-NS-like proteins.
Microbiology (Reading, England) 2003;149(Pt 11):3047-50.
2003: Duchaud Eric; Rusniok Christophe; Frangeul Lionel; Buchrieser Carmen; Givaudan Alain; Taourit Séad; Bocs Stéphanie; Boursaux-Eude Caroline; Chandler Michael; Charles Jean-François; Dassa Elie; Derose Richard; Derzelle Sylviane; Freyssinet Georges; Gaudriault Sophie; Médigue Claudine; Lanois Anne; Powell Kerrie; Siguier Patricia; Vincent Rachel; Wingate Vincent; Zouine Mohamed; Glaser Philippe; Boemare Noël; Danchin Antoine; Kunst Frank
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.
Nature biotechnology 2003;21(11):1307-13.
2003: Rocha Eduardo P C; Fralick Joe; Vediyappan Govindsamy; Danchin Antoine; Norris Vic
A strand-specific model for chromosome segregation in bacteria.
Molecular microbiology 2003;49(4):895-903.
2003: Gagyi Cristina; Bucurenci Nadia; Sîrbu Ovidiu; Labesse Gilles; Ionescu Mihaela; Ofiteru Augustin; Assairi Liliane; Landais Stéphanie; Danchin Antoine; Bârzu Octavian; Gilles Anne-Marie
UMP kinase from the Gram-positive bacterium Bacillus subtilis is strongly dependent on GTP for optimal activity.
European journal of biochemistry / FEBS 2003;270(15):3196-204.
2003: Rocha Eduardo P C; Danchin Antoine
Essentiality, not expressiveness, drives gene-strand bias in bacteria.
Nature genetics 2003;34(4):377-8.
2003: Krin Evelyne; Laurent-Winter Christine; Bertin Philippe N; Danchin Antoine; Kolb Annie
Transcription regulation coupling of the divergent argG and metY promoters in Escherichia coli K-12.
Journal of bacteriology 2003;185(10):3139-46.
2003: Yuen Kwok-Yung; Pascal Géraldine; Wong Samson S Y; Glaser Philippe; Woo Patrick C Y; Kunst Frank; Cai James J; Cheung Elim Y L; Médigue Claudine; Danchin Antoine
Exploring the Penicillium marneffei genome.
Archives of microbiology 2003;179(5):339-53.
2003: Tendeng Christian; Krin Evelyne; Soutourina Olga A; Marin Antoine; Danchin Antoine; Bertin Philippe N
A Novel H-NS-like protein from an antarctic psychrophilic bacterium reveals a crucial role for the N-terminal domain in thermal stability.
The Journal of biological chemistry 2003;278(21):18754-60.
2003: Danchin Antoine
Genomes and evolution.
Current issues in molecular biology 2003;5(2):37-42.
2003: Danchin Antoine
Infection of society. As diseases have evolved to exploit the holes in our defences, including weaknesses in society, we have to reconsider our way of life, otherwise they will continue to haunt us.
EMBO reports 2003;4(4):333-5.
2003: Tosato Valentina; Gjuracic Kresimir; Vlahovicek Kristian; Pongor Sandor; Danchin Antoine; Bruschi Carlo V
The DNA secondary structure of the Bacillus subtilis genome.
FEMS microbiology letters 2003;218(1):23-30.
2003: Biville Francis; Oshima Taku; Mori Hirotada; Kawagoe Yuya; Bouvet Odile; Rager Marie-Noëlle; Perrotte-Piquemal Marina; Danchin Antoine
Escherichia coli response to exogenous pyrophosphate and analogs.
Journal of molecular microbiology and biotechnology 2003;5(1):37-45.
2002: Auger Sandrine; Danchin Antoine; Martin-Verstraete Isabelle
Global expression profile of Bacillus subtilis grown in the presence of sulfate or methionine.
Journal of bacteriology 2002;184(18):5179-86.
2002: Guillouard Isabelle; Auger Sandrine; Hullo Marie-Françoise; Chetouani Farid; Danchin Antoine; Martin-Verstraete Isabelle
Identification of Bacillus subtilis CysL, a regulator of the cysJI operon, which encodes sulfite reductase.
Journal of bacteriology 2002;184(17):4681-9.
2002: Derzelle Sylviane; Duchaud Eric; Kunst Frank; Danchin Antoine; Bertin Philippe
Identification, characterization, and regulation of a cluster of genes involved in carbapenem biosynthesis in Photorhabdus luminescens.
Applied and environmental microbiology 2002;68(8):3780-9.
2002: Krin Evelyne; Sismeiro Odile; Danchin Antoine; Bertin Philippe N
The regulation of Enzyme IIA(Glc) expression controls adenylate cyclase activity in Escherichia coli.
Microbiology (Reading, England) 2002;148(Pt 5):1553-9.
2002: Soutourina Olga A; Krin Evelyne; Laurent-Winter Christine; Hommais Florence; Danchin Antoine; Bertin Philippe N
Regulation of bacterial motility in response to low pH in Escherichia coli: the role of H-NS protein.
Microbiology (Reading, England) 2002;148(Pt 5):1543-51.
2002: Hommais Florence; Laurent-Winter Christine; Labas Valérie; Krin Evelyne; Tendeng Christian; Soutourina Olga; Danchin Antoine; Bertin Philippe
Effect of mild acid pH on the functioning of bacterial membranes in Vibrio cholerae.
Proteomics 2002;2(5):571-9.
2002: Médigue Claudine; Wong Benjamin Chun-Yu; Lin Marie Chia-Mi; Bocs Stéphanie; Danchin Antoine
The secE gene of Helicobacter pylori.
Journal of bacteriology 2002;184(10):2837-40.
2002: Sekowska Agnieszka; Danchin Antoine
The methionine salvage pathway in Bacillus subtilis.
BMC microbiology 2002;2():8.
2002: Auger Sandrine; Yuen W H; Danchin Antoine; Martin-Verstraete Isabelle
The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination.
Microbiology (Reading, England) 2002;148(Pt 2):507-18.
2002: Moszer Ivan; Jones Louis M; Moreira Sandrine; Fabry Cécilia; Danchin Antoine
SubtiList: the reference database for the Bacillus subtilis genome.
Nucleic acids research 2002;30(1):62-5.
2002: Bocs Stéphanie; Danchin Antoine; Médigue Claudine
Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes.
BMC bioinformatics 2002;3():5.
2001: Soutourina O A; Semenova E A; Parfenova V V; Danchin A; Bertin P
Control of bacterial motility by environmental factors in polarly flagellated and peritrichous bacteria isolated from Lake Baikal.
Applied and environmental microbiology 2001;67(9):3852-9.
2001: Hullo M F; Moszer I; Danchin A; Martin-Verstraete I
CotA of Bacillus subtilis is a copper-dependent laccase.
Journal of bacteriology 2001;183(18):5426-30.
2001: Rocha E P; Danchin A
Ongoing evolution of strand composition in bacterial genomes.
Molecular biology and evolution 2001;18(9):1789-99.
2001: Coppée J Y; Auger S; Turlin E; Sekowska A; Le Caer J P; Labas V; Vagner V; Danchin A; Martin-Verstraete I
Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study.
Microbiology (Reading, England) 2001;147(Pt 6):1631-40.
2001: Rocha E P; Danchin A; Viari A
Evolutionary role of restriction/modification systems as revealed by comparative genome analysis.
Genome research 2001;11(6):946-58.
2001: Krin E; Hommais F; Soutourina O; Ngo S; Danchin A; Bertin P
Description and application of a rapid method for genomic DNA direct sequencing.
FEMS microbiology letters 2001;199(2):229-33.
2001: Hommais F; Krin E; Laurent-Winter C; Soutourina O; Malpertuy A; Le Caer J P; Danchin A; Bertin P
Large-scale monitoring of pleiotropic regulation of gene expression by the prokaryotic nucleoid-associated protein, H-NS.
Molecular microbiology 2001;40(1):20-36.
2001: Bertin P; Hommais F; Krin E; Soutourina O; Tendeng C; Derzelle S; Danchin A
H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple role in the regulation of bacterial metabolism.
Biochimie 2001;83(2):235-41.
2001: Turlin E; Perrotte-piquemal M; Danchin A; Biville F
Regulation of the early steps of 3-phenylpropionate catabolism in Escherichia coli.
Journal of molecular microbiology and biotechnology 2001;3(1):127-33.
2001: Sekowska A; Mulard L; Krogh S; Tse J K; Danchin A
MtnK, methylthioribose kinase, is a starvation-induced protein in Bacillus subtilis.
BMC microbiology 2001;1():15.
2000: Norris V; Fralick J; Danchin A
A SeqA hyperstructure and its interactions direct the replication and sequestration of DNA.
Molecular microbiology 2000;37(4):696-702.
2000: Sekowska A; Danchin A; Risler J L
Phylogeny of related functions: the case of polyamine biosynthetic enzymes.
Microbiology (Reading, England) 2000;146 ( Pt 8)():1815-28.
2000: Rocha E P; Danchin A; Viari A
The DB case: pattern matching evidence is not significant.
Molecular microbiology 2000;37(1):216-8.
2000: Rocha E P; Sekowska A; Danchin A
Sulphur islands in the Escherichia coli genome: markers of the cell's architecture?
FEBS letters 2000;476(1-2):8-11.
2000: Sekowska A; Coppée J Y; Le Caer J P; Martin-Verstraete I; Danchin A
S-adenosylmethionine decarboxylase of Bacillus subtilis is closely related to archaebacterial counterparts.
Molecular microbiology 2000;36(5):1135-47.
2000: Tendeng C; Badaut C; Krin E; Gounon P; Ngo S; Danchin A; Rimsky S; Bertin P
Isolation and characterization of vicH, encoding a new pleiotropic regulator in Vibrio cholerae.
Journal of bacteriology 2000;182(7):2026-32.
2000: Rocha E P; Guerdoux-Jamet P; Moszer I; Viari A; Danchin A
Implication of gene distribution in the bacterial chromosome for the bacterial cell factory.
Journal of biotechnology 2000;78(3):209-19.
2000: Danchin A; Guerdoux-Jamet P; Moszer I; Nitschké P
Mapping the bacterial cell architecture into the chromosome.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2000;355(1394):179-90.
2000: Danchin A
A brief history of genome research and bioinformatics in France.
Bioinformatics (Oxford, England) 2000;16(1):65-75.
1999: Soutourina O; Kolb A; Krin E; Laurent-Winter C; Rimsky S; Danchin A; Bertin P
Multiple control of flagellum biosynthesis in Escherichia coli: role of H-NS protein and the cyclic AMP-catabolite activator protein complex in transcription of the flhDC master operon.
Journal of bacteriology 1999;181(24):7500-8.
1999: Rocha E P; Danchin A; Viari A
Functional and evolutionary roles of long repeats in prokaryotes.
Research in microbiology 1999;150(9-10):725-33.
1999: Médigue C; Rose M; Viari A; Danchin A
Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence.
Genome research 1999;9(11):1116-27.
1999: Presecan-Siedel E; Galinier A; Longin R; Deutscher J; Danchin A; Glaser P; Martin-Verstraete I
Catabolite regulation of the pta gene as part of carbon flow pathways in Bacillus subtilis.
Journal of bacteriology 1999;181(22):6889-97.
1999: Sekowska A; Danchin A
Identification of yrrU as the methylthioadenosine nucleosidase gene in Bacillus subtilis.
DNA research : an international journal for rapid publication of reports on genes and genomes 1999;6(5):255-64.
1999: Frangeul L; Nelson K E; Buchrieser C; Danchin A; Glaser P; Kunst F
Cloning and assembly strategies in microbial genome projects.
Microbiology (Reading, England) 1999;145 ( Pt 10)():2625-34.
1999: Moszer I; Rocha E P; Danchin A
Codon usage and lateral gene transfer in Bacillus subtilis.
Current opinion in microbiology 1999;2(5):524-8.
1999: Rocha E P; Danchin A; Viari A
Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes.
Molecular biology and evolution 1999;16(9):1219-30.
1999: Rocha E P; Danchin A; Viari A
Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis.
Nucleic acids research 1999;27(17):3567-76.
1999: Rocha E P; Danchin A; Viari A
Bacterial DNA strand compositional asymmetry: response.
Trends in microbiology 1999;7(8):308.
1999: Rocha E P; Danchin A; Viari A
Universal replication biases in bacteria.
Molecular microbiology 1999;32(1):11-6.
1999: Perrotte-Piquemal M; Danchin A; Biville F
Pyrophosphate increases the efficiency of enterobactin-dependent iron uptake in Escherichia coli.
Biochimie 1999;81(3):245-53.
1999: Landais S; Gounon P; Laurent-Winter C; Mazié J C; Danchin A; Bârzu O; Sakamoto H
Immunochemical analysis of UMP kinase from Escherichia coli.
Journal of bacteriology 1999;181(3):833-40.
1999: Médigue C; Rechenmann F; Danchin A; Viari A
Imagene: an integrated computer environment for sequence annotation and analysis.
Bioinformatics (Oxford, England) 1999;15(1):2-15.
1999: Bertin P; Benhabiles N; Krin E; Laurent-Winter C; Tendeng C; Turlin E; Thomas A; Danchin A; Brasseur R
The structural and functional organization of H-NS-like proteins is evolutionarily conserved in gram-negative bacteria.
Molecular microbiology 1999;31(1):319-29.
1998: Nitschké P; Guerdoux-Jamet P; Chiapello H; Faroux G; Hénaut C; Hénaut A; Danchin A
Indigo: a World-Wide-Web review of genomes and gene functions.
FEMS microbiology reviews 1998;22(4):207-27.
1998: Sekowska A; Bertin P; Danchin A
Characterization of polyamine synthesis pathway in Bacillus subtilis 168.
Molecular microbiology 1998;29(3):851-8.
1998: Sismeiro O; Trotot P; Biville F; Vivares C; Danchin A
Aeromonas hydrophila adenylyl cyclase 2: a new class of adenylyl cyclases with thermophilic properties and sequence similarities to proteins from hyperthermophilic archaebacteria.
Journal of bacteriology 1998;180(13):3339-44.
1998: Rocha E P; Viari A; Danchin A
Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons.
Nucleic acids research 1998;26(12):2971-80.
1998: Hénaut A; Lisacek F; Nitschké P; Moszer I; Danchin A
Global analysis of genomic texts: the distribution of AGCT tetranucleotides in the Escherichia coli and Bacillus subtilis genomes predicts translational frameshifting and ribosomal hopping in several genes.
Electrophoresis 1998;19(4):515-27.
1998: Bucurenci N; Serina L; Zaharia C; Landais S; Danchin A; Bârzu O
Mutational analysis of UMP kinase from Escherichia coli.
Journal of bacteriology 1998;180(3):473-7.
1997: Danchin A; Hénaut A
The map of the cell is in the chromosome.
Current opinion in genetics & development 1997;7(6):852-4.
1997: Kunst F; Ogasawara N; Moszer I; Albertini A M; Alloni G; Azevedo V; Bertero M G; Bessières P; Bolotin A; Borchert S; Borriss R; Boursier L; Brans A; Braun M; Brignell S C; Bron S; Brouillet S; Bruschi C V; Caldwell B; Capuano V; Carter N M; Choi S K; Codani J J; Connerton I F; Danchin A
The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Nature 1997;390(6657):249-56.
1997: Presecan E; Moszer I; Boursier L; Cruz Ramos H C; de la Fuente V; Hullo M F; Lelong C; Schleich S; Sekowska A; Song B H; Villani G; Kunst F; Danchin A; Glaser P
The Bacillus subtilis genome from gerBC (311 degrees) to licR (334 degrees).
Microbiology (Reading, England) 1997;143 ( Pt 10)():3313-28.
1997: Guerdoux-Jamet P; Hénaut A; Nitschké P; Risler J L; Danchin A
Using codon usage to predict genes origin: is the Escherichia coli outer membrane a patchwork of products from different genomes?
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(4):257-65.
1997: Laurent-Winter C; Ngo S; Danchin A; Bertin P
Role of Escherichia coli histone-like nucleoid-structuring protein in bacterial metabolism and stress response--identification of targets by two-dimensional electrophoresis.
European journal of biochemistry / FEBS 1997;244(3):767-73.
1997: Danchin A
Comparison between the Escherichia coli and Bacillus subtilis genomes suggests that a major function of polynucleotide phosphorylase is to synthesize CDP.
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(1):9-18.
1996: Moszer I; Kunst F; Danchin A
The European Bacillus subtilis genome sequencing project: current status and accessibility of the data from a new World Wide Web site.
Microbiology (Reading, England) 1996;142 ( Pt 11)():2987-91.
1996: Biville F; Laurent-Winter C; Danchin A
In vivo positive effects of exogenous pyrophosphate on Escherichia coli cell growth and stationary phase survival.
Research in microbiology 1996;147(8):597-608.
1996: Bouhss A; Vincent M; Munier H; Gilles A M; Takahashi M; Bârzu O; Danchin A; Gallay J
Conformational transitions within the calmodulin-binding site of Bordetella pertussis adenylate cyclase studied by time-resolved fluorescence of Trp242 and circular dichroism.
European journal of biochemistry / FEBS 1996;237(3):619-28.
1996: Hénaut A; Rouxel T; Gleizes A; Moszer I; Danchin A
Uneven distribution of GATC motifs in the Escherichia coli chromosome, its plasmids and its phages.
Journal of molecular biology 1996;257(3):574-85.
1996: Dumay V; Danchin A; Crasnier M
Regulation of Escherichia coli adenylate cyclase activity during hexose phosphate transport.
Microbiology (Reading, England) 1996;142 ( Pt 3)():575-83.
1996: Bucurenci N; Sakamoto H; Briozzo P; Palibroda N; Serina L; Sarfati R S; Labesse G; Briand G; Danchin A; Barzu O; Gilles A M
CMP kinase from Escherichia coli is structurally related to other nucleoside monophosphate kinases.
The Journal of biological chemistry 1996;271(5):2856-62.
1996: Danchin A
By way of introduction: some constraints of the cell physics that are usually forgotten, but should be taken into account for in silico genome analysis.
Biochimie 1996;78(5):299-301.
1996: Trotot P; Sismeiro O; Vivarès C; Glaser P; Bresson-Roy A; Danchin A
Comparative analysis of the cya locus in enterobacteria and related gram-negative facultative anaerobes.
Biochimie 1996;78(4):277-87.
1995: Cruz Ramos H; Boursier L; Moszer I; Kunst F; Danchin A; Glaser P
Anaerobic transcription activation in Bacillus subtilis: identification of distinct FNR-dependent and -independent regulatory mechanisms.
The EMBO journal 1995;14(23):5984-94.
1995: Médigue C; Moszer I; Viari A; Danchin A
Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype.
Gene 1995;165(1):GC37-51.
1995: de Crécy-Lagard V; Binet M; Danchin A
Fructose phosphotransferase system of Xanthomonas campestris pv. campestris: characterization of the fruB gene.
Microbiology (Reading, England) 1995;141 ( Pt 9)():2253-60.
1995: Betsou F; Sismeiro O; Danchin A; Guiso N
Cloning and sequence of the Bordetella bronchiseptica adenylate cyclase-hemolysin-encoding gene: comparison with the Bordetella pertussis gene.
Gene 1995;162(1):165-6.
1995: Archdeacon J; Talty J; Boesten B; Danchin A; O'Gara F
Cloning of the second adenylate cyclase gene (cya2) from Rhizobium meliloti F34: sequence similarity to eukaryotic cyclases.
FEMS microbiology letters 1995;128(2):177-84.
1995: Danchin A; Krin E
Filling the gap between hns and adhE in Escherichia coli K12.
Microbiology (Reading, England) 1995;141 ( Pt 4)():959-60.
1995: Serina L; Blondin C; Krin E; Sismeiro O; Danchin A; Sakamoto H; Gilles A M; Bârzu O
Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP.
Biochemistry 1995;34(15):5066-74.
1995: Glaser P; Danchin A; Kunst F; Zuber P; Nakano M M
Identification and isolation of a gene required for nitrate assimilation and anaerobic growth of Bacillus subtilis.
Journal of bacteriology 1995;177(4):1112-5.
1995: Moszer I; Glaser P; Danchin A
SubtiList: a relational database for the Bacillus subtilis genome.
Microbiology (Reading, England) 1995;141 ( Pt 2)():261-8.
1995: Kunst F; Vassarotti A; Danchin A
Organization of the European Bacillus subtilis genome sequencing project.
Microbiology (Reading, England) 1995;141 ( Pt 2)():249-55.
1995: Laurent-Winter C; Lejeune P; Danchin A
The Escherichia coli DNA-binding protein H-NS is one of the first proteins to be synthesized after a nutritional upshift.
Research in microbiology 1995;146(1):5-16.
1995: Médigue C; Vermat T; Bisson G; Viari A; Danchin A
Cooperative computer system for genome sequence analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():249-58.
1994: Santana M; Ionescu M S; Vertes A; Longin R; Kunst F; Danchin A; Glaser P
Bacillus subtilis F0F1 ATPase: DNA sequence of the atp operon and characterization of atp mutants.
Journal of bacteriology 1994;176(22):6802-11.
1994: Bertin P; Terao E; Lee E H; Lejeune P; Colson C; Danchin A; Collatz E
The H-NS protein is involved in the biogenesis of flagella in Escherichia coli.
Journal of bacteriology 1994;176(17):5537-40.
1994: Crasnier M; Dumay V; Danchin A
The catalytic domain of Escherichia coli K-12 adenylate cyclase as revealed by deletion analysis of the cya gene.
Molecular & general genetics : MGG 1994;243(4):409-16.
1993: Danchin A; Pidoux J; Krin E; Thompson C J; Ullmann A
The adenylate cyclase catalytic domain of Streptomyces coelicolor is carboxy-terminal.
FEMS microbiology letters 1993;114(2):145-51.
1993: Gilles A M; Sismeiro O; Munier H; Fabian H; Mantsch H H; Surewicz W K; Craescu C C; Barzu O; Danchin A
Structural and physico-chemical characteristics of Bordetella pertussis adenylate kinase, a tryptophan-containing enzyme.
European journal of biochemistry / FEBS 1993;218(3):921-7.
1993: Munier H; Bouhss A; Gilles A M; Krin E; Glaser P; Danchin A; Bârzu O
Structural flexibility of the calmodulin-binding locus in Bordetella pertussis adenylate cyclase. Reconstitution of catalytically active species from fragments or inactive forms of the enzyme.
European journal of biochemistry / FEBS 1993;217(2):581-6.
1993: Médigue C; Viari A; Hénaut A; Danchin A
Colibri: a functional data base for the Escherichia coli genome.
Microbiological reviews 1993;57(3):623-54.
1993: Beuve A; Krin E; Danchin A
Rhizobium meliloti adenylate cyclase: probing of a NTP-binding site common to cyclases and cation transporters.
Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie 1993;316(6):553-9.
1993: Bouhss A; Krin E; Munier H; Gilles A M; Danchin A; Glaser P; Bârzu O
Cooperative phenomena in binding and activation of Bordetella pertussis adenylate cyclase by calmodulin.
The Journal of biological chemistry 1993;268(3):1690-4.
1992: De Reuse H; Kolb A; Danchin A
Positive regulation of the expression of the Escherichia coli pts operon. Identification of the regulatory regions.
Journal of molecular biology 1992;226(3):623-35.
1992: Beuve A; Danchin A
From adenylate cyclase to guanylate cyclase. Mutational analysis of a change in substrate specificity.
Journal of molecular biology 1992;225(4):933-8.
1992: Munier H; Bouhss A; Krin E; Danchin A; Gilles A M; Glaser P; Bârzu O
The role of histidine 63 in the catalytic mechanism of Bordetella pertussis adenylate cyclase.
The Journal of biological chemistry 1992;267(14):9816-20.
1992: Bertin P; Lejeune P; Colson C; Danchin A
Mutations in bglY, the structural gene for the DNA-binding protein H1 of Escherichia coli, increase the expression of the kanamycin resistance gene carried by plasmid pGR71.
Molecular & general genetics : MGG 1992;233(1-2):184-92.
1992: Santana M; Kunst F; Hullo M F; Rapoport G; Danchin A; Glaser P
Molecular cloning, sequencing, and physiological characterization of the qox operon from Bacillus subtilis encoding the aa3-600 quinol oxidase.
The Journal of biological chemistry 1992;267(15):10225-31.
1992: Zeng G Q; De Reuse H; Danchin A
Mutational analysis of the enzyme IIIGlc of the phosphoenolpyruvate phosphotransferase system in Escherichia coli.
Research in microbiology 1992;143(3):251-61.
1991: Médigue C; Rouxel T; Vigier P; Hénaut A; Danchin A
Evidence for horizontal gene transfer in Escherichia coli speciation.
Journal of molecular biology 1991;222(4):851-6.
1991: Médigue C; Viari A; Hénaut A; Danchin A
Escherichia coli molecular genetic map (1500 kbp): update II.
Molecular microbiology 1991;5(11):2629-40.
1991: Moszer I; Glaser P; Danchin A
Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12.
Biochimie 1991;73(11):1361-74.
1991: Mock M; Crasnier M; Duflot E; Dumay V; Danchin A
Structural and functional relationships between Pasteurella multocida and enterobacterial adenylate cyclases.
Journal of bacteriology 1991;173(19):6265-9.
1991: Danchin A; Médigue C; Gascuel O; Soldano H; Hénaut A
From data banks to data bases.
Research in microbiology 1991;142(7-8):913-6.
1991: de Crécy-Lagard V; Bouvet O M; Lejeune P; Danchin A
Fructose catabolism in Xanthomonas campestris pv. campestris. Sequence of the PTS operon, characterization of the fructose-specific enzymes.
The Journal of biological chemistry 1991;266(27):18154-61.
1991: Glaser P; Munier H; Gilles A M; Krin E; Porumb T; Bârzu O; Sarfati R; Pellecuer C; Danchin A
Functional consequences of single amino acid substitutions in calmodulin-activated adenylate cyclase of Bordetella pertussis.
The EMBO journal 1991;10(7):1683-8.
1991: de Crécy-Lagard V; Lejeune P; Bouvet O M; Danchin A
Identification of two fructose transport and phosphorylation pathways in Xanthomonas campestris pv. campestris.
Molecular & general genetics : MGG 1991;227(3):465-72.
1991: Munier H; Gilles A M; Glaser P; Krin E; Danchin A; Sarfati R; Bârzu O
Isolation and characterization of catalytic and calmodulin-binding domains of Bordetella pertussis adenylate cyclase.
European journal of biochemistry / FEBS 1991;196(2):469-74.
1991: De Reuse H; Danchin A
Positive regulation of the pts operon of Escherichia coli: genetic evidence for a signal transduction mechanism.
Journal of bacteriology 1991;173(2):727-33.
1990: Bertin P; Lejeune P; Laurent-Winter C; Danchin A
Mutations in bglY, the structural gene for the DNA-binding protein H1, affect expression of several Escherichia coli genes.
Biochimie 1990;72(12):889-91.
1990: Sarfati R S; Kansal V K; Munier H; Glaser P; Gilles A M; Labruyère E; Mock M; Danchin A; Bârzu O
Binding of 3'-anthraniloyl-2'-deoxy-ATP to calmodulin-activated adenylate cyclase from Bordetella pertussis and Bacillus anthracis.
The Journal of biological chemistry 1990;265(31):18902-6.
1990: de Crecy-Lagard V; Glaser P; Lejeune P; Sismeiro O; Barber C E; Daniels M J; Danchin A
A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity.
Journal of bacteriology 1990;172(10):5877-83.
1990: Médigue C; Hénaut A; Danchin A
Escherichia coli molecular genetic map (1000 kbp): update I.
Molecular microbiology 1990;4(9):1443-54.
1990: Gilles A M; Munier H; Rose T; Glaser P; Krin E; Danchin A; Pellecuer C; Bârzu O
Intrinsic fluorescence of a truncated Bordetella pertussis adenylate cyclase expressed in Escherichia coli.
Biochemistry 1990;29(35):8126-30.
1990: Crasnier M; Danchin A
Characterization of Escherichia coli adenylate cyclase mutants with modified regulation.
Journal of general microbiology 1990;136(9):1825-31.
1990: Beuve A; Boesten B; Crasnier M; Danchin A; O'Gara F
Rhizobium meliloti adenylate cyclase is related to eucaryotic adenylate and guanylate cyclases.
Journal of bacteriology 1990;172(5):2614-21.
1990: Médigue C; Bouché J P; Hénaut A; Danchin A
Mapping of sequenced genes (700 kbp) in the restriction map of the Escherichia coli chromosome.
Molecular microbiology 1990;4(2):169-87.
1990: Lévy S; Zeng G Q; Danchin A
Cyclic AMP synthesis in Escherichia coli strains bearing known deletions in the pts phosphotransferase operon.
Gene 1990;86(1):27-33.
1989: Glaser P; Roy A; Danchin A
Molecular characterization of two cya mutations, cya-854 and cyaR1.
Journal of bacteriology 1989;171(9):5176-8.
1989: Danchin A; Sezer O; Glaser P; Chalon P; Caput D
Cloning and expression of mouse-brain calmodulin as an activator of Bordetella pertussis adenylate cyclase in Escherichia coli.
Gene 1989;80(1):145-9.
1989: Lejeune P; Bertin P; Walon C; Willemot K; Colson C; Danchin A
A locus involved in kanamycin, chloramphenicol and L-serine resistance is located in the bglY-galU region of the Escherichia coli K12 chromosome.
Molecular & general genetics : MGG 1989;218(2):361-3.
1989: De Reuse H; Lévy S; Zeng G; Danchin A
Genetics of the PTS components in Escherichia coli K-12.
FEMS microbiology reviews 1989;5(1-2):61-7.
1989: Glaser P; Elmaoglou-Lazaridou A; Krin E; Ladant D; Bârzu O; Danchin A
Identification of residues essential for catalysis and binding of calmodulin in Bordetella pertussis adenylate cyclase by site-directed mutagenesis.
The EMBO journal 1989;8(3):967-72.
1989: Goyard S; Orlando C; Sabatier J M; Labruyere E; d'Alayer J; Fontan G; van Rietschoten J; Mock M; Danchin A; Ullmann A
Identification of a common domain in calmodulin-activated eukaryotic and bacterial adenylate cyclases.
Biochemistry 1989;28(5):1964-7.
1989: Lévy S; De Reuse H; Danchin A
Antisense expression at the ptsH-ptsI locus of Escherichia coli.
FEMS microbiology letters 1989;48(1):35-8.
1988: Glaser P; Sakamoto H; Bellalou J; Ullmann A; Danchin A
Secretion of cyclolysin, the calmodulin-sensitive adenylate cyclase-haemolysin bifunctional protein of Bordetella pertussis.
The EMBO journal 1988;7(12):3997-4004.
1988: Levy S; Danchin A
Phylogeny of metabolic pathways: O-acetylserine sulphydrylase A is homologous to the tryptophan synthase beta subunit.
Molecular microbiology 1988;2(6):777-83.
1988: Escuyer V; Duflot E; Sezer O; Danchin A; Mock M
Structural homology between virulence-associated bacterial adenylate cyclases.
Gene 1988;71(2):293-8.
1988: De Reuse H; Danchin A
The ptsH, ptsI, and crr genes of the Escherichia coli phosphoenolpyruvate-dependent phosphotransferase system: a complex operon with several modes of transcription.
Journal of bacteriology 1988;170(9):3827-37.
1988: Mock M; Labruyère E; Glaser P; Danchin A; Ullmann A
Cloning and expression of the calmodulin-sensitive Bacillus anthracis adenylate cyclase in Escherichia coli.
Gene 1988;64(2):277-84.
1988: Roy A; Glaser P; Danchin A
Aspects of the regulation of adenylate cyclase synthesis in Escherichia coli K12.
Journal of general microbiology 1988;134(2):359-67.
1988: Glaser P; Ladant D; Sezer O; Pichot F; Ullmann A; Danchin A
The calmodulin-sensitive adenylate cyclase of Bordetella pertussis: cloning and expression in Escherichia coli.
Molecular microbiology 1988;2(1):19-30.
1988: Glaser P; Danchin A; Ladant D; Barzu O; Ullmann A
Bordetella pertussis adenylate cyclase: the gene and the protein.
The Tokai journal of experimental and clinical medicine 1988;13 Suppl():239-52.
1987: Danchin A
Membrane integration of carbohydrate transport in bacteria.
Microbiological sciences 1987;4(9):267-9.
1987: Touati E; Danchin A
Cloning and characterization of the pH 2.5 acid phosphatase gene, appA: cyclic AMP mediated negative regulation.
Molecular & general genetics : MGG 1987;208(3):499-505.
1987: Boesten B; Lenzen G; Danchin A; O'Gara F
Nucleotide sequence of a tRNA(leu)CAG gene from Rhizobium meliloti.
Gene 1987;55(1):153-6.

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