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Gaudenz Danuser

Research Profile

Chemicals & Drugs

Physiology

Procedures

Microscopy, Fluorescence

Anatomy

Concepts & Ideas

Living Beings

Potoroidae

Activities & Behaviors

Image Processing, Computer-Assisted

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Publications

TOP 3
Jennifer B Long; Laura Anne Lowery; Maria Bagonis; Gaudenz Danuser; Haeryun Lee; David Van Vactor
Multiparametric analysis of CLASP-interacting protein functions during interphase microtubule dynamics.
Marco Vilela; Sebastien Besson; Hunter Elliott; Klaus Hahn; Nadia Halidi; Jessica Tytell; Gaudenz Danuser
Fluctuation analysis of activity biosensor images for the study of information flow in signaling pathways.
Mei Rosa Ng; Gaudenz Danuser; Achim Besser; Joan S Brugge
Substrate stiffness regulates cadherin-dependent collective migration through myosin-II contractility.

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All Publications

2013: Jennifer B Long; Laura Anne Lowery; Maria Bagonis; Gaudenz Danuser; Haeryun Lee; David Van Vactor
Multiparametric analysis of CLASP-interacting protein functions during interphase microtubule dynamics.
Molecular and cellular biology 2013;33(8):1528-45.
2013: Marco Vilela; Sebastien Besson; Hunter Elliott; Klaus Hahn; Nadia Halidi; Jessica Tytell; Gaudenz Danuser
Fluctuation analysis of activity biosensor images for the study of information flow in signaling pathways.
Methods in enzymology 2013;519():253-76.
2012: Mei Rosa Ng; Gaudenz Danuser; Achim Besser; Joan S Brugge
Substrate stiffness regulates cadherin-dependent collective migration through myosin-II contractility.
The Journal of cell biology 2012;199(3):545-63.
2012: Michelle C Mendoza; Sebastien Besson; Gaudenz Danuser
Quantitative fluorescent speckle microscopy (QFSM) to measure actin dynamics.
Current protocols in cytometry / editorial board, J. Paul Robinson, managing editor ... [et al.] 2012;Chapter 2():Unit2.18.
2012: Dinah Loerke; matthias machacek; Emma Spanjaard; Iris Blonk; Gaudenz Danuser; Andre Kerstens; Quint le Duc; Johan de Rooij
Quantitative imaging of epithelial cell scattering identifies specific inhibitors of cell motility and cell-cell dissociation.
Science signaling 2012;5(231):rs5.
2012: Gerald F Reis; John T Robinson; Sameer B Shah; Lukasz Szpankowski; Carole Weaver; Ge Yang; Gaudenz Danuser; Thomas S Hays; Lawrence S B Goldstein
Molecular motor function in axonal transport in vivo probed by genetic and computational analysis in Drosophila.
Molecular biology of the cell 2012;23(9):1700-14.
2012: Christian Dittrich; Christoph J Burckhardt; Gaudenz Danuser
Delivery of membrane impermeable cargo into CHO cells by peptide nanoparticles targeted by a protein corona.
Biomaterials 2012;33(9):2746-53.
2012: Jason Swedlow; Gaudenz Danuser
Scale integration: the structure and dynamics of macromolecular assemblies, cells and tissues.
Current opinion in cell biology 2012;24(1):1-3.
2012: Yukako Nishimura; Kathryn Applegate; Gaudenz Danuser; Michael W Davidson; Clare M Waterman
Automated screening of microtubule growth dynamics identifies MARK2 as a regulator of leading edge microtubules downstream of Rac1 in migrating cells.
PloS one 2012;7(7):e41413.
2011: Daniel Nunez; Sandra L Schmid; Costin Antonescu; Allen Liu; Dinah Loerke; Marcel Mettlen; Gaudenz Danuser
Hotspots organize clathrin-mediated endocytosis by efficient recruitment and retention of nucleating resources.
Traffic (Copenhagen, Denmark) 2011;12(12):1868-78.
2011: Gaudenz Danuser
Computer vision in cell biology.
Cell 2011;147(5):973-8.
2011: Christopher M Welch; Gaudenz Danuser; Hunter Elliott; Klaus M Hahn
Imaging the coordination of multiple signalling activities in living cells.
Nature reviews. Molecular cell biology 2011;12(11):749-56.
2011: Kathryn T Applegate; Maria H Bagonis; Sebastien Besson; Khuloud Jaqaman; Alexandre Matov; Gaudenz Danuser
plusTipTracker: Quantitative image analysis software for the measurement of microtubule dynamics.
Journal of structural biology 2011;176(2):168-84.
2011: Marco Vilela; Gaudenz Danuser
What's wrong with correlative experiments?
Nature cell biology 2011;13(9):1011.
2011: Khuloud Jaqaman; Hirotaka Kuwata; Nicolas Touret; William S Trimble; Richard Collins; Gaudenz Danuser; Sergio Grinstein
Cytoskeletal control of CD36 diffusion promotes its receptor and signaling function.
Cell 2011;146(4):593-606.
2011: Marcin P Iwanicki; Melissa Merritt; Taru Muranen; Mei Rosa Ng; Tan Ince; Achim Besser; Gaudenz Danuser; Rachel A Davidowitz; Tan Ince; Joan S Brugge
Ovarian cancer spheroids use myosin-generated force to clear the mesothelium.
Cancer discovery 2011;1(2):144-57.
2011: Dinah Loerke; Marcel Mettlen; Sandra L Schmid; Gaudenz Danuser
Measuring the hierarchy of molecular events during clathrin-mediated endocytosis.
Traffic (Copenhagen, Denmark) 2011;12(7):815-25.
2011: Violaine D Delorme-Walker; Céline DerMardirossian; Jeffrey R Peterson; Clare M Waterman; Jonathan Chernoff; Gaudenz Danuser; Gary M Bokoch
Pak1 regulates focal adhesion strength, myosin IIA distribution, and actin dynamics to optimize cell migration.
The Journal of cell biology 2011;193(7):1289-303.
2011: Eugene Tkachenko; Mohsen Sabouri-Ghomi; Olivier Pertz; Chungho Kim; Edgar Gutierrez; matthias machacek; Alex Groisman; Gaudenz Danuser; Mark H Ginsberg
Protein kinase A governs a RhoA-RhoGDI protrusion-retraction pacemaker in migrating cells.
Nature cell biology 2011;13(6):660-7.
2011: Michelle C Mendoza; E Emrah Er; Wenjuan Zhang; Bryan A Ballif; Hunter L Elliott; Gaudenz Danuser; John Blenis
ERK-MAPK drives lamellipodia protrusion by activating the WAVE2 regulatory complex.
Molecular cell 2011;41(6):661-71.
2011: Kenneth A Myers; Kathryn T Applegate; Gaudenz Danuser; Robert S Fischer; Clare M Waterman
Distinct ECM mechanosensing pathways regulate microtubule dynamics to control endothelial cell branching morphogenesis.
The Journal of cell biology 2011;192(2):321-34.
2011: Edgar Gutierrez; Klaus Ley; Prithu Sundd; Eugene Tkachenko; Achim Besser; Gaudenz Danuser; Mark H Ginsberg; Alex Groisman
High refractive index silicone gels for simultaneous total internal reflection fluorescence and traction force microscopy of adherent cells.
PloS one 2011;6(9):e23807.
2010: Allen P Liu; François Aguet; Gaudenz Danuser; Sandra L Schmid
Local clustering of transferrin receptors promotes clathrin-coated pit initiation.
The Journal of cell biology 2010;191(7):1381-93.
2010: Claudio R Thoma; Alexandre Matov; Katrin L Gutbrodt; Christian R Hoerner; Zlatko Smole; Wilhelm Krek; Gaudenz Danuser
Quantitative image analysis identifies pVHL as a key regulator of microtubule dynamic instability.
The Journal of cell biology 2010;190(6):991-1003.
2010: Alexandre Matov; Kathryn Applegate; Praveen Kumar; Claudio Thoma; Wilhelm Krek; Gaudenz Danuser; Torsten Wittmann
Analysis of microtubule dynamic instability using a plus-end growth marker.
Nature methods 2010;7(9):761-8.
2010: Costin N Antonescu; Gaudenz Danuser; Sandra L Schmid
Phosphatidic acid plays a regulatory role in clathrin-mediated endocytosis.
Molecular biology of the cell 2010;21(16):2944-52.
2010: James I Lim; Mohsen Sabouri-Ghomi; matthias machacek; Clare M Waterman; Gaudenz Danuser
Protrusion and actin assembly are coupled to the organization of lamellar contractile structures.
Experimental cell research 2010;316(13):2027-41.
2010: Cyrus A Wilson; Mark A Tsuchida; Greg M Allen; Erin L Barnhart; Kathryn T Applegate; Patricia T Yam; Lin Ji; Kinneret Keren; Gaudenz Danuser; Julie A Theriot
Myosin II contributes to cell-scale actin network treadmilling through network disassembly.
Nature 2010;465(7296):373-7.
2010: Marcel Mettlen; Dinah Loerke; Defne Yarar; Gaudenz Danuser; Sandra L Schmid
Cargo- and adaptor-specific mechanisms regulate clathrin-mediated endocytosis.
The Journal of cell biology 2010;188(6):919-33.
2010: Khuloud Jaqaman; Emma M King; Ana C Amaro; Jennifer R Winter; Jonas F Dorn; Hunter L Elliott; Nunu McHedlishvili; Sarah E McClelland; Iain Porter; Markus Posch; Alberto Toso; Gaudenz Danuser; Andrew D McAinsh; Patrick Meraldi; Jason R Swedlow
Kinetochore alignment within the metaphase plate is regulated by centromere stiffness and microtubule depolymerases.
The Journal of cell biology 2010;188(5):665-79.
2010: Jesse Gatlin; Alexandre Matov; Gaudenz Danuser; Timothy J Mitchison; Edward D Salmon
Directly probing the mechanical properties of the spindle and its matrix.
The Journal of cell biology 2010;188(4):481-9.
2009: Khuloud Jaqaman; Gaudenz Danuser
Computational image analysis of cellular dynamics: a case study based on particle tracking.
Cold Spring Harbor protocols 2009;2009(12):pdb.top65.
2009: Benjamin Houghtaling; Ge Yang; Alexandre Matov; Gaudenz Danuser; Tarun M Kapoor
Op18 reveals the contribution of nonkinetochore microtubules to the dynamic organization of the vertebrate meiotic spindle.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(36):15338-43.
2009: matthias machacek; Louis Hodgson; Christopher Welch; Hunter Elliott; Olivier Pertz; Perihan Nalbant; Amy N Abell; Gary L Johnson; Klaus M Hahn; Gaudenz Danuser
Coordination of Rho GTPase activities during cell protrusion.
Nature 2009;461(7260):99-103.
2009: Allen P Liu; Dinah Loerke; Sandra L Schmid; Gaudenz Danuser
Global and local regulation of clathrin-coated pit dynamics detected on patterned substrates.
Biophysical journal 2009;97(4):1038-47.
2009: Marcel Mettlen; Miriam Stoeber; Dinah Loerke; Costin N Antonescu; Gaudenz Danuser; Sandra L Schmid
Endocytic accessory proteins are functionally distinguished by their differential effects on the maturation of clathrin-coated pits.
Molecular biology of the cell 2009;20(14):3251-60.
2009: Gaudenz Danuser
Testing the lamella hypothesis: the next steps on the agenda.
Journal of cell science 2009;122(Pt 12):1959-62.
2009: Praveen Kumar; Karen S Lyle; Sarah Gierke; Alexandre Matov; Gaudenz Danuser; Torsten Wittmann
GSK3beta phosphorylation modulates CLASP-microtubule association and lamella microtubule attachment.
The Journal of cell biology 2009;184(6):895-908.
2009: Dinah Loerke; Marcel Mettlen; Defne Yarar; Khuloud Jaqaman; Henry Jaqaman; Gaudenz Danuser; Sandra L Schmid
Cargo and dynamin regulate clathrin-coated pit maturation.
PLoS biology 2009;7(3):e57.
2009: Jesse Gatlin; Alexandre Matov; Aaron C Groen; Daniel J Needleman; Thomas J. Maresca; Gaudenz Danuser; Timothy J Mitchison; Edward D Salmon
Spindle fusion requires dynein-mediated sliding of oppositely oriented microtubules.
Current biology : CB 2009;19(4):287-96.
2009: James Lim; Gaudenz Danuser
Live cell imaging of F-actin dynamics via Fluorescent Speckle Microscopy (FSM).
Journal of visualized experiments : JoVE 2009;(30):.
2008: Lin Ji; James Lim; Gaudenz Danuser
Fluctuations of intracellular forces during cell protrusion.
Nature cell biology 2008;10(12):1393-400.
2008: Mohsen Sabouri-Ghomi; Yi I Wu; Klaus M Hahn; Gaudenz Danuser
Visualizing and quantifying adhesive signals.
Current opinion in cell biology 2008;20(5):541-50.
2008: Ge Yang; Lisa A Cameron; Maddox Paul; Edward D Salmon; Gaudenz Danuser
Regional variation of microtubule flux reveals microtubule organization in the metaphase meiotic spindle.
The Journal of cell biology 2008;182(4):631-9.
2008: Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Robust single-particle tracking in live-cell time-lapse sequences.
Nature methods 2008;5(8):695-702.
2008: Dylan T Burnette; Lin Ji; Andrew W Schaefer; Nelson A Medeiros; Gaudenz Danuser; Paul Forscher
Myosin II activity facilitates microtubule bundling in the neuronal growth cone neck.
Developmental cell 2008;15(1):163-9.
2008: Andrew W Schaefer; Vincent Th G Schoonderwoert; Lin Ji; Nelson Mederios; Gaudenz Danuser; Paul Forscher
Coordination of actin filament and microtubule dynamics during neurite outgrowth.
Developmental cell 2008;15(1):146-62.
2008: Jonas F Dorn; Gaudenz Danuser; Ge Yang
Computational processing and analysis of dynamic fluorescence image data.
Methods in cell biology 2008;85():497-538.
2007: Dylan T Burnette; Andrew W Schaefer; Lin Ji; Gaudenz Danuser; Paul Forscher
Filopodial actin bundles are not necessary for microtubule advance into the peripheral domain of Aplysia neuronal growth cones.
Nature cell biology 2007;9(12):1360-9.
2007: Violaine Delorme; matthias machacek; Céline DerMardirossian; Karen L Anderson; Torsten Wittmann; Dorit Hanein; Clare M Waterman-Storer; Gaudenz Danuser; Gary M Bokoch
Cofilin activity downstream of Pak1 regulates cell protrusion efficiency by organizing lamellipodium and lamella actin networks.
Developmental cell 2007;13(5):646-62.
2007: Ge Yang; Benjamin Houghtaling; Jedidiah Gaetz; Jenny Z Liu; Gaudenz Danuser; Tarun M Kapoor
Architectural dynamics of the meiotic spindle revealed by single-fluorophore imaging.
Nature cell biology 2007;9(11):1233-42.
2007: Gabor Csucs; Katharina Quirin; Gaudenz Danuser
Locomotion of fish epidermal keratocytes on spatially selective adhesion patterns.
Cell motility and the cytoskeleton 2007;64(11):856-67.
2007: Patricia T Yam; Cyrus A Wilson; Lin Ji; Benedict Hebert; Erin L Barnhart; Natalie A Dye; Paul Wiseman; Gaudenz Danuser; Julie A Theriot
Actin-myosin network reorganization breaks symmetry at the cell rear to spontaneously initiate polarized cell motility.
The Journal of cell biology 2007;178(7):1207-21.
2007: Khuloud Jaqaman; Jonas F Dorn; E Marco; Peter K Sorger; Gaudenz Danuser
Phenotypic clustering of yeast mutants based on kinetochore microtubule dynamics.
Bioinformatics (Oxford, England) 2007;23(13):1666-73.
2007: Evi Soutoglou; Jonas F Dorn; Kundan Sengupta; Maria Jasin; André Nussenzweig; Thomas Ried; Gaudenz Danuser; Tom Misteli
Positional stability of single double-strand breaks in mammalian cells.
Nature cell biology 2007;9(6):675-82.
2007: Ke Hu; Lin Ji; Kathryn T Applegate; Gaudenz Danuser; Clare M Waterman-Storer
Differential transmission of actin motion within focal adhesions.
Science (New York, N.Y.) 2007;315(5808):111-5.
2007: Lin Ji; Dinah Loerke; Margaret Gardel; Gaudenz Danuser
Probing intracellular force distributions by high-resolution live cell imaging and inverse dynamics.
Methods in cell biology 2007;83():199-235.
2006: Khuloud Jaqaman; Gaudenz Danuser
Linking data to models: data regression.
Nature reviews. Molecular cell biology 2006;7(11):813-9.
2006: Khuloud Jaqaman; Jonas F Dorn; Gregory S Jelson; Jessica D Tytell; Peter K Sorger; Gaudenz Danuser
Comparative autoregressive moving average analysis of kinetochore microtubule dynamics in yeast.
Biophysical journal 2006;91(6):2312-25.
2006: Lisa A Cameron; Ge Yang; Daniela Cimini; Julie C Canman; Olga Kisurina-Evgenieva; Alexey Khodjakov; Gaudenz Danuser; Edward D Salmon
Kinesin 5-independent poleward flux of kinetochore microtubules in PtK1 cells.
The Journal of cell biology 2006;173(2):173-9.
2006: matthias machacek; Gaudenz Danuser
Morphodynamic profiling of protrusion phenotypes.
Biophysical journal 2006;90(4):1439-52.
2006: Gaudenz Danuser; Clare M Waterman-Storer
Quantitative fluorescent speckle microscopy of cytoskeleton dynamics.
Annual review of biophysics and biomolecular structure 2006;35():361-87.
2005: L Ji; Gaudenz Danuser
Tracking quasi-stationary flow of weak fluorescent signals by adaptive multi-frame correlation.
Journal of microscopy 2005;220(Pt 3):150-67.
2005: Gaudenz Danuser
Coupling the dynamics of two actin networks--new views on the mechanics of cell protrusion.
Biochemical Society transactions 2005;33(Pt 6):1250-3.
2005: Aaron Ponti; Alexandre Matov; M Adams; Stephanie L Gupton; Clare M Waterman-Storer; Gaudenz Danuser
Periodic patterns of actin turnover in lamellipodia and lamellae of migrating epithelial cells analyzed by quantitative Fluorescent Speckle Microscopy.
Biophysical journal 2005;89(5):3456-69.
2005: Johan de Rooij; Andre Kerstens; Gaudenz Danuser; Martin A Schwartz; Clare M Waterman-Storer
Integrin-dependent actomyosin contraction regulates epithelial cell scattering.
The Journal of cell biology 2005;171(1):153-64.
2005: Jonas F Dorn; Khuloud Jaqaman; Daniel R Rines; Gregory S Jelson; Peter K Sorger; Gaudenz Danuser
Yeast kinetochore microtubule dynamics analyzed by high-resolution three-dimensional microscopy.
Biophysical journal 2005;89(4):2835-54.
2005: Pascal Vallotton; Gaudenz Danuser; Sophie Bohnet; Jean-Jacques Meister; Alexander B Verkhovsky
Tracking retrograde flow in keratocytes: news from the front.
Molecular biology of the cell 2005;16(3):1223-31.
2005: Stephanie L Gupton; Karen L Anderson; Thomas P Kole; Robert S Fischer; Aaron Ponti; Sarah E Hitchcock-DeGregori; Gaudenz Danuser; Velia M Fowler; Denis Wirtz; Dorit Hanein; Clare M Waterman-Storer
Cell migration without a lamellipodium: translation of actin dynamics into cell movement mediated by tropomyosin.
The Journal of cell biology 2005;168(4):619-31.
2004: Michael C Adams; Alexandre Matov; Defne Yarar; Stephanie L Gupton; Gaudenz Danuser; Clare M Waterman-Storer
Signal analysis of total internal reflection fluorescent speckle microscopy (TIR-FSM) and wide-field epi-fluorescence FSM of the actin cytoskeleton and focal adhesions in living cells.
Journal of microscopy 2004;216(Pt 2):138-52.
2004: Aaron Ponti; matthias machacek; Stephanie L Gupton; Clare M Waterman-Storer; Gaudenz Danuser
Two distinct actin networks drive the protrusion of migrating cells.
Science (New York, N.Y.) 2004;305(5691):1782-6.
2004: Pascal Vallotton; Stephanie L Gupton; Clare M Waterman-Storer; Gaudenz Danuser
Simultaneous mapping of filamentous actin flow and turnover in migrating cells by quantitative fluorescent speckle microscopy.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(26):9660-5.
2003: D Thomann; J Dorn; Peter K Sorger; Gaudenz Danuser
Automatic fluorescent tag localization II: Improvement in super-resolution by relative tracking.
Journal of microscopy 2003;211(Pt 3):230-48.
2003: Gaudenz Danuser; Clare M Waterman-Storer
Quantitative fluorescent speckle microscopy: where it came from and where it is going.
Journal of microscopy 2003;211(Pt 3):191-207.
2003: Pascal Vallotton; Aaron Ponti; Clare M Waterman-Storer; E D Salmon; Gaudenz Danuser
Recovery, visualization, and analysis of actin and tubulin polymer flow in live cells: a fluorescent speckle microscopy study.
Biophysical journal 2003;85(2):1289-306.
2003: M Müller; Janos Vörös; Gábor Csúcs; Elke Walter; Gaudenz Danuser; Hans P Merkle; Nicholas D Spencer; Marcus Textor
Surface modification of PLGA microspheres.
Journal of biomedical materials research. Part A 2003;66(1):55-61.
2003: Claude Berney; Gaudenz Danuser
FRET or no FRET: a quantitative comparison.
Biophysical journal 2003;84(6):3992-4010.
2003: Aaron Ponti; Pascal Vallotton; Wendy C Salmon; Clare M Waterman-Storer; Gaudenz Danuser
Computational analysis of F-actin turnover in cortical actin meshworks using fluorescent speckle microscopy.
Biophysical journal 2003;84(5):3336-52.
2003: Gabor Csucs; Roger Michel; Jost W Lussi; Marcus Textor; Gaudenz Danuser
Microcontact printing of novel co-polymers in combination with proteins for cell-biological applications.
Biomaterials 2003;24(10):1713-20.
2003: Colin A Scotchford; M Ball; M Winkelmann; Janos Vörös; C Csucs; Donald Brunette; Gaudenz Danuser; Marcus Textor
Chemically patterned, metal-oxide-based surfaces produced by photolithographic techniques for studying protein- and cell-interactions. II: Protein adsorption and early cell interactions.
Biomaterials 2003;24(7):1147-58.
2002: D Thomann; Daniel R Rines; Peter K Sorger; Gaudenz Danuser
Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement.
Journal of microscopy 2002;208(Pt 1):49-64.
2002: Clare M Waterman-Storer; Gaudenz Danuser
New directions for fluorescent speckle microscopy.
Current biology : CB 2002;12(18):R633-40.
2002: Jachen Denoth; Edgar Stüssi; Gabor Csucs; Gaudenz Danuser
Single muscle fiber contraction is dictated by inter-sarcomere dynamics.
Journal of theoretical biology 2002;216(1):101-22.