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Sean Daugherty

Research Profile

Genes & Molecular Sequences

Concepts & Ideas

Procedures

Sequence Analysis, DNA

Chemicals & Drugs

Living Beings

Occupations

Genomics

Phenomena

Physiology

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Publications

TOP 3
Hervé Tettelin; Patricia Conville; Sean C Daugherty; Claire M Fraser-Liggett; Erin Hine; Steven M Holland; Kenneth N Olivier; David R Riley; Lisa Sadzewicz; Elizabeth P Sampaio; Naomi A Sengamalay; Kent Shefchek; Qi Su; Luke J Tallon; Adrian M Zelazny
Genomic insights into the emerging human pathogen Mycobacterium massiliense.
Mary G Krauland; Jane W Marsh; Leonard W Mayer; Nancy E Messonnier; David R Riley; Hervé Tettelin; Sean C Daugherty; Julie C Hotopp; Lee H Harrison
Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States.
Sonia Budroni; Emilio Siena; Kate L Seib; Davide Serruto; Chiara Nofroni; Maurizio Comanducci; David R Riley; Sean C Daugherty; Samuel V Angiuoli; Antonello Covacci; Mariagrazia Pizza; Rino Rappuoli; E Richard Moxon; Hervé Tettelin; Julie C Hotopp; Duccio Medini
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.

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All Publications

2012: Hervé Tettelin; Patricia Conville; Sean C Daugherty; Claire M Fraser-Liggett; Erin Hine; Steven M Holland; Kenneth N Olivier; David R Riley; Lisa Sadzewicz; Elizabeth P Sampaio; Naomi A Sengamalay; Kent Shefchek; Qi Su; Luke J Tallon; Adrian M Zelazny
Genomic insights into the emerging human pathogen Mycobacterium massiliense.
Journal of bacteriology 2012;194(19):5450.
2012: Mary G Krauland; Jane W Marsh; Leonard W Mayer; Nancy E Messonnier; David R Riley; Hervé Tettelin; Sean C Daugherty; Julie C Hotopp; Lee H Harrison
Whole genome sequencing to investigate the emergence of clonal complex 23 Neisseria meningitidis serogroup Y disease in the United States.
PloS one 2012;7(4):e35699.
2011: Sonia Budroni; Emilio Siena; Kate L Seib; Davide Serruto; Chiara Nofroni; Maurizio Comanducci; David R Riley; Sean C Daugherty; Samuel V Angiuoli; Antonello Covacci; Mariagrazia Pizza; Rino Rappuoli; E Richard Moxon; Hervé Tettelin; Julie C Hotopp; Duccio Medini
Neisseria meningitidis is structured in clades associated with restriction modification systems that modulate homologous recombination.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(11):4494-9.
2008: Meng Qi; Karen E Nelson; Sean C Daugherty; William C Nelson; Ioana R Hance; M Morrison; Cecil W Forsberg
Genomic differences between Fibrobacter succinogenes S85 and Fibrobacter intestinalis DR7, identified by suppression subtractive hybridization.
Applied and environmental microbiology 2008;74(4):987-93.
2007: Nir Shapir; Emmanuel F Mongodin; Michael J Sadowsky; Sean C Daugherty; Karen E Nelson; Lawrence P Wackett
Evolution of catabolic pathways: Genomic insights into microbial s-triazine metabolism.
Journal of bacteriology 2007;189(3):674-82.
2006: Emmanuel F Mongodin; Nir Shapir; Sean C Daugherty; Robert T Deboy; Joanne B Emerson; Alla Shvartzbeyn; Diana Radune; Jessica Vamathevan; Florenta Riggs; Viktoria Grinberg; Hoda Khouri; Lawrence P Wackett; Karen E Nelson; Michael J Sadowsky
Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.
PLoS genetics 2006;2(12):e214.
2006: Jonathan H Badger; Timothy R Hoover; Yves V Brun; Ronald M Weiner; Michael T Laub; Gladys Alexandre; Jan Mrázek; Qinghu Ren; Ian Paulsen; Karen E Nelson; Hoda Khouri; Diana Radune; Julia Sosa; Robert J Dodson; Steven A Sullivan; Mary J Rosovitz; Ramana Madupu; Lauren M Brinkac; A Scott Durkin; Sean C Daugherty; Sagar P Kothari; Michelle G Giglio; Liwei Zhou; Daniel H Haft; Jeremy D Selengut; Tanja M Davidsen; Qi Yang; Nikhat Zafar; Naomi L Ward
Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.
Journal of bacteriology 2006;188(19):6841-50.
2006: Brian Palenik; Qinghu Ren; Chris L Dupont; Garry S A Myers; John F Heidelberg; Jonathan H Badger; Ramana Madupu; William C Nelson; Lauren M Brinkac; Robert J Dodson; A Scott Durkin; Sean C Daugherty; Steven A Sullivan; Hoda Khouri; Yasmin Mohamoud; Rebecca Halpin; Ian Paulsen
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(36):13555-9.
2006: Dongying Wu; Sean C Daugherty; Susan E Van Aken; Grace H Pai; Kisha L Watkins; Hoda Khouri; Luke J Tallon; Jennifer Zaborsky; Helen E Dunbar; Phat L Tran; Nancy Moran; Jonathan Eisen
Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters.
PLoS biology 2006;4(6):e188.
2005: Emmanuel F Mongodin; Karen E Nelson; Sean C Daugherty; Robert T Deboy; J Wister; Hoda Khouri; Janice Weidman; David A Walsh; R Thane Papke; Gabino Sanchez-Perez; Adrian K Sharma; Camilla L Nesbø; Dave MacLeod; Eric Bapteste; W Ford Doolittle; Robert L Charlebois; Boris A Legault; Francisco Rodriguez-Valera
The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(50):18147-52.
2005: Martin Wu; Qinghu Ren; A Scott Durkin; Sean C Daugherty; Lauren M Brinkac; Robert J Dodson; Ramana Madupu; Steven A Sullivan; James F Kolonay; Daniel H Haft; William C Nelson; Luke J Tallon; Kristine M Jones; Luke E Ulrich; Juan M Gonzalez; Igor B Zhulin; Frank Thomson Robb; Jonathan Eisen
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.
PLoS genetics 2005;1(5):e65.
2005: Barbara A Methé; Karen E Nelson; Jody W Deming; Bahram Momen; Eugene Melamud; Xijun Zhang; John Moult; Ramana Madupu; William C Nelson; Robert J Dodson; Lauren M Brinkac; Sean C Daugherty; A Scott Durkin; Robert T Deboy; James F Kolonay; Steven A Sullivan; Liwei Zhou; Tanja M Davidsen; Martin Wu; Adrienne L Huston; Matthew Lewis; Bruce Weaver; Janice Weidman; Hoda Khouri; Teresa Utterback; Tamara Feldblyum; Claire M Fraser-Liggett
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(31):10913-8.
2005: Emmanuel F Mongodin; Ioana R Hance; Robert T Deboy; Steven R Gill; Sean C Daugherty; Robert Huber; Claire M Fraser-Liggett; Karl Stetter; Karen E Nelson
Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species.
Journal of bacteriology 2005;187(14):4935-44.
2005: Ian Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T Deboy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Steven A Sullivan; Mary J Rosovitz; Michelle G Giglio; Liwei Zhou; Davd J Schneider; Samuel Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Nature biotechnology 2005;23(7):873-8.
2005: Meng Qi; Karen E Nelson; Sean C Daugherty; William C Nelson; Ioana R Hance; Mark Morrison; Cecil W Forsberg
Novel molecular features of the fibrolytic intestinal bacterium Fibrobacter intestinalis not shared with Fibrobacter succinogenes as determined by suppressive subtractive hybridization.
Journal of bacteriology 2005;187(11):3739-51.
2005: Steven R Gill; Derrick E Fouts; Gordon L Archer; Emmanuel F Mongodin; Robert T Deboy; Jacques Ravel; Ian Paulsen; James F Kolonay; Lauren M Brinkac; Maureen J Beanan; Robert J Dodson; Sean C Daugherty; Ramana Madupu; Samuel V Angiuoli; A Scott Durkin; Daniel H Haft; Jessica Vamathevan; Hoda Khouri; Teresa Utterback; Chris Lee; George Dimitrov; Lingxia Jiang; Haiying Qin; Janice Weidman; Kevin Tran; Kathy Kang; Ioana R Hance; Karen E Nelson; Claire M Fraser-Liggett
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.
Journal of bacteriology 2005;187(7):2426-38.
2005: Rekha Seshadri; Lorenz Adrian; Derrick E Fouts; Jonathan Eisen; Adam M Phillippy; Barbara A Methe; Naomi L Ward; William C Nelson; Robert T Deboy; Hoda Khouri; James F Kolonay; Robert J Dodson; Sean C Daugherty; Lauren M Brinkac; Steven A Sullivan; Ramana Madupu; Karen E Nelson; Katherine H Kang; Marjorie Impraim; Kevin Tran; Jeffrey M Robinson; Heather A Forberger; Claire M Fraser-Liggett; Stephen H Zinder; John F Heidelberg
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.
Science (New York, N.Y.) 2005;307(5706):105-8.
2005: Derrick E Fouts; Emmanuel F Mongodin; Robert Mandrell; William G Miller; David Rasko; Jacques Ravel; Lauren M Brinkac; Robert T Deboy; Craig T Parker; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Ramana Madupu; Steven A Sullivan; Jyoti U Shetty; Mobolanle A Ayodeji; Alla Shvartsbeyn; Michael C Schatz; Jonathan H Badger; Claire M Fraser-Liggett; Karen E Nelson
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.
PLoS biology 2005;3(1):e15.
2004: Martin Wu; Ling V Sun; Jessica Vamathevan; Markus Riegler; Robert T Deboy; Jeremy C Brownlie; Elizabeth A McGraw; William Martin; Christian Esser; Nahal Ahmadinejad; Christian Wiegand; Ramana Madupu; Maureen J Beanan; Lauren M Brinkac; Sean C Daugherty; A Scott Durkin; James F Kolonay; William C Nelson; Yasmin Mohamoud; Perris Lee; Kristi Berry; M Brook Young; Teresa Utterback; Janice Weidman; William C Nierman; Ian Paulsen; Karen E Nelson; Hervé Tettelin; Scott L O'Neill; Jonathan Eisen
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
PLoS biology 2004;2(3):E69.
2003: Karen E Nelson; Robert D Fleischmann; Robert T Deboy; Ian Paulsen; Derrick E Fouts; Jonathan Eisen; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Michelle G Giglio; Daniel H Haft; James F Kolonay; William C Nelson; Tanya Mason; Luke J Tallon; Jessica Gray; David Granger; Hervé Tettelin; Hong Dong; Jamie L Galvin; Margaret J Duncan; Floyd E Dewhirst; Claire M Fraser-Liggett
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.
Journal of bacteriology 2003;185(18):5591-601.
2003: Rekha Seshadri; Ian Paulsen; Jonathan Eisen; Timothy D Read; Karen E Nelson; William C Nelson; Naomi L Ward; Hervé Tettelin; Tanja M Davidsen; Maureen J Beanan; Robert T Deboy; Sean C Daugherty; Lauren M Brinkac; Ramana Madupu; Robert J Dodson; Hoda Khouri; Kathy H Lee; Heather A Carty; David Scanlan; Robert A Heinzen; Herbert A Thompson; James E Samuel; Claire M Fraser-Liggett; John F Heidelberg
Complete genome sequence of the Q-fever pathogen Coxiella burnetii.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):5455-60.