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Eric Davidson

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Publications

TOP 3
Cameron R Andrew; Davidson Eric H
Flexibility of transcription factor target site position in conserved cis-regulatory modules.
Smith Joel; Davidson Eric H
Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring.
Li Enhu; Davidson Eric H
Building developmental gene regulatory networks.

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All Publications

2009: Cameron R Andrew; Davidson Eric H
Flexibility of transcription factor target site position in conserved cis-regulatory modules.
Developmental biology 2009;336(1):122-35.
2009: Smith Joel; Davidson Eric H
Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(43):18291-6.
2009: Li Enhu; Davidson Eric H
Building developmental gene regulatory networks.
Birth defects research. Part C, Embryo today : reviews 2009;87(2):123-30.
2009: Su Yi-Hsien; Li Enhu; Geiss Gary K; Longabaugh William J R; Krämer Alexander; Davidson Eric H
A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo.
Developmental biology 2009;329(2):410-21.
2009: Davidson Eric H
Developmental biology at the systems level.
Biochimica et biophysica acta 2009;1789(4):248-9.
2009: Longabaugh William J R; Davidson Eric H; Bolouri Hamid
Visualization, documentation, analysis, and communication of large-scale gene regulatory networks.
Biochimica et biophysica acta 2009;1789(4):363-74.
2009: Ben-Tabou de-Leon Smadar; Davidson Eric H
Modeling the dynamics of transcriptional gene regulatory networks for animal development.
Developmental biology 2009;325(2):317-28.
2009: Peter Isabelle S; Davidson Eric H
Genomic control of patterning.
The International journal of developmental biology 2009;53(5-6):707-16.
2008: Smith Joel; Davidson Eric H
A new method, using cis-regulatory control, for blocking embryonic gene expression.
Developmental biology 2008;318(2):360-5.
2008: Oliveri Paola; Tu Qiang; Davidson Eric H
Global regulatory logic for specification of an embryonic cell lineage.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(16):5955-62.
2008: Gao Feng; Davidson Eric H
Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(16):6091-6.
2007: Hinman Veronica F; Davidson Eric H
Evolutionary plasticity of developmental gene regulatory network architecture.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(49):19404-9.
2007: Hinman Veronica F; Nguyen Albert; Davidson Eric H
Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins.
Developmental biology 2007;312(2):584-95.
2007: Andrew Cameron R; Davidson Eric H
A basal deuterostome genome viewed as a natural experiment.
Gene 2007;406(1-2):1-7.
2007: Smith Joel; Theodoris Christina; Davidson Eric H
A gene regulatory network subcircuit drives a dynamic pattern of gene expression.
Science (New York, N.Y.) 2007;318(5851):794-7.
2007: Istrail Sorin; De-Leon Smadar Ben-Tabou; Davidson Eric H
The regulatory genome and the computer.
Developmental biology 2007;310(2):187-95.
2007: Materna Stefan C; Davidson Eric H
Logic of gene regulatory networks.
Current opinion in biotechnology 2007;18(4):351-4.
2007: Revilla-i-Domingo Roger; Oliveri Paola; Davidson Eric H
A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(30):12383-8.
2007: Lee Pei Yun; Nam Jongmin; Davidson Eric H
Exclusive developmental functions of gatae cis-regulatory modules in the Strongylocentrorus purpuratus embryo.
Developmental biology 2007;307(2):434-45.
2007: Nam Jongmin; Su Yi-Hsien; Lee Pei Yun; Robertson Anthony J; Coffman James A; Davidson Eric H
Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network.
Developmental biology 2007;306(2):860-9.
2007: Oliveri Paola; Davidson Eric H
Development. Built to run, not fail.
Science (New York, N.Y.) 2007;315(5818):1510-1.
2007: Livi Carolina B; Davidson Eric H
Regulation of spblimp1/krox1a, an alternatively transcribed isoform expressed in midgut and hindgut of the sea urchin gastrula.
Gene expression patterns : GEP 2007;7(1-2):1-7.
2007: Ben-Tabou de-Leon Smadar; Davidson Eric H
Gene regulation: gene control network in development.
Annual review of biophysics and biomolecular structure 2007;36():191.
2006: Howard-Ashby Meredith; Materna Stefan C; Brown C Titus; Tu Qiang; Oliveri Paola; Cameron R Andrew; Davidson Eric H
High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution.
Developmental biology 2006;300(1):27-34.
2006: Tu Qiang; Brown C Titus; Davidson Eric H; Oliveri Paola
Sea urchin Forkhead gene family: phylogeny and embryonic expression.
Developmental biology 2006;300(1):49-62.
2006: Howard-Ashby Meredith; Materna Stefan C; Brown C Titus; Chen Lili; Cameron R Andrew; Davidson Eric H
Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development.
Developmental biology 2006;300(1):74-89.
2006: Howard-Ashby Meredith; Materna Stefan C; Brown C Titus; Chen Lili; Cameron R Andrew; Davidson Eric H
Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus.
Developmental biology 2006;300(1):90-107.
2006: Materna Stefan C; Howard-Ashby Meredith; Gray Rachel F; Davidson Eric H
The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development.
Developmental biology 2006;300(1):108-20.
2006: Ben-Tabou de-Leon Smadar; Davidson Eric H
Deciphering the underlying mechanism of specification and differentiation: the sea urchin gene regulatory network.
Science's STKE : signal transduction knowledge environment 2006;2006(361):pe47.
2006: Samanta Manoj P; Tongprasit Waraporn; Istrail Sorin; Cameron R Andrew; Tu Qiang; Davidson Eric H; Stolc Viktor
The transcriptome of the sea urchin embryo.
Science (New York, N.Y.) 2006;314(5801):960-2.
2006: Bottjer David J; Davidson Eric H; Peterson Kevin J; Cameron R Andrew
Paleogenomics of echinoderms.
Science (New York, N.Y.) 2006;314(5801):956-60.
2006: Davidson Eric H
The sea urchin genome: where will it lead us?
Science (New York, N.Y.) 2006;314(5801):939-40.
2006: Oliveri Paola; Walton Katherine D; Davidson Eric H; McClay David R
Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo.
Development (Cambridge, England) 2006;133(21):4173-81.
2006: Damle Sagar; Hanser Bridget; Davidson Eric H; Fraser Scott E
Confocal quantification of cis-regulatory reporter gene expression in living sea urchin.
Developmental biology 2006;299(2):543-50.
2006: Arenas-Mena César; Cameron R Andrew; Davidson Eric H
Hindgut specification and cell-adhesion functions of Sphox11/13b in the endoderm of the sea urchin embryo.
Development, growth & differentiation 2006;48(7):463-72.
2006: Ransick Andrew; Davidson Eric H
cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification.
Developmental biology 2006;297(2):587-602.
2006: Chen Jun-Yuan; Bottjer David J; Davidson Eric H; Dornbos Stephen Q; Gao Xiang; Yang Yong-Hua; Li Chia-Wei; Li Gang; Wang Xiu-Qiang; Xian Ding-Chang; Wu Hung-Jen; Hwu Yeu-Kuang; Tafforeau Paul
Phosphatized polar lobe-forming embryos from the Precambrian of southwest China.
Science (New York, N.Y.) 2006;312(5780):1644-6.
2006: Livi Carolina B; Davidson Eric H
Expression and function of blimp1/krox, an alternatively transcribed regulatory gene of the sea urchin endomesoderm network.
Developmental biology 2006;293(2):513-25.
2006: Amore Gabriele; Davidson Eric H
cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo.
Developmental biology 2006;293(2):555-64.
2006: Davidson Eric H; Erwin Douglas H
Gene regulatory networks and the evolution of animal body plans.
Science (New York, N.Y.) 2006;311(5762):796-800.
2006: Cameron R Andrew; Rowen Lee; Nesbitt Ryan; Bloom Scott; Rast Jonathan P; Berney Kevin; Arenas-Mena Cesar; Martinez Pedro; Lucas Susan; Richardson Paul M; Davidson Eric H; Peterson Kevin J; Hood Leroy
Unusual gene order and organization of the sea urchin hox cluster.
Journal of experimental zoology. Part B, Molecular and developmental evolution 2006;306(1):45-58.
2005: Minokawa Takuya; Wikramanayake Athula H; Davidson Eric H
cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network.
Developmental biology 2005;288(2):545-58.
2005: Cameron R Andrew; Chow Suk Hen; Berney Kevin; Chiu Tsz-Yeung; Yuan Qiu-Autumn; Krämer Alexander; Helguero Argelia; Ransick Andrew; Yun Mirong; Davidson Eric H
An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(33):11769-74.
2005: Longabaugh William J R; Davidson Eric H; Bolouri Hamid
Computational representation of developmental genetic regulatory networks.
Developmental biology 2005;283(1):1-16.
2005: Yuh Chiou-Hwa; Dorman Elizabeth R; Davidson Eric H
Brn1/2/4, the predicted midgut regulator of the endo16 gene of the sea urchin embryo.
Developmental biology 2005;281(2):286-98.
2005: Istrail Sorin; Davidson Eric H
Logic functions of the genomic cis-regulatory code.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(14):4954-9.
2005: Otim Ochan; Hinman Veronica F; Davidson Eric H
Expression of AmHNF6, a sea star orthologue of a transcription factor with multiple distinct roles in sea urchin development.
Gene expression patterns : GEP 2005;5(3):381-6.
2005: Brown C Titus; Xie Yuan; Davidson Eric H; Cameron R Andrew
Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison.
BMC bioinformatics 2005;6():70.
2004: Lee Pei Yun; Davidson Eric H
Expression of Spgatae, the Strongylocentrotus purpuratus ortholog of vertebrate GATA4/5/6 factors.
Gene expression patterns : GEP 2004;5(2):161-5.
2004: Revilla-i-Domingo Roger; Minokawa Takuya; Davidson Eric H
R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres.
Developmental biology 2004;274(2):438-51.
2004: Otim Ochan; Amore Gabriele; Minokawa Takuya; McClay David R; Davidson Eric H
SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis.
Developmental biology 2004;273(2):226-43.
2004: Oliveri Paola; Davidson Eric H
Gene regulatory network controlling embryonic specification in the sea urchin.
Current opinion in genetics & development 2004;14(4):351-60.
2004: Howard Meredith L; Davidson Eric H
cis-Regulatory control circuits in development.
Developmental biology 2004;271(1):109-18.
2004: Minokawa Takuya; Rast Jonathan P; Arenas-Mena Cesar; Franco Christopher B; Davidson Eric H
Expression patterns of four different regulatory genes that function during sea urchin development.
Gene expression patterns : GEP 2004;4(4):449-56.
2004: Chen Jun-Yuan; Bottjer David J; Oliveri Paola; Dornbos Stephen Q; Gao Feng; Ruffins Seth; Chi Huimei; Li Chia-Wei; Davidson Eric H
Small bilaterian fossils from 40 to 55 million years before the cambrian.
Science (New York, N.Y.) 2004;305(5681):218-22.
2004: Yuh Chiou-Hwa; Dorman Elizabeth R; Howard Meredith L; Davidson Eric H
An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network.
Developmental biology 2004;269(2):536-51.
2004: Cameron R Andrew; Oliveri Paola; Wyllie Jane; Davidson Eric H
cis-Regulatory activity of randomly chosen genomic fragments from the sea urchin.
Gene expression patterns : GEP 2004;4(2):205-13.
2004: Oliveri Paola; Davidson Eric H
Gene regulatory network analysis in sea urchin embryos.
Methods in cell biology 2004;74():775-94.
2003: Hinman Veronica F; Nguyen Albert T; Cameron R Andrew; Davidson Eric H
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(23):13356-61.
2003: Hinman Veronica F; Nguyen Albert T; Davidson Eric H
Expression and function of a starfish Otx ortholog, AmOtx: a conserved role for Otx proteins in endoderm development that predates divergence of the eleutherozoa.
Mechanisms of development 2003;120(10):1165-76.
2003: Calestani Cristina; Rast Jonathan P; Davidson Eric H
Isolation of pigment cell specific genes in the sea urchin embryo by differential macroarray screening.
Development (Cambridge, England) 2003;130(19):4587-96.
2003: Amore Gabriele; Yavrouian Robert G; Peterson Kevin J; Ransick Andrew; McClay David R; Davidson Eric H
Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks.
Developmental biology 2003;261(1):55-81.
2003: Hinman Veronica F; Davidson Eric H
Expression of AmKrox, a starfish ortholog of a sea urchin transcription factor essential for endomesodermal specification.
Gene expression patterns : GEP 2003;3(4):423-6.
2003: Hinman Veronica F; Davidson Eric H
Expression of a gene encoding a Gata transcription factor during embryogenesis of the starfish Asterina miniata.
Gene expression patterns : GEP 2003;3(4):419-22.
2003: Bolouri Hamid; Davidson Eric H
Transcriptional regulatory cascades in development: initial rates, not steady state, determine network kinetics.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(16):9371-6.
2003: Oliveri Paola; Davidson Eric H; McClay David R
Activation of pmar1 controls specification of micromeres in the sea urchin embryo.
Developmental biology 2003;258(1):32-43.
2003: Davidson Eric H; McClay David R; Hood Leroy
Regulatory gene networks and the properties of the developmental process.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(4):1475-80.
2003: Revilla-i-Domingo Roger; Davidson Eric H
Developmental gene network analysis.
The International journal of developmental biology 2003;47(7-8):695-703.
2002: Bolouri Hamid; Davidson Eric H
Modeling transcriptional regulatory networks.
BioEssays : news and reviews in molecular, cellular and developmental biology 2002;24(12):1118-29.
2002: Dmochowski Ivan J; Dmochowski Jane E; Oliveri Paola; Davidson Eric H; Fraser Scott E
Quantitative imaging of cis-regulatory reporters in living embryos.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(20):12895-900.
2002: Chen Jun-Yuan; Oliveri Paola; Gao Feng; Dornbos Stephen Q; Li Chia-Wei; Bottjer David J; Davidson Eric H
Precambrian animal life: probable developmental and adult cnidarian forms from Southwest China.
Developmental biology 2002;248(1):182-96.
2002: Oliveri Paola; Carrick Deanna M; Davidson Eric H
A regulatory gene network that directs micromere specification in the sea urchin embryo.
Developmental biology 2002;246(1):209-28.
2002: Rast Jonathan P; Cameron R Andrew; Poustka Albert J; Davidson Eric H
brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening.
Developmental biology 2002;246(1):191-208.
2002: Davidson Eric H; Rast Jonathan P; Oliveri Paola; Ransick Andrew; Calestani Cristina; Yuh Chiou-Hwa; Minokawa Takuya; Amore Gabriele; Hinman Veronica; Arenas-Mena César; Otim Ochan; Brown C Titus; Livi Carolina B; Lee Pei Yun; Revilla Roger; Schilstra Maria J; Clarke Peter J C; Rust Alistair G; Pan Zhengjun; Arnone Maria I; Rowen Lee; Cameron R Andrew; McClay David R; Hood Leroy; Bolouri Hamid
A provisional regulatory gene network for specification of endomesoderm in the sea urchin embryo.
Developmental biology 2002;246(1):162-90.
2002: Yuh Chiou-Hwa; Brown C Titus; Livi Carolina B; Rowen Lee; Clarke Peter J C; Davidson Eric H
Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin.
Developmental biology 2002;246(1):148-61.
2002: Ransick Andrew; Rast Jonathan P; Minokawa Takuya; Calestani Cristina; Davidson Eric H
New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization.
Developmental biology 2002;246(1):132-47.
2002: Brown C Titus; Rust Alistair G; Clarke Peter J C; Pan Zhengjun; Schilstra Maria J; De Buysscher Tristan; Griffin Gareth; Wold Barbara J; Cameron R Andrew; Davidson Eric H; Bolouri Hamid
New computational approaches for analysis of cis-regulatory networks.
Developmental biology 2002;246(1):86-102.
2002: Bolouri Hamid; Davidson Eric H
Modeling DNA sequence-based cis-regulatory gene networks.
Developmental biology 2002;246(1):2-13.
2002: Davidson Eric H; Rast Jonathan P; Oliveri Paola; Ransick Andrew; Calestani Cristina; Yuh Chiou-Hwa; Minokawa Takuya; Amore Gabriele; Hinman Veronica; Arenas-Mena Cesar; Otim Ochan; Brown C Titus; Livi Carolina B; Lee Pei Yun; Revilla Roger; Rust Alistair G; Pan Zheng jun; Schilstra Maria J; Clarke Peter J C; Arnone Maria I; Rowen Lee; Cameron R Andrew; McClay David R; Hood Leroy; Bolouri Hamid
A genomic regulatory network for development.
Science (New York, N.Y.) 2002;295(5560):1669-78.
2001: Martin E L; Consales C; Davidson E H; Arnone M I
Evidence for a mesodermal embryonic regulator of the sea urchin CyIIa gene.
Developmental biology 2001;236(1):46-63.
2001: Zhu X; Mahairas G; Illies M; Cameron R A; Davidson E H; Ettensohn C A
A large-scale analysis of mRNAs expressed by primary mesenchyme cells of the sea urchin embryo.
Development (Cambridge, England) 2001;128(13):2615-27.
2001: Yuh C H; Li X; Davidson E H; Klein W H
Correct Expression of spec2a in the sea urchin embryo requires both Otx and other cis-regulatory elements.
Developmental biology 2001;232(2):424-38.
2001: Yuh C H; Bolouri H; Davidson E H
Cis-regulatory logic in the endo16 gene: switching from a specification to a differentiation mode of control.
Development (Cambridge, England) 2001;128(5):617-29.
2001: Coffman J A; Davidson E H
Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry.
Developmental biology 2001;230(1):18-28.
2000: Rast J P; Amore G; Calestani C; Livi C B; Ransick A; Davidson E H
Recovery of developmentally defined gene sets from high-density cDNA macroarrays.
Developmental biology 2000;228(2):270-86.
2000: Arenas-Mena C; Cameron A R; Davidson E H
Spatial expression of Hox cluster genes in the ontogeny of a sea urchin.
Development (Cambridge, England) 2000;127(21):4631-43.
2000: Cameron R A; Mahairas G; Rast J P; Martinez P; Biondi T R; Swartzell S; Wallace J C; Poustka A J; Livingston B T; Wray G A; Ettensohn C A; Lehrach H; Britten R J; Davidson E H; Hood L
A sea urchin genome project: sequence scan, virtual map, and additional resources.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(17):9514-8.
2000: Peterson K J; Irvine S Q; Cameron R A; Davidson E H
Quantitative assessment of Hox complex expression in the indirect development of the polychaete annelid Chaetopterus sp.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(9):4487-92.
2000: Chen J Y; Oliveri P; Li C W; Zhou G Q; Gao F; Hagadorn J W; Peterson K J; Davidson E H
Precambrian animal diversity: putative phosphatized embryos from the Doushantuo Formation of China.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(9):4457-62.
2000: Peterson K J; Davidson E H
Regulatory evolution and the origin of the bilaterians.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(9):4430-3.
2000: Peterson K J; Arenas-Mena C; Davidson E H
The A/P axis in echinoderm ontogeny and evolution: evidence from fossils and molecules.
Evolution & development 2000;2(2):93-101.
2000: Peterson K J; Cameron R A; Davidson E H
Bilaterian origins: significance of new experimental observations.
Developmental biology 2000;219(1):1-17.
2000: Rast J P; Pancer Z; Davidson E H
New approaches towards an understanding of deuterostome immunity.
Current topics in microbiology and immunology 2000;248():3-16.
1999: Davidson E H
A view from the genome: spatial control of transcription in sea urchin development.
Current opinion in genetics & development 1999;9(5):530-41.
1999: Lee Y H; Huang G M; Cameron R A; Graham G; Davidson E H; Hood L; Britten R J
EST analysis of gene expression in early cleavage-stage sea urchin embryos.
Development (Cambridge, England) 1999;126(17):3857-67.
1999: Davidson E H; Ruvkun G
Themes from a NASA workshop on gene regulatory processes in development and evolution.
The Journal of experimental zoology 1999;285(2):104-15.
1999: Pancer Z; Rast J P; Davidson E H
Origins of immunity: transcription factors and homologues of effector genes of the vertebrate immune system expressed in sea urchin coelomocytes.
Immunogenetics 1999;49(9):773-86.
1999: Lee Y H; Britten R J; Davidson E H
SM37, a skeletogenic gene of the sea urchin embryo linked to the SM50 gene.
Development, growth & differentiation 1999;41(3):303-12.
1999: Cameron R A; Leahy P S; Britten R J; Davidson E H
Microsatellite loci in wild-type and inbred Strongylocentrotus purpuratus.
Developmental biology 1999;208(2):255-64.
1999: Peterson K J; Harada Y; Cameron R A; Davidson E H
Expression pattern of Brachyury and Not in the sea urchin: comparative implications for the origins of mesoderm in the basal deuterostomes.
Developmental biology 1999;207(2):419-31.
1999: Martinez P; Rast J P; Arenas-Mena C; Davidson E H
Organization of an echinoderm Hox gene cluster.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(4):1469-74.
1999: Peterson K J; Cameron R A; Tagawa K; Satoh N; Davidson E H
A comparative molecular approach to mesodermal patterning in basal deuterostomes: the expression pattern of Brachyury in the enteropneust hemichordate Ptychodera flava.
Development (Cambridge, England) 1999;126(1):85-95.
1998: Bogarad L D; Arnone M I; Chang C; Davidson E H
Interference with gene regulation in living sea urchin embryos: transcription factor knock out (TKO), a genetically controlled vector for blockade of specific transcription factors.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(25):14827-32.
1998: Arenas-Mena C; Martinez P; Cameron R A; Davidson E H
Expression of the Hox gene complex in the indirect development of a sea urchin.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(22):13062-7.
1998: Davidson E H; Cameron R A; Ransick A
Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms.
Development (Cambridge, England) 1998;125(17):3269-90.
1998: Arnone M I; Martin E L; Davidson E H
Cis-regulation downstream of cell type specification: a single compact element controls the complex expression of the CyIIa gene in sea urchin embryos.
Development (Cambridge, England) 1998;125(8):1381-95.
1998: Ransick A; Davidson E H
Late specification of Veg1 lineages to endodermal fate in the sea urchin embryo.
Developmental biology 1998;195(1):38-48.
1998: Yuh C H; Bolouri H; Davidson E H
Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene.
Science (New York, N.Y.) 1998;279(5358):1896-902.
1997: Coffman J A; Kirchhamer C V; Harrington M G; Davidson E H
SpMyb functions as an intramodular repressor to regulate spatial expression of CyIIIa in sea urchin embryos.
Development (Cambridge, England) 1997;124(23):4717-27.
1997: Arnone M I; Bogarad L D; Collazo A; Kirchhamer C V; Cameron R A; Rast J P; Gregorians A; Davidson E H
Green Fluorescent Protein in the sea urchin: new experimental approaches to transcriptional regulatory analysis in embryos and larvae.
Development (Cambridge, England) 1997;124(22):4649-59.
1997: Harrington M G; Coffman J A; Davidson E H
Covalent variation is a general property of transcription factors in the sea urchin embryo.
Molecular marine biology and biotechnology 1997;6(3):153-62.
1997: Cameron R A; Davidson E H
LiCl perturbs ectodermal veg1 lineage allocations in Strongylocentrotus purpuratus embryos.
Developmental biology 1997;187(2):236-9.
1997: Peterson K J; Cameron R A; Davidson E H
Set-aside cells in maximal indirect development: evolutionary and developmental significance.
BioEssays : news and reviews in molecular, cellular and developmental biology 1997;19(7):623-31.
1997: Calzone F J; Grainger J; Coffman J A; Davidson E H
Extensive maternal representation of DNA-binding proteins that interact with regulatory target sites of the Strongylocentrotus purpuratus CyIIIa gene.
Molecular marine biology and biotechnology 1997;6(2):79-83.
1997: Arnone M I; Davidson E H
The hardwiring of development: organization and function of genomic regulatory systems.
Development (Cambridge, England) 1997;124(10):1851-64.
1997: Martinez P; Lee J C; Davidson E H
Complete sequence of SpHox8 and its linkage in the single Hox gene cluster of Strongylocentrotus purpuratus.
Journal of molecular evolution 1997;44(4):371-7.
1997: Martinez P; Davidson E H
SpHmx, a sea urchin homeobox gene expressed in embryonic pigment cells.
Developmental biology 1997;181(2):213-22.
1996: Yuh C H; Moore J G; Davidson E H
Quantitative functional interrelations within the cis-regulatory system of the S. purpuratus Endo16 gene.
Development (Cambridge, England) 1996;122(12):4045-56.
1996: Cameron R A; Walkup T S; Rood K; Moore J G; Davidson E H
Specific in vitro interaction between recombinant Strongylocentrotus purpuratus bindin and a recombinant 45A fragment of the putative bindin receptor.
Developmental biology 1996;180(1):348-52.
1996: Kirchhamer C V; Bogarad L D; Davidson E H
Developmental expression of synthetic cis-regulatory systems composed of spatial control elements from two different genes.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(24):13849-54.
1996: Cameron R A; Leahy P S; Davidson E H
Twins raised from separated blastomeres develop into sexually mature Strongylocentrotus purpuratus.
Developmental biology 1996;178(2):514-9.
1996: Kirchhamer C V; Yuh C H; Davidson E H
Modular cis-regulatory organization of developmentally expressed genes: two genes transcribed territorially in the sea urchin embryo, and additional examples.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(18):9322-8.
1996: Ransick A; Cameron R A; Davidson E H
Postembryonic segregation of the germ line in sea urchins in relation to indirect development.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(13):6759-63.
1996: Yuh C H; Davidson E H
Modular cis-regulatory organization of Endo16, a gut-specific gene of the sea urchin embryo.
Development (Cambridge, England) 1996;122(4):1069-82.
1996: Coffman J A; Kirchhamer C V; Harrington M G; Davidson E H
SpRunt-1, a new member of the runt domain family of transcription factors, is a positive regulator of the aboral ectoderm-specific CyIIIA gene in sea urchin embryos.
Developmental biology 1996;174(1):43-54.
1996: Kirchhamer C V; Davidson E H
Spatial and temporal information processing in the sea urchin embryo: modular and intramodular organization of the CyIIIa gene cis-regulatory system.
Development (Cambridge, England) 1996;122(1):333-48.
1996: Xian J; Harrington M G; Davidson E H
DNA-protein binding assays from a single sea urchin egg: a high-sensitivity capillary electrophoresis method.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(1):86-90.
1996: Smith L C; Chang L; Britten R J; Davidson E H
Sea urchin genes expressed in activated coelomocytes are identified by expressed sequence tags. Complement homologues and other putative immune response genes suggest immune system homology within the deuterostomes.
Journal of immunology (Baltimore, Md. : 1950) 1996;156(2):593-602.
1995: Davidson E H; Peterson K J; Cameron R A
Origin of bilaterian body plans: evolution of developmental regulatory mechanisms.
Science (New York, N.Y.) 1995;270(5240):1319-25.
1995: Ransick A; Davidson E H
Micromeres are required for normal vegetal plate specification in sea urchin embryos.
Development (Cambridge, England) 1995;121(10):3215-22.
1995: Makabe K W; Kirchhamer C V; Britten R J; Davidson E H
Cis-regulatory control of the SM50 gene, an early marker of skeletogenic lineage specification in the sea urchin embryo.
Development (Cambridge, England) 1995;121(7):1957-70.
1995: Zeller R W; Britten R J; Davidson E H
Developmental utilization of SpP3A1 and SpP3A2: two proteins which recognize the same DNA target site in several sea urchin gene regulatory regions.
Developmental biology 1995;170(1):75-82.
1995: Zeller R W; Coffman J A; Harrington M G; Britten R J; Davidson E H
SpGCF1, a sea urchin embryo DNA-binding protein, exists as five nested variants encoded by a single mRNA.
Developmental biology 1995;169(2):713-27.
1995: Wang D G; Britten R J; Davidson E H
Maternal and embryonic provenance of a sea urchin embryo transcription factor, SpZ12-1.
Molecular marine biology and biotechnology 1995;4(2):148-53.
1995: Smith L C; Britten R J; Davidson E H
Lipopolysaccharide activates the sea urchin immune system.
Developmental and comparative immunology 1995;19(3):217-24.
1995: Wang D G; Kirchhamer C V; Britten R J; Davidson E H
SpZ12-1, a negative regulator required for spatial control of the territory-specific CyIIIa gene in the sea urchin embryo.
Development (Cambridge, England) 1995;121(4):1111-22.
1995: Zeller R W; Griffith J D; Moore J G; Kirchhamer C V; Britten R J; Davidson E H
A multimerizing transcription factor of sea urchin embryos capable of looping DNA.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(7):2989-93.
1995: Britten R J; McCormack T J; Mears T L; Davidson E H
Gypsy/Ty3-class retrotransposons integrated in the DNA of herring, tunicate, and echinoderms.
Journal of molecular evolution 1995;40(1):13-24.
1994: Davidson E H
Molecular biology of embryonic development: how far have we come in the last ten years?
BioEssays : news and reviews in molecular, cellular and developmental biology 1994;16(9):603-15.
1994: Smith L C; Harrington M G; Britten R J; Davidson E H
The sea urchin profilin gene is specifically expressed in mesenchyme cells during gastrulation.
Developmental biology 1994;164(2):463-74.
1994: Yuh C H; Ransick A; Martinez P; Britten R J; Davidson E H
Complexity and organization of DNA-protein interactions in the 5'-regulatory region of an endoderm-specific marker gene in the sea urchin embryo.
Mechanisms of development 1994;47(2):165-86.
1994: Anderson R; Britten R J; Davidson E H
Repeated sequence target sites for maternal DNA-binding proteins in genes activated in early sea urchin development.
Developmental biology 1994;163(1):11-8.
1994: Smith L C; Davidson E H
The echinoderm immune system. Characters shared with vertebrate immune systems and characters arising later in deuterostome phylogeny.
Annals of the New York Academy of Sciences 1994;712():213-26.
1994: Leahy P S; Cameron R A; Knox M A; Britten R J; Davidson E H
Development of sibling inbred sea urchins: normal embryogenesis, but frequent postembryonic malformation, arrest and lethality.
Mechanisms of development 1994;45(3):255-68.
1994: Cameron R A; Smith L C; Britten R J; Davidson E H
Ligand-dependent stimulation of introduced mammalian brain receptors alters spicule symmetry and other morphogenetic events in sea urchin embryos.
Mechanisms of development 1994;45(1):31-47.
1993: Cameron R A; Britten R J; Davidson E H
The embryonic ciliated band of the sea urchin, Strongylocentrotus purpuratus derives from both oral and aboral ectoderm.
Developmental biology 1993;160(2):369-76.
1993: Char B R; Bell J R; Dovala J; Coffman J A; Harrington M G; Becerra J C; Davidson E H; Calzone F J; Maxson R
SpOct, a gene encoding the major octamer-binding protein in sea urchin embryos: expression profile, evolutionary relationships, and DNA binding of expressed protein.
Developmental biology 1993;158(2):350-63.
1993: Ransick A; Ernst S; Britten R J; Davidson E H
Whole mount in situ hybridization shows Endo 16 to be a marker for the vegetal plate territory in sea urchin embryos.
Mechanisms of development 1993;42(3):117-24.
1993: Davidson E H
Later embryogenesis: regulatory circuitry in morphogenetic fields.
Development (Cambridge, England) 1993;118(3):665-90.
1993: Minor J E; Britten R J; Davidson E H
Species-specific inhibition of fertilization by a peptide derived from the sperm protein bindin.
Molecular biology of the cell 1993;4(4):375-87.
1993: Ransick A; Davidson E H
A complete second gut induced by transplanted micromeres in the sea urchin embryo.
Science (New York, N.Y.) 1993;259(5098):1134-8.
1992: Smith L C; Davidson E H
The echinoid immune system and the phylogenetic occurrence of immune mechanisms in deuterostomes.
Immunology today 1992;13(9):356-62.
1992: Harrington M G; Coffman J A; Calzone F J; Hood L E; Britten R J; Davidson E H
Complexity of sea urchin embryo nuclear proteins that contain basic domains.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(14):6252-6.
1992: Zeller R W; Cameron R A; Franks R R; Britten R J; Davidson E H
Territorial expression of three different trans-genes in early sea urchin embryos detected by a whole-mount fluorescence procedure.
Developmental biology 1992;151(2):382-90.
1992: Coffman J A; Davidson E H
Expression of spatially regulated genes in the sea urchin embryo.
Current opinion in genetics & development 1992;2(2):260-8.
1992: Smith L C; Britten R J; Davidson E H
SpCoel1: a sea urchin profilin gene expressed specifically in coelomocytes in response to injury.
Molecular biology of the cell 1992;3(4):403-14.
1992: Coffman J A; Moore J G; Calzone F J; Britten R J; Hood L E; Davidson E H
Automated sequential affinity chromatography of sea urchin embryo DNA binding proteins.
Molecular marine biology and biotechnology 1992;1(2):136-46.
1992: Lee J J; Calzone F J; Davidson E H
Modulation of sea urchin actin mRNA prevalence during embryogenesis: nuclear synthesis and decay rate measurements of transcripts from five different genes.
Developmental biology 1992;149(2):415-31.
1991: Cameron R A; Fraser S E; Britten R J; Davidson E H
Macromere cell fates during sea urchin development.
Development (Cambridge, England) 1991;113(4):1085-91.
1991: Minor J E; Fromson D R; Britten R J; Davidson E H
Comparison of the bindin proteins of Strongylocentrotus franciscanus, S. purpuratus, and Lytechinus variegatus: sequences involved in the species specificity of fertilization.
Molecular biology and evolution 1991;8(6):781-95.
1991: Livant D L; Hough-Evans B R; Moore J G; Britten R J; Davidson E H
Differential stability of expression of similarly specified endogenous and exogenous genes in the sea urchin embryo.
Development (Cambridge, England) 1991;113(2):385-98.
1991: Springer M S; Davidson E H; Britten R J
Retroviral-like element in a marine invertebrate.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(19):8401-4.
1991: Davidson E H
Spatial mechanisms of gene regulation in metazoan embryos.
Development (Cambridge, England) 1991;113(1):1-26.
1991: Cameron R A; Davidson E H
Cell type specification during sea urchin development.
Trends in genetics : TIG 1991;7(7):212-8.
1991: Höög C; Calzone F J; Cutting A E; Britten R J; Davidson E H
Gene regulatory factors of the sea urchin embryo. II. Two dissimilar proteins, P3A1 and P3A2, bind to the same target sites that are required for early territorial gene expression.
Development (Cambridge, England) 1991;112(1):351-64.
1991: Calzone F J; Höög C; Teplow D B; Cutting A E; Zeller R W; Britten R J; Davidson E H
Gene regulatory factors of the sea urchin embryo. I. Purification by affinity chromatography and cloning of P3A2, a novel DNA-binding protein.
Development (Cambridge, England) 1991;112(1):335-50.
1990: Thiebaud P; Goodstein M; Calzone F J; Thézé N; Britten R J; Davidson E H
Intersecting batteries of differentially expressed genes in the early sea urchin embryo.
Genes & development 1990;4(11):1999-2010.
1990: Cameron R A; Minor J E; Nishioka D; Britten R J; Davidson E H
Locale and level of bindin mRNA in maturing testis of the sea urchin, Strongylocentrotus purpuratus.
Developmental biology 1990;142(1):44-9.
1990: Cutting A E; Höög C; Calzone F J; Britten R J; Davidson E H
Rare maternal mRNAs code for regulatory proteins that control lineage-specific gene expression in the sea urchin embryo.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(20):7953-7.
1990: Hough-Evans B R; Franks R R; Zeller R W; Britten R J; Davidson E H
Negative spatial regulation of the lineage specific CyIIIa actin gene in the sea urchin embryo.
Development (Cambridge, England) 1990;110(1):41-50.
1990: Franks R R; Anderson R; Moore J G; Hough-Evans B R; Britten R J; Davidson E H
Competitive titration in living sea urchin embryos of regulatory factors required for expression of the CyIIIa actin gene.
Development (Cambridge, England) 1990;110(1):31-40.
1990: Davidson E H
How embryos work: a comparative view of diverse modes of cell fate specification.
Development (Cambridge, England) 1990;108(3):365-89.
1990: Thézé N; Calzone F J; Thiebaud P; Hill R L; Britten R J; Davidson E H
Sequences of the CyIIIa actin gene regulatory domain bound specifically by sea urchin embryo nuclear proteins.
Molecular reproduction and development 1990;25(2):110-22.
1990: Cameron R A; Fraser S E; Britten R J; Davidson E H
Segregation of oral from aboral ectoderm precursors is completed at fifth cleavage in the embryogenesis of Strongylocentrotus purpuratus.
Developmental biology 1990;137(1):77-85.
1989: Cameron R A; Fraser S E; Britten R J; Davidson E H
The oral-aboral axis of a sea urchin embryo is specified by first cleavage.
Development (Cambridge, England) 1989;106(4):641-7.
1989: Davidson E H
Lineage-specific gene expression and the regulative capacities of the sea urchin embryo: a proposed mechanism.
Development (Cambridge, England) 1989;105(3):421-45.
1989: Franks R R; Britten R J; Davidson E H
In vivo competition identifies positive cis-regulatory elements required for lineage-specific gene expression in the sea urchin embryo.
Ciba Foundation symposium 1989;144():156-66; discussion 166-71, 208-11.
1989: Cameron R A; Britten R J; Davidson E H
Expression of two actin genes during larval development in the sea urchin Strongylocentrotus purpuratus.
Molecular reproduction and development 1989;1(3):149-55.
1988: Sucov H M; Hough-Evans B R; Franks R R; Britten R J; Davidson E H
A regulatory domain that directs lineage-specific expression of a skeletal matrix protein gene in the sea urchin embryo.
Genes & development 1988;2(10):1238-50.
1988: Livant D L; Cutting A E; Britten R J; Davidson E H
An in vivo titration of regulatory factors required for expression of a fusion gene in transgenic sea urchin embryos.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(20):7607-11.
1988: Calzone F J; Thézé N; Thiebaud P; Hill R L; Britten R J; Davidson E H
Developmental appearance of factors that bind specifically to cis-regulatory sequences of a gene expressed in the sea urchin embryo.
Genes & development 1988;2(9):1074-88.
1988: Hough-Evans B R; Britten R J; Davidson E H
Mosaic incorporation and regulated expression of an exogenous gene in the sea urchin embryo.
Developmental biology 1988;129(1):198-208.
1988: Britten R J; Baron W F; Stout D B; Davidson E H
Sources and evolution of human Alu repeated sequences.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(13):4770-4.
1988: Calzone F J; Lee J J; Le N; Britten R J; Davidson E H
A long, nontranslatable poly(A) RNA stored in the egg of the sea urchin Strongylocentrotus purpuratus.
Genes & development 1988;2(3):305-18.
1988: Franks R R; Hough-Evans B R; Britten R J; Davidson E H
Direct introduction of cloned DNA into the sea urchin zygote nucleus, and fate of injected DNA.
Development (Cambridge, England) 1988;102(2):287-99.
1988: Franks R R; Hough-Evans B R; Britten R J; Davidson E H
Spatially deranged though temporally correct expression of Strongylocentrotus purpuratus actin gene fusion in transgenic embryos of a different sea urchin family.
Genes & development 1988;2(1):1-12.
1987: Katula K S; Hough-Evans B R; Britten R J; Davidson E H
Ontogenic expression of a CyI actin fusion gene injected into sea urchin eggs.
Development (Cambridge, England) 1987;101(3):437-47.
1987: Hough-Evans B R; Franks R R; Cameron R A; Britten R J; Davidson E H
Correct cell-type-specific expression of a fusion gene injected into sea urchin eggs.
Developmental biology 1987;121(2):576-9.
1987: Cameron R A; Hough-Evans B R; Britten R J; Davidson E H
Lineage and fate of each blastomere of the eight-cell sea urchin embryo.
Genes & development 1987;1(1):75-85.
1985: Flytzanis C N; McMahon A P; Hough-Evans B R; Katula K S; Britten R J; Davidson E H
Persistence and integration of cloned DNA in postembryonic sea urchins.
Developmental biology 1985;108(2):431-42.
1985: McMahon A P; Flytzanis C N; Hough-Evans B R; Katula K S; Britten R J; Davidson E H
Introduction of cloned DNA into sea urchin egg cytoplasm: replication and persistence during embryogenesis.
Developmental biology 1985;108(2):420-30.
1981: Scheller R H; McAllister L B; Crain W R; Durica D S; Posakony J W; Thomas T L; Britten R J; Davidson E H
Organization and expression of multiple actin genes in the sea urchin.
Molecular and cellular biology 1981;1(7):609-28.
1981: Scheller R H; Anderson D M; Posakony J W; McAllister L B; Britten R J; Davidson E H
Repetitive sequences of the sea urchin genome. II. Subfamily structure and evolutionary conservation.
Journal of molecular biology 1981;149(1):15-39.
1981: Anderson D M; Scheller R H; Posakony J W; McAllister L B; Trabert S G; Beall C; Britten R J; Davidson E H
Repetitive sequences of the sea urchin genome. Distribution of members of specific repetitive families.
Journal of molecular biology 1981;145(1):5-28.

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