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Ronald Davis

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TOP 3
Sam Emaminejad; Mehdi Javanmard; Robert W Dutton; Ronald W Davis
Microfluidic diagnostic tool for the developing world: contactless impedance flow cytometry.
Kee-Hyun Paik; J Provine; Vincent Tabard-Cossa; Matthew J Waugh; Robert W Dutton; Roger T Howe; David E Huber; Yang Liu; Ronald W Davis
Control of DNA capture by nanofluidic transistors.
Mehdi Javanmard; Pål Nyrén; Farbod Babrzadeh; Ronald W Davis
Improvement in cell capture throughput using parallel bioactivated microfluidic channels.

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All Publications

2012: Sam Emaminejad; Mehdi Javanmard; Robert W Dutton; Ronald W Davis
Microfluidic diagnostic tool for the developing world: contactless impedance flow cytometry.
Lab on a chip 2012;12(21):4499-507.
2012: Kee-Hyun Paik; J Provine; Vincent Tabard-Cossa; Matthew J Waugh; Robert W Dutton; Roger T Howe; David E Huber; Yang Liu; Ronald W Davis
Control of DNA capture by nanofluidic transistors.
ACS nano 2012;6(8):6767-75.
2012: Mehdi Javanmard; Pål Nyrén; Farbod Babrzadeh; Ronald W Davis
Improvement in cell capture throughput using parallel bioactivated microfluidic channels.
Biomedical microdevices 2012;14(4):625-9.
2012: Ulrich Schlecht; Ronald W Davis; Molly Miranda; Sundari Suresh; Robert P St Onge
Multiplex assay for condition-dependent changes in protein-protein interactions.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(23):9213-8.
2012: Weihong Xu; Ronald W Davis; Hong Gao; Michael N Mindrinos; Junhee Seok; Julie Wilhelmy; Wenzhong Xiao
Coding SNPs as intrinsic markers for sample tracking in large-scale transcriptome studies.
BioTechniques 2012;52(6):386-8.
2012: Farbod Babrzadeh; Luiz C Basso; Ronald W Davis; Henrique V de Amorim; Antonio J de Oliveira; Baback Gharizadeh; Roxana Jalili; Pål Nyren; Sarah Pierce; Avi Robinson-Mosher; Mostafa Ronaghi; Robert W Shafer; Shadi Shokralla; Chunlin Wang; Boris U Stambuk
Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1.
Molecular genetics and genomics : MGG 2012;287(6):485-94.
2012: Chunlin Wang; Julie Wilhelmy; Lilit Stepanyan; Laura F Su; Farbod Babrzadeh; Mark M Davis; Ronald W Davis; Marcelo A Fernandez-Viña; Sujatha Krishnakumar; Douglas Levinson; Michael Mindrinos
High-throughput, high-fidelity HLA genotyping with deep sequencing.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(22):8676-81.
2012: Joseph Cuschieri; Ronald W Davis; Philip A Efron; Laura Hennessy; Jeffrey L Johnson; Ronald V Maier; Philip H Mason; Grace P McDonald-Smith; Michael N Mindrinos; Joseph P Minei; Lyle L Moldawer; Ernest E Moore; Avery B Nathens; David A Schoenfeld; Jason Sperry; Ronald G Tompkins; H Shaw Warren; Michael A West; Wenzhong Xiao; Paul E Bankey; Timothy R Billiar; J Perren Cobb; Alex G Cuenca
Benchmarking outcomes in the critically injured trauma patient and the effect of implementing standard operating procedures.
Annals of surgery 2012;255(5):993-9.
2012: Junhee Seok; Ronald W Davis; Hong Gao; Weihong Xu; wenzhong xiao
JETTA: junction and exon toolkits for transcriptome analysis.
Bioinformatics (Oxford, England) 2012;28(9):1274-5.
2012: Richard W Hyman; Hui Jiang; Curtis Palm; Kim Chi Vo; Zara Zelenko; Denise Bernstein; Ronald W Davis; Marilyn Fukushima; Christopher N Herndon; Linda C Giudice
The dynamics of the vaginal microbiome during infertility therapy with in vitro fertilization-embryo transfer.
Journal of assisted reproduction and genetics 2012;29(2):105-15.
2012: Ulrich Schlecht; Robert P St Onge; Thomas Walther; Jean-Marie François; Ronald W Davis
Cationic amphiphilic drugs are potent inhibitors of yeast sporulation.
PloS one 2012;7(8):e42853.
2012: Ashley A Powell; Stephen R Quake; Anupama Reddy; Shruti Sheth; Frank E Stockdale; AmirAli H Talasaz; Melinda L Telli; Haiyu Zhang; Ranjana H Advani; Gyan Bhanot; Robert W Carlson; Marc A Coram; Shanaz H Dairkee; Ronald W Davis; Glenn Deng; James M Ford; Allison W Kurian; Michael N Mindrinos; Joseph A Mollick; R Fabian Pease; Stefanie S Jeffrey
Single cell profiling of circulating tumor cells: transcriptional heterogeneity and diversity from breast cancer cell lines.
PloS one 2012;7(5):e33788.
2012: Michael A Jensen; Lauren Jauregui; Ronald W Davis
A rapid, cost-effective method of assembly and purification of synthetic DNA probes >100 bp.
PloS one 2012;7(4):e34373.
2012: Richard W Hyman; Hyunsung Kim; Molly Miranda; Nader Pourmand; Robert P St Onge; John S Tamaresis; Ana Maria Aparicio; Marilyn Fukushima; Linda C Giudice; Ronald W Davis
Molecular probe technology detects bacteria without culture.
BMC microbiology 2012;12():29.
2012: Junhee Seok; Ronald W Davis; Hui Jiang; Weihong Xu; wenzhong xiao
Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
PloS one 2012;7(2):e31440.
2011: Adam M Deutschbauer; Michelle Nguyen; Morgan N Price; Wenjun Shao; Raquel Tamse; Kelly M Wetmore; Zhuchen Xu; Jason K Baumohl; Ronald W Davis; Adam P Arkin
Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions.
PLoS genetics 2011;7(11):e1002385.
2011: Peidong Shen; Wenyi Wang; Sujatha Krishnakumar; Curtis Palm; Aung-Kyaw Chi; Gregory M Enns; Ronald W Davis; Terence P Speed; Michael N Mindrinos; Curt Scharfe
High-quality DNA sequence capture of 524 disease candidate genes.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(16):6549-54.
2011: Weihong Xu; Junhee Seok; Michael N Mindrinos; Anthony C Schweitzer; Hui Jiang; Julie Wilhelmy; Tyson A Clark; Karen Kapur; Yi Xing; Malek Faham; John D Storey; Lyle L Moldawer; Ronald V Maier; Ronald G Tompkins; Wing Hung Wong; Ronald W Davis; wenzhong xiao
Human transcriptome array for high-throughput clinical studies.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(9):3707-12.
2011: Michael Proctor; Malene L Urbanus; Ronald W Davis; Eula L Fung; Daniel F Jaramillo; Corey Nislow; Guri Giaever
The automated cell: compound and environment screening system (ACCESS) for chemogenomic screening.
Methods in molecular biology (Clifton, N.J.) 2011;759():239-69.
2011: Wenyi Wang; Peidong Shen; Sreedevi Thiyagarajan; Shengrong Lin; Curtis Palm; Rita Horvath; Thomas Klopstock; David Cutler; Lynn Pique; Iris Schrijver; Ronald W Davis; Michael Mindrinos; Terence P Speed; Curt Scharfe
Identification of rare DNA variants in mitochondrial disorders with improved array-based sequencing.
Nucleic acids research 2011;39(1):44-58.
2010: Michael A Jensen; Keith M Anderson; Ronald W Davis
Gas-phase cleavage and dephosphorylation of universal linker-bound oligodeoxynucleotides.
Nucleosides, nucleotides & nucleic acids 2010;29(11):867-78.
2010: Wei-Jun Qian; Brianne O Petritis; Amit Kaushal; Celeste C Finnerty; Marc G Jeschke; Matthew E Monroe; Ronald J Moore; Athena A Schepmoes; wenzhong xiao; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; David N Herndon; David G Camp; Richard D Smith
Plasma proteome response to severe burn injury revealed by 18O-labeled "universal" reference-based quantitative proteomics.
Journal of proteome research 2010;9(9):4779-89.
2010: Kenneth T Kotz; wenzhong xiao; Carol Miller-Graziano; Wei-Jun Qian; Aman Russom; Elizabeth A Warner; Lyle L Moldawer; Asit De; Paul E Bankey; Brianne O Petritis; David G Camp; Alan E Rosenbach; Jeremy Goverman; Shawn P Fagan; Bernard H Brownstein; daniel irimia; Weihong Xu; Julie Wilhelmy; Michael N Mindrinos; Richard D Smith; Ronald W Davis; Ronald G Tompkins; Mehmet Toner
Clinical microfluidics for neutrophil genomics and proteomics.
Nature medicine 2010;16(9):1042-7.
2010: Julia Oh; Eula Fung; Morgan N Price; Paramvir S Dehal; Ronald W Davis; Guri Giaever; Corey Nislow; Adam P Arkin; Adam Deutschbauer
A universal TagModule collection for parallel genetic analysis of microorganisms.
Nucleic acids research 2010;38(14):e146.
2010: Richard W Hyman; Robert P St Onge; Edward A Allen; Molly Miranda; Ana Maria Aparicio; Marilyn Fukushima; Ronald W Davis
Multiplex identification of microbes.
Applied and environmental microbiology 2010;76(12):3904-10.
2010: Andy C Mak; Sebastian J Osterfeld; Heng Yu; Shan X Wang; Ronald W Davis; Olufisayo A Jejelowo; Nader Pourmand
Sensitive giant magnetoresistive-based immunoassay for multiplex mycotoxin detection.
Biosensors & bioelectronics 2010;25(7):1635-9.
2010: Chunlin Wang; Catherine M Sanders; Qunying Yang; Harry W Schroeder; Elijah Wang; Farbod Babrzadeh; Baback Gharizadeh; Richard Myers; James R Hudson; Ronald W Davis; Jian Han
High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(4):1518-23.
2010: Shengrong Lin; Wenyi Wang; Curtis Palm; Ronald W Davis; Kara Juneau
A molecular inversion probe assay for detecting alternative splicing.
BMC genomics 2010;11():712.
2010: Yuping Zhang; Robert Tibshirani; Ronald W Davis
Predicting patient survival from longitudinal gene expression.
Statistical applications in genetics and molecular biology 2010;9():Article41.
2010: Julia Oh; Eula Fung; Ulrich Schlecht; Ronald W Davis; Guri Giaever; Robert P St Onge; Adam Deutschbauer; Corey Nislow
Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection.
PLoS pathogens 2010;6(10):e1001140.
2010: Eveline Farias-Hesson; Jonathan Erikson; Alexander Atkins; Peidong Shen; Ronald W Davis; Curt Scharfe; Nader Pourmand
Semi-automated library preparation for high-throughput DNA sequencing platforms.
Journal of biomedicine & biotechnology 2010;2010():617469.
2010: Michael A Jensen; Marilyn Fukushima; Ronald W Davis
DMSO and betaine greatly improve amplification of GC-rich constructs in de novo synthesis.
PloS one 2010;5(6):e11024.
2010: Maureen E Hillenmeyer; Elke Ericson; Ronald W Davis; Corey Nislow; Daphne Koller; Guri Giaever
Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action.
Genome biology 2010;11(3):R30.
2009: H E M Liwanag; Terrie M Williams; Daniel P Costa; Shane B Kanatous; Ronald W Davis; I L Boyd
The effects of water temperature on the energetic costs of juvenile and adult California sea lions (Zalophus californianus): the importance of skeletal muscle thermogenesis for thermal balance.
The Journal of experimental biology 2009;212(Pt 24):3977-84.
2009: Kara Juneau; Corey Nislow; Ronald W Davis
Alternative splicing of PTC7 in Saccharomyces cerevisiae determines protein localization.
Genetics 2009;183(1):185-94.
2009: Taavi K Neklesa; Ronald W Davis
A genome-wide screen for regulators of TORC1 in response to amino acid starvation reveals a conserved Npr2/3 complex.
PLoS genetics 2009;5(6):e1000515.
2009: Mehdi Javanmard; AmirAli H Talasaz; Mohsen Nemat-Gorgani; Fabian Pease; Mostafa Ronaghi; Ronald W Davis
Electrical detection of protein biomarkers using bioactivated microfluidic channels.
Lab on a chip 2009;9(10):1429-34.
2009: Curt Scharfe; Henry Horng-Shing Lu; Jutta K Neuenburg; Edward A Allen; Guan-Cheng Li; Thomas Klopstock; Tina M Cowan; Gregory M Enns; Ronald W Davis
Mapping gene associations in human mitochondria using clinical disease phenotypes.
PLoS computational biology 2009;5(4):e1000374.
2009: Senkei Umehara; Miloslav Karhanek; Ronald W Davis; Nader Pourmand
Label-free biosensing with functionalized nanopipette probes.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(12):4611-6.
2009: AmirAli H Talasaz; Ashley A Powell; David E Huber; James G Berbee; Kyung-Ho Roh; Wong Yu; wenzhong xiao; Mark M Davis; R Fabian Pease; Michael N Mindrinos; Stefanie S Jeffrey; Ronald W Davis
Isolating highly enriched populations of circulating epithelial cells and other rare cells from blood using a magnetic sweeper device.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(10):3970-5.
2009: Balaji S Srinivasan; Jaleh Doostzadeh; Farnaz Absalan; Sharareh Mohandessi; Roxana Jalili; Saharnaz Bigdeli; Justin Wang; Jaydev Mahadevan; Caroline L G Lee; Ronald W Davis; J William Langston; Mostafa Ronaghi
Whole genome survey of coding SNPs reveals a reproducible pathway determinant of Parkinson disease.
Human mutation 2009;30(2):228-38.
2009: Junhee Seok; wenzhong xiao; Lyle L Moldawer; Ronald W Davis; Markus W Covert
A dynamic network of transcription in LPS-treated human subjects.
BMC systems biology 2009;3():78.
2009: Wei-Jun Qian; Tao Liu; Vladislav A Petyuk; Marina A Gritsenko; Brianne O Petritis; Ashoka D Polpitiya; Amit Kaushal; wenzhong xiao; Celeste C Finnerty; Marc G Jeschke; Navdeep Jaitly; Matthew Monroe; Ronald J Moore; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; David N Herndon; David G Camp; Richard D Smith
Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample.
Journal of proteome research 2009;8(1):290-9.
2008: Sebastian J Osterfeld; Heng Yu; Richard S Gaster; Stefano Caramuta; Liang Xu; Shu-Jen Han; Drew A Hall; Robert J Wilson; Shouheng Sun; Robert L White; Ronald W Davis; Nader Pourmand; Shan X Wang
Multiplex protein assays based on real-time magnetic nanotag sensing.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(52):20637-40.
2008: Taavi K Neklesa; Ronald W Davis
Superoxide anions regulate TORC1 and its ability to bind Fpr1:rapamycin complex.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(39):15166-71.
2008: Shawn Hoon; Andrew M Smith; Iain M Wallace; Sundari Suresh; Molly Miranda; Eula Fung; Michael Proctor; Kevan M Shokat; Chao Zhang; Ronald W Davis; Guri Giaever; Robert P St Onge; Robert P StOnge; Corey Nislow
An integrated platform of genomic assays reveals small-molecule bioactivities.
Nature chemical biology 2008;4(8):498-506.
2008: E Jedediah Dean; Jerel C Davis; Ronald W Davis; Dmitri Petrov
Pervasive and persistent redundancy among duplicated genes in yeast.
PLoS genetics 2008;4(7):e1000113.
2008: Aman Russom; Palaniappan Sethu; daniel irimia; Michael N Mindrinos; Steve E Calvano; Iris Garcia; Celeste Finnerty; Cynthia Tannahill; Amer Abouhamze; Julie Wilhelmy; M Cecilia López; Henry Baker; David N Herndon; Stephen F Lowry; Ronald V Maier; Ronald W Davis; Lyle L Moldawer; Ronald G Tompkins; Mehmet Toner
Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.
Clinical chemistry 2008;54(5):891-900.
2008: Saharnaz Bigdeli; AmirAli H Talasaz; Patrik Ståhl; Henrik H J Persson; Mostafa Ronaghi; Ronald W Davis; Mohsen Nemat-Gorgani
Conformational flexibility of a model protein upon immobilization on self-assembled monolayers.
Biotechnology and bioengineering 2008;100(1):19-27.
2008: Maureen E Hillenmeyer; Eula Fung; Jan Wildenhain; Sarah E Pierce; Shawn Hoon; William Lee; Michael Proctor; Robert P St Onge; Mike Tyers; Daphne Koller; Russ B Altman; Ronald W Davis; Corey Nislow; Guri Giaever
The chemical genomic portrait of yeast: uncovering a phenotype for all genes.
Science (New York, N.Y.) 2008;320(5874):362-5.
2008: Simon Fredriksson; Joe Horecka; Odd Terje Brustugun; Joerg Schlingemann; Albert C Koong; Rob Tibshirani; Ronald W Davis
Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer.
Clinical chemistry 2008;54(3):582-9.
2008: Julie Doostzadeh; Shadi Shokralla; Farnaz Absalan; Roxana Jalili; Sharareh Mohandessi; J William Langston; Ronald W Davis; Mostafa Ronaghi; Baback Gharizadeh
High throughput automated allele frequency estimation by pyrosequencing.
PloS one 2008;3(7):e2693.
2008: Angela M Chu; Ronald W Davis
High-throughput creation of a whole-genome collection of yeast knockout strains.
Methods in molecular biology (Clifton, N.J.) 2008;416():205-20.
2007: Keith M Anderson; Laurent Jaquinod; Michael A Jensen; Nam Ngo; Ronald W Davis
A novel catechol-based universal support for oligonucleotide synthesis.
The Journal of organic chemistry 2007;72(26):9875-80.
2007: Ronald W Davis; Daniel Weihs
Locomotion in diving elephant seals: physical and physiological constraints.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2007;362(1487):2141-50.
2007: William Lee; Desiree Tillo; Nicolas Bray; Randall H Morse; Ronald W Davis; Timothy R Hughes; Corey Nislow
A high-resolution atlas of nucleosome occupancy in yeast.
Nature genetics 2007;39(10):1235-44.
2007: Wu Wei; John H McCusker; Richard W Hyman; Ted Jones; Ye Ning; Zhiwei Cao; Zhenglong Gu; Dan Bruno; Molly Miranda; Michelle Nguyen; Julie Wilhelmy; Caridad Komp; Raquel Tamse; Xiaojing Wang; Peilin Jia; Philippe Luedi; Peter J Oefner; Lior David; Fred S Dietrich; Yixue Li; Ronald W Davis; Lars M Steinmetz
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(31):12825-30.
2007: Fredrik Dahl; Johan Stenberg; Simon Fredriksson; Katrina Welch; Michael Zhang; Mats Nilsson; David C Bicknell; Walter F Bodmer; Ronald W Davis; Hanlee Ji
Multigene amplification and massively parallel sequencing for cancer mutation discovery.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(22):9387-92.
2007: Nader Pourmand; Stefano Caramuta; Andrea Villablanca; Silvia Mori; Miloslav Karhanek; Shan X Wang; Ronald W Davis
Branch migration displacement assay with automated heuristic analysis for discrete DNA length measurement using DNA microarrays.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(15):6146-51.
2007: Simon Fredriksson; William Dixon; Hanlee Ji; Albert C Koong; Michael N Mindrinos; Ronald W Davis
Multiplexed protein detection by proximity ligation for cancer biomarker validation.
Nature methods 2007;4(4):327-9.
2007: Nadine C Gassner; Craig M Tamble; Jonathan E Bock; Naomi Cotton; Kimberly N White; Karen Tenney; Robert P St Onge; Michael J Proctor; Guri Giaever; Corey Nislow; Ronald W Davis; Phillip Crews; Theodore R. Holman; Scott RS Lokey
Accelerating the discovery of biologically active small molecules using a high-throughput yeast halo assay.
Journal of natural products 2007;70(3):383-90.
2007: Robert P St Onge; Ramamurthy Mani; Julia Oh; Michael Proctor; Eula Fung; Ronald W Davis; Corey Nislow; Frederick P Roth; Guri Giaever
Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions.
Nature genetics 2007;39(2):199-206.
2007: Kara Juneau; Curtis Palm; Molly Miranda; Ronald W Davis
High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(5):1522-7.
2007: Mehdi Javanmard; AmirAli H Talasaz; Mohsen Nemat-Gorgani; Fabian Pease; Mostafa Ronaghi; Ronald W Davis
Targeted cell detection based on microchannel gating.
Biomicrofluidics 2007;1(4):44103.
2007: Yiorgos Apidianakis; Michael N Mindrinos; wenzhong xiao; George Tegos; Michail I Papisov; Michael Hamblin; Ronald W Davis; Ronald G Tompkins; Laurence G Rahme
Involvement of skeletal muscle gene regulatory network in susceptibility to wound infection following trauma.
PloS one 2007;2(12):e1356.
2007: Michael Akhras; Magnus Unemo; Sreedevi Thiyagarajan; Pål Nyrén; Ronald W Davis; Andrew Fire; Nader Pourmand
Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications.
PloS one 2007;2(9):e915.
2007: Simon Fredriksson; Johan Banér; Fredrik Dahl; Angela Chu; Hanlee Ji; Katrina Welch; Ronald W Davis
Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector.
Nucleic acids research 2007;35(7):e47.
2007: Michael Akhras; Sreedevi Thiyagarajan; Andrea C Villablanca; Ronald W Davis; Pål Nyrén; Nader Pourmand
PathogenMip assay: a multiplex pathogen detection assay.
PloS one 2007;2(2):e223.
2007: Julie Doostzadeh; Ronald W Davis; Guri Giaever; Corey Nislow; J William Langston
Chemical genomic profiling for identifying intracellular targets of toxicants producing Parkinson's disease.
Toxicological sciences : an official journal of the Society of Toxicology 2007;95(1):182-7.
2007: Rebecca R Watson; Shane B Kanatous; Daniel F Cowan; Julie W Wen; Violet C Han; Ronald W Davis
Volume density and distribution of mitochondria in harbor seal (Phoca vitulina) skeletal muscle.
Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology 2007;177(1):89-98.
2006: Senkei Umehara; Nader Pourmand; Chris D Webb; Ronald W Davis; Kenji Yasuda; Miloslav Karhanek
Current rectification with poly-l-lysine-coated quartz nanopipettes.
Nano letters 2006;6(11):2486-92.
2006: Krzysztof Laudanski; Carol Miller-Graziano; wenzhong xiao; Michael N Mindrinos; Daniel R Richards; Asit De; Lyle L Moldawer; Ronald V Maier; Paul E Bankey; Henry Baker; Bernard H Brownstein; J Perren Cobb; Steve E Calvano; Ronald W Davis; Ronald G Tompkins
Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(42):15564-9.
2006: Tao Liu; Wei-Jun Qian; Marina A Gritsenko; wenzhong xiao; Lyle L Moldawer; Amit Kaushal; Matthew Monroe; Susan M Varnum; Ronald J Moore; Samuel O Purvine; Ronald V Maier; Ronald W Davis; Ronald G Tompkins; David G Camp; Richard D Smith
High dynamic range characterization of the trauma patient plasma proteome.
Molecular & cellular proteomics : MCP 2006;5(10):1899-913.
2006: Stephen Patrick Walton; Michael N Mindrinos; Ronald W Davis
Analysis of hybridization on the molecular barcode GeneChip microarray.
Biochemical and biophysical research communications 2006;348(2):689-96.
2006: Hanlee Ji; Ronald W Davis
Data quality in genomics and microarrays.
Nature biotechnology 2006;24(9):1112-3.
2006: Kara Juneau; Molly Miranda; Maureen E Hillenmeyer; Corey Nislow; Ronald W Davis
Introns regulate RNA and protein abundance in yeast.
Genetics 2006;174(1):511-8.
2006: Hanlee Ji; Jochen Kumm; Michael Zhang; Kyle Farnam; Keyan Salari; Malek Faham; James M Ford; Ronald W Davis
Molecular inversion probe analysis of gene copy alterations reveals distinct categories of colorectal carcinoma.
Cancer research 2006;66(16):7910-9.
2006: Sarah E Pierce; Eula L Fung; Daniel F Jaramillo; Angela M Chu; Ronald W Davis; Corey Nislow; Guri Giaever
A unique and universal molecular barcode array.
Nature methods 2006;3(8):601-3.
2006: Jacob M Zahn; Rebecca Sonu; Hannes Vogel; Emily Crane; Krystyna Mazan-Mamczarz; Ralph Rabkin; Ronald W Davis; Kevin G Becker; Art B Owen; Stuart K Kim
Transcriptional profiling of aging in human muscle reveals a common aging signature.
PLoS genetics 2006;2(7):e115.
2006: T J Wright; Ronald W Davis
The effect of myoglobin concentration on aerobic dive limit in a Weddell seal.
The Journal of experimental biology 2006;209(Pt 13):2576-85.
2006: Lori K Polasek; K A Dickson; Ronald W Davis
Metabolic indicators in the skeletal muscles of harbor seals (Phoca vitulina).
American journal of physiology. Regulatory, integrative and comparative physiology 2006;290(6):R1720-7.
2006: Nader Pourmand; Miloslav Karhanek; Henrik H J Persson; Chris D Webb; Thomas H Lee; Alexandra Zahradníková; Ronald W Davis
Direct electrical detection of DNA synthesis.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(17):6466-70.
2006: Elahe Elahi; Ahmad Khodadad; Ilya Kupershmidt; Fereshteh Ghasemi; Babak Alinasab; Ramin Naghizadeh; Robert G Eason; Mahshid Amini; Mehran Esmaili; Mohammad R Esmaeili Dooki; Mohammad Hossein Sanati; Ronald W Davis; Mostafa Ronaghi; Yvonne R Thorstenson
A haplotype framework for cystic fibrosis mutations in Iran.
The Journal of molecular diagnostics : JMD 2006;8(1):119-27.
2006: Nader Pourmand; Lisa Diamond; Rebecca Garten; Julianna P Erickson; Jochen Kumm; Ruben O Donis; Ronald W Davis
Rapid and highly informative diagnostic assay for H5N1 influenza viruses.
PloS one 2006;1():e95.
2006: Sreedevi Thiyagarajan; Miloslav Karhanek; Michael Akhras; Ronald W Davis; Nader Pourmand
PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens.
BMC bioinformatics 2006;7():500.
2005: Adam M Deutschbauer; Ronald W Davis
Quantitative trait loci mapped to single-nucleotide resolution in yeast.
Nature genetics 2005;37(12):1333-40.
2005: Steve E Calvano; wenzhong xiao; Daniel R Richards; Felciano Ramon; Henry Baker; Raymond J Cho; Richard O Chen; Bernard H Brownstein; J Perren Cobb; S Kevin Tschoeke; Carol Miller-Graziano; Lyle L Moldawer; Michael N Mindrinos; Ronald W Davis; Ronald G Tompkins; Stephen F Lowry
A network-based analysis of systemic inflammation in humans.
Nature 2005;437(7061):1032-7.
2005: Malek Faham; Jianbiao Zheng; Martin Moorhead; Hossein Fakhrai-Rad; Eugeni Namsaraev; Kee Wong; Zhiyong Wang; Shu G Chow; Liana Lee; Kent Suyenaga; Jennifer Reichert; Andrew Boudreau; Jim Eberle; Carsten Bruckner; Maneesh Jain; George Karlin-Neumann; Hywel B Jones; Thomas D Willis; Joseph Buxbaum; Ronald W Davis
Multiplexed variation scanning for 1,000 amplicons in hundreds of patients using mismatch repair detection (MRD) on tag arrays.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(41):14717-22.
2005: John D Storey; wenzhong xiao; Jeffrey T Leek; Ronald G Tompkins; Ronald W Davis
Significance analysis of time course microarray experiments.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(36):12837-42.
2005: Jennifer T Kemp; Ronald W Davis; Robert L White; Shan X Wang; Chris D Webb
A novel method for STR-based DNA profiling using microarrays.
Journal of forensic sciences 2005;50(5):1109-13.
2005: William Lee; Robert P St Onge; Michael Proctor; Patrick Flaherty; Michael I Jordan; Adam P Arkin; Ronald W Davis; Corey Nislow; Guri Giaever
Genome-wide requirements for resistance to functionally distinct DNA-damaging agents.
PLoS genetics 2005;1(2):e24.
2005: Arjang Hassibi; Christopher Contag; Marcel O Vlad; Maryam Hafezi; Thomas H Lee; Ronald W Davis; Nader Pourmand
Bioluminescence regenerative cycle (BRC) system: theoretical considerations for nucleic acid quantification assays.
Biophysical chemistry 2005;116(3):175-85.
2005: Wei-Jun Qian; Matthew Monroe; Tao Liu; Jon M Jacobs; Gordon A Anderson; Yufeng Shen; Ronald J Moore; David J Anderson; Rui Zhang; Steve E Calvano; Stephen F Lowry; wenzhong xiao; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; David G Camp; Richard D Smith
Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.
Molecular & cellular proteomics : MCP 2005;4(5):700-9.
2005: Adam M Deutschbauer; Daniel F Jaramillo; Michael Proctor; Jochen Kumm; Maureen E Hillenmeyer; Ronald W Davis; Corey Nislow; Guri Giaever
Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast.
Genetics 2005;169(4):1915-25.
2005: Yiorgos Apidianakis; Michael N Mindrinos; wenzhong xiao; Gee W Lau; Regina L Baldini; Ronald W Davis; Laurence G Rahme
Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(7):2573-8.
2005: Miloslav Karhanek; Jennifer T Kemp; Nader Pourmand; Ronald W Davis; Chris D Webb
Single DNA molecule detection using nanopipettes and nanoparticles.
Nano letters 2005;5(2):403-7.
2005: Paul Hardenbol; Fuli Yu; John W Belmont; Jennifer Mackenzie; Carsten Bruckner; Tiffany Brundage; Andrew Boudreau; Steve Chow; Jim Eberle; Ayca Erbilgin; Matthew Falkowski; Ron Fitzgerald; Sy Ghose; Oleg Iartchouk; Maneesh Jain; George Karlin-Neumann; Xiuhua Lu; Xin Miao; Bridget Moore; Martin Moorhead; Eugeni Namsaraev; Shiran Pasternak; Eunice Prakash; Karen Tran; Zhiyong Wang; Hywel B Jones; Ronald W Davis; Thomas D Willis; Richard A Gibbs
Highly multiplexed molecular inversion probe genotyping: over 10,000 targeted SNPs genotyped in a single tube assay.
Genome research 2005;15(2):269-75.
2005: Wei-Jun Qian; Jon M Jacobs; David G Camp; Matthew Monroe; Ronald J Moore; Marina A Gritsenko; Steve E Calvano; Stephen F Lowry; wenzhong xiao; Lyle L Moldawer; Ronald W Davis; Ronald G Tompkins; Richard D Smith
Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry.
Proteomics 2005;5(2):572-84.
2005: Zhenglong Gu; Lior David; Dmitri Petrov; Ted Jones; Ronald W Davis; Lars M Steinmetz
Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(4):1092-7.
2005: Yuker Wang; Martin Moorhead; George Karlin-Neumann; Matthew Falkowski; Chunnuan Chen; Farooq Siddiqui; Ronald W Davis; Thomas D Willis; Malek Faham
Allele quantification using molecular inversion probes (MIP).
Nucleic acids research 2005;33(21):e183.
2004: Graham E J Rodwell; Rebecca Sonu; Jacob M Zahn; James Lund; Julie Wilhelmy; Lingli Wang; wenzhong xiao; Michael N Mindrinos; Emily Crane; Eran Segal; Bryan D Myers; James D Brooks; Ronald W Davis; John Higgins; Art B Owen; Stuart K Kim
A transcriptional profile of aging in the human kidney.
PLoS biology 2004;2(12):e427.
2004: Robert J Feezor; Henry Baker; Michael N Mindrinos; Doug Hayden; Cynthia L Tannahill; Bernard H Brownstein; Adrian Fay; Sandra MacMillan; Jason Laramie; wenzhong xiao; Lyle L Moldawer; J Perren Cobb; Krzysztof Laudanski; Carol Miller-Graziano; Ronald V Maier; David Schoenfeld; Ronald W Davis; Ronald G Tompkins
Whole blood and leukocyte RNA isolation for gene expression analyses.
Physiological genomics 2004;19(3):247-54.
2004: Chung-Yu Lan; Gabriel Rodarte; Luis A Murillo; Ted Jones; Ronald W Davis; Jan Dungan; George Newport; Nina Agabian
Regulatory networks affected by iron availability in Candida albicans.
Molecular microbiology 2004;53(5):1451-69.
2004: Robert G Eason; Nader Pourmand; Waraporn Tongprasit; Zelek S Herman; Kevin Anthony; Olufisayo Jejelowo; Ronald W Davis; Viktor Stolc
Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(30):11046-51.
2004: Mark Petronczki; Barbara Chwalla; Maria F Siomos; Shihori Yokobayashi; Wolfgang Helmhart; Adam M Deutschbauer; Ronald W Davis; Yoshinori Watanabe; Kim Nasmyth
Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II.
Journal of cell science 2004;117(Pt 16):3547-59.
2004: Ronald W Davis; Lori K Polasek; Rebecca Watson; Amanda Fuson; Terrie M Williams; Shane B Kanatous
The diving paradox: new insights into the role of the dive response in air-breathing vertebrates.
Comparative biochemistry and physiology. Part A, Molecular & integrative physiology 2004;138(3):263-8.
2004: Hossein Fakhrai-Rad; Jianbiao Zheng; Thomas D Willis; Kee Wong; Kent Suyenaga; Martin Moorhead; Jim Eberle; Yvonne R Thorstenson; Ted Jones; Ronald W Davis; Eugeni Namsaraev; Malek Faham
SNP discovery in pooled samples with mismatch repair detection.
Genome research 2004;14(7):1404-12.
2004: Holger Prokisch; Curt Scharfe; David G Camp; wenzhong xiao; Lior David; Christophe Andreoli; Matthew Monroe; Ronald J Moore; Marina A Gritsenko; Christian Kozany; Kim K Hixson; Heather M Mottaz; Hans Zischka; Marius Ueffing; Zelek S Herman; Ronald W Davis; Thomas Meitinger; Peter J Oefner; Richard D Smith; Lars M Steinmetz
Integrative analysis of the mitochondrial proteome in yeast.
PLoS biology 2004;2(6):e160.
2004: Robert J Feezor; Henry Baker; wenzhong xiao; W Anthony Lee; Thomas S Huber; Michael N Mindrinos; Raymond A Kim; Laurence Ruiz-Taylor; Lyle L Moldawer; Ronald W Davis; James M Seeger
Genomic and proteomic determinants of outcome in patients undergoing thoracoabdominal aortic aneurysm repair.
Journal of immunology (Baltimore, Md. : 1950) 2004;172(11):7103-9.
2004: Ted Jones; Nancy A Federspiel; Hiroji Chibana; Jan Dungan; Sue Kalman; Beatrice B Magee; George Newport; Yvonne R Thorstenson; Nina Agabian; P T Magee; Ronald W Davis; Stewart Scherer
The diploid genome sequence of Candida albicans.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(19):7329-34.
2004: Josip Blonder; Michael B Goshe; wenzhong xiao; David G Camp; Mark Wingerd; Ronald W Davis; Richard D Smith
Global analysis of the membrane subproteome of Pseudomonas aeruginosa using liquid chromatography-tandem mass spectrometry.
Journal of proteome research 2004;3(3):434-44.
2004: Lars M Steinmetz; Ronald W Davis
Maximizing the potential of functional genomics.
Nature reviews. Genetics 2004;5(3):190-201.
2004: Yufeng Shen; Jon M Jacobs; David G Camp; Ruihua Fang; Ronald J Moore; Richard D Smith; wenzhong xiao; Ronald W Davis; Ronald G Tompkins
Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome.
Analytical chemistry 2004;76(4):1134-44.
2004: Terrie M Williams; Lee A Fuiman; Markus Horning; Ronald W Davis
The cost of foraging by a marine predator, the Weddell seal Leptonychotes weddellii: pricing by the stroke.
The Journal of experimental biology 2004;207(Pt 6):973-82.
2004: Guri Giaever; Patrick Flaherty; Jochen Kumm; Michael Proctor; Corey Nislow; Daniel F Jaramillo; Angela M Chu; Michael I Jordan; Adam P Arkin; Ronald W Davis
Chemogenomic profiling: identifying the functional interactions of small molecules in yeast.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(3):793-8.
2004: Ali Agah; Mariam Aghajan; Foad Mashayekhi; Sasan Amini; Ronald W Davis; James D Plummer; Mostafa Ronaghi; Peter B Griffin
A multi-enzyme model for Pyrosequencing.
Nucleic acids research 2004;32(21):e166.
2004: Qun-Tian T Wang; Karolina Piotrowska; Maria Anna Ciemerych; Ljiljana Milenkovic; Matthew P Scott; Ronald W Davis; Magdalena Zernicka-Goetz
A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo.
Developmental cell 2004;6(1):133-44.
2003: Amanda L Fuson; Daniel F Cowan; Shane B Kanatous; Lori K Polasek; Ronald W Davis
Adaptations to diving hypoxia in the heart, kidneys and splanchnic organs of harbor seals (Phoca vitulina).
The Journal of experimental biology 2003;206(Pt 22):4139-54.
2003: Rebecca R Watson; Todd A Miller; Ronald W Davis
Immunohistochemical fiber typing of harbor seal skeletal muscle.
The Journal of experimental biology 2003;206(Pt 22):4105-11.
2003: Maneesh Jain; Yvonne R Thorstenson; David M Faulkner; Nader Pourmand; Ted Jones; Melinda Au; Peter J Oefner; Kevin P White; Ronald W Davis
Genotyping African haplotypes in ATM using a co-spotted single-base extension assay.
Human mutation 2003;22(3):214-21.
2003: Yvonne R Thorstenson; Adriane Roxas; Regina Kroiss; Mark A Jenkins; Kristine M Yu; Thomas Bachrich; Daniela Muhr; Tierney L Wayne; Gilbert Chu; Ronald W Davis; Teresa M U Wagner; Peter J Oefner
Contributions of ATM mutations to familial breast and ovarian cancer.
Cancer research 2003;63(12):3325-33.
2003: Paul Hardenbol; Johan Banér; Maneesh Jain; Mats Nilsson; Eugeni Namsaraev; George Karlin-Neumann; Hossein Fakhrai-Rad; Mostafa Ronaghi; Thomas D Willis; Ulf Landegren; Ronald W Davis
Multiplexed genotyping with sequence-tagged molecular inversion probes.
Nature biotechnology 2003;21(6):673-8.
2003: Elahe Elahi; Nader Pourmand; Ramsey Chaung; Ara Rofoogaran; Judie Boisver; Katayon Samimi-Rad; Ronald W Davis; Mostafa Ronaghi
Determination of hepatitis C virus genotype by Pyrosequencing.
Journal of virological methods 2003;109(2):171-6.
2003: Zhenglong Gu; Lars M Steinmetz; Xun Gu; Curt Scharfe; Ronald W Davis; Wen-Hsiung Li
Role of duplicate genes in genetic robustness against null mutations.
Nature 2003;421(6918):63-6.
2002: Shane B Kanatous; Ronald W Davis; R Watson; Lori K Polasek; Terrie M Williams; O Mathieu-Costello
Aerobic capacities in the skeletal muscles of Weddell seals: key to longer dive durations?
The Journal of experimental biology 2002;205(Pt 23):3601-8.
2002: Adam M Deutschbauer; Roy M Williams; Angela M Chu; Ronald W Davis
Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(24):15530-5.
2002: Chung-Yu Lan; George Newport; Luis A Murillo; Ted Jones; Stewart Scherer; Ronald W Davis; Nina Agabian
Metabolic specialization associated with phenotypic switching in Candidaalbicans.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(23):14907-12.
2002: Roy M Williams; Michael Primig; Brian K Washburn; Elizabeth A Winzeler; Michel Bellis; Cyril Sarrauste de Menthiere; Ronald W Davis; Rochelle Easton Esposito
The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(21):13431-6.
2002: Richard W Hyman; Eula Fung; Aaron Conway; Omar Kurdi; Jennifer Mao; Molly Miranda; Brian Nakao; Don Rowley; Tomoaki Tamaki; Fawn Wang; Ronald W Davis
Sequence of Plasmodium falciparum chromosome 12.
Nature 2002;419(6906):534-7.
2002: Qun-Tian T Wang; wenzhong xiao; Michael N Mindrinos; Ronald W Davis
Yeast tRNA as carrier in the isolation of microscale RNA for global amplification and expression profiling.
BioTechniques 2002;33(4):788, 790, 792 passim.
2002: Michelle N Arbeitman; Eileen E M Furlong; Farhad Imam; Eric A Johnson; Brian H Null; Bruce S Baker; Mark A Krasnow; Matthew P Scott; Ronald W Davis; Kevin P White
Gene expression during the life cycle of Drosophila melanogaster.
Science (New York, N.Y.) 2002;297(5590):2270-5.
2002: Lars M Steinmetz; Curt Scharfe; Adam M Deutschbauer; Dejana Mokranjac; Zelek S Herman; Ted Jones; Angela M Chu; Guri Giaever; Holger Prokisch; Peter J Oefner; Ronald W Davis
Systematic screen for human disease genes in yeast.
Nature genetics 2002;31(4):400-4.
2002: Geoff W Birrell; James A Brown; H Irene Wu; Guri Giaever; Angela M Chu; Ronald W Davis; J Martin Brown
Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(13):8778-83.
2002: Nader Pourmand; Elahe Elahi; Ronald W Davis; Mostafa Ronaghi
Multiplex Pyrosequencing.
Nucleic acids research 2002;30(7):e31.
2002: Lars M Steinmetz; Himanshu Sinha; Daniel R Richards; Jamie I Spiegelman; Peter J Oefner; John H McCusker; Ronald W Davis
Dissecting the architecture of a quantitative trait locus in yeast.
Nature 2002;416(6878):326-30.
2002: Teresa M Gunn; Arezou Azarani; Philip H Kim; Richard W Hyman; Ronald W Davis; Gregory S Barsh
Identification and preliminary characterization of mouse Adam33.
BMC genetics 2002;3():2.
2001: Geoff W Birrell; Guri Giaever; Angela M Chu; Ronald W Davis; J Martin Brown
A genome-wide screen in Saccharomyces cerevisiae for genes affecting UV radiation sensitivity.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(22):12608-13.
2001: Mosur K Raghuraman; Elizabeth A Winzeler; David Collingwood; S Hunt; Lisa M Wodicka; AR Conway; David J Lockhart; Ronald W Davis; Bonita J Brewer; Walton L Fangman
Replication dynamics of the yeast genome.
Science (New York, N.Y.) 2001;294(5540):115-21.
2001: Melanie J Barnett; Robert F Fisher; Ted Jones; Caridad Komp; Anna Pia Abola; Frédérique Barloy-Hubler; L Bowser; Delphine Capela; Francis Galibert; Jérôme Gouzy; M Gurjal; A Hong; L Huizar; Richard W Hyman; Daniel Kahn; M L Kahn; Sue Kalman; David H Keating; Curtis Palm; Melicent C Peck; R Surzycki; Derek H Wells; K C Yeh; Ronald W Davis; Nancy A Federspiel; Sharon R Long
Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(17):9883-8.
2001: Yvonne R Thorstenson; Peidong Shen; Virginia Goss Tusher; Tierney L Wayne; Ronald W Davis; Gilbert Chu; Peter J Oefner
Global analysis of ATM polymorphism reveals significant functional constraint.
American journal of human genetics 2001;69(2):396-412.
2001: Terrie M Williams; J Haun; Ronald W Davis; Lee A Fuiman; S Kohin
A killer appetite: metabolic consequences of carnivory in marine mammals.
Comparative biochemistry and physiology. Part A, Molecular & integrative physiology 2001;129(4):785-96.
2001: Ronald W Davis; Lee A Fuiman; Terrie M Williams; Burney J Le Boeuf
Three-dimensional movements and swimming activity of a northern elephant seal.
Comparative biochemistry and physiology. Part A, Molecular & integrative physiology 2001;129(4):759-70.
2001: K W Tzung; R M Williams; Stewart Scherer; Nancy A Federspiel; Ted Jones; N Hansen; V Bivolarevic; L Huizar; Caridad Komp; R Surzycki; Raquel Tamse; Ronald W Davis; Nina Agabian
Genomic evidence for a complete sexual cycle in Candida albicans.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(6):3249-53.
2001: Jonathan Nakane; D Broemeling; R Donaldson; Andre Marziali; TD Willis; M O'Keefe; Ronald W Davis
A method for parallel, automated, thermal cycling of submicroliter samples.
Genome research 2001;11(3):441-7.
2001: RJ Cho; Mingxia Huang; M J Campbell; H Dong; Lars M Steinmetz; Lisa M Sapinoso; G Hampton; S J Elledge; Ronald W Davis; David J Lockhart
Transcriptional regulation and function during the human cell cycle.
Nature genetics 2001;27(1):48-54.
2001: Lori K Polasek; Ronald W Davis
Heterogeneity of myoglobin distribution in the locomotory muscles of five cetacean species.
The Journal of experimental biology 2001;204(Pt 2):209-15.
2000: Cathal Seoighe; Nancy A Federspiel; Ted Jones; N Hansen; V Bivolarovic; R Surzycki; Raquel Tamse; Caridad Komp; L Huizar; Ronald W Davis; Stewart Scherer; E Tait; Duncan J Shaw; D Harris; Lee Murphy; K Oliver; K Taylor; Marie-Adele Rajandream; Bart Barrell; Kenneth H Wolfe
Prevalence of small inversions in yeast gene order evolution.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(26):14433-7.
2000: Eliana Drenkard; B G Richter; S Rozen; L M Stutius; N A Angell; Michael N Mindrinos; R J Cho; P J Oefner; Ronald W Davis; Frederick M Ausubel
A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis.
Plant physiology 2000;124(4):1483-92.
2000: Michael Primig; R M Williams; Elizabeth A Winzeler; Gela G Tevzadze; A R Conway; S Y Hwang; Ronald W Davis; Rochelle Easton Esposito
The core meiotic transcriptome in budding yeasts.
Nature genetics 2000;26(4):415-23.
2000: Peter A Underhill; Peidong Shen; Alice A Lin; L Jin; Giuseppe Passarino; Wei-Hsien Yang; E Kauffman; B Bonné-Tamir; Jaume Bertranpetit; Paolo Francalacci; M Ibrahim; T Jenkins; Judith R Kidd; S Qasim Mehdi; Mark Seielstad; R Spencer Wells; A Piazza; Ronald W Davis; marcel salathe; L Luca Cavalli-Sforza; Peter J Oefner
Y chromosome sequence variation and the history of human populations.
Nature genetics 2000;26(3):358-61.
2000: Peidong Shen; F Wang; Peter A Underhill; C Franco; Wei-Hsien Yang; Adriane Roxas; Raphael Sung; Alice A Lin; Richard W Hyman; Douglas Vollrath; Ronald W Davis; L Luca Cavalli-Sforza; Peter J Oefner
Population genetic implications from sequence variation in four Y chromosome genes.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(13):7354-9.
2000: Terrie M Williams; Ronald W Davis; Lee A Fuiman; J Francis; Burney J Le Boeuf; M Horning; J Calambokidis; Donald A Croll
Sink or swim: strategies for cost-efficient diving by marine mammals.
Science (New York, N.Y.) 2000;288(5463):133-6.
2000: Lars M Steinmetz; Ronald W Davis
High-density arrays and insights into genome function.
Biotechnology & genetic engineering reviews 2000;17():109-46.
2000: Curtis Palm; N A Federspiel; Ronald W Davis
DAtA: database of Arabidopsis thaliana annotation.
Nucleic acids research 2000;28(1):102-3.
1999: RJ Cho; Michael N Mindrinos; Daniel R Richards; R J Sapolsky; M Anderson; Eliana Drenkard; Julia Dewdney; TL Reuber; M Stammers; Nancy A Federspiel; A Theologis; Wei-Hsien Yang; E Hubbell; M Au; E Y Chung; DA Lashkari; B Lemieux; C Dean; Rob Lipshutz; F M Ausubel; Ronald W Davis; Peter J Oefner
Genome-wide mapping with biallelic markers in Arabidopsis thaliana.
Nature genetics 1999;23(2):203-7.
1999: R C Skrovan; Terrie M Williams; P S Berry; Patrick W Moore; Ronald W Davis
The diving physiology of bottlenose dolphins (Tursiops truncatus). II. Biomechanics and changes in buoyancy at depth.
The Journal of experimental biology 1999;202(Pt 20):2749-61.
1999: Andre Marziali; TD Willis; N A Federspiel; Ronald W Davis
An automated sample preparation system for large-scale DNA sequencing.
Genome research 1999;9(5):457-62.
1999: Ronald W Davis; Shane B Kanatous
Convective oxygen transport and tissue oxygen consumption in Weddell seals during aerobic dives.
The Journal of experimental biology 1999;202(Pt 9):1091-113.
1999: Shane B Kanatous; L V DiMichele; Daniel F Cowan; Ronald W Davis
High aerobic capacities in the skeletal muscles of pinnipeds: adaptations to diving hypoxia.
Journal of applied physiology (Bethesda, Md. : 1985) 1999;86(4):1247-56.
1999: Sue Kalman; W Mitchell; R Marathe; CJ Lammel; J Fan; Richard W Hyman; Lynn Olinger; Jane Grimwood; Ronald W Davis; Richard S Stephens
Comparative genomes of Chlamydia pneumoniae and C. trachomatis.
Nature genetics 1999;21(4):385-9.
1999: L Jin; Peter A Underhill; V Doctor; Ronald W Davis; Peidong Shen; L Luca Cavalli-Sforza; Peter J Oefner
Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(7):3796-800.
1999: Teresa M Gunn; KA Miller; L He; Richard W Hyman; Ronald W Davis; Arezou Azarani; Stuart F Schlossman; Jonathan S Duke-Cohan; Gregory S Barsh
The mouse mahogany locus encodes a transmembrane form of human attractin.
Nature 1999;398(6723):152-6.
1999: Guri Giaever; D D Shoemaker; T W Jones; H Liang; Elizabeth A Winzeler; A Astromoff; Ronald W Davis
Genomic profiling of drug sensitivities via induced haploinsufficiency.
Nature genetics 1999;21(3):278-83.
1999: Andre Marziali; TD Willis; Ronald W Davis
An arrayable flow-through microcentrifuge for high-throughput instrumentation.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(1):61-6.
1999: Elizabeth A Winzeler; B Lee; John H McCusker; Ronald W Davis
Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.
Parasitology 1999;118 Suppl():S73-80.
1998: Richard S Stephens; Sue Kalman; CJ Lammel; J Fan; R Marathe; L Aravind; W Mitchell; Lynn Olinger; R L Tatusov; Q Zhao; E V Koonin; Ronald W Davis
Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.
Science (New York, N.Y.) 1998;282(5389):754-9.
1998: Elizabeth A Winzeler; Daniel R Richards; AR Conway; Alan L Goldstein; Sue Kalman; Michael J McCullough; John H McCusker; David A Stevens; Lisa M Wodicka; David J Lockhart; Ronald W Davis
Direct allelic variation scanning of the yeast genome.
Science (New York, N.Y.) 1998;281(5380):1194-7.
1998: Yvonne R Thorstenson; S P Hunicke-Smith; Peter J Oefner; Ronald W Davis
An automated hydrodynamic process for controlled, unbiased DNA shearing.
Genome research 1998;8(8):848-55.
1998: RJ Cho; M J Campbell; Elizabeth A Winzeler; Lars M Steinmetz; AR Conway; Lisa M Wodicka; Tyra G Wolfsberg; AE Gabrielian; David Landsman; David J Lockhart; Ronald W Davis
A genome-wide transcriptional analysis of the mitotic cell cycle.
Molecular cell 1998;2(1):65-73.
1998: M Schena; R A Heller; T P Theriault; K Konrad; E Lachenmeier; Ronald W Davis
Microarrays: biotechnology's discovery platform for functional genomics.
Trends in biotechnology 1998;16(7):301-6.
1998: RJ Cho; Micheline Fromont-Racine; Lisa M Wodicka; Becket Feierbach; Tim Stearns; Pierre Legrain; David J Lockhart; Ronald W Davis
Parallel analysis of genetic selections using whole genome oligonucleotide arrays.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(7):3752-7.
1998: F D Agyare; G Lagos; DA Lashkari; Ronald W Davis; B Lemieux
Mapping cloned sequences on YACs.
Methods in molecular biology (Clifton, N.J.) 1998;82():199-208.
1997: DA Lashkari; Joe L DeRisi; John H McCusker; A F Namath; C Gentile; S Y Hwang; Patrick O Brown; Ronald W Davis
Yeast microarrays for genome wide parallel genetic and gene expression analysis.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(24):13057-62.
1997: Peter A Underhill; L Jin; Alice A Lin; S Qasim Mehdi; T Jenkins; Douglas Vollrath; Ronald W Davis; L Luca Cavalli-Sforza; Peter J Oefner
Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography.
Genome research 1997;7(10):996-1005.
1997: DA Lashkari; John H McCusker; Ronald W Davis
Whole genome analysis: experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(17):8945-7.
1997: BD Lewis; George Karlin-Neumann; Ronald W Davis; Edgar P Spalding
Ca(2+)-activated anion channels and membrane depolarizations induced by blue light and cold in Arabidopsis seedlings.
Plant physiology 1997;114(4):1327-34.
1997: Karl V Clemons; P Park; John H McCusker; Michael J McCullough; Ronald W Davis; David A Stevens
Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces isolates.
Journal of clinical microbiology 1997;35(7):1822-8.
1997: Fred S Dietrich; J Mulligan; K Hennessy; M A Yelton; E Allen; R Araujo; E Aviles; Anthony J Berno; T Brennan; J Carpenter; E Chen; J M Cherry; E Chung; M Duncan; E Guzman; G Hartzell; S Hunicke-Smith; Richard W Hyman; A Kayser; Caridad Komp; D Lashkari; H Lew; D Lin; D Mosedale; Ronald W Davis
The nucleotide sequence of Saccharomyces cerevisiae chromosome V.
Nature 1997;387(6632 Suppl):78-81.
1997: R A Heller; M Schena; A Chai; D Shalon; T Bedilion; J Gilmore; D E Woolley; Ronald W Davis
Discovery and analysis of inflammatory disease-related genes using cDNA microarrays.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(6):2150-5.
1997: F D Agyare; DA Lashkari; A Lagos; A F Namath; G Lagos; Ronald W Davis; B Lemieux
Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.
Genome research 1997;7(1):1-9.
1996: P K Foreman; Ronald W Davis
CDP1, a novel Saccharomyces cerevisiae gene required for proper nuclear division and chromosome segregation.
Genetics 1996;144(4):1387-97.
1996: D D Shoemaker; D A Lashkari; D Morris; M Mittmann; Ronald W Davis
Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.
Nature genetics 1996;14(4):450-6.
1996: P J Oefner; S P Hunicke-Smith; L Chiang; Fred S Dietrich; J Mulligan; Ronald W Davis
Efficient random subcloning of DNA sheared in a recirculating point-sink flow system.
Nucleic acids research 1996;24(20):3879-86.
1996: M Schena; D Shalon; R Heller; A Chai; Patrick O Brown; Ronald W Davis
Parallel human genome analysis: microarray-based expression monitoring of 1000 genes.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(20):10614-9.
1995: M Schena; D Shalon; Ronald W Davis; Patrick O Brown
Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
Science (New York, N.Y.) 1995;270(5235):467-70.
1995: DA Lashkari; S P Hunicke-Smith; R M Norgren; Ronald W Davis; T Brennan
An automated multiplex oligonucleotide synthesizer: development of high-throughput, low-cost DNA synthesis.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(17):7912-5.
1995: DA Lashkari; R M Norgren; Ronald W Davis
Sliding-plate gel caster.
BioTechniques 1995;18(4):625-6.
1995: J K Byron; Karl V Clemons; John H McCusker; Ronald W Davis; David A Stevens
Pathogenicity of Saccharomyces cerevisiae in complement factor five-deficient mice.
Infection and immunity 1995;63(2):478-85.
1994: John H McCusker; Karl V Clemons; David A Stevens; Ronald W Davis
Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae.
Infection and immunity 1994;62(12):5447-55.
1994: M E Galway; James Masucci; A M Lloyd; V Walbot; Ronald W Davis; John Schiefelbein
The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.
Developmental biology 1994;166(2):740-54.
1994: A M Lloyd; M Schena; Virginia Walbot; Ronald W Davis
Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator.
Science (New York, N.Y.) 1994;266(5184):436-9.
1994: M Schena; Ronald W Davis
Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(18):8393-7.
1994: P K Foreman; Ronald W Davis
Cloning vectors for the synthesis of epitope-tagged, truncated and chimeric proteins in Saccharomyces cerevisiae.
Gene 1994;144(1):63-8.
1994: D Preuss; Seung-Yon Rhee; Ronald W Davis
Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.
Science (New York, N.Y.) 1994;264(5164):1458-60.
1994: John H McCusker; Karl V Clemons; David A Stevens; Ronald W Davis
Genetic characterization of pathogenic Saccharomyces cerevisiae isolates.
Genetics 1994;136(4):1261-9.
1994: A M Lloyd; Ronald W Davis
Functional expression of the yeast FLP/FRT site-specific recombination system in Nicotiana tabacum.
Molecular & general genetics : MGG 1994;242(6):653-7.
1993: P K Foreman; Ronald W Davis
Point mutations that separate the role of Saccharomyces cerevisiae centromere binding factor 1 in chromosome segregation from its role in transcriptional activation.
Genetics 1993;135(2):287-96.
1993: D Preuss; B Lemieux; G Yen; Ronald W Davis
A conditional sterile mutation eliminates surface components from Arabidopsis pollen and disrupts cell signaling during fertilization.
Genes & development 1993;7(6):974-85.
1993: M Schena; A M Lloyd; Ronald W Davis
The HAT4 gene of Arabidopsis encodes a developmental regulator.
Genes & development 1993;7(3):367-79.
1993: S W Ramer; Ronald W Davis
A dominant truncation allele identifies a gene, STE20, that encodes a putative protein kinase necessary for mating in Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(2):452-6.
1992: A M Lloyd; Virginia Walbot; Ronald W Davis
Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1.
Science (New York, N.Y.) 1992;258(5089):1773-5.
1992: S W Ramer; Stephen J Elledge; Ronald W Davis
Dominant genetics using a yeast genomic library under the control of a strong inducible promoter.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(23):11589-93.
1992: M Schena; Ronald W Davis
HD-Zip proteins: members of an Arabidopsis homeodomain protein superfamily.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(9):3894-8.
1991: M Schena; A M Lloyd; Ronald W Davis
A steroid-inducible gene expression system for plant cells.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(23):10421-5.
1991: John H McCusker; Ronald W Davis
The use of proline as a nitrogen source causes hypersensitivity to, and allows more economical use of 5FOA in Saccharomyces cerevisiae.
Yeast (Chichester, England) 1991;7(6):607-8.
1991: P K Foreman; Ronald W Davis; A B Sachs
The Saccharomyces cerevisiae RPB4 gene is tightly linked to the TIF2 gene.
Nucleic acids research 1991;19(10):2781.
1991: Stephen J Elledge; John Mulligan; S W Ramer; M Spottswood; Ronald W Davis
Lambda YES: a multifunctional cDNA expression vector for the isolation of genes by complementation of yeast and Escherichia coli mutations.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(5):1731-5.
1990: M Cai; Ronald W Davis
Yeast centromere binding protein CBF1, of the helix-loop-helix protein family, is required for chromosome stability and methionine prototrophy.
Cell 1990;61(3):437-46.
1990: Stephen J Elledge; Ronald W Davis
Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase.
Genes & development 1990;4(5):740-51.
1990: J Braam; Ronald W Davis
Rain-, wind-, and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis.
Cell 1990;60(3):357-64.
1990: Maria Jasin; Stephen J Elledge; Ronald W Davis; Paul Berg
Gene targeting at the human CD4 locus by epitope addition.
Genes & development 1990;4(2):157-66.
1989: Stephen J Elledge; Ronald W Davis
Identification of the DNA damage-responsive element of RNR2 and evidence that four distinct cellular factors bind it.
Molecular and cellular biology 1989;9(12):5373-86.
1989: Stephen J Elledge; Ronald W Davis
DNA damage induction of ribonucleotide reductase.
Molecular and cellular biology 1989;9(11):4932-40.
1989: A B Sachs; Ronald W Davis
The poly(A) binding protein is required for poly(A) shortening and 60S ribosomal subunit-dependent translation initiation.
Cell 1989;58(5):857-67.
1989: C N Traver; S Klapholz; Richard W Hyman; Ronald W Davis
Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(15):5898-902.
1989: M J Cai; Ronald W Davis
Purification of a yeast centromere-binding protein that is able to distinguish single base-pair mutations in its recognition site.
Molecular and cellular biology 1989;9(6):2544-50.
1989: Stephen J Elledge; P Sugiono; L Guarente; Ronald W Davis
Genetic selection for genes encoding sequence-specific DNA-binding proteins.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(10):3689-93.
1989: Stephen J Elledge; Ronald W Davis
Position and density effects on repression by stationary and mobile DNA-binding proteins.
Genes & development 1989;3(2):185-97.
1988: S J Elledge; Ronald W Davis
A family of versatile centromeric vectors designed for use in the sectoring-shuffle mutagenesis assay in Saccharomyces cerevisiae.
Gene 1988;70(2):303-12.
1988: M T Fasullo; Ronald W Davis
Direction of chromosome rearrangements in Saccharomyces cerevisiae by use of his3 recombinational substrates.
Molecular and cellular biology 1988;8(10):4370-80.
1988: Douglas Vollrath; Ronald W Davis; C Connelly; P Hieter
Physical mapping of large DNA by chromosome fragmentation.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(16):6027-31.
1988: N M Crawford; M Smith; D Bellissimo; Ronald W Davis
Sequence and nitrate regulation of the Arabidopsis thaliana mRNA encoding nitrate reductase, a metalloflavoprotein with three functional domains.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(14):5006-10.
1988: Douglas Vollrath; Jeremy Nathans; Ronald W Davis
Tandem array of human visual pigment genes at Xq28.
Science (New York, N.Y.) 1988;240(4859):1669-72.
1988: M J Orbach; Douglas Vollrath; Ronald W Davis; Charles Yanofsky
An electrophoretic karyotype of Neurospora crassa.
Molecular and cellular biology 1988;8(4):1469-73.
1987: Douglas Vollrath; Ronald W Davis
Resolution of DNA molecules greater than 5 megabases by contour-clamped homogeneous electric fields.
Nucleic acids research 1987;15(19):7865-76.
1987: A B Sachs; Ronald W Davis; Roger D Kornberg
A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability.
Molecular and cellular biology 1987;7(9):3268-76.
1987: J R Ecker; Ronald W Davis
Plant defense genes are regulated by ethylene.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(15):5202-6.
1987: Stephen J Elledge; Ronald W Davis
Identification and isolation of the gene encoding the small subunit of ribonucleotide reductase from Saccharomyces cerevisiae: DNA damage-inducible gene required for mitotic viability.
Molecular and cellular biology 1987;7(8):2783-93.
1986: N M Crawford; W H Campbell; Ronald W Davis
Nitrate reductase from squash: cDNA cloning and nitrate regulation.
Proceedings of the National Academy of Sciences of the United States of America 1986;83(21):8073-6.
1986: J R Ecker; Ronald W Davis
Inhibition of gene expression in plant cells by expression of antisense RNA.
Proceedings of the National Academy of Sciences of the United States of America 1986;83(15):5372-6.