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Russ Altman

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Chemicals & Drugs

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Sequence Alignment

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Molecular Structure

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Publications

TOP 3
Garten Yael; Tatonetti Nicholas P; Altman Russ B
Improving the prediction of pharmacogenes using text-derived drug-gene relationships.
Flores Samuel C; Wan Yaqi; Russell Rick; Altman Russ B
Predicting RNA structure by multiple template homology modeling.
Coulet Adrien; Shah Nigam; Hunter Lawrence; Barral Chitta; Altman Russ B
Extraction of genotype-phenotype-drug relationships from text: from entity recognition to bioinformatics application.

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All Publications

2010: Garten Yael; Tatonetti Nicholas P; Altman Russ B
Improving the prediction of pharmacogenes using text-derived drug-gene relationships.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2010;():305-14.
2010: Flores Samuel C; Wan Yaqi; Russell Rick; Altman Russ B
Predicting RNA structure by multiple template homology modeling.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2010;():216-27.
2010: Coulet Adrien; Shah Nigam; Hunter Lawrence; Barral Chitta; Altman Russ B
Extraction of genotype-phenotype-drug relationships from text: from entity recognition to bioinformatics application.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2010;():485-7.
2009: Glazer Dariya S; Radmer Randall J; Altman Russ B
Improving structure-based function prediction using molecular dynamics.
Structure (London, England : 1993) 2009;17(7):919-29.
2009: Altman R B
Direct-to-consumer genetic testing: failure is not an option.
Clinical pharmacology and therapeutics 2009;86(1):15-7.
2009: Marsh Sharon; McLeod Howard; Dolan Eileen; Shukla Sunita J; Rabik Cara A; Gong Li; Hernandez-Boussard Tina; Lou Xing Jian; Klein Teri E; Altman Russ B
Platinum pathway.
Pharmacogenetics and genomics 2009;19(7):563-4.
2009: Owen Ryan P; Sangkuhl Katrin; Klein Teri E; Altman Russ B
Cytochrome P450 2D6.
Pharmacogenetics and genomics 2009;19(7):559-62.
2009: Yang Jun; Bogni Alessia; Schuetz Erin G; Ratain Mark; Dolan M Eileen; McLeod Howard; Gong Li; Thorn Caroline; Relling Mary V; Klein Teri E; Altman Russ B
Etoposide pathway.
Pharmacogenetics and genomics 2009;19(7):552-3.
2009: Thorn Caroline F; Klein Teri E; Altman Russ B
Codeine and morphine pathway.
Pharmacogenetics and genomics 2009;19(7):556-8.
2009: Desta Zeruesenay; Nguyen Anne; Flockhart David; Skaar Todd; Fletcher Rebecca; Weinshilboum Richard; Berlin Dorit S; Klein Teri E; Altman Russ B
Antiestrogen pathway (aromatase inhibitor).
Pharmacogenetics and genomics 2009;19(7):554-5.
2009: Hildebrandt Michelle; Adjei Araba; Weinshilboum Richard; Johnson Julie A; Berlin Dorit S; Klein Teri E; Altman Russ B
Very important pharmacogene summary: sulfotransferase 1A1.
Pharmacogenetics and genomics 2009;19(6):404-6.
2009: Jonikas Magdalena A; Radmer Randall J; Laederach Alain; Das Rhiju; Pearlman Samuel; Herschlag Daniel; Altman Russ B
Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters.
RNA (New York, N.Y.) 2009;15(2):189-99.
2009: Tatonetti Nicholas P; Liu Tianyun; Altman Russ B
Predicting drug side-effects by chemical systems biology.
Genome biology 2009;10(9):238.
2009: Shen-Orr Shai S; Goldberger Ofir; Garten Yael; Rosenberg-Hasson Yael; Lovelace Patricia A; Hirschberg David L; Altman Russ B; Davis Mark M; Butte Atul J
Towards a cytokine-cell interaction knowledgebase of the adaptive immune system.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2009;():439-50.
2009: Garten Yael; Altman Russ B
Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text.
BMC bioinformatics 2009;10 Suppl 2():S6.
2008: Yao Peggy; Dhanik Ankur; Marz Nathan; Propper Ryan; Kou Charles; Liu Guanfeng; van den Bedem Henry; Latombe Jean-Claude; Halperin-Landsberg Inbal; Altman Russ Biagio
Efficient algorithms to explore conformation spaces of flexible protein loops.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2008;5(4):534-45.
2008: Gong Li; Owen Ryan P; Gor Winston; Altman Russ B; Klein Teri E
PharmGKB: an integrated resource of pharmacogenomic data and knowledge.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2008;Chapter 14():Unit14.7.
2008: Mitra Somdeb; Shcherbakova Inna V; Altman Russ B; Brenowitz Michael; Laederach Alain
High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis.
Nucleic acids research 2008;36(11):e63.
2008: Hillenmeyer Maureen E; Fung Eula; Wildenhain Jan; Pierce Sarah E; Hoon Shawn; Lee William; Proctor Michael; St Onge Robert P; Tyers Mike; Koller Daphne; Altman Russ B; Davis Ronald W; Nislow Corey; Giaever Guri
The chemical genomic portrait of yeast: uncovering a phenotype for all genes.
Science (New York, N.Y.) 2008;320(5874):362-5.
2008: Owen Ryan P; Altman Russ B; Klein Teri E
PharmGKB and the International Warfarin Pharmacogenetics Consortium: the changing role for pharmacogenomic databases and single-drug pharmacogenetics.
Human mutation 2008;29(4):456-60.
2008: Das Rhiju; Kudaravalli Madhuri; Jonikas Magdalena; Laederach Alain; Fong Robert; Schwans Jason P; Baker David; Piccirilli Joseph A; Altman Russ B; Herschlag Daniel
Structural inference of native and partially folded RNA by high-throughput contact mapping.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(11):4144-9.
2008: Whirl-Carrillo M; Woon M; Thorn C F; Klein T E; Altman R B
An XML-based interchange format for genotype-phenotype data.
Human mutation 2008;29(2):212-9.
2008: Ebert Jessica C; Altman Russ B
Robust recognition of zinc binding sites in proteins.
Protein science : a publication of the Protein Society 2008;17(1):54-65.
2008: Hernandez-Boussard Tina; Whirl-Carrillo Michelle; Hebert Joan M; Gong Li; Owen Ryan; Gong Mei; Gor Winston; Liu Feng; Truong Chuong; Whaley Ryan; Woon Mark; Zhou Tina; Altman Russ B; Klein Teri E
The pharmacogenetics and pharmacogenomics knowledge base: accentuating the knowledge.
Nucleic acids research 2008;36(Database issue):D913-8.
2008: Sangkuhl Katrin; Berlin Dorit S; Altman Russ B; Klein Teri E
PharmGKB: understanding the effects of individual genetic variants.
Drug metabolism reviews 2008;40(4):539-51.
2008: Altman Russ B; Bergman Casey M; Blake Judith; Blaschke Christian; Cohen Aaron; Gannon Frank; Grivell Les; Hahn Udo; Hersh William; Hirschman Lynette; Jensen Lars Juhl; Krallinger Martin; Mons Barend; O'Donoghue Seán I; Peitsch Manuel C; Rebholz-Schuhmann Dietrich; Shatkay Hagit; Valencia Alfonso
Text mining for biology--the way forward: opinions from leading scientists.
Genome biology 2008;9 Suppl 2():S7.
2008: Halperin Inbal; Glazer Dariya S; Wu Shirley; Altman Russ B
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications.
BMC genomics 2008;9 Suppl 2():S2.
2008: Laederach Alain; Das Rhiju; Vicens Quentin; Pearlman Samuel M; Brenowitz Michael; Herschlag Daniel; Altman Russ B
Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments.
Nature protocols 2008;3(9):1395-401.
2008: Daigle Bernie J; Altman Russ B
M-BISON: microarray-based integration of data sources using networks.
BMC bioinformatics 2008;9():214.
2008: Poulter Graham L; Rubin Daniel L; Altman Russ B; Seoighe Cathal
MScanner: a classifier for retrieving Medline citations.
BMC bioinformatics 2008;9():108.
2008: Glazer Dariya S; Radmer Randall J; Altman Russ B
Combining molecular dynamics and machine learning to improve protein function recognition.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2008;():332-43.
2007: Tang Susan; Liao Jung-Chi; Dunn Alexander R; Altman Russ B; Spudich James A; Schmidt Jeanette P
Predicting allosteric communication in myosin via a pathway of conserved residues.
Journal of molecular biology 2007;373(5):1361-73.
2007: Altman Russ B
Current progress in bioinformatics 2007.
Briefings in bioinformatics 2007;8(5):277-8.
2007: Dugan Jonathan M; Altman Russ B
Using surface envelopes to constrain molecular modeling.
Protein science : a publication of the Protein Society 2007;16(7):1266-73.
2007: Altman Russ B; Benowitz Neal; Gurwitz David; Lunshof Jeantine; Relling Mary; Lamba Jatinder; Wieben Eric; Mooney Sean; Giacomini Kathleen; Weiss Scott; Johnson Julie A; McLeod Howard; Flockhart David; Weinshilboum Richard; Shuldiner Alan R; Roden Dan; Krauss Ronald M; Ratain Mark
Genetic nondiscrimination legislation: a critical prerequisite for pharmacogenomics data sharing.
Pharmacogenomics 2007;8(5):519.
2007: Laederach Alain; Chan Joseph M; Schwartzman Armin; Willgohs Eric; Altman Russ B
Coplanar and coaxial orientations of RNA bases and helices.
RNA (New York, N.Y.) 2007;13(5):643-50.
2007: Laederach Alain; Shcherbakova Inna; Jonikas Magdalena A; Altman Russ B; Brenowitz Michael
Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(17):7045-50.
2007: Altman Russ B
PharmGKB: a logical home for knowledge relating genotype to drug response phenotype.
Nature genetics 2007;39(4):426.
2007: Altman Russ B; Klein Teri E
Biomedical informatics training at Stanford in the 21st century.
Journal of biomedical informatics 2007;40(1):55-8.
2007: Xu Rong; Garten Yael; Supekar Kaustubh S; Das Amar K; Altman Russ B; Garber Alan M
Extracting subject demographic information from abstracts of randomized clinical trial reports.
Studies in health technology and informatics 2007;129(Pt 1):550-4.
2007: Yoon Sungroh; Ebert Jessica C; Chung Eui-Young; De Micheli Giovanni; Altman Russ B
Clustering protein environments for function prediction: finding PROSITE motifs in 3D.
BMC bioinformatics 2007;8 Suppl 4():S10.
2006: Roden Dan M; Altman Russ B; Benowitz Neal L; Flockhart David A; Giacomini Kathleen M; Johnson Julie A; Krauss Ronald M; McLeod Howard L; Ratain Mark J; Relling Mary V; Ring Huijun Z; Shuldiner Alan R; Weinshilboum Richard M; Weiss Scott T;
Pharmacogenomics: challenges and opportunities.
Annals of internal medicine 2006;145(10):749-57.
2006: Lin Zhen; Altman Russ B; Owen Art B
Confidentiality in genome research.
Science (New York, N.Y.) 2006;313(5786):441-2.
2006: Kohane Isaac S; Masys Daniel R; Altman Russ B
The incidentalome: a threat to genomic medicine.
JAMA : the journal of the American Medical Association 2006;296(2):212-5.
2006: Laederach Alain; Shcherbakova Inna; Liang Mike P; Brenowitz Michael; Altman Russ B
Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule.
Journal of molecular biology 2006;358(4):1179-90.
2006: Phuong Tu Minh; Lin Zhen; Altman Russ B
Choosing SNPs using feature selection.
Journal of bioinformatics and computational biology 2006;4(2):241-57.
2006: Leontis Neocles B; Altman Russ B; Berman Helen M; Brenner Steven E; Brown James W; Engelke David R; Harvey Stephen C; Holbrook Stephen R; Jossinet Fabrice; Lewis Suzanna E; Major François; Mathews David H; Richardson Jane S; Williamson James R; Westhof Eric
The RNA Ontology Consortium: an open invitation to the RNA community.
RNA (New York, N.Y.) 2006;12(4):533-41.
2006: Hernandez-Boussard Tina; Klein Teri E; Altman Russ B
Pharmacogenomics: The relevance of emerging genotyping technologies.
MLO: medical laboratory observer 2006;38(3):24, 26-30.
2006: Yeh Iwei; Altman Russ B
Drug Targets for Plasmodium falciparum: a post-genomic review/survey.
Mini reviews in medicinal chemistry 2006;6(2):177-202.
2006: Gurwitz David; Lunshof Jeantine E; Altman Russ B
A call for the creation of personalized medicine databases.
Nature reviews. Drug discovery 2006;5(1):23-6.
2006: Hernandez-Boussard Tina; Woon Mark; Klein Teri E; Altman Russ B
Integrating large-scale genotype and phenotype data.
Omics : a journal of integrative biology 2006;10(4):545-54.
2005: Cannata Nicola; Merelli Emanuela; Altman Russ B
Time to organize the bioinformatics resourceome.
PLoS computational biology 2005;1(7):e76.
2005: Mooney Sean D; Liang Mike Hsin-Ping; DeConde Rob; Altman Russ B
Structural characterization of proteins using residue environments.
Proteins 2005;61(4):741-7.
2005: Kohane Isaac S; Altman Russ B
Health-information altruists--a potentially critical resource.
The New England journal of medicine 2005;353(19):2074-7.
2005: Das Rhiju; Laederach Alain; Pearlman Samuel M; Herschlag Daniel; Altman Russ B
SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments.
RNA (New York, N.Y.) 2005;11(3):344-54.
2005: Peleg Mor; Rubin Daniel; Altman Russ B
Using Petri Net tools to study properties and dynamics of biological systems.
Journal of the American Medical Informatics Association : JAMIA 2005;12(2):181-99.
2005: Rubin Daniel L; Thorn Caroline F; Klein Teri E; Altman Russ B
A statistical approach to scanning the biomedical literature for pharmacogenetics knowledge.
Journal of the American Medical Informatics Association : JAMIA 2005;12(2):121-9.
2005: Wren Jonathan D; Chang Jeffrey T; Pustejovsky James; Adar Eytan; Garner Harold R; Altman Russ B
Biomedical term mapping databases.
Nucleic acids research 2005;33(Database issue):D289-93.
2005: Phuong Tu Minh; Lin Zhen; Altman Russ B
Choosing SNPs using feature selection.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference 2005;():301-9.
2005: Thorn Caroline F; Klein Teri E; Altman Russ B
PharmGKB: the pharmacogenetics and pharmacogenomics knowledge base.
Methods in molecular biology (Clifton, N.J.) 2005;311():179-91.
2004: Lin Zhen; Altman Russ B
Finding haplotype tagging SNPs by use of principal components analysis.
American journal of human genetics 2004;75(5):850-61.
2004: Oliver Diane E; Bhalotia Gaurav; Schwartz Ariel S; Altman Russ B; Hearst Marti A
Tools for loading MEDLINE into a local relational database.
BMC bioinformatics 2004;5():146.
2004: Chang Jeffrey T; Altman Russ B
Extracting and characterizing gene-drug relationships from the literature.
Pharmacogenetics 2004;14(9):577-86.
2004: Lin Zhen; Owen Art B; Altman Russ B
Genetics. Genomic research and human subject privacy.
Science (New York, N.Y.) 2004;305(5681):183.
2004: Yeh Iwei; Hanekamp Theodor; Tsoka Sophia; Karp Peter D; Altman Russ B
Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery.
Genome research 2004;14(5):917-24.
2004: Friedman Charles P; Altman Russ B; Kohane Isaac S; McCormick Kathleen A; Miller Perry L; Ozbolt Judy G; Shortliffe Edward H; Stormo Gary D; Szczepaniak M Cleat; Tuck David; Williamson Jeffrey;
Training the next generation of informaticians: the impact of "BISTI" and bioinformatics--a report from the American College of Medical Informatics.
Journal of the American Medical Informatics Association : JAMIA 2004;11(3):167-72.
2004: Altman Russ B
Building successful biological databases.
Briefings in bioinformatics 2004;5(1):4-5.
2004: Liu Yueyi; Liu X Shirley; Wei Liping; Altman Russ B; Batzoglou Serafim
Eukaryotic regulatory element conservation analysis and identification using comparative genomics.
Genome research 2004;14(3):451-8.
2004: Chang Jeffrey T; Schütze Hinrich; Altman Russ B
GAPSCORE: finding gene and protein names one word at a time.
Bioinformatics (Oxford, England) 2004;20(2):216-25.
2004: Dugan Jonathan M; Altman Russ B
Using surface envelopes for discrimination of molecular models.
Protein science : a publication of the Protein Society 2004;13(1):15-24.
2004: Rubin Daniel L; Carrillo Michelle; Woon Mark; Conroy John; Klein Teri E; Altman Russ B
A resource to acquire and summarize pharmacogenetics knowledge in the literature.
Studies in health technology and informatics 2004;107(Pt 2):793-7.
2004: Peleg Mor; Tu Samson; Manindroo Abhijit; Altman Russ B
Modeling and analyzing biomedical processes using workflow/Petri Net models and tools.
Studies in health technology and informatics 2004;107(Pt 1):74-8.
2003: Gabashvili Irene S; Whirl-Carrillo Michelle; Bada Michael; Banatao D Rey; Altman Russ B
Ribosomal dynamics inferred from variations in experimental measurements.
RNA (New York, N.Y.) 2003;9(11):1301-7.
2003: Mooney Sean D; Altman Russ B
MutDB: annotating human variation with functionally relevant data.
Bioinformatics (Oxford, England) 2003;19(14):1858-60.
2003: Liu Shuo; Altman Russ B
Large scale study of protein domain distribution in the context of alternative splicing.
Nucleic acids research 2003;31(16):4828-35.
2003: Raychaudhuri Soumya; Chang Jeffrey T; Imam Farhad; Altman Russ B
The computational analysis of scientific literature to define and recognize gene expression clusters.
Nucleic acids research 2003;31(15):4553-60.
2003: Banatao D Rey; Altman Russ B; Klein Teri E
Microenvironment analysis and identification of magnesium binding sites in RNA.
Nucleic acids research 2003;31(15):4450-60.
2003: Troyanskaya Olga G; Dolinski Kara; Owen Art B; Altman Russ B; Botstein David
A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
Proceedings of the National Academy of Sciences of the United States of America 2003;100(14):8348-53.
2003: Liang Mike P; Banatao D Rey; Klein Teri E; Brutlag Douglas L; Altman Russ B
WebFEATURE: An interactive web tool for identifying and visualizing functional sites on macromolecular structures.
Nucleic acids research 2003;31(13):3324-7.
2003: Khambata-Ford Shirin; Liu Yueyi; Gleason Christopher; Dickson Mark; Altman Russ B; Batzoglou Serafim; Myers Richard M
Identification of promoter regions in the human genome by using a retroviral plasmid library-based functional reporter gene assay.
Genome research 2003;13(7):1765-74.
2003: Altman Russ B
Genetic sequence data for pharmacogenomics.
Current opinion in drug discovery & development 2003;6(3):297-303.
2003: Wei Liping; Altman Russ B
Recognizing complex, asymmetric functional sites in protein structures using a Bayesian scoring function.
Journal of bioinformatics and computational biology 2003;1(1):119-38.
2003: Mooney Sean D; Klein Teri E; Altman Russ B; Trifiro Mark A; Gottlieb Bruce
A functional analysis of disease-associated mutations in the androgen receptor gene.
Nucleic acids research 2003;31(8):e42.
2003: Raychaudhuri Soumya; Altman Russ B
A literature-based method for assessing the functional coherence of a gene group.
Bioinformatics (Oxford, England) 2003;19(3):396-401.
2003: Altman Russ B; Flockhart David A; Sherry Stephen T; Oliver Diane E; Rubin Daniel L; Klein Teri E
Indexing pharmacogenetic knowledge on the World Wide Web.
Pharmacogenetics 2003;13(1):3-5.
2003: Yeh Iwei; Karp Peter D; Noy Natalya F; Altman Russ B
Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO).
Bioinformatics (Oxford, England) 2003;19(2):241-8.
2003: Liu Shuo; Lin Steve; Woon Mark; Klein Teri E; Altman Russ B
A personalized and automated dbSNP surveillance system.
Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference 2003;2():132-6.
2003: Altman Russ B
Complexities of managing biomedical information.
Omics : a journal of integrative biology 2003;7(1):127-9.
2003: Altman Russ B; Dugan Jonathan M
Defining bioinformatics and structural bioinformatics.
Methods of biochemical analysis 2003;44():3-14.
2003: Liang M P; Brutlag D L; Altman R B
Automated construction of structural motifs for predicting functional sites on protein structures.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2003;():204-15.
2002: Troyanskaya Olga G; Garber Mitchell E; Brown Patrick O; Botstein David; Altman Russ B
Nonparametric methods for identifying differentially expressed genes in microarray data.
Bioinformatics (Oxford, England) 2002;18(11):1454-61.
2002: Chang Jeffrey T; Schütze Hinrich; Altman Russ B
Creating an online dictionary of abbreviations from MEDLINE.
Journal of the American Medical Informatics Association : JAMIA 2002;9(6):612-20.
2002: Chang Jeffrey T; Altman Russ B
Promises of text processing: natural language processing meets AI.
Drug discovery today 2002;7(19):992-3.
2002: Raychaudhuri Soumya; Schütze Hinrich; Altman Russ B
Using text analysis to identify functionally coherent gene groups.
Genome research 2002;12(10):1582-90.
2002: Peleg Mor; Yeh Iwei; Altman Russ B
Modelling biological processes using workflow and Petri Net models.
Bioinformatics (Oxford, England) 2002;18(6):825-37.
2002: Kivi Mårten; Liu Xuemin; Raychaudhuri Soumya; Altman Russ B; Small Peter M
Determining the genomic locations of repetitive DNA sequences with a whole-genome microarray: IS6110 in Mycobacterium tuberculosis.
Journal of clinical microbiology 2002;40(6):2192-8.
2002: Whirl-Carrillo Michelle; Gabashvili Irene S; Bada Michael; Banatao D Rey; Altman Russ B
Mining biochemical information: lessons taught by the ribosome.
RNA (New York, N.Y.) 2002;8(3):279-89.
2002: Raychaudhuri Soumya; Chang Jeffrey T; Sutphin Patrick D; Altman Russ B
Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.
Genome research 2002;12(1):203-14.
2002: Hewett Micheal; Oliver Diane E; Rubin Daniel L; Easton Katrina L; Stuart Joshua M; Altman Russ B; Klein Teri E
PharmGKB: the Pharmacogenetics Knowledge Base.
Nucleic acids research 2002;30(1):163-5.
2002: Lin Zhen; Hewett Michael; Altman Russ B
Using binning to maintain confidentiality of medical data.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():454-8.
2002: Rubin Daniel L; Shafa Farhad; Oliver Diane E; Hewett Micheal; Altman Russ B
Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S207-15.
2002: Rubin Daniel L; Hewett Micheal; Oliver Diane E; Klein Teri E; Altman Russ B
Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():88-99.
2002: Oliver Diane E; Rubin Daniel L; Stuart Joshua M; Hewett Micheal; Klein Teri E; Altman Russ B
Ontology development for a pharmacogenetics knowledge base.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():65-76.
2002: Altman Russ B; Klein Teri E
Challenges for biomedical informatics and pharmacogenomics.
Annual review of pharmacology and toxicology 2002;42():113-33.
2001: Garber M E; Troyanskaya O G; Schluens K; Petersen S; Thaesler Z; Pacyna-Gengelbach M; van de Rijn M; Rosen G D; Perou C M; Whyte R I; Altman R B; Brown P O; Botstein D; Petersen I
Diversity of gene expression in adenocarcinoma of the lung.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(24):13784-9.
2001: Troyanskaya O; Cantor M; Sherlock G; Brown P; Hastie T; Tibshirani R; Botstein D; Altman R B
Missing value estimation methods for DNA microarrays.
Bioinformatics (Oxford, England) 2001;17(6):520-5.
2001: Raychaudhuri S; Sutphin P D; Chang J T; Altman R B
Basic microarray analysis: grouping and feature reduction.
Trends in biotechnology 2001;19(5):189-93.
2001: Klein T E; Chang J T; Cho M K; Easton K L; Fergerson R; Hewett M; Lin Z; Liu Y; Liu S; Oliver D E; Rubin D L; Shafa F; Stuart J M; Altman R B
Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base.
The pharmacogenomics journal 2001;1(3):167-70.
2001: Williams G A; Dugan J M; Altman R B
Constrained global optimization for estimating molecular structure from atomic distances.
Journal of computational biology : a journal of computational molecular cell biology 2001;8(5):523-47.
2001: Chang J T; Raychaudhuri S; Altman R B
Including biological literature improves homology search.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():374-83.
2001: Waugh A; Williams G A; Wei L; Altman R B
Using meta computing tools to facilitate large-scale analyses of biological databases.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():360-71.
2001: Banatao D R; Huang C C; Babbitt P C; Altman R B; Klein T E
ViewFeature: integrated feature analysis and visualization.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():240-50.
2000: Altman R B
The interactions between clinical informatics and bioinformatics: a case study.
Journal of the American Medical Informatics Association : JAMIA 2000;7(5):439-43.
2000: Raychaudhuri S; Stuart J M; Liu X; Small P M; Altman R B
Pattern recognition of genomic features with microarrays: site typing of Mycobacterium tuberculosis strains.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 2000;8():286-95.
2000: Raychaudhuri S; Stuart J M; Altman R B
Principal components analysis to summarize microarray experiments: application to sporulation time series.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000;():455-66.
2000: Pulavarthi P; Chiang R; Altman R B
Generating interactive molecular documentaries using a library of graphical actions.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000;():266-77.
2000: Bada M A; Altman R B
Computational modeling of structural experimental data.
Methods in enzymology 2000;317():470-91.
1999: Chen R O; Altman R B
Automated diagnosis of data-model conflicts using metadata.
Journal of the American Medical Informatics Association : JAMIA 1999;6(5):374-92.
1999: Wei L; Huang E S; Altman R B
Are predicted structures good enough to preserve functional sites?
Structure (London, England : 1993) 1999;7(6):643-50.
1999: Chen C C; Singh J P; Altman R B
Using imperfect secondary structure predictions to improve molecular structure computations.
Bioinformatics (Oxford, England) 1999;15(1):53-65.
1998: Hon L; Abernethy N F; Brusic V; Chai J; Altman R B
MHCWeb: converting a WWW database into a knowledge-based collaborative environment.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():947-51.
1998: Liu X; Altman R B
Updating a bibliography using the related articles function within PubMed.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():750-4.
1998: Altman R B
Bioinformatics in support of molecular medicine.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():53-61.
1998: Schmidt J P; Chen C C; Cooper J L; Altman R B
A surface measure for probabilistic structural computations.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1998;6():148-56.
1998: Chen C C; Singh J P; Altman R B
Hierarchical organization of molecular structure computations.
Journal of computational biology : a journal of computational molecular cell biology 1998;5(3):409-22.
1998: Wei L; Altman R B
Recognizing protein binding sites using statistical descriptions of their 3D environments.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():497-508.
1997: Felciano R M; Chen R O; Altman R B
RNA secondary structure as a reusable interface to biological information resources.
Gene 1997;190(2):GC59-70.
1997: Altman R B
Informatics in the care of patients: ten notable challenges.
The Western journal of medicine 1997;166(2):118-22.
1997: Schmidt R; Gerstein M; Altman R B
LPFC: an Internet library of protein family core structures.
Protein science : a publication of the Protein Society 1997;6(1):246-8.
1997: Wei L; Altman R B; Chang J T
Using the radial distributions of physical features to compare amino acid environments and align amino acid sequences.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1997;():465-76.
1997: Chen R O; Felciano R; Altman R B
RIBOWEB: linking structural computations to a knowledge base of published experimental data.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():84-7.
1997: Altman R B; Abernethy N F; Chen R O
Standardized representations of the literature: combining diverse sources of ribosomal data.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():15-24.
1996: Fink D L; Chen R O; Noller H F; Altman R B
Computational methods for defining the allowed conformational space of 16S rRNA based on chemical footprinting data.
RNA (New York, N.Y.) 1996;2(9):851-66.
1996: Chen C C; Chen R O; Altman R B
Constraining volume by matching the moments of a distance distribution.
Computer applications in the biosciences : CABIOS 1996;12(4):319-26.
1996: Altman R B; Merino J E
Images in clinical medicine. Knotted umbilical cord.
The New England journal of medicine 1996;334(9):573.
1996: Bagley S C; Altman R B
Conserved features in the active site of nonhomologous serine proteases.
Folding & design 1996;1(5):371-9.
1996: Felciano R M; Altman R B
Lamprey: tracking users on the World Wide Web.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():757-61.
1995: Gerstein M; Altman R B
Using a measure of structural variation to define a core for the globins.
Computer applications in the biosciences : CABIOS 1995;11(6):633-44.
1995: Gerstein M; Altman R B
Average core structures and variability measures for protein families: application to the immunoglobulins.
Journal of molecular biology 1995;251(1):161-75.
1995: Altman R B; Hughes C; Gerstein M B
Methods for displaying macromolecular structural uncertainty: application to the globins.
Journal of molecular graphics 1995;13(3):142-52, 109-2.
1995: Bagley S C; Altman R B
Characterizing the microenvironment surrounding protein sites.
Protein science : a publication of the Protein Society 1995;4(4):622-35.
1995: Bagley S C; Wei L; Cheng C; Altman R B
Characterizing oriented protein structural sites using biochemical properties.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():12-20.
1994: Altman R B; Tombropoulos R
Probabilistic constraint satisfaction: application to radiosurgery.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():780-4.
1994: Oliver D E; Altman R B
Extraction of SNOMED concepts from medical record texts.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():179-83.
1994: Altman R B; Gerstein M
Finding an average core structure: application to the globins.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():19-27.
1994: Altman R B; Weiser B; Noller H F
Constraint satisfaction techniques for modeling large complexes: application to the central domain of 16S ribosomal RNA.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():10-8.
1993: Altman R B; Brinkley J F
Probabilistic constraint satisfaction with structural models: application to organ modeling by radial contours.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():492-6.
1993: Altman R B
Probabilistic structure calculations: a three-dimensional tRNA structure from sequence correlation data.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1993;1():12-20.
1990: Arrowsmith C H; Pachter R; Altman R B; Iyer S B; Jardetzky O
Sequence-specific 1H NMR assignments and secondary structure in solution of Escherichia coli trp repressor.
Biochemistry 1990;29(27):6332-41.
1989: Altman R B; Jardetzky O
Heuristic refinement method for determination of solution structure of proteins from nuclear magnetic resonance data.
Methods in enzymology 1989;177():218-46.
1988: Brinkley J F; Altman R B; Duncan B S; Buchanan B G; Jardetzky O
Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562.
Journal of chemical information and computer sciences 1988;28(4):194-210.
1986: Altman R B; Jardetzky O
New strategies for the determination of macromolecular structure in solution.
Journal of biochemistry 1986;100(6):1403-23.

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