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Prescott Deininger

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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TOP 3
Comeaux Matthew S; Roy-Engel Astrid M; Hedges Dale J; Deininger Prescott L
Diverse cis factors controlling Alu retrotransposition: what causes Alu elements to die?
Bochukova Elena G; Roscioli Tony; Hedges Dale J; Taylor Indira B; Johnson David; David David J; Deininger Prescott L; Wilkie Andrew O M
Rare mutations of FGFR2 causing apert syndrome: identification of the first partial gene deletion, and an Alu element insertion from a new subfamily.
Wallace Nicholas A; Belancio Victoria P; Deininger Prescott L
L1 mobile element expression causes multiple types of toxicity.

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All Publications

2009: Comeaux Matthew S; Roy-Engel Astrid M; Hedges Dale J; Deininger Prescott L
Diverse cis factors controlling Alu retrotransposition: what causes Alu elements to die?
Genome research 2009;19(4):545-55.
2009: Bochukova Elena G; Roscioli Tony; Hedges Dale J; Taylor Indira B; Johnson David; David David J; Deininger Prescott L; Wilkie Andrew O M
Rare mutations of FGFR2 causing apert syndrome: identification of the first partial gene deletion, and an Alu element insertion from a new subfamily.
Human mutation 2009;30(2):204-11.
2008: Wallace Nicholas A; Belancio Victoria P; Deininger Prescott L
L1 mobile element expression causes multiple types of toxicity.
Gene 2008;419(1-2):75-81.
2008: Wallace Nicholas; Wagstaff Bradley J; Deininger Prescott L; Roy-Engel Astrid M
LINE-1 ORF1 protein enhances Alu SINE retrotransposition.
Gene 2008;419(1-2):1-6.
2008: Gasior Stephen L; Roy-Engel Astrid M; Deininger Prescott L
ERCC1/XPF limits L1 retrotransposition.
DNA repair 2008;7(6):983-9.
2008: Belancio V P; Roy-Engel A M; Deininger P
The impact of multiple splice sites in human L1 elements.
Gene 2008;411(1-2):38-45.
2008: Belancio Victoria P; Hedges Dale J; Deininger Prescott
Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health.
Genome research 2008;18(3):343-58.
2007: Gasior Stephen L; Preston Graeme; Hedges Dale J; Gilbert Nicolas; Moran John V; Deininger Prescott L
Characterization of pre-insertion loci of de novo L1 insertions.
Gene 2007;390(1-2):190-8.
2007: Batzer Mark A; Deininger Prescott L; Jurka Jerzy; Moran John V
Introduction for the Gene special issue dedicated to the meeting "Genomic impact of eukaryotic transposable elements" at Asilomar.
Gene 2007;390(1-2):1-2.
2007: Belancio Victoria P; Whelton Megan; Deininger Prescott
Requirements for polyadenylation at the 3' end of LINE-1 elements.
Gene 2007;390(1-2):98-107.
2007: Lentz Jennifer; Pan Fuming; Ng San San; Deininger Prescott; Keats Bronya
Ush1c216A knock-in mouse survives Katrina.
Mutation research 2007;616(1-2):139-44.
2007: Hedges D J; Deininger P L
Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity.
Mutation research 2007;616(1-2):46-59.
2007: Shen Jie; Deininger Prescott; Hunt Jay D; Zhao Hua
8-Hydroxy-2'-deoxyguanosine (8-OH-dG) as a potential survival biomarker in patients with nonsmall-cell lung cancer.
Cancer 2007;109(3):574-80.
2007: Zhao Hua; Shen Jie; Deininger Prescott; Hunt Jay D
Abasic sites and survival in resected patients with non-small cell lung cancer.
Cancer letters 2007;246(1-2):47-53.
2006: Xing Jinchuan; Wang Hui; Belancio Victoria P; Cordaux Richard; Deininger Prescott L; Batzer Mark A
Emergence of primate genes by retrotransposon-mediated sequence transduction.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(47):17608-13.
2006: Shen Jie; Deininger Prescott L; Zhao Hua
Applications of computational algorithm tools to identify functional SNPs in cytokine genes.
Cytokine 2006;35(1-2):62-6.
2006: Gasior Stephen L; Wakeman Timothy P; Xu Bo; Deininger Prescott L
The human LINE-1 retrotransposon creates DNA double-strand breaks.
Journal of molecular biology 2006;357(5):1383-93.
2006: Battilana Jaqueline; Fagundes Nelson J R; Heller Ana H; Goldani Angela; Freitas Loreta B; Tarazona-Santos Eduardo; Munkhbat Batmunkh; Munkhtuvshin Namid; Krylov Mlu; Benevolenskaia Lidia; Arnett Frank C; Batzer Mark A; Deininger Prescott L; Salzano Francisco M; Bonatto Sandro L
Alu insertion polymorphisms in Native Americans and related Asian populations.
Annals of human biology 2006;33(2):142-60.
2006: Gasior Stephen L; Palmisano Melanie; Deininger Prescott L
Alu-linked hairpins efficiently mediate RNA interference with less toxicity than do H1-expressed short hairpin RNAs.
Analytical biochemistry 2006;349(1):41-8.
2006: Belancio Victoria P; Hedges Dale J; Deininger Prescott
LINE-1 RNA splicing and influences on mammalian gene expression.
Nucleic acids research 2006;34(5):1512-21.
2005: El-Sawy Mohammed; Kale Shubha P; Dugan Christine; Nguyen Thuc Quyen; Belancio Victoria; Bruch Heather; Roy-Engel Astrid M; Deininger Prescott L
Nickel stimulates L1 retrotransposition by a post-transcriptional mechanism.
Journal of molecular biology 2005;354(2):246-57.
2005: Fagundes N J R; Salzano F M; Batzer M A; Deininger P L; Bonatto S L
Worldwide genetic variation at the 3'-UTR region of the LDLR gene: possible influence of natural selection.
Annals of human genetics 2005;69(Pt 4):389-400.
2005: Kale Shubha P; Moore Lakisha; Deininger Prescott L; Roy-Engel Astrid M
Heavy metals stimulate human LINE-1 retrotransposition.
International journal of environmental research and public health 2005;2(1):14-23.
2005: Lentz Jennifer; Savas Sevtap; Ng San-San; Athas Grace; Deininger Prescott; Keats Bronya
The USH1C 216G-->A splice-site mutation results in a 35-base-pair deletion.
Human genetics 2005;116(3):225-7.
2005: Roy-Engel A M; El-Sawy M; Farooq L; Odom G L; Perepelitsa-Belancio V; Bruch H; Oyeniran O O; Deininger P L
Human retroelements may introduce intragenic polyadenylation signals.
Cytogenetic and genome research 2005;110(1-4):365-71.
2005: El-Sawy M; Deininger P
Tandem insertions of Alu elements.
Cytogenetic and genome research 2005;108(1-3):58-62.
2004: Odom Guy L; Robichaux Jennifer L; Deininger Prescott L
Predicting mammalian SINE subfamily activity from A-tail length.
Molecular biology and evolution 2004;21(11):2140-8.
2004: Kass David H; Knight Alec; Deininger Prescott L
Evolution of a hypervariable region of the low density lipoprotein receptor (LDLR) gene in humans and other hominoids.
Genetica 2004;121(2):187-93.
2004: Savas Sevtap; Frischhertz Ben; Batzer Mark A; Deininger Prescott L; Keats Bronya J B
Structure, diversity, and evolution of the 45-bp VNTR in intron 5 of the USH1C gene.
Genomics 2004;83(3):439-44.
2003: Deininger Prescott L; Moran John V; Batzer Mark A; Kazazian Haig H
Mobile elements and mammalian genome evolution.
Current opinion in genetics & development 2003;13(6):651-8.
2003: Perepelitsa-Belancio Victoria; Deininger Prescott
RNA truncation by premature polyadenylation attenuates human mobile element activity.
Nature genetics 2003;35(4):363-6.
2003: Puschett Jules B; Whitbred Joy; Ianosi-Irimie Monica; Vu Hop V; Rabon Edd; Robinson James; Deininger Prescott
Molecular effects of volume expansion on the renal sodium phosphate cotransporter.
The American journal of the medical sciences 2003;326(1):1-8.
2003: Johanning Karla; Stevenson Claudina Alemán; Oyeniran Oluwatosin O; Gozal Yair M; Roy-Engel Astrid M; Jurka Jerzy; Deininger Prescott L
Potential for retroposition by old Alu subfamilies.
Journal of molecular evolution 2003;56(6):658-64.
2002: Deininger Prescott L; Batzer Mark A
Mammalian retroelements.
Genome research 2002;12(10):1455-65.
2002: Roy-Engel Astrid M; Salem Abdel-Halim; Oyeniran Oluwatosin O; Deininger Lisa; Hedges Dale J; Kilroy Gail E; Batzer Mark A; Deininger Prescott L
Active Alu element "A-tails": size does matter.
Genome research 2002;12(9):1333-44.
2002: West Neva; Roy-Engel Astrid M; Imataka Hiroaki; Sonenberg Nahum; Deininger Prescott
Shared protein components of SINE RNPs.
Journal of molecular biology 2002;321(3):423-32.
2002: Batzer Mark A; Deininger Prescott L
Alu repeats and human genomic diversity.
Nature reviews. Genetics 2002;3(5):370-9.
2002: Roy-Engel Astrid M; Carroll Marion L; El-Sawy Mohamed; Salem Abdel-Halim; Garber Randall K; Nguyen Son V; Deininger Prescott L; Batzer Mark A
Non-traditional Alu evolution and primate genomic diversity.
Journal of molecular biology 2002;316(5):1033-40.
2002: Kurima Kiyoto; Peters Linda M; Yang Yandan; Riazuddin Saima; Ahmed Zubair M; Naz Sadaf; Arnaud Deidre; Drury Stacy; Mo Jianhong; Makishima Tomoko; Ghosh Manju; Menon P S N; Deshmukh Dilip; Oddoux Carole; Ostrer Harry; Khan Shaheen; Riazuddin Sheikh; Deininger Prescott L; Hampton Lori L; Sullivan Susan L; Battey James F; Keats Bronya J B; Wilcox Edward R; Friedman Thomas B; Griffith Andrew J
Dominant and recessive deafness caused by mutations of a novel gene, TMC1, required for cochlear hair-cell function.
Nature genetics 2002;30(3):277-84.
2002: Savas Sevtap; Frischhertz Ben; Pelias Mary Z; Batzer Mark A; Deininger Prescott L; Keats Bronya B
The USH1C 216G-->A mutation and the 9-repeat VNTR(t,t) allele are in complete linkage disequilibrium in the Acadian population.
Human genetics 2002;110(1):95-7.
2001: Roy-Engel A M; Carroll M L; Vogel E; Garber R K; Nguyen S V; Salem A H; Batzer M A; Deininger P L
Alu insertion polymorphisms for the study of human genomic diversity.
Genetics 2001;159(1):279-90.
2001: Carroll M L; Roy-Engel A M; Nguyen S V; Salem A H; Vogel E; Vincent B; Myers J; Ahmad Z; Nguyen L; Sammarco M; Watkins W S; Henke J; Makalowski W; Jorde L B; Deininger P L; Batzer M A
Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity.
Journal of molecular biology 2001;311(1):17-40.
2001: Justice C M; Den Z; Nguyen S V; Stoneking M; Deininger P L; Batzer M A; Keats B J
Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat.
Journal of molecular evolution 2001;52(3):232-8.
2000: Alemán C; Roy-Engel A M; Shaikh T H; Deininger P L
Cis-acting influences on Alu RNA levels.
Nucleic acids research 2000;28(23):4755-61.
2000: Roy A M; Carroll M L; Nguyen S V; Salem A H; Oldridge M; Wilkie A O; Batzer M A; Deininger P L
Potential gene conversion and source genes for recently integrated Alu elements.
Genome research 2000;10(10):1485-95.
2000: Roy A M; West N C; Rao A; Adhikari P; Alemán C; Barnes A P; Deininger P L
Upstream flanking sequences and transcription of SINEs.
Journal of molecular biology 2000;302(1):17-25.
2000: Chen C; Parker M S; Barnes A P; Deininger P; Bobbin R P
Functional expression of three P2X(2) receptor splice variants from guinea pig cochlea.
Journal of neurophysiology 2000;83(3):1502-9.
1999: Deininger P L; Batzer M A
Alu repeats and human disease.
Molecular genetics and metabolism 1999;67(3):183-93.
1999: Roy A M; Carroll M L; Kass D H; Nguyen S V; Salem A H; Batzer M A; Deininger P L
Recently integrated human Alu repeats: finding needles in the haystack.
Genetica 1999;107(1-3):149-61.
1998: Viñas A M; Drury S S; DeAngelis M M; Den Z; Huang J M; Berlin C I; Hunt J D; Batzer M A; Deininger P L; Keats B J
The mouse deafness locus (dn) is associated with an inversion on chromosome 19.
Biochimica et biophysica acta 1998;1407(3):257-62.
1998: Scott D A; Greinwald J H; Marietta J R; Drury S; Swiderski R E; Viñas A; DeAngelis M M; Carmi R; Ramesh A; Kraft M L; Elbedour K; Skworak A B; Friedman R A; Srikumari Srisailapathy C R; Verhoeven K; Van Gamp G; Lovett M; Deininger P L; Batzer M A; Morton C C; Keats B J; Smith R J; Sheffield V C
Identification and mutation analysis of a cochlear-expressed, zinc finger protein gene at the DFNB7/11 and dn hearing-loss loci on human chromosome 9q and mouse chromosome 19.
Gene 1998;215(2):461-9.
1998: DeAngelis M M; Doucet J P; Drury S; Sherry S T; Robichaux M B; Den Z; Pelias M Z; Ditta G M; Keats B J; Deininger P L; Batzer M A
Assembly of a high-resolution map of the Acadian Usher syndrome region and localization of the nuclear EF-hand acidic gene.
Biochimica et biophysica acta 1998;1407(1):84-91.
1998: Roy A M; Gong C; Kass D H; Deininger P L
Recent B2 element insertions in the mouse genome.
DNA sequence : the journal of DNA sequencing and mapping 1998;8(5):343-8.
1997: Stoneking M; Fontius J J; Clifford S L; Soodyall H; Arcot S S; Saha N; Jenkins T; Tahir M A; Deininger P L; Batzer M A
Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa.
Genome research 1997;7(11):1061-71.
1997: Arcot S S; DeAngelis M M; Sherry S T; Adamson A W; Lamerdin J E; Deininger P L; Carrano A V; Batzer M A
Identification and characterization of two polymorphic Ya5 Alu repeats.
Mutation research 1997;382(1-2):5-11.
1997: Limprasert P; Nouri N; Nopparatana C; Deininger P L; Keats B J
Comparative studies of the CAG repeats in the spinocerebellar ataxia type 1 (SCA1) gene.
American journal of medical genetics 1997;74(5):488-93.
1997: Shaikh T H; Roy A M; Kim J; Batzer M A; Deininger P L
cDNAs derived from primary and small cytoplasmic Alu (scAlu) transcripts.
Journal of molecular biology 1997;271(2):222-34.
1997: Batzer M A; Sherry S T; Deininger P L; Stoneking M
Alu repeats and human evolution. Response.
Journal of molecular evolution 1997;45(1):7-8.
1997: Shen M R; Brosius J; Deininger P L
BC1 RNA, the transcript from a master gene for ID element amplification, is able to prime its own reverse transcription.
Nucleic acids research 1997;25(8):1641-8.
1997: Kass D H; Kim J; Rao A; Deininger P L
Evolution of B2 repeats: the muroid explosion.
Genetica 1997;99(1):1-13.
1996: Kim J; Deininger P L
Recent amplification of rat ID sequences.
Journal of molecular biology 1996;261(3):322-7.
1996: Knight A; Batzer M A; Stoneking M; Tiwari H K; Scheer W D; Herrera R J; Deininger P L
DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(9):4360-4.
1996: Limprasert P; Nouri N; Heyman R A; Nopparatana C; Kamonsilp M; Deininger P L; Keats B J
Analysis of CAG repeat of the Machado-Joseph gene in human, chimpanzee and monkey populations: a variant nucleotide is associated with the number of CAG repeats.
Human molecular genetics 1996;5(2):207-13.
1996: Kass D H; Kim J; Deininger P L
Sporadic amplification of ID elements in rodents.
Journal of molecular evolution 1996;42(1):7-14.
1996: Batzer M A; Deininger P L; Hellmann-Blumberg U; Jurka J; Labuda D; Rubin C M; Schmid C W; Zietkiewicz E; Zuckerkandl E
Standardized nomenclature for Alu repeats.
Journal of molecular evolution 1996;42(1):3-6.
1996: Batzer M A; Arcot S S; Phinney J W; Alegria-Hartman M; Kass D H; Milligan S M; Kimpton C; Gill P; Hochmeister M; Ioannou P A; Herrera R J; Boudreau D A; Scheer W D; Keats B J; Deininger P L; Stoneking M
Genetic variation of recent Alu insertions in human populations.
Journal of molecular evolution 1996;42(1):22-9.
1996: Shaikh T H; Deininger P L
The role and amplification of the HS Alu subfamily founder gene.
Journal of molecular evolution 1996;42(1):15-21.
1996: Deininger P L; Tiedge H; Kim J; Brosius J
Evolution, expression, and possible function of a master gene for amplification of an interspersed repeated DNA family in rodents.
Progress in nucleic acid research and molecular biology 1996;52():67-88.
1995: Arcot S S; Shaikh T H; Kim J; Bennett L; Alegria-Hartman M; Nelson D O; Deininger P L; Batzer M A
Sequence diversity and chromosomal distribution of "young" Alu repeats.
Gene 1995;163(2):273-8.
1995: Arcot S S; Wang Z; Weber J L; Deininger P L; Batzer M A
Alu repeats: a source for the genesis of primate microsatellites.
Genomics 1995;29(1):136-44.
1995: Arcot S S; Fontius J J; Deininger P L; Batzer M A
Identification and analysis of a 'young' polymorphic Alu element.
Biochimica et biophysica acta 1995;1263(1):99-102.
1995: Kim J; Kass D H; Deininger P L
Transcription and processing of the rodent ID repeat family in germline and somatic cells.
Nucleic acids research 1995;23(12):2245-51.
1995: Kass D H; Batzer M A; Deininger P L
A new restriction-site polymorphism in exon 18 of the low density lipoprotein receptor (LDLR) gene.
Human genetics 1995;95(3):363-4.
1995: Batzer M A; Rubin C M; Hellmann-Blumberg U; Alegria-Hartman M; Leeflang E P; Stern J D; Bazan H A; Shaikh T H; Deininger P L; Schmid C W
Dispersion and insertion polymorphism in two small subfamilies of recently amplified human Alu repeats.
Journal of molecular biology 1995;247(3):418-27.
1995: Kass D H; Batzer M A; Deininger P L
Gene conversion as a secondary mechanism of short interspersed element (SINE) evolution.
Molecular and cellular biology 1995;15(1):19-25.
1994: Kim J; Martignetti J A; Shen M R; Brosius J; Deininger P
Rodent BC1 RNA gene as a master gene for ID element amplification.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(9):3607-11.
1994: Keats B J; Nouri N; Pelias M Z; Deininger P L; Litt M
Tightly linked flanking microsatellite markers for the Usher syndrome type I locus on the short arm of chromosome 11.
American journal of human genetics 1994;54(4):681-6.
1994: Batzer M A; Alegria-Hartman M; Deininger P L
A consensus Alu repeat probe for physical mapping.
Genetic analysis, techniques and applications 1994;11(2):34-8.
1994: Kass D H; Aleman C; Batzer M A; Deininger P L
Identification of a human specific Alu insertion in the factor XIIIB gene.
Genetica 1994;94(1):1-8.
1993: Deininger P
Induction of DNA rearrangement and transposition.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(9):3780-1.
1992: Shen M R; Deininger P L
An in vivo assay for measuring the recombination potential between DNA sequences in mammalian cells.
Analytical biochemistry 1992;205(1):83-9.
1992: Batzer M A; Bazan H A; Kim J; Morrow S L; Shaikh T H; Arcot S S; Deininger P L
Large-scale subcloning of bacteriophage lambda ZAP clones.
BioTechniques 1992;12(3):370-1.
1992: Arcot S S; Deininger P L
Protein binding sites within the human thymidine kinase promoter.
Gene 1992;111(2):249-54.
1991: Shen M R; Batzer M A; Deininger P L
Evolution of the master Alu gene(s).
Journal of molecular evolution 1991;33(4):311-20.
1991: Batzer M A; Carlton J E; Deininger P L
Enhanced evolutionary PCR using oligonucleotides with inosine at the 3'-terminus.
Nucleic acids research 1991;19(18):5081.
1991: Batzer M A; Gudi V A; Mena J C; Foltz D W; Herrera R J; Deininger P L
Amplification dynamics of human-specific (HS) Alu family members.
Nucleic acids research 1991;19(13):3619-23.
1991: Batzer M A; Deininger P L
A human-specific subfamily of Alu sequences.
Genomics 1991;9(3):481-7.
1991: Arcot S S; Traina-Dorge V L; Deininger P L
The rat thymidine kinase gene 5' region: evolution of a promoter.
DNA sequence : the journal of DNA sequencing and mapping 1991;2(2):129-31.
1990: Batzer M A; Kilroy G E; Richard P E; Shaikh T H; Desselle T D; Hoppens C L; Deininger P L
Structure and variability of recently inserted Alu family members.
Nucleic acids research 1990;18(23):6793-8.
1989: Slagel V K; Deininger P L
In vivo transcription of a cloned prosimian primate SINE sequence.
Nucleic acids research 1989;17(21):8669-82.
1989: Arcot S S; Flemington E K; Deininger P L
The human thymidine kinase gene promoter. Deletion analysis and specific protein binding.
The Journal of biological chemistry 1989;264(4):2343-9.
1988: Deininger P L; Slagel V K
Recently amplified Alu family members share a common parental Alu sequence.
Molecular and cellular biology 1988;8(10):4566-9.
1987: Slagel V; Flemington E; Traina-Dorge V; Bradshaw H; Deininger P
Clustering and subfamily relationships of the Alu family in the human genome.
Molecular biology and evolution 1987;4(1):19-29.
1987: Flemington E; Bradshaw H D; Traina-Dorge V; Slagel V; Deininger P L
Sequence, structure and promoter characterization of the human thymidine kinase gene.
Gene 1987;52(2-3):267-77.
1987: Macklin W B; Campagnoni C W; Deininger P L; Gardinier M V
Structure and expression of the mouse myelin proteolipid protein gene.
Journal of neuroscience research 1987;18(3):383-94.
1986: Gardinier M V; Macklin W B; Diniak A J; Deininger P L
Characterization of myelin proteolipid mRNAs in normal and jimpy mice.
Molecular and cellular biology 1986;6(11):3755-62.
1985: Heller M; Flemington E; Kieff E; Deininger P
Repeat arrays in cellular DNA related to the Epstein-Barr virus IR3 repeat.
Molecular and cellular biology 1985;5(3):457-65.
1984: Bradshaw H D; Deininger P L
Human thymidine kinase gene: molecular cloning and nucleotide sequence of a cDNA expressible in mammalian cells.
Molecular and cellular biology 1984;4(11):2316-20.

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