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Rudolf Amann

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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TOP 3
Schattenhofer Martha; Fuchs Bernhard M; Amann Rudolf; Zubkov Mikhail V; Tarran Glen A; Pernthaler Jakob
Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.
Jogler Christian; Lin Wei; Meyerdierks Anke; Kube Michael; Katzmann Emanuel; Flies Christine; Pan Yongxin; Amann Rudolf; Reinhardt Richard; Schüler Dirk
Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments.
Strittmatter Axel W; Liesegang Heiko; Rabus Ralf; Decker Iwona; Amann Judith; Andres Sönke; Henne Anke; Fricke Wolfgang Florian; Martinez-Arias Rosa; Bartels Daniela; Goesmann Alexander; Krause Lutz; Pühler Alfred; Klenk Hans-Peter; Richter Michael; Schüler Margarete; Glöckner Frank Oliver; Meyerdierks Anke; Gottschalk Gerhard; Amann Rudolf
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.

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All Publications

2009: Schattenhofer Martha; Fuchs Bernhard M; Amann Rudolf; Zubkov Mikhail V; Tarran Glen A; Pernthaler Jakob
Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.
Environmental microbiology 2009;11(8):2078-93.
2009: Jogler Christian; Lin Wei; Meyerdierks Anke; Kube Michael; Katzmann Emanuel; Flies Christine; Pan Yongxin; Amann Rudolf; Reinhardt Richard; Schüler Dirk
Toward cloning of the magnetotactic metagenome: identification of magnetosome island gene clusters in uncultivated magnetotactic bacteria from different aquatic sediments.
Applied and environmental microbiology 2009;75(12):3972-9.
2009: Strittmatter Axel W; Liesegang Heiko; Rabus Ralf; Decker Iwona; Amann Judith; Andres Sönke; Henne Anke; Fricke Wolfgang Florian; Martinez-Arias Rosa; Bartels Daniela; Goesmann Alexander; Krause Lutz; Pühler Alfred; Klenk Hans-Peter; Richter Michael; Schüler Margarete; Glöckner Frank Oliver; Meyerdierks Anke; Gottschalk Gerhard; Amann Rudolf
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
Environmental microbiology 2009;11(5):1038-55.
2009: Yan Shi; Fuchs Bernhard M; Lenk Sabine; Harder Jens; Wulf Jörg; Jiao Nian-Zhi; Amann Rudolf
Biogeography and phylogeny of the NOR5/OM60 clade of Gammaproteobacteria.
Systematic and applied microbiology 2009;32(2):124-39.
2009: Lam Phyllis; Lavik Gaute; Jensen Marlene M; van de Vossenberg Jack; Schmid Markus; Woebken Dagmar; Gutiérrez Dimitri; Amann Rudolf; Jetten Mike S M; Kuypers Marcel M M
Revising the nitrogen cycle in the Peruvian oxygen minimum zone.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(12):4752-7.
2009: Lavik Gaute; Stührmann Torben; Brüchert Volker; Van der Plas Anja; Mohrholz Volker; Lam Phyllis; Mussmann Marc; Fuchs Bernhard M; Amann Rudolf; Lass Ulrich; Kuypers Marcel M M
Detoxification of sulphidic African shelf waters by blooming chemolithotrophs.
Nature 2009;457(7229):581-4.
2008: Musat Niculina; Halm Hannah; Winterholler Bärbel; Hoppe Peter; Peduzzi Sandro; Hillion Francois; Horreard Francois; Amann Rudolf; Jørgensen Bo B; Kuypers Marcel M M
A single-cell view on the ecophysiology of anaerobic phototrophic bacteria.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(46):17861-6.
2008: Woebken Dagmar; Lam Phyllis; Kuypers Marcel M M; Naqvi S Wajih A; Kartal Boran; Strous Marc; Jetten Mike S M; Fuchs Bernhard M; Amann Rudolf
A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones.
Environmental microbiology 2008;10(11):3106-19.
2008: Yarza Pablo; Richter Michael; Peplies Jörg; Euzeby Jean; Amann Rudolf; Schleifer Karl-Heinz; Ludwig Wolfgang; Glöckner Frank Oliver; Rosselló-Móra Ramon
The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Systematic and applied microbiology 2008;31(4):241-50.
2008: Amann Rudolf; Fuchs Bernhard M
Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.
Nature reviews. Microbiology 2008;6(5):339-48.
2008: Hieu Cao Xuan; Voigt Birgit; Albrecht Dirk; Becher Dörte; Lombardot Thierry; Glöckner Frank Oliver; Amann Rudolf; Hecker Michael; Schweder Thomas
Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T.
Proteomics 2008;8(8):1608-23.
2007: Woebken Dagmar; Teeling Hanno; Wecker Patricia; Dumitriu Alexandra; Kostadinov Ivaylo; Delong Edward F; Amann Rudolf; Glöckner Frank O
Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.
The ISME journal 2007;1(5):419-35.
2007: Mussmann Marc; Hu Fen Z; Richter Michael; de Beer Dirk; Preisler André; Jørgensen Bo B; Huntemann Marcel; Glöckner Frank Oliver; Amann Rudolf; Koopman Werner J H; Lasken Roger S; Janto Benjamin; Hogg Justin; Stoodley Paul; Boissy Robert; Ehrlich Garth D
Insights into the genome of large sulfur bacteria revealed by analysis of single filaments.
PLoS biology 2007;5(9):e230.
2007: Santos Fernando; Meyerdierks Anke; Peña Arantxa; Rosselló-Mora Ramon; Amann Rudolf; Antón Josefa
Metagenomic approach to the study of halophages: the environmental halophage 1.
Environmental microbiology 2007;9(7):1711-23.
2007: Woebken Dagmar; Fuchs Bernhard M; Kuypers Marcel M M; Amann Rudolf
Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system.
Applied and environmental microbiology 2007;73(14):4648-57.
2007: Musat Niculina; Giere Olav; Gieseke Armin; Thiermann Frank; Amann Rudolf; Dubilier Nicole
Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas.
Environmental microbiology 2007;9(5):1345-53.
2007: Alonso Cecilia; Warnecke Falk; Amann Rudolf; Pernthaler Jakob
High local and global diversity of Flavobacteria in marine plankton.
Environmental microbiology 2007;9(5):1253-66.
2007: Lösekann Tina; Knittel Katrin; Nadalig Thierry; Fuchs Bernhard; Niemann Helge; Boetius Antje; Amann Rudolf
Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea.
Applied and environmental microbiology 2007;73(10):3348-62.
2007: Lam Phyllis; Jensen Marlene M; Lavik Gaute; McGinnis Daniel F; Müller Beat; Schubert Carsten J; Amann Rudolf; Thamdrup Bo; Kuypers Marcel M M
Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(17):7104-9.
2007: Soria-Carrasco Victor; Valens-Vadell Maria; Peña Arantxa; Antón Josefa; Amann Rudolf; Castresana Jose; Rosselló-Mora Ramon
Phylogenetic position of Salinibacter ruber based on concatenated protein alignments.
Systematic and applied microbiology 2007;30(3):171-9.
2007: Fuchs Bernhard M; Spring Stefan; Teeling Hanno; Quast Christian; Wulf Jörg; Schattenhofer Martha; Yan Shi; Ferriera Steve; Johnson Justin; Glöckner Frank Oliver; Amann Rudolf
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(8):2891-6.
2006: Bauer Margarete; Kube Michael; Teeling Hanno; Richter Michael; Lombardot Thierry; Allers Elke; Würdemann Chris A; Quast Christian; Kuhl Heiner; Knaust Florian; Woebken Dagmar; Bischof Kerstin; Mussmann Marc; Choudhuri Jomuna V; Meyer Folker; Reinhardt Richard; Amann Rudolf I; Glöckner Frank Oliver
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.
Environmental microbiology 2006;8(12):2201-13.
2006: MacGregor Barbara J; Amann Rudolf
Single-stranded conformational polymorphism for separation of mixed rRNAS (rRNA-SSCP): a new method for profiling microbial communities.
Systematic and applied microbiology 2006;29(8):661-70.
2006: Niemann Helge; Lösekann Tina; de Beer Dirk; Elvert Marcus; Nadalig Thierry; Knittel Katrin; Amann Rudolf; Sauter Eberhard J; Schlüter Michael; Klages Michael; Foucher Jean Paul; Boetius Antje
Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink.
Nature 2006;443(7113):854-8.
2006: Woyke Tanja; Teeling Hanno; Ivanova Natalia N; Huntemann Marcel; Richter Michael; Gloeckner Frank Oliver; Boffelli Dario; Anderson Iain J; Barry Kerrie W; Shapiro Harris J; Szeto Ernest; Kyrpides Nikos C; Mussmann Marc; Amann Rudolf; Bergin Claudia; Ruehland Caroline; Rubin Edward M; Dubilier Nicole
Symbiosis insights through metagenomic analysis of a microbial consortium.
Nature 2006;443(7114):950-5.
2006: Blazejak Anna; Kuever Jan; Erséus Christer; Amann Rudolf; Dubilier Nicole
Phylogeny of 16S rRNA, ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5'-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (oligochaeta) from Bermuda and the Bahamas.
Applied and environmental microbiology 2006;72(8):5527-36.
2006: MacGregor Barbara J; Boschker Henricus T S; Amann Rudolf
Comparison of rRNA and polar-lipid-derived fatty acid biomarkers for assessment of 13C-substrate incorporation by microorganisms in marine sediments.
Applied and environmental microbiology 2006;72(8):5246-53.
2006: Musat Niculina; Werner Ursula; Knittel Katrin; Kolb Steffen; Dodenhof Tanja; van Beusekom Justus E E; de Beer Dirk; Dubilier Nicole; Amann Rudolf
Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Rømø Basin, Wadden Sea.
Systematic and applied microbiology 2006;29(4):333-48.
2005: Meyerdierks Anke; Kube Michael; Lombardot Thierry; Knittel Katrin; Bauer Margarete; Glöckner Frank Oliver; Reinhardt Richard; Amann Rudolf
Insights into the genomes of archaea mediating the anaerobic oxidation of methane.
Environmental microbiology 2005;7(12):1937-51.
2005: Mussmann Marc; Richter Michael; Lombardot Thierry; Meyerdierks Anke; Kuever Jan; Kube Michael; Glöckner Frank Oliver; Amann Rudolf
Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer.
Journal of bacteriology 2005;187(20):7126-37.
2005: Gade Dörte; Theiss Dorothea; Lange Daniela; Mirgorodskaya Ekaterina; Lombardot Thierry; Glöckner Frank Oliver; Kube Michael; Reinhardt Richard; Amann Rudolf; Lehrach Hans; Rabus Ralf; Gobom Johan
Towards the proteome of the marine bacterium Rhodopirellula baltica: mapping the soluble proteins.
Proteomics 2005;5(14):3654-71.
2005: Gieseke Armin; Nielsen Jeppe Lund; Amann Rudolf; Nielsen Per Halkjaer; de Beer Dirk
In situ substrate conversion and assimilation by nitrifying bacteria in a model biofilm.
Environmental microbiology 2005;7(9):1392-404.
2005: Kube Michael; Beck Alfred; Meyerdierks Anke; Amann Rudolf; Reinhardt Richard; Rabus Ralf
A catabolic gene cluster for anaerobic benzoate degradation in methanotrophic microbial Black Sea mats.
Systematic and applied microbiology 2005;28(4):287-94.
2005: Kuypers Marcel M M; Lavik Gaute; Woebken Dagmar; Schmid Markus; Fuchs Bernhard M; Amann Rudolf; Jørgensen Bo Barker; Jetten Mike S M
Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(18):6478-83.
2005: Peña Arantxa; Valens Maria; Santos Fernando; Buczolits Sandra; Antón Josefa; Kämpfer Peter; Busse Hans-Jürgen; Amann Rudolf; Rosselló-Mora Ramon
Intraspecific comparative analysis of the species Salinibacter ruber.
Extremophiles : life under extreme conditions 2005;9(2):151-61.
2005: Duperron Sébastien; Nadalig Thierry; Caprais Jean-Claude; Sibuet Myriam; Fiala-Médioni Aline; Amann Rudolf; Dubilier Nicole
Dual symbiosis in a Bathymodiolus sp. mussel from a methane seep on the Gabon continental margin (Southeast Atlantic): 16S rRNA phylogeny and distribution of the symbionts in gills.
Applied and environmental microbiology 2005;71(4):1694-700.
2005: Knittel Katrin; Kuever Jan; Meyerdierks Anke; Meinke Ruth; Amann Rudolf; Brinkhoff Thorsten
Thiomicrospira arctica sp. nov. and Thiomicrospira psychrophila sp. nov., psychrophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacteria isolated from marine Arctic sediments.
International journal of systematic and evolutionary microbiology 2005;55(Pt 2):781-6.
2005: Blazejak Anna; Erséus Christer; Amann Rudolf; Dubilier Nicole
Coexistence of bacterial sulfide oxidizers, sulfate reducers, and spirochetes in a gutless worm (Oligochaeta) from the Peru margin.
Applied and environmental microbiology 2005;71(3):1553-61.
2005: Mussmann Marc; Ishii Kousuke; Rabus Ralf; Amann Rudolf
Diversity and vertical distribution of cultured and uncultured Deltaproteobacteria in an intertidal mud flat of the Wadden Sea.
Environmental microbiology 2005;7(3):405-18.
2005: Kämpfer Peter; Schulze Renate; Jäckel Udo; Malik Khursheed A; Amann Rudolf; Spring Stefan
Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge.
International journal of systematic and evolutionary microbiology 2005;55(Pt 1):341-4.
2005: Knittel Katrin; Lösekann Tina; Boetius Antje; Kort Renate; Amann Rudolf
Diversity and distribution of methanotrophic archaea at cold seeps.
Applied and environmental microbiology 2005;71(1):467-79.
2005: Lombardot Thierry; Bauer Margarete; Teeling Hanno; Amann Rudolf; Glöckner Frank Oliver
The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons.
FEMS microbiology letters 2005;242(1):137-45.
2005: Kumar Yadhu; Westram Ralf; Behrens Sebastian; Fuchs Bernhard; Glöckner Frank Oliver; Amann Rudolf; Meier Harald; Ludwig Wolfgang
Graphical representation of ribosomal RNA probe accessibility data using ARB software package.
BMC bioinformatics 2005;6():61.
2004: Ishii Kousuke; Mussmann Marc; MacGregor Barbara J; Amann Rudolf
An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments.
FEMS microbiology ecology 2004;50(3):203-13.
2004: Bauer Margarete; Lombardot Thierry; Teeling Hanno; Ward Naomi L; Amann Rudolf I; Glöckner Frank O
Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum.
Journal of molecular evolution 2004;59(5):571-86.
2004: Sekar Raju; Fuchs Bernhard M; Amann Rudolf; Pernthaler Jakob
Flow sorting of marine bacterioplankton after fluorescence in situ hybridization.
Applied and environmental microbiology 2004;70(10):6210-9.
2004: Peplies Jörg; Glöckner Frank Oliver; Amann Rudolf; Ludwig Wolfgang
Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton.
Systematic and applied microbiology 2004;27(5):573-80.
2004: Behrens Sebastian; Fuchs Bernhard M; Amann Rudolf
The effect of nucleobase-specific fluorescence quenching on in situ hybridization with rRNA-targeted oligonucleotide probes.
Systematic and applied microbiology 2004;27(5):565-72.
2004: Pernthaler Annelie; Amann Rudolf
Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria.
Applied and environmental microbiology 2004;70(9):5426-33.
2004: Teeling Hanno; Meyerdierks Anke; Bauer Margarete; Amann Rudolf; Glöckner Frank Oliver
Application of tetranucleotide frequencies for the assignment of genomic fragments.
Environmental microbiology 2004;6(9):938-47.
2004: Rabus R; Ruepp A; Frickey T; Rattei T; Fartmann B; Stark M; Bauer M; Zibat A; Lombardot T; Becker I; Amann J; Gellner K; Teeling H; Leuschner W D; Glöckner F-O; Lupas A N; Amann R; Klenk H-P
The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments.
Environmental microbiology 2004;6(9):887-902.
2004: Altmann D; Stief P; Amann R; de Beer D
Nitrification in freshwater sediments as influenced by insect larvae: quantification by microsensors and fluorescence in situ hybridization.
Microbial ecology 2004;48(2):145-53.
2004: Peplies Jörg; Lau Stanley Chun Kwan; Pernthaler Jakob; Amann Rudolf; Glöckner Frank Oliver
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.
Environmental microbiology 2004;6(6):638-45.
2004: Gade D; Schlesner H; Glöckner F O; Amann R; Pfeiffer S; Thomm M
Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes.
Microbial ecology 2004;47(3):243-51.
2004: Warnecke Falk; Amann Rudolf; Pernthaler Jakob
Actinobacterial 16S rRNA genes from freshwater habitats cluster in four distinct lineages.
Environmental microbiology 2004;6(3):242-53.
2003: Krüger Martin; Meyerdierks Anke; Glöckner Frank Oliver; Amann Rudolf; Widdel Friedrich; Kube Michael; Reinhardt Richard; Kahnt Jörg; Böcher Reinhard; Thauer Rudolf K; Shima Seigo
A conspicuous nickel protein in microbial mats that oxidize methane anaerobically.
Nature 2003;426(6968):878-81.
2003: Altmann Dörte; Stief Peter; Amann Rudolf; De Beer Dirk; Schramm Andreas
In situ distribution and activity of nitrifying bacteria in freshwater sediment.
Environmental microbiology 2003;5(9):798-803.
2003: Behrens Sebastian; Fuchs Bernhard M; Mueller Florian; Amann Rudolf
Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?
Applied and environmental microbiology 2003;69(8):4935-41.
2003: Glöckner F O; Kube M; Bauer M; Teeling H; Lombardot T; Ludwig W; Gade D; Beck A; Borzym K; Heitmann K; Rabus R; Schlesner H; Amann R; Reinhardt R
Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(14):8298-303.
2003: Mussmann Marc; Schulz Heide N; Strotmann Bettina; Kjaer Thomas; Nielsen Lars P; Rosselló-Mora Ramon A; Amann Rudolf I; Jørgensen Bo Barker
Phylogeny and distribution of nitrate-storing Beggiatoa spp. in coastal marine sediments.
Environmental microbiology 2003;5(6):523-33.
2003: Sekar Raju; Pernthaler Annelie; Pernthaler Jakob; Warnecke Falk; Posch Thomas; Amann Rudolf
An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization.
Applied and environmental microbiology 2003;69(5):2928-35.
2003: Inácio João; Behrens Sebastian; Fuchs Bernhard M; Fonseca Alvaro; Spencer-Martins Isabel; Amann Rudolf
In situ accessibility of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oligonucleotide probes comprising the D1 and D2 domains.
Applied and environmental microbiology 2003;69(5):2899-905.
2003: Pernthaler Jakob; Pernthaler Annelie; Amann Rudolf
Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization.
Applied and environmental microbiology 2003;69(5):2631-7.
2003: Beardsley Christine; Pernthaler Jakob; Wosniok Werner; Amann Rudolf
Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality?
Applied and environmental microbiology 2003;69(5):2624-30.
2003: Gieseke Armin; Bjerrum Lotte; Wagner Michael; Amann Rudolf
Structure and activity of multiple nitrifying bacterial populations co-existing in a biofilm.
Environmental microbiology 2003;5(5):355-69.
2003: Behrens Sebastian; Rühland Caroline; Inácio João; Huber Harald; Fonseca A; Spencer-Martins I; Fuchs Bernhard M; Amann Rudolf
In situ accessibility of small-subunit rRNA of members of the domains Bacteria, Archaea, and Eucarya to Cy3-labeled oligonucleotide probes.
Applied and environmental microbiology 2003;69(3):1748-58.
2003: Peplies Jörg; Glöckner Frank Oliver; Amann Rudolf
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes.
Applied and environmental microbiology 2003;69(3):1397-407.
2003: Zubkov Mikhail V; Fuchs Bernhard M; Tarran Glen A; Burkill Peter H; Amann Rudolf
High rate of uptake of organic nitrogen compounds by Prochlorococcus cyanobacteria as a key to their dominance in oligotrophic oceanic waters.
Applied and environmental microbiology 2003;69(2):1299-304.
2002: Pernthaler Annelie; Pernthaler Jakob; Schattenhofer Martha; Amann Rudolf
Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton.
Applied and environmental microbiology 2002;68(11):5728-36.
2002: Michaelis Walter; Seifert Richard; Nauhaus Katja; Treude Tina; Thiel Volker; Blumenberg Martin; Knittel Katrin; Gieseke Armin; Peterknecht Katharina; Pape Thomas; Boetius Antje; Amann Rudolf; Jørgensen Bo Barker; Widdel Friedrich; Peckmann Jörn; Pimenov Nikolai V; Gulin Maksim B
Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane.
Science (New York, N.Y.) 2002;297(5583):1013-5.
2002: MacGregor Barbara J; Brüchert Volker; Fleischer Swantje; Amann Rudolf
Isolation of small-subunit rRNA for stable isotopic characterization.
Environmental microbiology 2002;4(8):451-64.
2002: Rabus Ralf; Gade Dörte; Helbig Roger; Bauer Margarete; Glöckner Frank Oliver; Kube Michael; Schlesner Heinz; Reinhardt Richard; Amann Rudolf
Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach.
Proteomics 2002;2(6):649-55.
2002: Pernthaler Annelie; Pernthaler Jakob; Amann Rudolf
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria.
Applied and environmental microbiology 2002;68(6):3094-101.
2002: Casamayor Emilio O; Pedrós-Alió Carlos; Muyzer Gerard; Amann Rudolf
Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations.
Applied and environmental microbiology 2002;68(4):1706-14.
2002: Antón Josefa; Oren Aharon; Benlloch Susana; Rodríguez-Valera Francisco; Amann Rudolf; Rosselló-Mora Ramón
Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds.
International journal of systematic and evolutionary microbiology 2002;52(Pt 2):485-91.
2002: Pernthaler Annelie; Preston Christina M; Pernthaler Jakob; DeLong Edward F; Amann Rudolf
Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea.
Applied and environmental microbiology 2002;68(2):661-7.
2002: Amann Rudolf
Think big: the international dimension of environmental microbiology.
Environmental microbiology 2002;4(1):3.
2001: Zubkov M V; Fuchs B M; Burkill P H; Amann R
Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea.
Applied and environmental microbiology 2001;67(11):5210-8.
2001: Eilers H; Pernthaler J; Peplies J; Glöckner F O; Gerdts G; Amann R
Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton.
Applied and environmental microbiology 2001;67(11):5134-42.
2001: Schönhuber W; Le Bourhis G; Tremblay J; Amann R; Kulakauskas S
Utilization of tmRNA sequences for bacterial identification.
BMC microbiology 2001;1():20.
2001: Pernthaler A; Pernthaler J; Eilers H; Amann R
Growth patterns of two marine isolates: adaptations to substrate patchiness?
Applied and environmental microbiology 2001;67(9):4077-83.
2001: West N J; Schönhuber W A; Fuller N J; Amann R I; Rippka R; Post A F; Scanlan D J
Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides.
Microbiology (Reading, England) 2001;147(Pt 7):1731-44.
2001: Amann R; Fuchs B M; Behrens S
The identification of microorganisms by fluorescence in situ hybridisation.
Current opinion in biotechnology 2001;12(3):231-6.
2001: Simek K; Pernthaler J; Weinbauer M G; Hornák K; Dolan J R; Nedoma J; Masín M; Amann R
Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir.
Applied and environmental microbiology 2001;67(6):2723-33.
2001: Zubkov M V; Fuchs B M; Archer S D; Kiene R P; Amann R; Burkill P H
Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea.
Environmental microbiology 2001;3(5):304-11.
2001: Dubilier N; Mülders C; Ferdelman T; de Beer D; Pernthaler A; Klein M; Wagner M; Erséus C; Thiermann F; Krieger J; Giere O; Amann R
Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm.
Nature 2001;411(6835):298-302.
2001: Pernthaler J; Posch T; Simek K; Vrba J; Pernthaler A; Glöckner F O; Nübel U; Psenner R; Amann R
Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture.
Applied and environmental microbiology 2001;67(5):2145-55.
2001: Gieseke A; Purkhold U; Wagner M; Amann R; Schramm A
Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm.
Applied and environmental microbiology 2001;67(3):1351-62.
2001: Fuchs B M; Syutsubo K; Ludwig W; Amann R
In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes.
Applied and environmental microbiology 2001;67(2):961-8.
2001: Ravenschlag K; Sahm K; Amann R
Quantitative molecular analysis of the microbial community in marine arctic sediments (Svalbard).
Applied and environmental microbiology 2001;67(1):387-95.
2001: Schönhuber W; Le Bourhis G; Tremblay J; Amann R; Kulakauskas S
Utilization of tmRNA sequences for bacterial identification.
BMC microbiology 2001;1():20.
2000: Schramm A; De Beer D; Gieseke A; Amann R
Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm.
Environmental microbiology 2000;2(6):680-6.
2000: Amann G; Stetter K O; Llobet-Brossa E; Amann R; Antón J
Direct proof for the presence and expression of two 5% different 16S rRNA genes in individual cells of Haloarcula marismortui.
Extremophiles : life under extreme conditions 2000;4(6):373-6.
2000: Glöckner F O; Zaichikov E; Belkova N; Denissova L; Pernthaler J; Pernthaler A; Amann R
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria.
Applied and environmental microbiology 2000;66(11):5053-65.
2000: Eilers H; Pernthaler J; Amann R
Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts.
Applied and environmental microbiology 2000;66(11):4634-40.
2000: Boetius A; Ravenschlag K; Schubert C J; Rickert D; Widdel F; Gieseke A; Amann R; Jørgensen B B; Witte U; Pfannkuche O
A marine microbial consortium apparently mediating anaerobic oxidation of methane.
Nature 2000;407(6804):623-6.
2000: Fuchs B M; Glöckner F O; Wulf J; Amann R
Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes.
Applied and environmental microbiology 2000;66(8):3603-7.
2000: Ravenschlag K; Sahm K; Knoblauch C; Jørgensen B B; Amann R
Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine arctic sediments.
Applied and environmental microbiology 2000;66(8):3592-602.
2000: Antón J; Rosselló-Mora R; Rodríguez-Valera F; Amann R
Extremely halophilic bacteria in crystallizer ponds from solar salterns.
Applied and environmental microbiology 2000;66(7):3052-7.
2000: Eilers H; Pernthaler J; Glöckner F O; Amann R
Culturability and In situ abundance of pelagic bacteria from the North Sea.
Applied and environmental microbiology 2000;66(7):3044-51.
2000: Thamdrup B; Rosselló-Mora R; Amann R
Microbial manganese and sulfate reduction in Black Sea shelf sediments.
Applied and environmental microbiology 2000;66(7):2888-97.
2000: Fuchs B M; Zubkov M V; Sahm K; Burkill P H; Amann R
Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques.
Environmental microbiology 2000;2(2):191-201.
2000: Weller R; Glöckner F O; Amann R
16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides.
Systematic and applied microbiology 2000;23(1):107-14.
2000: Amann R
Who is out there? Microbial aspects of biodiversity.
Systematic and applied microbiology 2000;23(1):1-8.
1999: Antón J; Llobet-Brossa E; Rodríguez-Valera F; Amann R
Fluorescence in situ hybridization analysis of the prokaryotic community inhabiting crystallizer ponds.
Environmental microbiology 1999;1(6):517-23.
1999: Daims H; Brühl A; Amann R; Schleifer K H; Wagner M
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.
Systematic and applied microbiology 1999;22(3):434-44.
1999: Schramm A; Santegoeds C M; Nielsen H K; Ploug H; Wagner M; Pribyl M; Wanner J; Amann R; de Beer D
On the occurrence of anoxic microniches, denitrification, and sulfate reduction in aerated activated sludge.
Applied and environmental microbiology 1999;65(9):4189-96.
1999: Ravenschlag K; Sahm K; Pernthaler J; Amann R
High bacterial diversity in permanently cold marine sediments.
Applied and environmental microbiology 1999;65(9):3982-9.
1999: Sahm K; Knoblauch C; Amann R
Phylogenetic affiliation and quantification of psychrophilic sulfate-reducing isolates in marine Arctic sediments.
Applied and environmental microbiology 1999;65(9):3976-81.
1999: Glöckner F O; Fuchs B M; Amann R
Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.
Applied and environmental microbiology 1999;65(8):3721-6.
1999: Schramm A; de Beer D; van den Heuvel J C; Ottengraf S; Amann R
Microscale distribution of populations and activities of Nitrosospira and Nitrospira spp. along a macroscale gradient in a nitrifying bioreactor: quantification by in situ hybridization and the use of microsensors.
Applied and environmental microbiology 1999;65(8):3690-6.
1999: Zubkov M V; Fuchs B M; Eilers H; Burkill P H; Amann R
Determination of total protein content of bacterial cells by SYPRO staining and flow cytometry.
Applied and environmental microbiology 1999;65(7):3251-7.
1999: Rosselló-Mora R; Thamdrup B; Schäfer H; Weller R; Amann R
The response of the microbial community of marine sediments to organic carbon input under anaerobic conditions.
Systematic and applied microbiology 1999;22(2):237-48.
1999: Schulze R; Spring S; Amann R; Huber I; Ludwig W; Schleifer K H; Kämpfer P
Genotypic diversity of Acidovorax strains isolated from activated sludge and description of Acidovorax defluvii sp. nov.
Systematic and applied microbiology 1999;22(2):205-14.
1999: Meier H; Amann R; Ludwig W; Schleifer K H
Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G + C content.
Systematic and applied microbiology 1999;22(2):186-96.
1999: Rabus R; Wilkes H; Schramm A; Harms G; Behrends A; Amann R; Widdel F
Anaerobic utilization of alkylbenzenes and n-alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the beta-subclass of Proteobacteria.
Environmental microbiology 1999;1(2):145-57.
1999: Schönhuber W; Zarda B; Eix S; Rippka R; Herdman M; Ludwig W; Amann R
In situ identification of cyanobacteria with horseradish peroxidase-labeled, rRNA-targeted oligonucleotide probes.
Applied and environmental microbiology 1999;65(3):1259-67.
1999: Glöckner F O; Babenzien H D; Wulf J; Amann R
Phylogeny and diversity of Achromatium oxaliferum.
Systematic and applied microbiology 1999;22(1):28-38.
1999: Juretschko S; Schönhuber W; Kulakauskas S; Ehrlich D S; Schleifer K H; Amann R
In situ detection of Escherichia coli cells containing ColE1-related plasmids by hybridization to regulatory RNA II.
Systematic and applied microbiology 1999;22(1):1-8.
1998: Neef A; Amann R; Schlesner H; Schleifer K H
Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes.
Microbiology (Reading, England) 1998;144 ( Pt 12)():3257-66.
1998: Fuchs B M; Wallner G; Beisker W; Schwippl I; Ludwig W; Amann R
Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.
Applied and environmental microbiology 1998;64(12):4973-82.
1998: Schramm A; De Beer D; Wagner M; Amann R
Identification and activities in situ of Nitrosospira and Nitrospira spp. as dominant populations in a nitrifying fluidized bed reactor.
Applied and environmental microbiology 1998;64(9):3480-5.
1998: Frahm E; Heiber I; Hoffmann S; Koob C; Meier H; Ludwig W; Amann R; Schleifer K H; Obst U
Application of 23S rDNA-targeted oligonucleotide probes specific for enterococci to water hygiene control.
Systematic and applied microbiology 1998;21(3):450-3.
1998: Glöckner F O; Babenzien H D; Amann R
Phylogeny and identification in situ of Nevskia ramosa.
Applied and environmental microbiology 1998;64(5):1895-901.
1998: Stoffels M; Amann R; Ludwig W; Hekmat D; Schleifer K H
Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds.
Applied and environmental microbiology 1998;64(3):930-9.
1998: Spring S; Lins U; Amann R; Schleifer K H; Ferreira L C; Esquivel D M; Farina M
Phylogenetic affiliation and ultrastructure of uncultured magnetic bacteria with unusually large magnetosomes.
Archives of microbiology 1998;169(2):136-47.
1998: Michel R; Müller K D; Amann R; Schmid E N
Legionella-like slender rods multiplying within a strain of Acanthamoeba sp. isolated from drinking water.
Parasitology research 1998;84(1):84-8.
1997: Wallner G; Fuchs B; Spring S; Beisker W; Amann R
Flow sorting of microorganisms for molecular analysis.
Applied and environmental microbiology 1997;63(11):4223-31.
1997: Schönhuber W; Fuchs B; Juretschko S; Amann R
Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification.
Applied and environmental microbiology 1997;63(8):3268-73.
1997: Snaidr J; Amann R; Huber I; Ludwig W; Schleifer K H
Phylogenetic analysis and in situ identification of bacteria in activated sludge.
Applied and environmental microbiology 1997;63(7):2884-96.
1997: Amann R; Springer N; Schönhuber W; Ludwig W; Schmid E N; Müller K D; Michel R
Obligate intracellular bacterial parasites of acanthamoebae related to Chlamydia spp.
Applied and environmental microbiology 1997;63(1):115-21.
1996: Neef A; Zaglauer A; Meier H; Amann R; Lemmer H; Schleifer K H
Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms.
Applied and environmental microbiology 1996;62(12):4329-39.
1996: Amann R; Snaidr J; Wagner M; Ludwig W; Schleifer K H
In situ visualization of high genetic diversity in a natural microbial community.
Journal of bacteriology 1996;178(12):3496-500.
1996: Manz W; Amann R; Ludwig W; Vancanneyt M; Schleifer K H
Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment.
Microbiology (Reading, England) 1996;142 ( Pt 5)():1097-106.
1996: Springer N; Amann R; Ludwig W; Schleifer K H; Schmidt H
Polynucleobacter necessarius, an obligate bacterial endosymbiont of the hypotrichous ciliate Euplotes aediculatus, is a member of the beta-subclass of Proteobacteria.
FEMS microbiology letters 1996;135(2-3):333-6.
1995: Wallner G; Erhart R; Amann R
Flow cytometric analysis of activated sludge with rRNA-targeted probes.
Applied and environmental microbiology 1995;61(5):1859-66.
1995: Rosselló-Mora R A; Wagner M; Amann R; Schleifer K H
The abundance of Zoogloea ramigera in sewage treatment plants.
Applied and environmental microbiology 1995;61(2):702-7.
1995: Manz W; Amann R; Szewzyk R; Szewzyk U; Stenström T A; Hutzler P; Schleifer K H
In situ identification of Legionellaceae using 16S rRNA-targeted oligonucleotide probes and confocal laser scanning microscopy.
Microbiology (Reading, England) 1995;141 ( Pt 1)():29-39.
1994: Roller C; Wagner M; Amann R; Ludwig W; Schleifer K H
In situ probing of gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides.
Microbiology (Reading, England) 1994;140 ( Pt 10)():2849-58.
1994: Wagner M; Erhart R; Manz W; Amann R; Lemmer H; Wedi D; Schleifer K H
Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge.
Applied and environmental microbiology 1994;60(3):792-800.
1993: Springer N; Ludwig W; Amann R; Schmidt H J; Görtz H D; Schleifer K H
Occurrence of fragmented 16S rRNA in an obligate bacterial endosymbiont of Paramecium caudatum.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(21):9892-5.
1993: Manz W; Szewzyk U; Ericsson P; Amann R; Schleifer K H; Stenström T A
In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes.
Applied and environmental microbiology 1993;59(7):2293-8.
1993: Wagner M; Amann R; Lemmer H; Schleifer K H
Probing activated sludge with oligonucleotides specific for proteobacteria: inadequacy of culture-dependent methods for describing microbial community structure.
Applied and environmental microbiology 1993;59(5):1520-5.
1993: Wallner G; Amann R; Beisker W
Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms.
Cytometry 1993;14(2):136-43.
1992: Springer N; Ludwig W; Drozanski W; Amann R; Schleifer K H
The phylogenetic status of Sarcobium lyticum, an obligate intracellular bacterial parasite of small amoebae.
FEMS microbiology letters 1992;75(2-3):199-202.
1991: Zarda B; Amann R; Wallner G; Schleifer K H
Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides.
Journal of general microbiology 1991;137(12):2823-30.
1991: Amann R; Springer N; Ludwig W; Görtz H D; Schleifer K H
Identification in situ and phylogeny of uncultured bacterial endosymbionts.
Nature 1991;351(6322):161-4.
1988: Amann R; Ludwig W; Schleifer K H
Beta-subunit of ATP-synthase: a useful marker for studying the phylogenetic relationship of eubacteria.
Journal of general microbiology 1988;134(10):2815-21.

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