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Rob DeSalle

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TOP 3
Michael Eitel; Hans-Jürgen Osigus; Rob DeSalle; Bernd Schierwater
Global diversity of the placozoa.
Silvia Argimón; Alexander V Alekseyenko; Rob DeSalle; Page W Caufield
Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts.
Deodoro C S G Oliveira; Patrick M O'Grady; Francisca C Almeida; Miguel A Armella; Rob DeSalle; William J Etges
Monophyly, divergence times, and evolution of host plant use inferred from a revised phylogeny of the Drosophila repleta species group.

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All Publications

2013: Michael Eitel; Hans-Jürgen Osigus; Rob DeSalle; Bernd Schierwater
Global diversity of the placozoa.
PloS one 2013;8(4):e57131.
2013: Silvia Argimón; Alexander V Alekseyenko; Rob DeSalle; Page W Caufield
Phylogenetic analysis of glucosyltransferases and implications for the coevolution of mutans streptococci with their mammalian hosts.
PloS one 2013;8(2):e56305.
2012: Deodoro C S G Oliveira; Patrick M O'Grady; Francisca C Almeida; Miguel A Armella; Rob DeSalle; William J Etges
Monophyly, divergence times, and evolution of host plant use inferred from a revised phylogeny of the Drosophila repleta species group.
Molecular phylogenetics and evolution 2012;64(3):533-44.
2012: George Amato; Rob DeSalle
Assessing biodiversity funding during the sixth extinction.
BioEssays : news and reviews in molecular, cellular and developmental biology 2012;34(8):658-60.
2012: Jeffrey A Rosenfeld; Ansel Payne; Rob DeSalle
Random roots and lineage sorting.
Molecular phylogenetics and evolution 2012;64(1):12-20.
2012: Luiz Claudio Oliveira Lazzarini; Nalin Rastogi; Jeffrey Rosenfeld; Rob DeSalle; Véronique Hill; Richard C Huard; José Roberto Lapa e Silva; John L Ho
Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2012;12(4):798-806.
2012: Jeffrey A Rosenfeld; Rob DeSalle
E value cutoff and eukaryotic genome content phylogenetics.
Molecular phylogenetics and evolution 2012;63(2):342-50.
2012: Maribasappa Karched; Paul J Planet; Rob DeSalle; David Furgang; Daniel H Fine
Genome sequence of Aggregatibacter actinomycetemcomitans RHAA1, isolated from a rhesus macaque, an Old World primate.
Journal of bacteriology 2012;194(5):1275-6.
2012: Sabrina Simon; Apurva Narechania; Rob DeSalle; Heike Hadrys
Insect phylogenomics: exploring the source of incongruence using new transcriptomic data.
Genome biology and evolution 2012;4(12):1295-309.
2012: Phaedra Doukakis; George Amato; Rob DeSalle; Ellen K Pikitch; Anna Rothschild; Sergios-Orestis Kolokotronis
Testing the effectiveness of an international conservation agreement: marketplace forensics and CITES caviar trade regulation.
PloS one 2012;7(7):e40907.
2012: Ana Sancho; Endalkachew A Alemu; Javier U Chicote; Rob DeSalle; Jordi Duran; Antonio García-España; Terje Johansen; Trond Lamark; Maria J Macias; Caroline Mauvezin; Manuel Palacín; Miriam Royo; David Sala; Antonio Zorzano
DOR/Tp53inp2 and Tp53inp1 constitute a metazoan gene family encoding dual regulators of autophagy and transcription.
PloS one 2012;7(3):e34034.
2012: M M Pentony; P Winters; R Bonneau; Rob DeSalle; K Drew; A Narechania; D Penfold-Brown; Michael D Purugganan
The plant proteome folding project: structure and positive selection in plant protein families.
Genome biology and evolution 2012;4(3):360-71.
2012: Apurva Narechania; Richard H Baker; Rob DeSalle; Sergios-Orestis Kolokotronis; Ryan Sit; Paul J Planet
Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria.
Genome biology and evolution 2012;4(1):30-43.
2011: Robert Hanner; Rob DeSalle; Robert D Ward; Sergios-Orestis Kolokotronis
The Fish Barcode of Life (FISH-BOL) special issue.
Mitochondrial DNA 2011;22 Suppl 1():1-2.
2011: Chanda E Bennett; Byron S Wilson; Rob DeSalle
DNA barcoding of an invasive mammal species, the small Indian mongoose (Herpestes javanicus; E. Geoffroy Saint-Hillaire 1818) in the Caribbean and Hawaiian Islands.
Mitochondrial DNA 2011;22(1-2):12-8.
2011: Paul Z Goldstein; Rob DeSalle
Integrating DNA barcode data and taxonomic practice: determination, discovery, and description.
BioEssays : news and reviews in molecular, cellular and developmental biology 2011;33(2):135-47.
2011: Patrick M O'Grady; Richard T Lapoint; James Bonacum; Jackline Lasola; Elaine Owen; Yifei Wu; Rob DeSalle
Phylogenetic and ecological relationships of the Hawaiian Drosophila inferred by mitochondrial DNA analysis.
Molecular phylogenetics and evolution 2011;58(2):244-56.
2011: Francisca C Almeida; Rob DeSalle; Norberto P Giannini; Nancy B Simmons
Evolutionary relationships of the old world fruit bats (Chiroptera, Pteropodidae): another star phylogeny?
BMC evolutionary biology 2011;11():281.
2011: Benjamin Smith; Koenraad van Doorslaer; Sholom Wacholder; Tao Wang; Kai Yu; Zigui Chen; Rob DeSalle; Rolando Herrero; Laura Reimers; Mark Schiffman; Robert D Burk
Sequence imputation of HPV16 genomes for genetic association studies.
PloS one 2011;6(6):e21375.
2011: Zigui Chen; Rob DeSalle; Patti Gravitt; Rolando Herrero; Ann W Hsing; Vikrant V Sahasrabuddhe; Mark Schiffman; MICHEL SEGONDY; Kathryn Anastos; Robert D Burk
Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67.
PloS one 2011;6(5):e20183.
2010: Patricia Escalante; Rob DeSalle; Sergios-Orestis Kolokotronis
The MexBOL initiative.
Mitochondrial DNA 2010;21 Suppl 1():1-2.
2010: Beatriz Perez-Sweeney; Rob DeSalle; John L Ho
An introduction to a novel population genetic approach for HIV characterization.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2010;10(8):1155-64.
2010: Amir Yassin; Therese A Markow; Apurva Narechania; Patrick M O'Grady; Rob DeSalle
The genus Drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding.
Molecular phylogenetics and evolution 2010;57(2):509-17.
2010: Rob DeSalle; Roso Mares; Antonio Garcia-España
Evolution of cysteine patterns in the large extracellular loop of tetraspanins from animals, fungi, plants and single-celled eukaryotes.
Molecular phylogenetics and evolution 2010;56(1):486-91.
2010: Yael Wyner; Rob DeSalle
Taking the conservation biology perspective to secondary school classrooms.
Conservation biology : the journal of the Society for Conservation Biology 2010;24(3):649-54.
2010: Amir Yassin; E Kurt Lienau; Apurva Narechania; Rob DeSalle
Catching the phylogenic history through the ontogenic hourglass: a phylogenomic analysis of Drosophila body segmentation genes.
Evolution & development 2010;12(3):288-95.
2010: Mark Schiffman; Ana Cecilia Rodriguez; Zigui Chen; Sholom Wacholder; Rolando Herrero; Allan Hildesheim; Rob DeSalle; Brian Befano; Kai Yu; Mahboobeh Safaeian; Mark E Sherman; Jorge Morales; Diego Guillen; Mario Alfaro; Martha Hutchinson; Diane Solomon; Philip E Castle; Robert D Burk
A population-based prospective study of carcinogenic human papillomavirus variant lineages, viral persistence, and cervical neoplasia.
Cancer research 2010;70(8):3159-69.
2010: Maria Pia Di Bonaventura; Ernest K Lee; Rob DeSalle; Paul J Planet
A whole-genome phylogeny of the family Pasteurellaceae.
Molecular phylogenetics and evolution 2010;54(3):950-6.
2010: Angélica Cibrián-Jaramillo; Jose E De la Torre-Bárcena; Ernest K Lee; Manpreet S Katari; Damon P Little; Dennis W Stevenson; Robert A Martienssen; Gloria M Coruzzi; Rob DeSalle
Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.
Genome biology and evolution 2010;2():225-39.
2010: Anthony J Deo; Ramiro Costa; Lynn E DeLisi; Rob DeSalle; Fatemeh Haghighi
A novel analytical framework for dissecting the genetic architecture of behavioral symptoms in neuropsychiatric disorders.
PloS one 2010;5(3):e9714.
2009: Vadim J Birstein; Rob DeSalle; Phaedra Doukakis; Robert Hanner; Georgii I Ruban; Eugene Wong
Testing taxonomic boundaries and the limit of DNA barcoding in the Siberian sturgeon, Acipenser baerii.
Mitochondrial DNA 2009;20(5-6):110-8.
2009: David F Gruber; Rob DeSalle; E Kurt Lienau; Dan Tchernov; Vincent A Pieribone; Hung-Teh Kao
Novel internal regions of fluorescent proteins undergo divergent evolutionary patterns.
Molecular biology and evolution 2009;26(12):2841-8.
2009: Francisca C Almeida; Norberto P Giannini; Rob DeSalle; Nancy B Simmons
The phylogenetic relationships of cynopterine fruit bats (Chiroptera: Pteropodidae: Cynopterinae).
Molecular phylogenetics and evolution 2009;53(3):772-83.
2009: Paola M Barral; Devanand Sarkar; Zao-Zhong Su; Glen N Barber; Rob DeSalle; Vincent R Racaniello; Paul B Fisher
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
Pharmacology & therapeutics 2009;124(2):219-34.
2009: Zigui Chen; Koenraad van Doorslaer; Rob DeSalle; Charles E Wood; Jay R Kaplan; Janice D Wagner; Robert D Burk
Genomic diversity and interspecies host infection of alpha12 Macaca fascicularis papillomaviruses (MfPVs).
Virology 2009;393(2):304-10.
2009: Jeffrey A Rosenfeld; Zhenyu Xuan; Rob DeSalle
Investigating repetitively matching short sequencing reads: the enigmatic nature of H3K9me3.
Epigenetics : official journal of the DNA Methylation Society 2009;4(7):476-86.
2009: Bernd Schierwater; Sergios-Orestis Kolokotronis; Michael Eitel; Rob DeSalle
The Diploblast-Bilateria Sister hypothesis: parallel revolution of a nervous systems may have been a simple step.
Communicative & integrative biology 2009;2(5):403-5.
2009: Antonio Garcia-España; Rob DeSalle
Intron sliding in tetraspanins.
Communicative & integrative biology 2009;2(5):394-5.
2009: Rob DeSalle
Molecular tooth decay.
PLoS genetics 2009;5(9):e1000655.
2009: Esther Camp; Ana V Sánchez-Sánchez; Antonio García-España; Rob DeSalle; Lina Odqvist; José Enrique O'Connor; José L Mullor
Nanog regulates proliferation during early fish development.
Stem cells (Dayton, Ohio) 2009;27(9):2081-91.
2009: Maria Pia Di Bonaventura; Rob DeSalle; Mihai Pop; Niranjan Nagarajan; David H Figurski; Daniel H Fine; Jeffrey B Kaplan; Paul J Planet
Complete genome sequence of Aggregatibacter (Haemophilus) aphrophilus NJ8700.
Journal of bacteriology 2009;191(14):4693-4.
2009: Danielle de Jong; Michael Eitel; Wolfgang Jakob; Hans-Juergen Osigus; Heike Hadrys; Rob DeSalle; Bernd Schierwater
Multiple dicer genes in the early-diverging metazoa.
Molecular biology and evolution 2009;26(6):1333-40.
2009: E Kurt Lienau; Rob DeSalle
Evidence, content and corroboration and the Tree of Life.
Acta biotheoretica 2009;57(1-2):187-99.
2009: Zigui Chen; Rob DeSalle; Mark Schiffman; Rolando Herrero; Robert D Burk
Evolutionary dynamics of variant genomes of human papillomavirus types 18, 45, and 97.
Journal of virology 2009;83(3):1443-55.
2009: Bernd Schierwater; Danielle de Jong; Rob DeSalle
Placozoa and the evolution of Metazoa and intrasomatic cell differentiation.
The international journal of biochemistry & cell biology 2009;41(2):370-9.
2009: Bernd Schierwater; Michael Eitel; Wolfgang Jakob; Hans-Jürgen Osigus; Heike Hadrys; Stephen L Dellaporta; Sergios-Orestis Kolokotronis; Rob DeSalle
Concatenated analysis sheds light on early metazoan evolution and fuels a modern "urmetazoon" hypothesis.
PLoS biology 2009;7(1):e20.
2009: Angélica Cibrián-Jaramillo; Christine D Bacon; Nancy C Garwood; Richard M Bateman; Meredith M Thomas; Steve Russell; C Donovan Bailey; William J Hahn; Samuel G M Bridgewater; Rob DeSalle
Population genetics of the understory fishtail palm Chamaedorea ernesti-augusti in Belize: high genetic connectivity with local differentiation.
BMC genetics 2009;10():65.
2009: Jose Eduardo de la Torre-Bárcena; Sergios-Orestis Kolokotronis; Ernest K Lee; Dennis W Stevenson; Eric D Brenner; Manpreet S Katari; Gloria M Coruzzi; Rob DeSalle
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.
PloS one 2009;4(6):e5764.
2009: Mary Egan; Ernest K Lee; Joanna C Chiu; Gloria Coruzzi; Rob DeSalle
Gene orthology assessment with OrthologID.
Methods in molecular biology (Clifton, N.J.) 2009;537():23-38.
2009: Jeffrey A Rosenfeld; Zhibin Wang; Dustin E Schones; Keji Zhao; Rob DeSalle; Michael Q Zhang
Determination of enriched histone modifications in non-genic portions of the human genome.
BMC genomics 2009;10():143.
2009: Antonio Garcia-España; Roso Mares; Tung-Tien Sun; Rob DeSalle
Intron evolution: testing hypotheses of intron evolution using the phylogenomics of tetraspanins.
PloS one 2009;4(3):e4680.
2009: Francisca C Almeida; Rob DeSalle
Orthology, function and evolution of accessory gland proteins in the Drosophila repleta group.
Genetics 2009;181(1):235-45.
2008: Devanand Sarkar; Rob DeSalle; Paul B Fisher
Evolution of MDA-5/RIG-I-dependent innate immunity: independent evolution by domain grafting.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(44):17040-5.
2008: Neil Sarkar; Paul J Planet; Rob DeSalle
caos software for use in character-based DNA barcoding.
Molecular ecology resources 2008;8(6):1256-9.
2008: Jeffrey A Rosenfeld; Rob DeSalle; Ernest K Lee; Patrick O'Grady
Using whole genome presence/absence data to untangle function in 12 Drosophila genomes.
Fly 2008;2(6):291-9.
2008: Rob DeSalle; Bernd Schierwater
An even "newer" animal phylogeny.
BioEssays : news and reviews in molecular, cellular and developmental biology 2008;30(11-12):1043-7.
2008: Mike Friedman; Rob DeSalle
Mitochondrial DNA extraction and sequencing of formalin-fixed archival snake tissue.
Mitochondrial DNA 2008;19(5):433-7.
2008: Francisca C Almeida; Rob DeSalle
Evidence of adaptive evolution of accessory gland proteins in closely related species of the Drosophila repleta group.
Molecular biology and evolution 2008;25(9):2043-53.
2008: Patrick M O'Grady; Rob DeSalle
Out of Hawaii: the origin and biogeography of the genus Scaptomyza (Diptera: Drosophilidae).
Biology letters 2008;4(2):195-9.
2008: Antonio Garcia-España; Pei-Jung Chung; Neil Sarkar; Eric Stiner; Tung-Tien Sun; Rob DeSalle
Appearance of new tetraspanin genes during vertebrate evolution.
Genomics 2008;91(4):326-34.
2008: Angélica Cibrián-Jaramillo; William J Hahn; Rob DeSalle
PERMANENT GENETIC RESOURCES: Development of microsatellite markers of the Mexican understorey palm Chamaedorea elegans, cross-species genotyping, and amplification in congeners.
Molecular ecology resources 2008;8(2):322-4.
2008: J Rach; Rob DeSalle; Neil Sarkar; Bernd Schierwater; Heike Hadrys
Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata.
Proceedings. Biological sciences / The Royal Society 2008;275(1632):237-47.
2008: Francisca C Almeida; Magdalena Leszczyniecka; Paul B Fisher; Rob DeSalle
Examining ancient inter-domain horizontal gene transfer.
Evolutionary bioinformatics online 2008;4():109-19.
2008: Kelly B Wyatt; Paula F Campos; M Thomas P Gilbert; Sergios-Orestis Kolokotronis; Wayne H Hynes; Rob DeSalle; Stanley J Ball; Peter Daszak; Ross D E MacPhee; Alex D Greenwood
Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease.
PloS one 2008;3(11):e3602.
2008: Neil Sarkar; Mary G Egan; Gloria Coruzzi; Ernest K Lee; Rob DeSalle
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics.
BMC bioinformatics 2008;9():103.
2007: Rob DeSalle
Phenetic and DNA taxonomy; a comment on Waugh.
BioEssays : news and reviews in molecular, cellular and developmental biology 2007;29(12):1289-90.
2007: Bernd Schierwater; Rob DeSalle
Can we ever identify the Urmetazoan?
Integrative and comparative biology 2007;47(5):670-6.
2007: Rob DeSalle; Bernd Schierwater
Key transitions in animal evolution.
Integrative and comparative biology 2007;47(5):667-9.
2007: Hung-Teh Kao; Shelby Sturgis; Rob DeSalle; Julia Tsai; Douglas Davis; David F Gruber; Vincent A Pieribone
Dynamic regulation of fluorescent proteins from a single species of coral.
Marine biotechnology (New York, N.Y.) 2007;9(6):733-46.
2007: Zigui Chen; Mark Schiffman; Rolando Herrero; Rob DeSalle; Robert D Burk
Human papillomavirus (HPV) types 101 and 103 isolated from cervicovaginal cells lack an E6 open reading frame (ORF) and are related to gamma-papillomaviruses.
Virology 2007;360(2):447-53.
2007: John Gatesy; Rob DeSalle; Niklas Wahlberg
How many genes should a systematist sample? Conflicting insights from a phylogenomic matrix characterized by replicated incongruence.
Systematic biology 2007;56(2):355-63.
2007: Eugenia Naro-Maciel; José Henrique Becker; Eduardo H S M Lima; Maria Angela Marcovaldi; Rob DeSalle
Testing dispersal hypotheses in foraging green sea turtles (Chelonia mydas) of Brazil.
The Journal of heredity 2007;98(1):29-39.
2006: Antonio Garcia-España; Pei-Jung Chung; Xiaoqian Zhao; Andy Lee; Angel Pellicer; Jun Yu; Tung-Tien Sun; Rob DeSalle
Origin of the tetraspanin uroplakins and their co-evolution with associated proteins: implications for uroplakin structure and function.
Molecular phylogenetics and evolution 2006;41(2):355-67.
2006: Rob DeSalle
Species discovery versus species identification in DNA barcoding efforts: response to Rubinoff.
Conservation biology : the journal of the Society for Conservation Biology 2006;20(5):1545-7.
2006: Robert D Burk; Rob DeSalle
The tango and tangle of human papillomavirus and the human genome.
Journal of the National Cancer Institute 2006;98(15):1026-7.
2006: E Kurt Lienau; Rob DeSalle; Jeffrey A Rosenfeld; Paul J Planet
Reciprocal illumination in the gene content tree of life.
Systematic biology 2006;55(3):441-53.
2006: Joanna C Chiu; Ernest K Lee; Mary G Egan; Neil Sarkar; Gloria M Coruzzi; Rob DeSalle
OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
Bioinformatics (Oxford, England) 2006;22(6):699-707.
2006: Rob DeSalle
What's in a character?
Journal of biomedical informatics 2006;39(1):6-17.
2006: Jim Leebens-Mack; Todd Vision; Eric Brenner; John E Bowers; Steven Cannon; Mark J Clement; Clifford W Cunningham; Claude W dePamphilis; Rob DeSalle; Jeff J Doyle; Jonathan Eisen; Xun Gu; John Harshman; Robert K Jansen; Elizabeth A Kellogg; Eugene V Koonin; Brent D Mishler; Hervé Philippe; J Chris Pires; Yin-Long Qiu; Seung-Yon Rhee; Kimmen Sjölander; Douglas E Soltis; Pamela S Soltis; Dennis W Stevenson; Kerr Wall; Tandy Warnow; Christian Zmasek
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).
Omics : a journal of integrative biology 2006;10(2):231-7.
2006: Jose E B de la Torre; Mary G Egan; Manpreet S Katari; Eric D Brenner; Dennis W Stevenson; Gloria M Coruzzi; Rob DeSalle
ESTimating plant phylogeny: lessons from partitioning.
BMC evolutionary biology 2006;6():48.
2005: Apurva Narechania; Zigui Chen; Rob DeSalle; Robert D Burk
Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses.
Journal of virology 2005;79(24):15503-10.
2005: Rob DeSalle; Mary G Egan; Mark E Siddall
The unholy trinity: taxonomy, species delimitation and DNA barcoding.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2005;360(1462):1905-16.
2005: Angelique Corthals; Rob DeSalle
An application of tissue and DNA banking for genomics and conservation: the Ambrose Monell Cryo-Collection (AMCC).
Systematic biology 2005;54(5):819-23.
2005: James Bonacum; Patrick M O'Grady; Michael Kambysellis; Rob DeSalle
Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila.
Molecular phylogenetics and evolution 2005;37(1):73-82.
2005: Daniela Calcagnotto; Scott A Schaefer; Rob DeSalle
Relationships among characiform fishes inferred from analysis of nuclear and mitochondrial gene sequences.
Molecular phylogenetics and evolution 2005;36(1):135-53.
2005: Thorsten Hadrys; Rob DeSalle; Sven Sagasser; Nina Fischer; Bernd Schierwater
The Trichoplax PaxB gene: a putative Proto-PaxA/B/C gene predating the origin of nerve and sensory cells.
Molecular biology and evolution 2005;22(7):1569-78.
2005: Mark Schiffman; Rolando Herrero; Rob DeSalle; Allan Hildesheim; Sholom Wacholder; Ana Cecilia Rodriguez; M Concepcion Bratti; Mark E Sherman; Jorge Morales; Diego Guillen; Mario Alfaro; Martha Hutchinson; Thomas C Wright; Diane Solomon; Zigui Chen; John E Schussler; Philip E Castle; Robert D Burk
The carcinogenicity of human papillomavirus types reflects viral evolution.
Virology 2005;337(1):76-84.
2005: Zigui Chen; Masanori Terai; Leiping Fu; Rolando Herrero; Rob DeSalle; Robert D Burk
Diversifying selection in human papillomavirus type 16 lineages based on complete genome analyses.
Journal of virology 2005;79(11):7014-23.
2005: Kevin G Helfenbein; Rob DeSalle
Falsifications and corroborations: Karl Popper's influence on systematics.
Molecular phylogenetics and evolution 2005;35(1):271-80.
2005: Rob DeSalle; T Ryan Gregory; J Spencer Johnston
Preparation of samples for comparative studies of arthropod chromosomes: visualization, in situ hybridization, and genome size estimation.
Methods in enzymology 2005;395():460-88.
2005: Rob DeSalle
Animal phylogenomics: multiple interspecific genome comparisons.
Methods in enzymology 2005;395():104-33.
2004: Jeffrey A Rosenfeld; Neil Sarkar; Paul J Planet; David H Figurski; Rob DeSalle
ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.
Bioinformatics (Oxford, England) 2004;20(18):3462-5.
2004: Lawrence H Herbst; Ada Ene; Mei Su; Rob DeSalle; Jack Lenz
Tumor outbreaks in marine turtles are not due to recent herpesvirus mutations.
Current biology : CB 2004;14(17):R697-9.
2004: Rob DeSalle; George Amato
The expansion of conservation genetics.
Nature reviews. Genetics 2004;5(9):702-12.
2004: Apurva Narechania; Masanori Terai; Zigui Chen; Rob DeSalle; Robert D Burk
Lack of the canonical pRB-binding domain in the E7 ORF of artiodactyl papillomaviruses is associated with the development of fibropapillomas.
The Journal of general virology 2004;85(Pt 5):1243-50.
2004: Magdalena Leszczyniecka; Rob DeSalle; Dong-Chul Kang; Paul B Fisher
The origin of polynucleotide phosphorylase domains.
Molecular phylogenetics and evolution 2004;31(1):123-30.
2003: Kenneth Birnbaum; Rob DeSalle; Charles M Peters; Philip N Benfey
Integrating gene flow, crop biology, and farm management in on-farm conservation of avocado (Persea americana, Lauraceae).
American journal of botany 2003;90(11):1619-27.
2003: Rob DeSalle; M A Branham; P O'Grady; John Gatesy
The evolution of HOM-C homeoboxes in the Dipteran family Drosophilidae.
Insect molecular biology 2003;12(4):345-51.
2003: Paul Z Goldstein; Rob DeSalle
Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens.
Molecular ecology 2003;12(7):1993-8.
2003: John Gatesy; George Amato; Mark A Norell; Rob DeSalle; Cheryl Y Hayashi
Combined support for wholesale taxic atavism in gavialine crocodylians.
Systematic biology 2003;52(3):403-22.
2003: Paul J Planet; Scott Charles Kachlany; Daniel H Fine; Rob DeSalle; David H Figurski
The Widespread Colonization Island of Actinobacillus actinomycetemcomitans.
Nature genetics 2003;34(2):193-8.
2003: D C S G Oliveira; E H Wintermute; William J Etges; WB Heed; Patrick M O'Grady; Rob DeSalle
Hierarchical structure in the Drosophila mojavensis cluster (Diptera: Drosophilidae).
Hereditas 2003;139(3):223-7.
2002: Howard Rosenbaum; M T Weinrich; S A Stoleson; J P Gibbs; C Scott Baker; Rob DeSalle
The effect of differential reproductive success on population genetic structure: correlations of life history with matrilines in humpback whales of the gulf of maine.
The Journal of heredity 2002;93(6):389-99.
2002: François Roudier; Gary Schindelman; Rob DeSalle; Philip N Benfey
The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion.
Plant physiology 2002;130(2):538-48.
2002: Masanori Terai; Rob DeSalle; Robert D Burk
Lack of canonical E6 and E7 open reading frames in bird papillomaviruses: Fringilla coelebs papillomavirus and Psittacus erithacus timneh papillomavirus.
Journal of virology 2002;76(19):10020-3.
2002: Neil Sarkar; Joseph W Thornton; Paul J Planet; David H Figurski; Bernd Schierwater; Rob DeSalle
An automated phylogenetic key for classifying homeoboxes.
Molecular phylogenetics and evolution 2002;24(3):388-99.
2002: Bernd Schierwater; Stephen L Dellaporta; Rob DeSalle
Is the evolution of Cnox-2 Hox/ParaHox genes "multicolored" and "polygenealogical?".
Molecular phylogenetics and evolution 2002;24(3):374-8.
2002: John Gatesy; Conrad Matthee; Rob DeSalle; Cheryl Y Hayashi
Resolution of a supertree/supermatrix paradox.
Systematic biology 2002;51(4):652-64.
2002: Joanna C Chiu; Eric D Brenner; Rob DeSalle; Michael N Nitabach; Todd C Holmes; Gloria M Coruzzi
Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana.
Molecular biology and evolution 2002;19(7):1066-82.
2002: Yael M Wyner; Steig E Johnson; Rebecca M Stumpf; Rob DeSalle
Genetic assessment of a white-collared x red-fronted lemur hybrid zone at Andringitra, Madagascar.
American journal of primatology 2002;57(2):51-66.
2002: Michael T Borchers; Tracy Ansay; Rob DeSalle; Bruce L Daugherty; Huahao Shen; Michael Metzger; Nancy A Lee; James J Lee
In vitro assessment of chemokine receptor-ligand interactions mediating mouse eosinophil migration.
Journal of leukocyte biology 2002;71(6):1033-41.
2002: Neil Sarkar; Paul J Planet; T E Bael; S E Stanley; Mark E Siddall; Rob DeSalle; David H Figurski
Characteristic attributes in cancer microarrays.
Journal of biomedical informatics 2002;35(2):111-22.
2002: Patrick M O'Grady; CM Durando; WB Heed; M Wasserman; William J Etges; Rob DeSalle
Genetic divergence within the Drosophila mayaguana subcluster, a closely related triad of Caribbean species in the repleta species group.
Hereditas 2002;136(3):240-5.
2002: M Zilversmit; P O'Grady; Rob DeSalle
Shallow genomics, phylogenetics, and evolution in the family Drosophilidae.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():512-23.
2002: Ran H Bang; Ted R Schultz; Rob DeSalle
Development, homology and systematics.
EXS 2002;(92):175-86.
2002: Gonzalo Giribet; Rob DeSalle; Ward C Wheeler
'Pluralism' and the aims of phylogenetic research.
EXS 2002;(92):141-6.
2001: C D Specht; W J Kress; Dennis W Stevenson; Rob DeSalle
A molecular phylogeny of Costaceae (Zingiberales).
Molecular phylogenetics and evolution 2001;21(3):333-45.
2001: Scott Charles Kachlany; Paul J Planet; Rob DeSalle; Daniel H Fine; David H Figurski
Genes for tight adherence of Actinobacillus actinomycetemcomitans: from plaque to plague to pond scum.
Trends in microbiology 2001;9(9):429-37.
2001: Bernd Schierwater; Rob DeSalle
Current problems with the zootype and the early evolution of Hox genes.
The Journal of experimental zoology 2001;291(2):169-74.
2001: Paul J Planet; Rob DeSalle; Mark E Siddall; T Bael; Neil Sarkar; S E Stanley
Systematic analysis of DNA microarray data: ordering and interpreting patterns of gene expression.
Genome research 2001;11(7):1149-55.
2001: benoit lacombe; Dirk Becker; Rainer Hedrich; Rob DeSalle; M Hollmann; June M Kwak; Julian I Schroeder; N Le Novère; Hong Gil Nam; E P Spalding; M Tester; F J Turano; J Chiu; Gloria M Coruzzi
The identity of plant glutamate receptors.
Science (New York, N.Y.) 2001;292(5521):1486-7.
2001: Scott Charles Kachlany; Paul J Planet; Rob DeSalle; Daniel H Fine; David H Figurski; Jeffrey B Kaplan
flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans.
Molecular microbiology 2001;40(3):542-54.
2001: Alex D Greenwood; F Lee; Cristian Capelli; Rob DeSalle; Alexei N Tikhonov; P A Marx; Ross D E MacPhee
Evolution of endogenous retrovirus-like elements of the woolly mammoth (Mammuthus primigenius) and its relatives.
Molecular biology and evolution 2001;18(5):840-7.
2001: Paul J Planet; Scott Charles Kachlany; Rob DeSalle; David H Figurski
Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2503-8.
2001: Richard H Baker; Gerald S Wilkinson; Rob DeSalle
Phylogenetic utility of different types of molecular data used to infer evolutionary relationships among stalk-eyed flies (Diopsidae).
Systematic biology 2001;50(1):87-105.
2001: Patrick M O'Grady; Richard H Baker; CM Durando; William J Etges; Rob DeSalle
Polytene chromosomes as indicators of phylogeny in several species groups of Drosophila.
BMC evolutionary biology 2001;1():6.
2000: Howard Rosenbaum; Robert L Brownell; Moira W Brown; Cathy M Schaeff; Vicky A Portway; Bradley N White; S Malik; L A Pastene; Nathalie J Patenaude; C Scott Baker; M Goto; Peter B Best; Phillip J Clapham; P Hamilton; M Moore; Roger Payne; Victoria J Rowntree; C T Tynan; J L Bannister; Rob DeSalle
World-wide genetic differentiation of Eubalaena: questioning the number of right whale species.
Molecular ecology 2000;9(11):1793-802.
2000: Scott Charles Kachlany; Paul J Planet; Mrinal K Bhattacharjee; E Kollia; Rob DeSalle; Daniel H Fine; David H Figurski
Nonspecific adherence by Actinobacillus actinomycetemcomitans requires genes widespread in bacteria and archaea.
Journal of bacteriology 2000;182(21):6169-76.
2000: CM Durando; Richard H Baker; William J Etges; WB Heed; M Wasserman; Rob DeSalle
Phylogenetic analysis of the repleta species group of the genus Drosophila using multiple sources of characters.
Molecular phylogenetics and evolution 2000;16(2):296-307.
2000: Joseph W Thornton; Rob DeSalle
A new method to localize and test the significance of incongruence: detecting domain shuffling in the nuclear receptor superfamily.
Systematic biology 2000;49(2):183-201.
2000: Yael M Wyner; Rob DeSalle; R Absher
Phylogeny and character behavior in the family Lemuridae.
Molecular phylogenetics and evolution 2000;15(1):124-34.
2000: R Bang; Rob DeSalle; W Wheeler
Transformationalism, taxism, and developmental biology in systematics.
Systematic biology 2000;49(1):19-27.
2000: P M O'Grady; Rob DeSalle
How the fruit fly changed (some of) its spots.
Current biology : CB 2000;10(2):R75-7.
2000: Joseph W Thornton; Rob DeSalle
Gene family evolution and homology: genomics meets phylogenetics.
Annual review of genomics and human genetics 2000;1():41-73.
1999: Hung-Teh Kao; Barbara Porton; Sabine Hilfiker; Giovanni Stefani; Vincent A Pieribone; Rob DeSalle; Paul Greengard
Molecular evolution of the synapsin gene family.
The Journal of experimental zoology 1999;285(4):360-77.
1999: P Doukakis; V J Birstein; G I Ruban; Rob DeSalle
Molecular genetic analysis among subspecies of two Eurasian sturgeon species, Acipenser baerii and A. stellatus.
Molecular ecology 1999;8(12 Suppl 1):S117-27.
1999: Yael M Wyner; G Amato; Rob DeSalle
Captive breeding, reintroduction, and the conservation genetics of black and white ruffed lemurs, Varecia variegata variegata.
Molecular ecology 1999;8(12 Suppl 1):S107-15.
1999: J Chiu; Rob DeSalle; HM Lam; L Meisel; Gloria M Coruzzi
Molecular evolution of glutamate receptors: a primitive signaling mechanism that existed before plants and animals diverged.
Molecular biology and evolution 1999;16(6):826-38.
1999: J Stark; J Bonacum; J Remsen; Rob DeSalle
The evolution and development of dipteran wing veins: a systematic approach.
Annual review of entomology 1999;44():97-129.
1998: Richard H Baker; X Yu; Rob DeSalle
Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees.
Molecular phylogenetics and evolution 1998;9(3):427-36.
1998: J Remsen; Rob DeSalle
Character congruence of multiple data partitions and the origin of the Hawaiian Drosophilidae.
Molecular phylogenetics and evolution 1998;9(2):225-35.
1998: A V Brower; Rob DeSalle
Patterns of mitochondrial versus nuclear DNA sequence divergence among nymphalid butterflies: the utility of wingless as a source of characters for phylogenetic inference.
Insect molecular biology 1998;7(1):73-82.
1997: Rob DeSalle; A V Brower
Process partitions, congruence, and the independence of characters: inferring relationships among closely related Hawaiian Drosophila from multiple gene regions.
Systematic biology 1997;46(4):751-64.
1997: Richard H Baker; Rob DeSalle
Multiple sources of character information and the phylogeny of Hawaiian drosophilids.
Systematic biology 1997;46(4):654-73.
1997: Howard Rosenbaum; Mary G Egan; Phillip J Clapham; Robert L Brownell; Rob DeSalle
An effective method for isolating DNA from historical specimens of baleen.
Molecular ecology 1997;6(7):677-81.
1997: John Gatesy; G Amato; E Vrba; G Schaller; Rob DeSalle
A cladistic analysis of mitochondrial ribosomal DNA from the Bovidae.
Molecular phylogenetics and evolution 1997;7(3):303-19.
1996: Donat Agosti; D Jacobs; Rob DeSalle
On combining protein sequences and nucleic acid sequences in phylogenetic analysis: the homeobox protein case.
Cladistics : the international journal of the Willi Hennig Society 1996;12():65-82.
1996: Rob DeSalle; Donat Agosti; M Whiting; B Perez-Sweeney; J Remsen; R Baker; J Bonacum; R Bang
Crossroads, milestones and landmarks in insect development and evolution: implications for systematics.
Aliso 1996;14(4):305-21.
1996: Rob DeSalle; E Bonwich
DNA isolation, manipulation and characterization from old tissues.
Genetic engineering 1996;18():13-32.
1995: D Bridge; C W Cunningham; Rob DeSalle; Leo W Buss
Class-level relationships in the phylum Cnidaria: molecular and morphological evidence.
Molecular biology and evolution 1995;12(4):679-89.
1995: C G Wray; David K Jacobs; R Kostriken; A P Vogler; R Baker; Rob DeSalle
Homologues of the engrailed gene from five molluscan classes.
FEBS letters 1995;365(1):71-4.
1995: C G Wray; M R Langer; Rob DeSalle; J J Lee; J H Lipps
Origin of the foraminifera.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(7):3075.
1995: Ward C Wheeler; John Gatesy; Rob DeSalle
Elision: a method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites.
Molecular phylogenetics and evolution 1995;4(1):1-9.
1995: C G Wray; M R Langer; Rob DeSalle; J J Lee; J H Lipps
Origin of the foraminifera.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(1):141-5.
1994: Rob DeSalle; D Grimaldi
Very old DNA.
Current opinion in genetics & development 1994;4(6):810-5.
1994: Rob DeSalle
Flies and congruence.
American journal of physical anthropology 1994;94(1):125-41.
1994: A P Vogler; Rob DeSalle
Evolution and phylogenetic information content of the ITS-1 region in the tiger beetle Cicindela dorsalis.
Molecular biology and evolution 1994;11(3):393-405.
1994: C G Wray; Rob DeSalle
Phylogenetic utility of ubiquitin DNA sequence from 3 marine protist lineages.
Molecular marine biology and biotechnology 1994;3(1):13-22.
1993: A P Vogler; C B Knisley; S B Glueck; J M Hill; Rob DeSalle
Using molecular and ecological data to diagnose endangered populations of the puritan tiger beetle Cicindela puritana.
Molecular ecology 1993;2(6):375-83.
1993: John Gatesy; Rob DeSalle; W Wheeler
Alignment-ambiguous nucleotide sites and the exclusion of systematic data.
Molecular phylogenetics and evolution 1993;2(2):152-7.
1993: H Hadrys; B Schierwater; Stephen L Dellaporta; Rob DeSalle; Leo W Buss
Determination of paternity in dragonflies by Random Amplified Polymorphic DNA fingerprinting.
Molecular ecology 1993;2(2):79-87.
1993: M Dick; D M Bridge; Ward C Wheeler; Rob DeSalle
Collection and storage of invertebrate samples.
Methods in enzymology 1993;224():51-65.
1993: Rob DeSalle; A K Williams; M George
Isolation and characterization of animal mitochondrial DNA.
Methods in enzymology 1993;224():176-204.
1992: Rob DeSalle; John Gatesy; W Wheeler; D Grimaldi
DNA sequences from a fossil termite in Oligo-Miocene amber and their phylogenetic implications.
Science (New York, N.Y.) 1992;257(5078):1933-6.
1992: D Bridge; C W Cunningham; B Schierwater; Rob DeSalle; Leo W Buss
Class-level relationships in the phylum Cnidaria: evidence from mitochondrial genome structure.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(18):8750-3.
1992: Rob DeSalle; D Grimaldi
Characters and the systematics of Drosophilidae.
The Journal of heredity 1992;83(3):182-8.
1992: John Gatesy; D Yelon; Rob DeSalle; E S Vrba
Phylogeny of the Bovidae (Artiodactyla, Mammalia), based on mitochondrial ribosomal DNA sequences.
Molecular biology and evolution 1992;9(3):433-46.
1992: Rob DeSalle; Alan R Templeton
The mtDNA genealogy of closely related Drosophila silvestris.
The Journal of heredity 1992;83(3):211-6.
1992: Rob DeSalle
The phylogenetic relationships of flies in the family Drosophilidae deduced from mtDNA sequences.
Molecular phylogenetics and evolution 1992;1(1):31-40.
1992: H Hollocher; Alan R Templeton; Rob DeSalle; J S Johnston
The molecular through ecological genetics of abnormal abdomen. IV. Components of genetic variation in a natural population of Drosophila mercatorum.
Genetics 1992;130(2):355-66.
1987: Rob DeSalle; J A Hunt
Molecular evolution in Hawaiian drosophilids.
Trends in ecology & evolution 1987;2(7):212-6.
1987: Rob DeSalle; A Templeton; I Mori; S Pletscher; J S Johnston
Temporal and spatial heterogeneity of mtDNA polymorphisms in natural populations of Drosophila mercatorum.
Genetics 1987;116(2):215-23.
1986: Rob DeSalle; L V Giddings
Discordance of nuclear and mitochondrial DNA phylogenies in Hawaiian Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 1986;83(18):6902-6.
1986: Rob DeSalle; Alan R Templeton
The molecular through ecological genetics of abnormal abdomen. III. Tissue-specific differential replication of ribosomal genes modulates the abnormal abdomen phenotype in Drosophila mercatorum.
Genetics 1986;112(4):877-86.
1986: Rob DeSalle; L V Giddings; K Y Kaneshiro
Mitochondrial DNA variability in natural populations of Hawaiian Drosophila. II. Genetic and phylogenetic relationships of natural populations of D. silvestris and D. heteroneura.
Heredity 1986;56 ( Pt 1)():87-96.
1986: Rob DeSalle; L V Giddings; Alan R Templeton
Mitochondrial DNA variability in natural populations of Hawaiian Drosophila. I. Methods and levels of variability in D. silvestris and D. heteroneura populations.
Heredity 1986;56 ( Pt 1)():75-85.