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Richard Dickerson

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TOP 3
Richard E Dickerson
Chapter 2: myoglobin: a whale of a structure!
Ann E Maris; Maria Kaczor-Grzeskowiak; Zhongcai Ma; Mary L Kopka; Robert P Gunsalus; Richard E Dickerson
Primary and secondary modes of DNA recognition by the NarL two-component response regulator.
Mary L Kopka; Laurence Lavelle; Gye Won Han; Ho Leung Ng; Richard E Dickerson
An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.

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All Publications

2009: Richard E Dickerson
Chapter 2: myoglobin: a whale of a structure!
Journal of molecular biology 2009;392(1):10-23.
2005: Ann E Maris; Maria Kaczor-Grzeskowiak; Zhongcai Ma; Mary L Kopka; Robert P Gunsalus; Richard E Dickerson
Primary and secondary modes of DNA recognition by the NarL two-component response regulator.
Biochemistry 2005;44(44):14538-52.
2003: Mary L Kopka; Laurence Lavelle; Gye Won Han; Ho Leung Ng; Richard E Dickerson
An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.
Journal of molecular biology 2003;334(4):653-65.
2003: Gye Won Han; Mary L Kopka; David Langs; Michael Sawaya; Richard E Dickerson
Crystal structure of an RNA.DNA hybrid reveals intermolecular intercalation: dimer formation by base-pair swapping.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(16):9214-9.
2002: Ann E Maris; Michael Sawaya; Maria Kaczor-Grzeskowiak; Michael R Jarvis; Shawn M D Bearson; Mary L Kopka; Imke Schröder; Robert P Gunsalus; Richard E Dickerson
Dimerization allows DNA target site recognition by the NarL response regulator.
Nature structural biology 2002;9(10):771-8.
2002: Ho Leung Ng; Richard E Dickerson
Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.
Nucleic acids research 2002;30(18):4061-7.
2002: Thang Kien Chiu; Catherine Sohn; Richard E Dickerson; Reid C Johnson
Testing water-mediated DNA recognition by the Hin recombinase.
The EMBO journal 2002;21(4):801-14.
2002: C Caroline O'Hare; Darcy Mack; Manju Tandon; Sanjay K Sharma; J William Lown; Mary L Kopka; Richard E Dickerson; John A Hartley
DNA sequence recognition in the minor groove by crosslinked polyamides: The effect of N-terminal head group and linker length on binding affinity and specificity.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(1):72-7.
2001: D R Mack; Thang Kien Chiu; Richard E Dickerson
Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts.
Journal of molecular biology 2001;312(5):1037-49.
2001: Richard E Dickerson; Ho Leung Ng
DNA structure from A to B.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(13):6986-8.
2001: Hwee Ng; Richard E Dickerson
Mildly eccentric 'E-DNA'.
Nature structural biology 2001;8(2):107-8.
2000: Thang Kien Chiu; Richard E Dickerson
1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
Journal of molecular biology 2000;301(4):915-45.
2000: Ho Leung Ng; Mary L Kopka; Richard E Dickerson
The structure of a stable intermediate in the A <--> B DNA helix transition.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(5):2035-9.
1999: Thang Kien Chiu; Maria Kaczor-Grzeskowiak; Richard E Dickerson
Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Journal of molecular biology 1999;292(3):589-608.
1998: I Baikalov; Richard E Dickerson
Molecular replacement using DNA helical symmetry.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 3):324-33.
1998: WL Walker; Elliot M Landaw; Richard E Dickerson; DS Goodsell
The theoretical limits of DNA sequence discrimination by linked polyamides.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(8):4315-20.
1998: I Baikalov; Imke Schröder; Maria Kaczor-Grzeskowiak; Duilio Cascio; Robert P Gunsalus; Richard E Dickerson
NarL dimerization? Suggestive evidence from a new crystal form.
Biochemistry 1998;37(11):3665-76.
1997: WL Walker; Mary L Kopka; Richard E Dickerson; DS Goodsell
Design of stapled DNA-minor-groove-binding molecules with a mutable atom simulated annealing method.
Journal of computer-aided molecular design 1997;11(6):539-46.
1997: Richard E Dickerson
Obituary: Irving Geis, 1908-1997.
Structure (London, England : 1993) 1997;5(9):1247-9.
1997: Mary L Kopka; DS Goodsell; Gye Won Han; Thang Kien Chiu; J William Lown; Richard E Dickerson
Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G.
Structure (London, England : 1993) 1997;5(8):1033-46.
1997: Gye Won Han; Mary L Kopka; Duilio Cascio; Kazimierz Grzeskowiak; Richard E Dickerson
Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis.
Journal of molecular biology 1997;269(5):811-26.
1997: WL Walker; Elliot M Landaw; Richard E Dickerson; DS Goodsell
Estimation of the DNA sequence discriminatory ability of hairpin-linked lexitropsins.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(11):5634-9.
1997: Richard E Dickerson; Thang Kien Chiu
Helix bending as a factor in protein/DNA recognition.
Biopolymers 1997;44(4):361-403.
1996: M E Filipowsky; Mary L Kopka; M Brazil-Zison; J W Lown; Richard E Dickerson
Linked lexitropsins and the in vitro inhibition of HIV-1 reverse transcriptase RNA-directed DNA polymerization: a novel induced-fit of 3,5 m-pyridyl bisdistamycin to enzyme-associated template-primer.
Biochemistry 1996;35(48):15397-410.
1996: I Baikalov; Imke Schröder; Maria Kaczor-Grzeskowiak; K Grzeskowiak; Robert P Gunsalus; Richard E Dickerson
Structure of the Escherichia coli response regulator NarL.
Biochemistry 1996;35(34):11053-61.
1996: Z S Juo; Thang Kien Chiu; P M Leiberman; I Baikalov; Arnold J Berk; Richard E Dickerson
How proteins recognize the TATA box.
Journal of molecular biology 1996;261(2):239-54.
1996: Richard E Dickerson; D Goodsell; Mary L Kopka
MPD and DNA bending in crystals and in solution.
Journal of molecular biology 1996;256(1):108-25.
1995: D S Goodsell; Ho Leung Ng; Mary L Kopka; J W Lown; Richard E Dickerson
Structure of a dicationic monoimidazole lexitropsin bound to DNA.
Biochemistry 1995;34(51):16654-61.
1995: WL Walker; Mary L Kopka; M E Filipowsky; Richard E Dickerson; D S Goodsell
Design of B-DNA cross-linking and sequence-reading molecules.
Biopolymers 1995;35(5):543-53.
1995: D S Goodsell; Mary L Kopka; Richard E Dickerson
Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation.
Biochemistry 1995;34(15):4983-93.
1995: D S Goodsell; K Grzeskowiak; Richard E Dickerson
Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction.
Biochemistry 1995;34(3):1022-9.
1994: Mary L Kopka; D S Goodsell; I Baikalov; K Grzeskowiak; Duilio Cascio; Richard E Dickerson
Crystal structure of a covalent DNA-drug adduct: anthramycin bound to C-C-A-A-C-G-T-T-G-G and a molecular explanation of specificity.
Biochemistry 1994;33(46):13593-610.
1994: D S Goodsell; Maria Kaczor-Grzeskowiak; Richard E Dickerson
The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
Journal of molecular biology 1994;239(1):79-96.
1994: Richard E Dickerson; D S Goodsell; S Neidle
"...the tyranny of the lattice...".
Proceedings of the National Academy of Sciences of the United States of America 1994;91(9):3579-83.
1994: J A Feng; Reid C Johnson; Richard E Dickerson
Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions.
Science (New York, N.Y.) 1994;263(5145):348-55.
1993: K Grzeskowiak; D S Goodsell; Maria Kaczor-Grzeskowiak; Duilio Cascio; Richard E Dickerson
Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA.
Biochemistry 1993;32(34):8923-31.
1993: J A Feng; M Simon; D P Mack; Peter B Dervan; Reid C Johnson; Richard E Dickerson
Crystallization and preliminary X-ray analysis of the DNA binding domain of the Hin recombinase with its DNA binding site.
Journal of molecular biology 1993;232(3):982-6.
1993: I Baikalov; K Grzeskowiak; K Yanagi; J Quintana; Richard E Dickerson
The crystal structure of the trigonal decamer C-G-A-T-C-G-6meA-T-C-G: a B-DNA helix with 10.6 base-pairs per turn.
Journal of molecular biology 1993;231(3):768-84.
1993: D S Goodsell; Mary L Kopka; Duilio Cascio; Richard E Dickerson
Crystal structure of CATGGCCATG and its implications for A-tract bending models.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(7):2930-4.
1993: A Lipanov; Mary L Kopka; Maria Kaczor-Grzeskowiak; J Quintana; Richard E Dickerson
Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA.
Biochemistry 1993;32(5):1373-89.
1992: H Yuan; J Quintana; Richard E Dickerson
Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G.
Biochemistry 1992;31(34):8009-21.
1992: J R Quintana; K Grzeskowiak; K Yanagi; Richard E Dickerson
Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G.
Journal of molecular biology 1992;225(2):379-95.
1991: Hanna S Yuan; S E Finkel; J A Feng; Maria Kaczor-Grzeskowiak; Reid C Johnson; Richard E Dickerson
The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(21):9558-62.
1991: J R Quintana; A A Lipanov; Richard E Dickerson
Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Biochemistry 1991;30(42):10294-306.
1991: K Grzeskowiak; K Yanagi; Gilbert G Privé; Richard E Dickerson
The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals.
The Journal of biological chemistry 1991;266(14):8861-83.
1991: T A Larsen; Mary L Kopka; Richard E Dickerson
Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG.
Biochemistry 1991;30(18):4443-9.
1991: K Yanagi; Gilbert G Privé; Richard E Dickerson
Analysis of local helix geometry in three B-DNA decamers and eight dodecamers.
Journal of molecular biology 1991;217(1):201-14.
1991: Gilbert G Privé; K Yanagi; Richard E Dickerson
Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
Journal of molecular biology 1991;217(1):177-99.
1990: A A Lipanov; J Quintana; Richard E Dickerson
Disordered single crystal evidence for a quadruple helix formed by guanosine 5'-monophosphate.
Journal of biomolecular structure & dynamics 1990;8(3):483-9.
1990: I G Panyutin; O I Kovalsky; E I Budowsky; Richard E Dickerson; M E Rikhirev; A A Lipanov
G-DNA: a twice-folded DNA structure adopted by single-stranded oligo(dG) and its implications for telomeres.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(3):867-70.
1990: R Chattopadhyaya; K Grzeskowiak; Richard E Dickerson
Structure of a T4 hairpin loop on a Z-DNA stem and comparison with A-RNA and B-DNA loops.
Journal of molecular biology 1990;211(1):189-210.
1989: T A Larsen; D S Goodsell; Duilio Cascio; K Grzeskowiak; Richard E Dickerson
The structure of DAPI bound to DNA.
Journal of biomolecular structure & dynamics 1989;7(3):477-91.
1989: Richard E Dickerson
Definitions and nomenclature of nucleic acid structure parameters.
Journal of biomolecular structure & dynamics 1989;6(4):627-34.
1988: C Yoon; Gilbert G Privé; D S Goodsell; Richard E Dickerson
Structure of an alternating-B DNA helix and its relationship to A-tract DNA.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(17):6332-6.
1988: R Chattopadhyaya; S Ikuta; K Grzeskowiak; Richard E Dickerson
X-ray structure of a DNA hairpin molecule.
Nature 1988;334(6178):175-9.
1987: Richard E Dickerson; D S Goodsell; Mary L Kopka; P E Pjura
The effect of crystal packing on oligonucleotide double helix structure.
Journal of biomolecular structure & dynamics 1987;5(3):557-79.
1987: Gilbert G Privé; U Heinemann; Srinivasan Chandrasegaran; L S Kan; Mary L Kopka; Richard E Dickerson
Helix geometry, hydration, and G.A mismatch in a B-DNA decamer.
Science (New York, N.Y.) 1987;238(4826):498-504.
1987: P E Pjura; K Grzeskowiak; Richard E Dickerson
Binding of Hoechst 33258 to the minor groove of B-DNA.
Journal of molecular biology 1987;197(2):257-71.
1986: S Ikuta; R Chattopadhyaya; H Ito; Richard E Dickerson; D R Kearns
NMR study of a synthetic DNA hairpin.
Biochemistry 1986;25(17):4840-9.
1985: Richard E Dickerson; Mary L Kopka
Nuclear Overhauser data and stereochemical considerations suggest that netropsin binds symmetrically within the minor groove of poly(dA).poly(dT), forming hydrogen bonds with both strands of the double helix.
Journal of biomolecular structure & dynamics 1985;3(3):423-31.
1985: Mary L Kopka; C Yoon; D Goodsell; P Pjura; Richard E Dickerson
Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
Journal of molecular biology 1985;183(4):553-63.
1985: Mary L Kopka; C Yoon; D Goodsell; P Pjura; Richard E Dickerson
The molecular origin of DNA-drug specificity in netropsin and distamycin.
Proceedings of the National Academy of Sciences of the United States of America 1985;82(5):1376-80.
1984: R M Wing; P Pjura; H R Drew; Richard E Dickerson
The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G.
The EMBO journal 1984;3(5):1201-6.
1984: B N Conner; C Yoon; J L Dickerson; Richard E Dickerson
Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G.
Journal of molecular biology 1984;174(4):663-95.
1983: Richard E Dickerson; Mary L Kopka; P Pjura
A random-walk model for helix bending in B-DNA.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(23):7099-103.
1983: Richard E Dickerson; Mary L Kopka; P Pjura
A stochastic model for helix bending in B-DNA.
Journal of biomolecular structure & dynamics 1983;1(3):755-71.
1983: Mary L Kopka; A V Fratini; H R Drew; Richard E Dickerson
Ordered water structure around a B-DNA dodecamer. A quantitative study.
Journal of molecular biology 1983;163(1):129-46.
1982: A V Fratini; Mary L Kopka; H R Drew; Richard E Dickerson
Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
The Journal of biological chemistry 1982;257(24):14686-707.
1982: Richard E Dickerson; H R Drew; B N Conner; R M Wing; A V Fratini; Mary L Kopka
The anatomy of A-, B-, and Z-DNA.
Science (New York, N.Y.) 1982;216(4545):475-85.
1982: B N Conner; T Takano; S Tanaka; K Itakura; Richard E Dickerson
The molecular structure of d(ICpCpGpG), a fragment of right-handed double helical A-DNA.
Nature 1982;295(5847):294-9.
1981: H R Drew; R M Wing; T Takano; C Broka; S Tanaka; K Itakura; Richard E Dickerson
Structure of a B-DNA dodecamer: conformation and dynamics.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(4):2179-83.