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Robert Dodson

Research Profile

Genes & Molecular Sequences

Concepts & Ideas

Procedures

Sequence Analysis, DNA

Chemicals & Drugs

Living Beings

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Publications

TOP 3
Lauren M Brinkac; Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Elisabet Caler; Robert J Dodson; A Scott Durkin; Derek M Harkins; Hernan Lorenzi; Ramana Madupu; Yinong Sebastian; Susmita Shrivastava; Mathangi Thiagarajan; Joshua Orvis; Jaideep P Sundaram; Jonathon Crabtree; Kevin Galens; Yongmei Zhao; Jason M Inman; Robert Montgomery; Seth Schobel; Kevin Galinsky; David M Tanenbaum; Adam Resnick; Nikhat Zafar; Owen R White; Granger Sutton
Pathema: a clade-specific bioinformatics resource center for pathogen research.
Derrick E Fouts; Heather L Tyler; Robert T DeBoy; Sean Daugherty; Qinghu Ren; Jonathan H Badger; Anthony S Durkin; Heather Huot; Susmita Shrivastava; Sagar Kothari; Robert J Dodson; Yasmin Mohamoud; Hoda Khouri; Luiz F W Roesch; Karen A Krogfelt; Carsten Struve; Eric W Triplett; Barbara A Methé
Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice.
Jonathan H Badger; Timothy R Hoover; Yves V Brun; Ronald M Weiner; Michael T Laub; Gladys Alexandre; Jan Mrázek; Qinghu Ren; Ian Paulsen; Karen E Nelson; Hoda Khouri; Diana Radune; Julia Sosa; Robert J Dodson; Steven A Sullivan; Mary J Rosovitz; Ramana Madupu; Lauren M Brinkac; A Scott Durkin; Sean C Daugherty; Sagar P Kothari; Michelle G Giglio; Liwei Zhou; Daniel H Haft; Jeremy D Selengut; Tanja M Davidsen; Qi Yang; Nikhat Zafar; Naomi L Ward
Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.

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All Publications

2010: Lauren M Brinkac; Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Elisabet Caler; Robert J Dodson; A Scott Durkin; Derek M Harkins; Hernan Lorenzi; Ramana Madupu; Yinong Sebastian; Susmita Shrivastava; Mathangi Thiagarajan; Joshua Orvis; Jaideep P Sundaram; Jonathon Crabtree; Kevin Galens; Yongmei Zhao; Jason M Inman; Robert Montgomery; Seth Schobel; Kevin Galinsky; David M Tanenbaum; Adam Resnick; Nikhat Zafar; Owen R White; Granger Sutton
Pathema: a clade-specific bioinformatics resource center for pathogen research.
Nucleic acids research 2010;38(Database issue):D408-14.
2008: Derrick E Fouts; Heather L Tyler; Robert T DeBoy; Sean Daugherty; Qinghu Ren; Jonathan H Badger; Anthony S Durkin; Heather Huot; Susmita Shrivastava; Sagar Kothari; Robert J Dodson; Yasmin Mohamoud; Hoda Khouri; Luiz F W Roesch; Karen A Krogfelt; Carsten Struve; Eric W Triplett; Barbara A Methé
Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice.
PLoS genetics 2008;4(7):e1000141.
2006: Jonathan H Badger; Timothy R Hoover; Yves V Brun; Ronald M Weiner; Michael T Laub; Gladys Alexandre; Jan Mrázek; Qinghu Ren; Ian Paulsen; Karen E Nelson; Hoda Khouri; Diana Radune; Julia Sosa; Robert J Dodson; Steven A Sullivan; Mary J Rosovitz; Ramana Madupu; Lauren M Brinkac; A Scott Durkin; Sean C Daugherty; Sagar P Kothari; Michelle G Giglio; Liwei Zhou; Daniel H Haft; Jeremy D Selengut; Tanja M Davidsen; Qi Yang; Nikhat Zafar; Naomi L Ward
Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.
Journal of bacteriology 2006;188(19):6841-50.
2006: Brian Palenik; Qinghu Ren; Chris L Dupont; Garry S A Myers; John F Heidelberg; Jonathan H Badger; Ramana Madupu; William C Nelson; Lauren M Brinkac; Robert J Dodson; A Scott Durkin; Sean C Daugherty; Steven A Sullivan; Hoda Khouri; Yasmin Mohamoud; Rebecca Halpin; Ian Paulsen
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(36):13555-9.
2005: Martin Wu; Qinghu Ren; A Scott Durkin; Sean C Daugherty; Lauren M Brinkac; Robert J Dodson; Ramana Madupu; Steven A Sullivan; James F Kolonay; Daniel H Haft; William C Nelson; Luke J Tallon; Kristine M Jones; Luke E Ulrich; Juan M Gonzalez; Igor B Zhulin; Frank Thomson Robb; Jonathan Eisen
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.
PLoS genetics 2005;1(5):e65.
2005: Barbara A Methé; Karen E Nelson; Jody W Deming; Bahram Momen; Eugene Melamud; Xijun Zhang; John Moult; Ramana Madupu; William C Nelson; Robert J Dodson; Lauren M Brinkac; Sean C Daugherty; A Scott Durkin; Robert T Deboy; James F Kolonay; Steven A Sullivan; Liwei Zhou; Tanja M Davidsen; Martin Wu; Adrienne L Huston; Matthew Lewis; Bruce Weaver; Janice Weidman; Hoda Khouri; Teresa Utterback; Tamara Feldblyum; Claire M Fraser-Liggett
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(31):10913-8.
2005: Ian Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T Deboy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Steven A Sullivan; Mary J Rosovitz; Michelle G Giglio; Liwei Zhou; Davd J Schneider; Samuel Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Nature biotechnology 2005;23(7):873-8.
2005: Steven R Gill; Derrick E Fouts; Gordon L Archer; Emmanuel F Mongodin; Robert T Deboy; Jacques Ravel; Ian Paulsen; James F Kolonay; Lauren M Brinkac; Maureen J Beanan; Robert J Dodson; Sean C Daugherty; Ramana Madupu; Samuel V Angiuoli; A Scott Durkin; Daniel H Haft; Jessica Vamathevan; Hoda Khouri; Teresa Utterback; Chris Lee; George Dimitrov; Lingxia Jiang; Haiying Qin; Janice Weidman; Kevin Tran; Kathy Kang; Ioana R Hance; Karen E Nelson; Claire M Fraser-Liggett
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.
Journal of bacteriology 2005;187(7):2426-38.
2005: Rekha Seshadri; Lorenz Adrian; Derrick E Fouts; Jonathan Eisen; Adam M Phillippy; Barbara A Methe; Naomi L Ward; William C Nelson; Robert T Deboy; Hoda Khouri; James F Kolonay; Robert J Dodson; Sean C Daugherty; Lauren M Brinkac; Steven A Sullivan; Ramana Madupu; Karen E Nelson; Katherine H Kang; Marjorie Impraim; Kevin Tran; Jeffrey M Robinson; Heather A Forberger; Claire M Fraser-Liggett; Stephen H Zinder; John F Heidelberg
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.
Science (New York, N.Y.) 2005;307(5706):105-8.
2005: Derrick E Fouts; Emmanuel F Mongodin; Robert Mandrell; William G Miller; David Rasko; Jacques Ravel; Lauren M Brinkac; Robert T Deboy; Craig T Parker; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Ramana Madupu; Steven A Sullivan; Jyoti U Shetty; Mobolanle A Ayodeji; Alla Shvartsbeyn; Michael C Schatz; Jonathan H Badger; Claire M Fraser-Liggett; Karen E Nelson
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.
PLoS biology 2005;3(1):e15.
2003: Karen E Nelson; Robert D Fleischmann; Robert T Deboy; Ian Paulsen; Derrick E Fouts; Jonathan Eisen; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Michelle G Giglio; Daniel H Haft; James F Kolonay; William C Nelson; Tanya Mason; Luke J Tallon; Jessica Gray; David Granger; Hervé Tettelin; Hong Dong; Jamie L Galvin; Margaret J Duncan; Floyd E Dewhirst; Claire M Fraser-Liggett
Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.
Journal of bacteriology 2003;185(18):5591-601.
2003: Rekha Seshadri; Ian Paulsen; Jonathan Eisen; Timothy D Read; Karen E Nelson; William C Nelson; Naomi L Ward; Hervé Tettelin; Tanja M Davidsen; Maureen J Beanan; Robert T Deboy; Sean C Daugherty; Lauren M Brinkac; Ramana Madupu; Robert J Dodson; Hoda Khouri; Kathy H Lee; Heather A Carty; David Scanlan; Robert A Heinzen; Herbert A Thompson; James E Samuel; Claire M Fraser-Liggett; John F Heidelberg
Complete genome sequence of the Q-fever pathogen Coxiella burnetii.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):5455-60.
2002: Robert D Fleischmann; David Alland; Jonathan Eisen; L Carpenter; Owen R White; J Peterson; Robert T Deboy; Robert J Dodson; Michelle G Giglio; Daniel H Haft; EK Hickey; James F Kolonay; William C Nelson; Lowell Umayam; Maria D Ermolaeva; Steven L Salzberg; Arthur L Delcher; Teresa Utterback; Janice Weidman; Hoda Khouri; J Gill; A Mikula; William R Bishai; W R Jacobs Jr; J Craig Venter; Claire M Fraser-Liggett
Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.
Journal of bacteriology 2002;184(19):5479-90.
2000: Timothy D Read; Robert brunham; C Shen; Steven R Gill; John F Heidelberg; Owen R White; EK Hickey; J Peterson; Teresa Utterback; K Berry; S Bass; K Linher; Janice Weidman; Hoda Khouri; B Craven; C Bowman; Robert J Dodson; Michelle G Giglio; W Nelson; Robert T Deboy; James F Kolonay; Grant McClarty; Steven L Salzberg; Jonathan Eisen; Claire M Fraser-Liggett
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.
Nucleic acids research 2000;28(6):1397-406.
2000: Sherwood Casjens; N Palmer; R van Vugt; Wai Mun Huang; Brian Stevenson; Patricia Rosa; Raju Lathigra; Granger Sutton; J Peterson; Robert J Dodson; Daniel H Haft; E Hickey; Michelle G Giglio; Owen R White; Claire M Fraser-Liggett
A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi.
Molecular microbiology 2000;35(3):490-516.
1999: Karen E Nelson; RA Clayton; Steven R Gill; Michelle G Giglio; Robert J Dodson; Daniel H Haft; EK Hickey; J D Peterson; William C Nelson; KA Ketchum; L McDonald; Teresa Utterback; JA Malek; K D Linher; M M Garrett; A M Stewart; M D Cotton; M S Pratt; C A Phillips; D Richardson; John F Heidelberg; Granger Sutton; Robert D Fleischmann; Jonathan Eisen; Owen R White; Steven L Salzberg; Hamilton O Smith; J Craig Venter; Claire M Fraser-Liggett
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
Nature 1999;399(6734):323-9.
1997: D G George; Robert J Dodson; JS Garavelli; Daniel H Haft; LT Hunt; CR Marzec; Bruce C Orcutt; K E Sidman; GY Srinivasarao; Lai-Su L Yeh; Leslie Arminski; Robert S Ledley; Akira Tsugita; Winona C Barker
The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database.
Nucleic acids research 1997;25(1):24-8.