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Timothy Donohue

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Tae-Wook Nam; Eva C Ziegelhoffer; Rachelle A S Lemke; Timothy J Donohue
Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen.
Wayne S Kontur; Kurt Labutti; Joel Martin; Daniel R Noguera; Christa Pennacchio; Wendy Schackwitz; Erica Sodergren; Hope N Tice; George M Weinstock; Shweta Deshpande; Natalia Ivanova; Timothy J Donohue
Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.
Yann S Dufour; Heather A Green; Saheed Imam; Byoung-Mo Koo; Timothy J Donohue
Convergence of the transcriptional responses to heat shock and singlet oxygen stresses.

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All Publications

2013: Tae-Wook Nam; Eva C Ziegelhoffer; Rachelle A S Lemke; Timothy J Donohue
Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen.
mBio 2013;4(1):e00541-12.
2012: Wayne S Kontur; Kurt Labutti; Joel Martin; Daniel R Noguera; Christa Pennacchio; Wendy Schackwitz; Erica Sodergren; Hope N Tice; George M Weinstock; Shweta Deshpande; Natalia Ivanova; Timothy J Donohue
Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome.
Journal of bacteriology 2012;194(24):7016-7.
2012: Yann S Dufour; Heather A Green; Saheed Imam; Byoung-Mo Koo; Timothy J Donohue
Convergence of the transcriptional responses to heat shock and singlet oxygen stresses.
PLoS genetics 2012;8(9):e1002929.
2012: Min-Sik Kim; Kang-Lok Lee; Gi-Baeg Nam; Joo-Hong Park; Yoo-Bok Cho; Timothy J Donohue; Yann S Dufour; Hae Min Kim; Ji Sun Yoo; Jung-Hye Roe
Conservation of thiol-oxidative stress responses regulated by SigR orthologues in actinomycetes.
Molecular microbiology 2012;85(2):326-44.
2012: Wayne S Kontur; Daniel R Noguera; Timothy J Donohue
Maximizing reductant flow into microbial H2 production.
Current opinion in biotechnology 2012;23(3):382-9.
2011: Wayne S Kontur; Daniel R Noguera; Melanie A Spero; Eva C Ziegelhoffer; Saheed Imam; Timothy J Donohue
Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.
Applied and environmental microbiology 2011;77(20):7425-9.
2011: Saheed Imam; Daniel R Noguera; Jennifer L Reed; Ugur Sohmen; Safak Yilmaz; Alexander S Gorzalski; Timothy J Donohue
iRsp1095: a genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network.
BMC systems biology 2011;5():116.
2010: Garret Suen; Jarrod J Scott; Frank O Aylward; Sandra M Adams; Susannah G Tringe; Adrián A Pinto-Tomás; Clifton E Foster; Markus Pauly; Paul J Weimer; Kerrie W Barry; Lynne A Goodwin; Pascal Bouffard; Lewyn Li; Jolene Osterberger; Timothy T Harkins; Steven C Slater; Timothy J Donohue; Cameron R Currie
An insect herbivore microbiome with high plant biomass-degrading capacity.
PLoS genetics 2010;6(9):.
2010: Yann S Dufour; Patricia J Kiley; Timothy J Donohue
Reconstruction of the core and extended regulons of global transcription factors.
PLoS genetics 2010;6(7):e1001027.
2010: Yann S Dufour; Gary E Wesenberg; Andrew J Tritt; Jeremy D Glasner; Nicole T Perna; Julie C Mitchell; Timothy J Donohue
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.
Nucleic acids research 2010;38(Web Server issue):W321-5.
2010: Yanling Wang; Yann S Dufour; Hans K Carlson; Timothy J Donohue; Michael A Marletta; Edward G Ruby
H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(18):8375-80.
2009: Eva C Ziegelhoffer; Timothy J Donohue
Bacterial responses to photo-oxidative stress.
Nature reviews. Microbiology 2009;7(12):856-63.
2009: Timothy J Donohue
Targeted sigma factor turnover inserts negative control into a positive feedback loop.
Molecular microbiology 2009;73(5):747-50.
2008: Yann S Dufour; Robert Landick; Timothy J Donohue
Organization and evolution of the biological response to singlet oxygen stress.
Journal of molecular biology 2008;383(3):713-30.
2008: Xiuxia Du; Stephen J Callister; Nathan P Manes; Joshua N Adkins; Roxana A Alexandridis; Xiaohua Zeng; Jung Hyeob Roh; William E Smith; Timothy J Donohue; samuel kaplan; Richard D Smith; Mary S Lipton
A computational strategy to analyze label-free temporal bottom-up proteomics data.
Journal of proteome research 2008;7(7):2595-604.
2008: Shondelle M Wilson; Marshall P Gleisten; Timothy J Donohue
Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides.
Microbiology (Reading, England) 2008;154(Pt 1):296-305.
2007: Xiaohua Zeng; Jung Hyeob Roh; Stephen J Callister; Christine L Tavano; Timothy J Donohue; Mary S Lipton; samuel kaplan
Proteomic characterization of the Rhodobacter sphaeroides 2.4.1 photosynthetic membrane: identification of new proteins.
Journal of bacteriology 2007;189(20):7464-74.
2007: Elizabeth A Campbell; Roger Greenwell; Jennifer R Anthony; Sheng Wang; Lionel Lim; Kalyan Das; Heidi Sofia; Timothy J Donohue; Seth A Darst
A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria.
Molecular cell 2007;27(5):793-805.
2006: Christine L Tavano; Timothy J Donohue
Development of the bacterial photosynthetic apparatus.
Current opinion in microbiology 2006;9(6):625-31.
2006: Stephen J Callister; Carrie D Nicora; Xiaohua Zeng; Jung Hyeob Roh; Miguel A Dominguez; Christine L Tavano; Matthew Monroe; samuel kaplan; Timothy J Donohue; Richard D Smith; Mary S Lipton
Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes.
Journal of microbiological methods 2006;67(3):424-36.
2006: Stephen J Callister; Miguel A Dominguez; Carrie D Nicora; Xiaohua Zeng; Christine L Tavano; samuel kaplan; Timothy J Donohue; Richard D Smith; Mary S Lipton
Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures.
Journal of proteome research 2006;5(8):1940-7.
2006: Heather A Green; Timothy J Donohue
Activity of Rhodobacter sphaeroides RpoHII, a second member of the heat shock sigma factor family.
Journal of bacteriology 2006;188(16):5712-21.
2006: Cédric Laguri; Rachelle A Stenzel; Timothy J Donohue; Mary K Phillips-Jones; Michael P Williamson
Activation of the global gene regulator PrrA (RegA) from Rhodobacter sphaeroides.
Biochemistry 2006;45(25):7872-81.
2006: Britton Ranson-Olson; Denise F Jones; Timothy J Donohue; Jill H Zeilstra-Ryalls
In vitro and in vivo analysis of the role of PrrA in Rhodobacter sphaeroides 2.4.1 hemA gene expression.
Journal of bacteriology 2006;188(9):3208-18.
2005: Denise F Jones; Rachelle A Stenzel; Timothy J Donohue
Mutational analysis of the C-terminal domain of the Rhodobacter sphaeroides response regulator PrrA.
Microbiology (Reading, England) 2005;151(Pt 12):4103-10.
2005: Christine L Tavano; Angela M Podevels; Timothy J Donohue
Identification of genes required for recycling reducing power during photosynthetic growth.
Journal of bacteriology 2005;187(15):5249-58.
2005: Jennifer R Anthony; Kristin L Warczak; Timothy J Donohue
A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(18):6502-7.
2004: Jason W Hickman; Vernon C Witthuhn; Miguel Dominguez; Timothy J Donohue
Positive and negative transcriptional regulators of glutathione-dependent formaldehyde metabolism.
Journal of bacteriology 2004;186(23):7914-25.
2004: Timothy J Donohue; Christopher M Thomas
Policy proposal for publication of papers with data sets from genome-wide studies.
Microbiology (Reading, England) 2004;150(Pt 11):3521-2.
2004: Jennifer R Anthony; Jack D Newman; Timothy J Donohue
Interactions between the Rhodobacter sphaeroides ECF sigma factor, sigma(E), and its anti-sigma factor, ChrR.
Journal of molecular biology 2004;341(2):345-60.
2004: Christine L Tavano; James C Comolli; Timothy J Donohue
The role of dor gene products in controlling the P2 promoter of the cytochrome c2 gene, cycA, in Rhodobacter sphaeroides.
Microbiology (Reading, England) 2004;150(Pt 6):1893-9.
2004: James C Comolli; Timothy J Donohue
Differences in two Pseudomonas aeruginosa cbb3 cytochrome oxidases.
Molecular microbiology 2004;51(4):1193-203.
2003: Jennifer R Anthony; Heather A Green; Timothy J Donohue
Purification of Rhodobacter sphaeroides RNA polymerase and its sigma factors.
Methods in enzymology 2003;370():54-65.
2003: Carlos Rios-Velazquez; Ryan Coller; Timothy J Donohue
Features of Rhodobacter sphaeroides CcmFH.
Journal of bacteriology 2003;185(2):422-31.
2002: James C Comolli; Timothy J Donohue
Pseudomonas aeruginosa RoxR, a response regulator related to Rhodobacter sphaeroides PrrA, activates expression of the cyanide-insensitive terminal oxidase.
Molecular microbiology 2002;45(3):755-68.
2002: Jason W Hickman; Rob Barber; Eric P Skaar; Timothy J Donohue
Link between the membrane-bound pyridine nucleotide transhydrogenase and glutathione-dependent processes in Rhodobacter sphaeroides.
Journal of bacteriology 2002;184(2):400-9.
2001: Jack D Newman; Jennifer R Anthony; Timothy J Donohue
The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor.
Journal of molecular biology 2001;313(3):485-99.
2001: R L Cox; C Patterson; Timothy J Donohue
Roles for the Rhodobacter sphaeroides CcmA and CcmG proteins.
Journal of bacteriology 2001;183(15):4643-7.
2001: C Ríos-Velázquez; R L Cox; Timothy J Donohue
Characterization of Rhodobacter sphaeroides cytochrome c(2) proteins with altered heme attachment sites.
Archives of biochemistry and biophysics 2001;389(2):234-44.
1999: Jack D Newman; M J Falkowski; Brenda Schilke; Larry C Anthony; Timothy J Donohue
The Rhodobacter sphaeroides ECF sigma factor, sigma(E), and the target promoters cycA P3 and rpoE P1.
Journal of molecular biology 1999;294(2):307-20.
1999: RK Karls; J R Wolf; Timothy J Donohue
Activation of the cycA P2 promoter for the Rhodobacter sphaeroides cytochrome c2 gene by the photosynthesis response regulator.
Molecular microbiology 1999;34(4):822-35.
1999: Y He; Tamas Gaal; RK Karls; Timothy J Donohue; Richard L Gourse; Gary P Roberts
Transcription activation by CooA, the CO-sensing factor from Rhodospirillum rubrum. The interaction between CooA and the C-terminal domain of the alpha subunit of RNA polymerase.
The Journal of biological chemistry 1999;274(16):10840-5.
1998: Rob Barber; Timothy J Donohue
Pathways for transcriptional activation of a glutathione-dependent formaldehyde dehydrogenase gene.
Journal of molecular biology 1998;280(5):775-84.
1998: Rob Barber; Timothy J Donohue
Function of a glutathione-dependent formaldehyde dehydrogenase in Rhodobacter sphaeroides formaldehyde oxidation and assimilation.
Biochemistry 1998;37(2):530-7.
1998: RK Karls; J Brooks; P Rossmeissl; J Luedke; Timothy J Donohue
Metabolic roles of a Rhodobacter sphaeroides member of the sigma32 family.
Journal of bacteriology 1998;180(1):10-9.
1998: B J MacGregor; RK Karls; Timothy J Donohue
Transcription of the Rhodobacter sphaeroides cycA P1 promoter by alternate RNA polymerase holoenzymes.
Journal of bacteriology 1998;180(1):1-9.
1997: J E Flory; Timothy J Donohue
Transcriptional control of several aerobically induced cytochrome structural genes in Rhodobacter sphaeroides.
Microbiology (Reading, England) 1997;143 ( Pt 10)():3101-10.
1997: V C Witthuhn; J Gao; Sangjin Hong; S Halls; M A Rott; Colin A Wraight; Antony R Crofts; Timothy J Donohue
Reactions of isocytochrome c2 in the photosynthetic electron transfer chain of Rhodobacter sphaeroides.
Biochemistry 1997;36(4):903-11.
1997: Scott B Bintrim; Timothy J Donohue; Jo Handelsman; Gary P Roberts; Robert M Goodman
Molecular phylogeny of Archaea from soil.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(1):277-82.
1996: Rob Barber; M A Rott; Timothy J Donohue
Characterization of a glutathione-dependent formaldehyde dehydrogenase from Rhodobacter sphaeroides.
Journal of bacteriology 1996;178(5):1386-93.
1995: J E Flory; Timothy J Donohue
Organization and expression of the Rhodobacter sphaeroides cycFG operon.
Journal of bacteriology 1995;177(15):4311-20.
1995: B A Schilke; Timothy J Donohue
ChrR positively regulates transcription of the Rhodobacter sphaeroides cytochrome c2 gene.
Journal of bacteriology 1995;177(8):1929-37.
1994: J P Brandner; Timothy J Donohue
The Rhodobacter sphaeroides cytochrome c2 signal peptide is not necessary for export and heme attachment.
Journal of bacteriology 1994;176(3):602-9.
1993: J Mecsas; P E Rouviere; James W. Erickson; Timothy J Donohue; Carol A Gross
The activity of sigma E, an Escherichia coli heat-inducible sigma-factor, is modulated by expression of outer membrane proteins.
Genes & development 1993;7(12B):2618-28.
1993: RK Karls; D J Jin; Timothy J Donohue
Transcription properties of RNA polymerase holoenzymes isolated from the purple nonsulfur bacterium Rhodobacter sphaeroides.
Journal of bacteriology 1993;175(23):7629-38.
1993: M A Rott; V C Witthuhn; B A Schilke; M Soranno; A Ali; Timothy J Donohue
Genetic evidence for the role of isocytochrome c2 in photosynthetic growth of Rhodobacter sphaeroides Spd mutants.
Journal of bacteriology 1993;175(2):358-66.
1992: B A Schilke; Timothy J Donohue
delta-Aminolevulinate couples cycA transcription to changes in heme availability in Rhodobacter sphaeroides.
Journal of molecular biology 1992;226(1):101-15.
1992: M A Rott; J Fitch; Terry E Meyer; Timothy J Donohue
Regulation of a cytochrome c2 isoform in wild-type and cytochrome c2 mutant strains of Rhodobacter sphaeroides.
Archives of biochemistry and biophysics 1992;292(2):576-82.
1991: J P Brandner; E V Stabb; R Temme; Timothy J Donohue
Regions of Rhodobacter sphaeroides cytochrome c2 required for export, heme attachment, and function.
Journal of bacteriology 1991;173(13):3958-65.
1991: B J MacGregor; Timothy J Donohue
Evidence for two promoters for the cytochrome c2 gene (cycA) of Rhodobacter sphaeroides.
Journal of bacteriology 1991;173(13):3949-57.
1990: M A Rott; Timothy J Donohue
Rhodobacter sphaeroides spd mutations allow cytochrome c2-independent photosynthetic growth.
Journal of bacteriology 1990;172(4):1954-61.
1989: J Fitch; V Cannac; Terry E Meyer; Michael A Cusanovich; Gordon Tollin; J Van Beeumen; M A Rott; Timothy J Donohue
Expression of a cytochrome c2 isozyme restores photosynthetic growth of Rhodobacter sphaeroides mutants lacking the wild-type cytochrome c2 gene.
Archives of biochemistry and biophysics 1989;271(2):502-7.
1989: J P Brandner; A G McEwan; samuel kaplan; Timothy J Donohue
Expression of the Rhodobacter sphaeroides cytochrome c2 structural gene.
Journal of bacteriology 1989;171(1):360-8.
1988: Timothy J Donohue; A G McEwan; Steven R Van Doren; A R Crofts; samuel kaplan
Phenotypic and genetic characterization of cytochrome c2 deficient mutants of Rhodobacter sphaeroides.
Biochemistry 1988;27(6):1918-25.