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Vivek Anantharaman

Research Profile

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Genes & Molecular Sequences

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Evolution, Molecular

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Physiology

Signal Transduction

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Publications

TOP 3
Vivek Anantharaman; Lakshminarayan M Iyer; L Aravind
Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing.
Kira S Makarova; Vivek Anantharaman; L Aravind; Eugene V Koonin
Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes.
L Aravind; Robson F de Souza; Vivek Anantharaman; Dapeng Zhang; Lakshminarayan M Iyer
Gene flow and biological conflict systems in the origin and evolution of eukaryotes.

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All Publications

2012: Vivek Anantharaman; Lakshminarayan M Iyer; L Aravind
Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing.
Molecular bioSystems 2012;8(12):3142-65.
2012: Kira S Makarova; Vivek Anantharaman; L Aravind; Eugene V Koonin
Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes.
Biology direct 2012;7():40.
2012: L Aravind; Robson F de Souza; Vivek Anantharaman; Dapeng Zhang; Lakshminarayan M Iyer
Gene flow and biological conflict systems in the origin and evolution of eukaryotes.
Frontiers in cellular and infection microbiology 2012;2():89.
2012: Dapeng Zhang; Vivek Anantharaman; Robson F de Souza; Lakshminarayan M Iyer; L Aravind
Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics.
Biology direct 2012;7():18.
2010: Vivek Anantharaman; Lakshminarayan M Iyer; L Aravind
Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains.
Biology direct 2010;5():43.
2010: Vivek Anantharaman; Dapeng Zhang; L Aravind
OST-HTH: a novel predicted RNA-binding domain.
Biology direct 2010;5():13.
2010: Vivek Anantharaman; L Aravind
Novel eukaryotic enzymes modifying cell-surface biopolymers.
Biology direct 2010;5():1.
2009: L Aravind; Vivek Anantharaman; Thiago M Venancio
Apprehending multicellularity: regulatory networks, genomics, and evolution.
Birth defects research. Part C, Embryo today : reviews 2009;87(2):143-64.
2008: Vivek Anantharaman; L Aravind
Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites.
Cell cycle (Georgetown, Tex.) 2008;7(10):1467-72.
2008: Lakshminarayan M Iyer; Vivek Anantharaman; Maxim Y Wolf; L Aravind
Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes.
International journal for parasitology 2008;38(1):1-31.
2007: Lakshminarayan M Iyer; Vivek Anantharaman; L Aravind
The DOMON domains are involved in heme and sugar recognition.
Bioinformatics (Oxford, England) 2007;23(20):2660-4.
2007: Vivek Anantharaman; Lakshminarayan M Iyer; Santhanam Balaji; L Aravind
Adhesion molecules and other secreted host-interaction determinants in Apicomplexa: insights from comparative genomics.
International review of cytology 2007;262():1-74.
2007: Vivek Anantharaman; Lakshminarayan M Iyer; L Aravind
Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation.
Annual review of microbiology 2007;61():453-75.
2006: Vivek Anantharaman; L Aravind
Diversification of catalytic activities and ligand interactions in the protein fold shared by the sugar isomerases, eIF2B, DeoR transcription factors, acyl-CoA transferases and methenyltetrahydrofolate synthetase.
Journal of molecular biology 2006;356(3):823-42.
2006: Vivek Anantharaman; L Aravind
The NYN domains: novel predicted RNAses with a PIN domain-like fold.
RNA biology 2006;3(1):18-27.
2006: Vivek Anantharaman; S Balaji; L Aravind
The signaling helix: a common functional theme in diverse signaling proteins.
Biology direct 2006;1():25.
2005: Vivek Anantharaman; L Aravind
MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems.
Bioinformatics (Oxford, England) 2005;21(12):2805-11.
2005: L Aravind; Vivek Anantharaman; Santhanam Balaji; M Madan Babu; Lakshminarayan M Iyer
The many faces of the helix-turn-helix domain: transcription regulation and beyond.
FEMS microbiology reviews 2005;29(2):231-62.
2004: Ben Mans; Vivek Anantharaman; L Aravind; Eugene V Koonin
Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex.
Cell cycle (Georgetown, Tex.) 2004;3(12):1612-37.
2004: Vivek Anantharaman; L Aravind
The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies.
Proteins 2004;56(4):795-807.
2004: Vivek Anantharaman; L Aravind
Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.
BMC genomics 2004;5(1):45.
2003: L Aravind; Vivek Anantharaman; Lakshminaryan M Iyer
Evolutionary connections between bacterial and eukaryotic signaling systems: a genomic perspective.
Current opinion in microbiology 2003;6(5):490-7.
2003: Vivek Anantharaman; L Aravind
Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria.
BMC genomics 2003;4(1):34.
2003: L Aravind; Vivek Anantharaman
HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold.
FEMS microbiology letters 2003;222(1):17-23.
2003: Vivek Anantharaman; L Aravind; Eugene V Koonin
Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins.
Current opinion in chemical biology 2003;7(1):12-20.
2003: Vivek Anantharaman; L Aravind
New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system.
Genome biology 2003;4(12):R81.
2003: L Aravind; Lakshminarayan M Iyer; Vivek Anantharaman
The two faces of Alba: the evolutionary connection between proteins participating in chromatin structure and RNA metabolism.
Genome biology 2003;4(10):R64.
2003: Vivek Anantharaman; L Aravind
Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes.
Genome biology 2003;4(2):R11.
2003: Lakshminarayan M Iyer; Vivek Anantharaman; L Aravind
Ancient conserved domains shared by animal soluble guanylyl cyclases and bacterial signaling proteins.
BMC genomics 2003;4(1):5.
2002: Vivek Anantharaman; L Aravind
The PRC-barrel: a widespread, conserved domain shared by photosynthetic reaction center subunits and proteins of RNA metabolism.
Genome biology 2002;3(11):RESEARCH0061.
2002: L Aravind; Vivek Anantharaman; Eugene V Koonin
Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.
Proteins 2002;48(1):1-14.
2002: Vivek Anantharaman; Eugene V Koonin; L Aravind
Comparative genomics and evolution of proteins involved in RNA metabolism.
Nucleic acids research 2002;30(7):1427-64.
2002: Vivek Anantharaman; L Aravind
MOSC domains: ancient, predicted sulfur-carrier domains, present in diverse metal-sulfur cluster biosynthesis proteins including Molybdenum cofactor sulfurases.
FEMS microbiology letters 2002;207(1):55-61.
2002: Vivek Anantharaman; L Aravind
The GOLD domain, a novel protein module involved in Golgi function and secretion.
Genome biology 2002;3(5):research0023.
2002: Vivek Anantharaman; Eugene V Koonin; L Aravind
SPOUT: a class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases.
Journal of molecular microbiology and biotechnology 2002;4(1):71-5.
2001: Vivek Anantharaman; L Aravind
The CHASE domain: a predicted ligand-binding module in plant cytokinin receptors and other eukaryotic and bacterial receptors.
Trends in biochemical sciences 2001;26(10):579-82.
2001: Vivek Anantharaman; Eugene V Koonin; L Aravind
TRAM, a predicted RNA-binding domain, common to tRNA uracil methylation and adenine thiolation enzymes.
FEMS microbiology letters 2001;197(2):215-21.
2001: Vivek Anantharaman; Eugene V Koonin; L Aravind
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.
Journal of molecular biology 2001;307(5):1271-92.
2000: Vivek Anantharaman; L Aravind
Cache - a signaling domain common to animal Ca(2+)-channel subunits and a class of prokaryotic chemotaxis receptors.
Trends in biochemical sciences 2000;25(11):535-7.