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Keith Dunker

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TOP 3
Bin Xue; Celeste J Brown; A Keith Dunker; Vladimir N Uversky
Intrinsically disordered regions of p53 family are highly diversified in evolution.
Wei-Lun Hsu; Fei Huang; Jingwei Meng; Christopher J Oldfield; Pedro Romero; Vladimir N Uversky; Bin Xue; A Keith Dunker
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding.
Christopher J Oldfield; Eldon L Ulrich; A Keith Dunker; John L Markley; Ya-Yue Van; Bin Xue; Vladimir N Uversky
Utilization of protein intrinsic disorder knowledge in structural proteomics.

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All Publications

2013: Bin Xue; Celeste J Brown; A Keith Dunker; Vladimir N Uversky
Intrinsically disordered regions of p53 family are highly diversified in evolution.
Biochimica et biophysica acta 2013;1834(4):725-38.
2013: Wei-Lun Hsu; Fei Huang; Jingwei Meng; Christopher J Oldfield; Pedro Romero; Vladimir N Uversky; Bin Xue; A Keith Dunker
Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding.
Protein science : a publication of the Protein Society 2013;22(3):258-73.
2013: Christopher J Oldfield; Eldon L Ulrich; A Keith Dunker; John L Markley; Ya-Yue Van; Bin Xue; Vladimir N Uversky
Utilization of protein intrinsic disorder knowledge in structural proteomics.
Biochimica et biophysica acta 2013;1834(2):487-98.
2013: Vladimir N Uversky; A Keith Dunker
The case for intrinsically disordered proteins playing contributory roles in molecular recognition without a stable 3D structure.
F1000 biology reports 2013;5():1.
2013: Matt E Oates; Zoran Obradovic; Pedro Romero; Vladimir N Uversky; Bin Xue; Zsuzsanna Dosztányi; A Keith Dunker; Mohamed Ghalwash; Takashi Ishida; Lukasz Kurgan; Marcin J Mizianty; Julian Gough
D²P²: database of disordered protein predictions.
Nucleic acids research 2013;41(Database issue):D508-16.
2013: Motonori Ota; Pedro R Romero; Takeshi Tenno; Takayuki Amemiya; A Keith Dunker; Hidekazu Hiroaki; Ryotaro Koike; Satoshi Fukuchi
An assignment of intrinsically disordered regions of proteins based on NMR structures.
Journal of structural biology 2013;181(1):29-36.
2012: Derrick E Johnson; Tanguy Le Gall; Jingwei Meng; Christopher J Oldfield; Megan D Sickmeier; Marc S Cortese; A Keith Dunker; Bin Xue; Vladimir N Uversky
High-throughput characterization of intrinsic disorder in proteins from the Protein Structure Initiative.
Journal of structural biology 2012;180(1):201-15.
2012: Aaron A Santner; Vladimir N Uversky; Ya-Yue J Van; Farha H Vasanwala; Carrie H Croy; A Keith Dunker
Sweeping away protein aggregation with entropic bristles: intrinsically disordered protein fusions enhance soluble expression.
Biochemistry 2012;51(37):7250-62.
2012: Fatemeh Miri Disfani; A Keith Dunker; Wei-Lun Hsu; Marcin J Mizianty; Christopher J Oldfield; Vladimir N Uversky; Bin Xue; Lukasz Kurgan
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins.
Bioinformatics (Oxford, England) 2012;28(12):i75-83.
2012: Jiangang Liu; A Keith Dunker; Shuyu Li; Vladimir Uversky
Molecular profiling: an essential technology enabling personalized medicine in breast cancer.
Current drug targets 2012;13(4):541-54.
2012: Vladimir Uversky; A Keith Dunker
Multiparametric analysis of intrinsically disordered proteins: looking at intrinsic disorder through compound eyes.
Analytical chemistry 2012;84(5):2096-104.
2012: Gerard Kian-Meng Goh; A Keith Dunker; Vladimir N Uversky
Understanding Viral Transmission Behavior via Protein Intrinsic Disorder Prediction: Coronaviruses.
Journal of pathogens 2012;2012():738590.
2012: Bin Xue; A Keith Dunker; Vladimir N Uversky
Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life.
Journal of biomolecular structure & dynamics 2012;30(2):137-49.
2012: Mythily Srinivasan; A Keith Dunker
Proline rich motifs as drug targets in immune mediated disorders.
International journal of peptides 2012;2012():634769.
2012: Mohamed F Ghalwash; A Keith Dunker; Zoran Obradović
Uncertainty analysis in protein disorder prediction.
Molecular bioSystems 2012;8(1):381-91.
2012: Bin Xue; Ya-Yue Van; A Keith Dunker; Christopher J Oldfield; Vladimir Uversky
Protein intrinsic disorder and induced pluripotent stem cells.
Molecular bioSystems 2012;8(1):134-50.
2011: Yang Hu; Jeesun Jung; Yunlong Liu; A Keith Dunker; Yadong Wang
Changes in predicted protein disorder tendency may contribute to disease risk.
BMC genomics 2011;12 Suppl 5():S2.
2011: Xiaolin Sun; A Keith Dunker; William T Jones; Erik Rikkerink; Bin Xue; Vladimir Uversky
A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development.
Plant molecular biology 2011;77(3):205-23.
2011: Bin Xue; A Keith Dunker; Mats G Gustafsson; Ulf Hammerling; Daniel Soeria-Atmadja; Vladimir Uversky
Abundance and functional roles of intrinsic disorder in allergenic proteins and allergen representative peptides.
Proteins 2011;79(9):2595-606.
2011: Emiliano J Sanchez; Gerhard R Munske; Angela Criswell; Hendrik Milting; A Keith Dunker; Chulhee Kang
Phosphorylation of human calsequestrin: implications for calcium regulation.
Molecular and cellular biochemistry 2011;353(1-2):195-204.
2011: A Keith Dunker; Julian Gough
Sequences and topology: intrinsic disorder in the evolving universe of protein structure.
Current opinion in structural biology 2011;21(3):379-81.
2011: Celeste J Brown; A Keith Dunker; Audra K Johnson; Gary W. Daughdrill
Evolution and disorder.
Current opinion in structural biology 2011;21(3):441-6.
2011: A Keith Dunker; Richard W Kriwacki
The orderly chaos of proteins.
Scientific American 2011;304(4):68-73.
2011: Stacy E Dixon; Micah M Bhatti; Vladimir Uversky; A Keith Dunker; William J Sullivan
Regions of intrinsic disorder help identify a novel nuclear localization signal in Toxoplasma gondii histone acetyltransferase TgGCN5-B.
Molecular and biochemical parasitology 2011;175(2):192-5.
2011: Marcin J Mizianty; Vladimir Uversky; Bin Xue; Tuo Zhang; Yaoqi Zhou; A Keith Dunker; Lukasz Kurgan
In-silico prediction of disorder content using hybrid sequence representation.
BMC bioinformatics 2011;12():245.
2010: A Keith Dunker; Vladimir Uversky
Drugs for 'protein clouds': targeting intrinsically disordered transcription factors.
Current opinion in pharmacology 2010;10(6):782-8.
2010: Jianjiong Gao; Jay J Thelen; A Keith Dunker; Dong Xu
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites.
Molecular & cellular proteomics : MCP 2010;9(12):2586-600.
2010: Bin Xue; Robert W Williams; Christopher J Oldfield; Gerard Kian-Meng Goh; A Keith Dunker; Vladimir Uversky
Viral disorder or disordered viruses: do viral proteins possess unique features?
Protein and peptide letters 2010;17(8):932-51.
2010: Bin Xue; Wei-Lun Hsu; Jun-Ho Lee; Hua lu; A Keith Dunker; Vladimir Uversky
SPA: Short peptide analyzer of intrinsic disorder status of short peptides.
Genes to cells : devoted to molecular & cellular mechanisms 2010;15(6):635-46.
2010: Vladimir Uversky; A Keith Dunker
Understanding protein non-folding.
Biochimica et biophysica acta 2010;1804(6):1231-64.
2010: Xiaolin Sun; William T Jones; Dawn Harvey; Patrick J B Edwards; Steven M Pascal; Christopher Kirk; Thérèse Considine; David J Sheerin; Jasna Rakonjac; Christopher J Oldfield; Bin Xue; A Keith Dunker; Vladimir Uversky
N-terminal domains of DELLA proteins are intrinsically unstructured in the absence of interaction with GID1/gibberellic acid receptors.
The Journal of biological chemistry 2010;285(15):11557-71.
2010: Bin Xue; Roland L Dunbrack; Robert W Williams; A Keith Dunker; Vladimir Uversky
PONDR-FIT: a meta-predictor of intrinsically disordered amino acids.
Biochimica et biophysica acta 2010;1804(4):996-1010.
2010: Bin Xue; A Keith Dunker; Vladimir Uversky
Retro-MoRFs: Identifying Protein Binding Sites by Normal and Reverse Alignment and Intrinsic Disorder Prediction.
International journal of molecular sciences 2010;11(10):3725-47.
2010: Jack Y Yang; Andrzej Niemierko; Ruzena Bajcsy; Dong Xu; Brian D Athey; Aidong Zhang; Okan K Ersoy; Guo-Zheng Li; Mark Borodovsky; Joe C Zhang; Hamid R Arabnia; Youping Deng; A Keith Dunker; Yunlong Liu; Arif Ghafoor
2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research.
BMC genomics 2010;11 Suppl 3():I1.
2010: Bin Xue; Robert W Williams; Christopher J Oldfield; A Keith Dunker; Vladimir Uversky
Archaic chaos: intrinsically disordered proteins in Archaea.
BMC systems biology 2010;4 Suppl 1():S1.
2009: Bin Xue; Liwei Li; Samy O Meroueh; Vladimir Uversky; A Keith Dunker
Analysis of structured and intrinsically disordered regions of transmembrane proteins.
Molecular bioSystems 2009;5(12):1688-1702.
2009: Corinne Rancurel; Mahvash Khosravi; A Keith Dunker; Pedro R Romero; David Karlin
Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation.
Journal of virology 2009;83(20):10719-36.
2009: Bo He; Kejun Wang; Yunlong Liu; Bin Xue; Vladimir Uversky; A Keith Dunker
Predicting intrinsic disorder in proteins: an overview.
Cell research 2009;19(8):929-49.
2009: bin xue; Christopher J Oldfield; A Keith Dunker; Vladimir Uversky
CDF it all: consensus prediction of intrinsically disordered proteins based on various cumulative distribution functions.
FEBS letters 2009;583(9):1469-74.
2009: Peter Tompa; Monika Fuxreiter; Christopher J Oldfield; Istvan Simon; A Keith Dunker; Vladimir Uversky
Close encounters of the third kind: disordered domains and the interactions of proteins.
BioEssays : news and reviews in molecular, cellular and developmental biology 2009;31(3):328-35.
2009: Shide Liang; Liwei Li; Wei-Lun Hsu; Meaghan N Pilcher; Vladimir Uversky; Yaoqi Zhou; A Keith Dunker; Samy O Meroueh
Exploring the molecular design of protein interaction sites with molecular dynamics simulations and free energy calculations.
Biochemistry 2009;48(2):399-414.
2009: Uros Midic; Christopher J Oldfield; A Keith Dunker; Zoran Obradovic; Vladimir Uversky
Unfoldomics of human genetic diseases: illustrative examples of ordered and intrinsically disordered members of the human diseasome.
Protein and peptide letters 2009;16(12):1533-47.
2009: Vladimir Uversky; Christopher J Oldfield; Uros Midic; Hongbo Xie; bin xue; Slobodan Vucetic; Lilia M Iakoucheva; Zoran Obradovic; A Keith Dunker
Unfoldomics of human diseases: linking protein intrinsic disorder with diseases.
BMC genomics 2009;10 Suppl 1():S7.
2009: Uros Midic; Christopher J Oldfield; A Keith Dunker; Zoran Obradovic; Vladimir Uversky
Protein disorder in the human diseasome: unfoldomics of human genetic diseases.
BMC genomics 2009;10 Suppl 1():S12.
2009: Gerard Kian-Meng Goh; A Keith Dunker; Vladimir Uversky
Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses.
Virology journal 2009;6():69.
2008: A Keith Dunker; Israel Silman; Vladimir Uversky; Joel Sussman
Function and structure of inherently disordered proteins.
Current opinion in structural biology 2008;18(6):756-64.
2008: Vladimir Uversky; A Keith Dunker
Biochemistry. Controlled chaos.
Science (New York, N.Y.) 2008;322(5906):1340-1.
2008: Kimmo I Rantalainen; Vladimir Uversky; Perttu Permi; Nisse Kalkkinen; A Keith Dunker; Kristiina Mäkinen
Potato virus A genome-linked protein VPg is an intrinsically disordered molten globule-like protein with a hydrophobic core.
Virology 2008;377(2):280-8.
2008: Oleg Paliy; Shawn M Gargac; Yugong Cheng; Vladimir Uversky; A Keith Dunker
Protein disorder is positively correlated with gene expression in Escherichia coli.
Journal of proteome research 2008;7(6):2234-45.
2008: Amrita Mohan; William J Sullivan; Predrag Radivojac; A Keith Dunker; Vladimir Uversky
Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes.
Molecular bioSystems 2008;4(4):328-40.
2008: A Keith Dunker; Vladimir Uversky
Signal transduction via unstructured protein conduits.
Nature chemical biology 2008;4(4):229-30.
2008: Wei Zhang; A Keith Dunker; Yaoqi Zhou
Assessing secondary structure assignment of protein structures by using pairwise sequence-alignment benchmarks.
Proteins 2008;71(1):61-7.
2008: Andrew Campen; Ryan M Williams; Celeste J Brown; Jingwei Meng; Vladimir Uversky; A Keith Dunker
TOP-IDP-scale: a new amino acid scale measuring propensity for intrinsic disorder.
Protein and peptide letters 2008;15(9):956-63.
2008: Gerard Kian-Meng Goh; A Keith Dunker; Vladimir Uversky
A comparative analysis of viral matrix proteins using disorder predictors.
Virology journal 2008;5():126.
2008: Gerard Kian-Meng Goh; A Keith Dunker; Vladimir Uversky
Protein intrinsic disorder toolbox for comparative analysis of viral proteins.
BMC genomics 2008;9 Suppl 2():S4.
2008: Siyuan Ren; Vladimir Uversky; Zhengjun Chen; A Keith Dunker; Zoran Obradovic
Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions.
BMC genomics 2008;9 Suppl 2():S26.
2008: A Keith Dunker; Christopher J Oldfield; Jingwei Meng; Pedro Romero; Jack Y Yang; Jessica Walton Chen; Vladimir Vacic; Zoran Obradovic; Vladimir Uversky
The unfoldomics decade: an update on intrinsically disordered proteins.
BMC genomics 2008;9 Suppl 2():S1.
2008: Jiangang Liu; Andrew Campen; Shuguang Huang; Sheng-Bin Peng; Xiang Ye; Mathew Palakal; A Keith Dunker; Yuni Xia; Shuyu Li
Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data.
BMC medical genomics 2008;1():39.
2008: Vladimir Uversky; Christopher J Oldfield; A Keith Dunker
Intrinsically disordered proteins in human diseases: introducing the D2 concept.
Annual review of biophysics 2008;37():215-46.
2008: Jack Y Yang; Mary Qu Yang; A Keith Dunker; Youping Deng; Xudong Huang
Investigation of transmembrane proteins using a computational approach.
BMC genomics 2008;9 Suppl 1():S7.
2008: Christopher J Oldfield; Jingwei Meng; Jack Y Yang; Mary Qu Yang; Vladimir Uversky; A Keith Dunker
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners.
BMC genomics 2008;9 Suppl 1():S1.
2007: Liwei Li; Vladimir Uversky; A Keith Dunker; Samy O Meroueh
A computational investigation of allostery in the catabolite activator protein.
Journal of the American Chemical Society 2007;129(50):15668-76.
2007: Yugong Cheng; Christopher J Oldfield; Jingwei Meng; Pedro Romero; Vladimir Uversky; A Keith Dunker
Mining alpha-helix-forming molecular recognition features with cross species sequence alignments.
Biochemistry 2007;46(47):13468-77.
2007: Thomas D Hurley; Jie Yang; Lili Zhang; Kristie D. Goodwin; Qin Zou; Marc Cortese; A Keith Dunker; Anna A DePaoli-Roach
Structural basis for regulation of protein phosphatase 1 by inhibitor-2.
The Journal of biological chemistry 2007;282(39):28874-83.
2007: A Keith Dunker
Another window into disordered protein function.
Structure (London, England : 1993) 2007;15(9):1026-8.
2007: Vladimir Vacic; Christopher J Oldfield; Amrita Mohan; Predrag Radivojac; Marc S Cortese; Vladimir Uversky; A Keith Dunker
Characterization of molecular recognition features, MoRFs, and their binding partners.
Journal of proteome research 2007;6(6):2351-66.
2007: hongbo xie; Slobodan Vucetic; Lilia M Iakoucheva; Christopher J Oldfield; A Keith Dunker; Zoran Obradovic; Vladimir Uversky
Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.
Journal of proteome research 2007;6(5):1917-32.
2007: Slobodan Vucetic; hongbo xie; Lilia M Iakoucheva; Christopher J Oldfield; A Keith Dunker; Zoran Obradovic; Vladimir Uversky
Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions.
Journal of proteome research 2007;6(5):1899-916.
2007: hongbo xie; Slobodan Vucetic; Lilia M Iakoucheva; Christopher J Oldfield; A Keith Dunker; Vladimir Uversky; Zoran Obradovic
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.
Journal of proteome research 2007;6(5):1882-98.
2007: A Keith Dunker; Ariel Fernández
Engineering productive enzyme confinement.
Trends in biotechnology 2007;25(5):189-90.
2007: Predrag Radivojac; Lilia M Iakoucheva; Christopher J Oldfield; Zoran Obradovic; Vladimir Uversky; A Keith Dunker
Intrinsic disorder and functional proteomics.
Biophysical journal 2007;92(5):1439-56.
2007: Tanguy Le Gall; Pedro R Romero; Marc S Cortese; Vladimir Uversky; A Keith Dunker
Intrinsic disorder in the Protein Data Bank.
Journal of biomolecular structure & dynamics 2007;24(4):325-42.
2007: Uros Midic; A Keith Dunker; Zoran Obradovic
Exploring alternative knowledge representations for protein secondary-structure prediction.
International journal of data mining and bioinformatics 2007;1(3):286-313.
2007: Vladimir Uversky; Predrag Radivojac; Lilia M Iakoucheva; Zoran Obradovic; A Keith Dunker
Prediction of intrinsic disorder and its use in functional proteomics.
Methods in molecular biology (Clifton, N.J.) 2007;408():69-92.
2007: Vladimir Vacic; Vladimir Uversky; A Keith Dunker; Stefano Lonardi
Composition Profiler: a tool for discovery and visualization of amino acid composition differences.
BMC bioinformatics 2007;8():211.
2007: Megan Sickmeier; Justin A Hamilton; Tanguy LeGall; Vladimir Vacic; Marc S Cortese; Agnes Tantos; Beata Szabo; Peter Tompa; Jake Chen; Vladimir Uversky; Zoran Obradovic; A Keith Dunker
DisProt: the Database of Disordered Proteins.
Nucleic acids research 2007;35(Database issue):D786-93.
2006: Zsuzsanna Dosztányi; Jake Chen; A Keith Dunker; Istvan Simon; Peter Tompa
Disorder and sequence repeats in hub proteins and their implications for network evolution.
Journal of proteome research 2006;5(11):2985-95.
2006: Amrita Mohan; Christopher J Oldfield; Predrag Radivojac; Vladimir Vacic; Marc S Cortese; A Keith Dunker; Vladimir Uversky
Analysis of molecular recognition features (MoRFs).
Journal of molecular biology 2006;362(5):1043-59.
2006: Yugong Cheng; Tanguy LeGall; Christopher J Oldfield; James P Mueller; Ya-Yue J Van; Pedro Romero; Marc S Cortese; Vladimir Uversky; A Keith Dunker
Rational drug design via intrinsically disordered protein.
Trends in biotechnology 2006;24(10):435-42.
2006: Yugong Cheng; Tanguy LeGall; Christopher J Oldfield; A Keith Dunker; Vladimir Uversky
Abundance of intrinsic disorder in protein associated with cardiovascular disease.
Biochemistry 2006;45(35):10448-60.
2006: Vladimir Uversky; Ann Roman; Christopher J Oldfield; A Keith Dunker
Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs.
Journal of proteome research 2006;5(8):1829-42.
2006: Jiangang Liu; Narayanan Perumal; Christopher J Oldfield; Eric W Su; Vladimir Uversky; A Keith Dunker
Intrinsic disorder in transcription factors.
Biochemistry 2006;45(22):6873-88.
2006: Pedro R Romero; Saima Zaidi; Ya-Yin Fang; Vladimir Uversky; Predrag Radivojac; Christopher J Oldfield; Marc S Cortese; Megan Sickmeier; Tanguy LeGall; Zoran Obradovic; A Keith Dunker
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(22):8390-5.
2006: Predrag Radivojac; Slobodan Vucetic; Timothy R O'Connor; Vladimir Uversky; Zoran Obradovic; A Keith Dunker
Calmodulin signaling: analysis and prediction of a disorder-dependent molecular recognition.
Proteins 2006;63(2):398-410.
2006: Jessica Walton Chen; Pedro Romero; Vladimir Uversky; A Keith Dunker
Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder.
Journal of proteome research 2006;5(4):888-98.
2006: Jessica Walton Chen; Pedro Romero; Vladimir Uversky; A Keith Dunker
Conservation of intrinsic disorder in protein domains and families: I. A database of conserved predicted disordered regions.
Journal of proteome research 2006;5(4):879-87.
2006: Kang Peng; Predrag Radivojac; Slobodan Vucetic; A Keith Dunker; Zoran Obradovic
Length-dependent prediction of protein intrinsic disorder.
BMC bioinformatics 2006;7():208.
2005: A Keith Dunker; Marc S Cortese; Pedro Romero; Lilia M Iakoucheva; Vladimir Uversky
Flexible nets. The roles of intrinsic disorder in protein interaction networks.
The FEBS journal 2005;272(20):5129-48.
2005: Christopher J Oldfield; Yugong Cheng; Marc S Cortese; Pedro Romero; Vladimir Uversky; A Keith Dunker
Coupled folding and binding with alpha-helix-forming molecular recognition elements.
Biochemistry 2005;44(37):12454-70.
2005: Marc S Cortese; Jason P Baird; Vladimir Uversky; A Keith Dunker
Uncovering the unfoldome: enriching cell extracts for unstructured proteins by acid treatment.
Journal of proteome research 2005;4(5):1610-8.
2005: Vladimir Uversky; Christopher J Oldfield; A Keith Dunker
Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling.
Journal of molecular recognition : JMR 2005;18(5):343-84.
2005: Christopher J Oldfield; Eldon L Ulrich; Yugong Cheng; A Keith Dunker; John Lute Markley
Addressing the intrinsic disorder bottleneck in structural proteomics.
Proteins 2005;59(3):444-53.
2005: Christopher J Oldfield; Yugong Cheng; Marc S Cortese; Celeste J Brown; Vladimir Uversky; A Keith Dunker
Comparing and combining predictors of mostly disordered proteins.
Biochemistry 2005;44(6):1989-2000.
2005: Kang Peng; Slobodan Vucetic; Predrag Radivojac; Celeste J Brown; A Keith Dunker; Zoran Obradovic
Optimizing long intrinsic disorder predictors with protein evolutionary information.
Journal of bioinformatics and computational biology 2005;3(1):35-60.
2005: Zoran Obradovic; Kang Peng; Slobodan Vucetic; Predrag Radivojac; A Keith Dunker
Exploiting heterogeneous sequence properties improves prediction of protein disorder.
Proteins 2005;61 Suppl 7():176-82.
2005: Il Yeong Park; Eun Jung Kim; HaJeung Park; Kelly Fields; A Keith Dunker; ChulHee Kang
Interaction between cardiac calsequestrin and drugs with known cardiotoxicity.
Molecular pharmacology 2005;67(1):97-104.
2005: Slobodan Vucetic; Zoran Obradovic; Vladimir Vacic; Predrag Radivojac; Kang Peng; Lilia M Iakoucheva; Marc S Cortese; J David Lawson; Celeste J Brown; Jason G Sikes; Crystal D Newton; A Keith Dunker
DisProt: a database of protein disorder.
Bioinformatics (Oxford, England) 2005;21(1):137-40.
2004: Clay Bracken; Lilia M Iakoucheva; Pedro R Romero; A Keith Dunker
Combining prediction, computation and experiment for the characterization of protein disorder.
Current opinion in structural biology 2004;14(5):570-6.
2004: Predrag Radivojac; Nitesh V Chawla; A Keith Dunker; Zoran Obradovic
Classification and knowledge discovery in protein databases.
Journal of biomedical informatics 2004;37(4):224-39.
2004: HaJeung Park; Il Yeong Park; EunJung Kim; Buhyun Youn; Kelly Fields; A Keith Dunker; ChulHee Kang
Comparing skeletal and cardiac calsequestrin structures and their calcium binding: a proposed mechanism for coupled calcium binding and protein polymerization.
The Journal of biological chemistry 2004;279(17):18026-33.
2004: Pedro Romero; Zoran Obradovic; A Keith Dunker
Natively disordered proteins: functions and predictions.
Applied bioinformatics 2004;3(2-3):105-13.
2004: Lilia M Iakoucheva; Predrag Radivojac; Celeste J Brown; Timothy R O'Connor; Jason G Sikes; Zoran Obradovic; A Keith Dunker
The importance of intrinsic disorder for protein phosphorylation.
Nucleic acids research 2004;32(3):1037-49.
2004: Predrag Radivojac; Zoran Obradovic; David K Smith; Guang Zhu; Slobodan Vucetic; Celeste J Brown; J David Lawson; A Keith Dunker
Protein flexibility and intrinsic disorder.
Protein science : a publication of the Protein Society 2004;13(1):71-80.
2003: Lilia M Iakoucheva; A Keith Dunker
Order, disorder, and flexibility: prediction from protein sequence.
Structure (London, England : 1993) 2003;11(11):1316-7.
2003: Slobodan Vucetic; Celeste J Brown; A Keith Dunker; Zoran Obradovic
Flavors of protein disorder.
Proteins 2003;52(4):573-84.
2003: HaJeung Park; Si Wu; A Keith Dunker; ChulHee Kang
Polymerization of calsequestrin. Implications for Ca2+ regulation.
The Journal of biological chemistry 2003;278(18):16176-82.
2003: David K Smith; Predrag Radivojac; Zoran Obradovic; A Keith Dunker; Guang Zhu
Improved amino acid flexibility parameters.
Protein science : a publication of the Protein Society 2003;12(5):1060-72.
2003: Zoran Obradovic; Kang Peng; Slobodan Vucetic; Predrag Radivojac; Celeste J Brown; A Keith Dunker
Predicting intrinsic disorder from amino acid sequence.
Proteins 2003;53 Suppl 6():566-72.
2003: Predrag Radivojac; Zoran Obradović; Celeste J Brown; A Keith Dunker
Prediction of boundaries between intrinsically ordered and disordered protein regions.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2003;():216-27.
2002: Lilia M Iakoucheva; Celeste J Brown; J David Lawson; Zoran Obradović; A Keith Dunker
Intrinsic disorder in cell-signaling and cancer-associated proteins.
Journal of molecular biology 2002;323(3):573-84.
2002: Jian Yang; Joseph R Powers; Stephanie Clark; A Keith Dunker; Barry G Swanson
Hydrophobic probe binding of beta-lactoglobulin in the native and molten globule state induced by high pressure as affected by pH, KIO(3) and N-ethylmaleimide.
Journal of agricultural and food chemistry 2002;50(18):5207-14.
2002: Celeste J Brown; Sachiko Takayama; Andrew M Campen; Pam Vise; Thomas W Marshall; Christopher J Oldfield; Christopher J Williams; A Keith Dunker
Evolutionary rate heterogeneity in proteins with long disordered regions.
Journal of molecular evolution 2002;55(1):104-10.
2002: A Keith Dunker; Celeste J Brown; J David Lawson; Lilia M Iakoucheva; Zoran Obradović
Intrinsic disorder and protein function.
Biochemistry 2002;41(21):6573-82.
2002: A Keith Dunker; Celeste J Brown; Zoran Obradovic
Identification and functions of usefully disordered proteins.
Advances in protein chemistry 2002;62():25-49.
2002: Predrag Radivojac; Zoran Obradovic; Celeste J Brown; A Keith Dunker
Improving sequence alignments for intrinsically disordered proteins.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():589-600.
2002: ChulHee Kang; William R Trumble; A Keith Dunker
Crystallization and structure-function of calsequestrin.
Methods in molecular biology (Clifton, N.J.) 2002;172():281-94.
2001: Robert W Bailey; A Keith Dunker; Celeste J Brown; EC Garner; Michael D Griswold
Clusterin, a binding protein with a molten globule-like region.
Biochemistry 2001;40(39):11828-40.
2001: A Keith Dunker; Zoran Obradovic
The protein trinity--linking function and disorder.
Nature biotechnology 2001;19(9):805-6.
2001: J Yang; A Keith Dunker; Joseph R Powers; Stephanie Clark; Barry G Swanson
Beta-lactoglobulin molten globule induced by high pressure.
Journal of agricultural and food chemistry 2001;49(7):3236-43.
2001: Lilia M Iakoucheva; A L Kimzey; Christophe Masselon; R D Smith; A Keith Dunker; Eric J Ackerman
Aberrant mobility phenomena of the DNA repair protein XPA.
Protein science : a publication of the Protein Society 2001;10(7):1353-62.
2001: Lilia M Iakoucheva; A L Kimzey; Christophe Masselon; J E Bruce; EC Garner; Celeste J Brown; A Keith Dunker; R D Smith; Eric J Ackerman
Identification of intrinsic order and disorder in the DNA repair protein XPA.
Protein science : a publication of the Protein Society 2001;10(3):560-71.
2001: A Keith Dunker; J David Lawson; Celeste J Brown; R M Williams; P Romero; J S Oh; Christopher J Oldfield; A M Campen; C M Ratliff; KW Hipps; J Ausio; MS Nissen; Raymond Reeves; C Kang; Charles R Kissinger; Robert W Bailey; Michael D Griswold; W Chiu; EC Garner; Zoran Obradovic
Intrinsically disordered protein.
Journal of molecular graphics & modelling 2001;19(1):26-59.
2001: R M Williams; Z Obradovi; Venkatarajan S Mathura; W Braun; EC Garner; J Young; S Takayama; Celeste J Brown; A Keith Dunker
The protein non-folding problem: amino acid determinants of intrinsic order and disorder.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():89-100.
2001: P Romero; Zoran Obradovic; X Li; EC Garner; Celeste J Brown; A Keith Dunker
Sequence complexity of disordered protein.
Proteins 2001;42(1):38-48.
2000: Virginie Guyon; J D Astwood; EC Garner; A Keith Dunker; Loverine P Taylor
Isolation and characterization of cDNAs expressed in the early stages of flavonol-induced pollen germination in petunia.
Plant physiology 2000;123(2):699-710.
2000: X Li; Zoran Obradovic; Celeste J Brown; EC Garner; A Keith Dunker
Comparing predictors of disordered protein.
Genome informatics. Workshop on Genome Informatics 2000;11():172-84.
2000: A Keith Dunker; Zoran Obradovic; P Romero; EC Garner; Celeste J Brown
Intrinsic protein disorder in complete genomes.
Genome informatics. Workshop on Genome Informatics 2000;11():161-71.
1999: P Romero; Zoran Obradovic; A Keith Dunker
Folding minimal sequences: the lower bound for sequence complexity of globular proteins.
FEBS letters 1999;462(3):363-7.
1999: J S Oh; D R Davies; J David Lawson; G E Arnold; A Keith Dunker
Isolation of chloroform-resistant mutants of filamentous phage: localization in models of phage structure.
Journal of molecular biology 1999;287(3):449-57.
1998: S Wang; W R Trumble; H Liao; C R Wesson; A Keith Dunker; C H Kang
Crystal structure of calsequestrin from rabbit skeletal muscle sarcoplasmic reticulum.
Nature structural biology 1998;5(6):476-83.
1998: X Ji; J Oh; A Keith Dunker; KW Hipps
Effects of relative humidity and applied force on atomic force microscopy images of the filamentous phage fd.
Ultramicroscopy 1998;72(3-4):165-76.
1998: A Keith Dunker; EC Garner; S Guilliot; P Romero; K Albrecht; J Hart; Zoran Obradovic; Charles R Kissinger; J Ernest Villafranca
Protein disorder and the evolution of molecular recognition: theory, predictions and observations.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():473-84.
1998: P Romero; Zoran Obradovic; Charles R Kissinger; J Ernest Villafranca; EC Garner; S Guilliot; A Keith Dunker
Thousands of proteins likely to have long disordered regions.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():437-48.
1996: S J Johns; S M Thompson; A Keith Dunker
An introductory course in computation molecular biology: rationale, history, observations, and course description.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1996;():396-407.
1996: K Albrecht; J Hart; A Shaw; A Keith Dunker
Quaternion contact ribbons: a new tool for visualizing intra- and intermolecular interactions in proteins.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1996;():41-52.
1994: P R Austin; P E Jablonski; Gregory A Bohach; A Keith Dunker; Carolyn J Hovde
Evidence that the A2 fragment of Shiga-like toxin type I is required for holotoxin integrity.
Infection and immunity 1994;62(5):1768-75.
1994: A Keith Dunker
P22 phage capsids under pressure.
Biophysical journal 1994;66(5):1269-71.
1993: Z He; A Keith Dunker; C R Wesson; WR Trumble
Ca(2+)-induced folding and aggregation of skeletal muscle sarcoplasmic reticulum calsequestrin. The involvement of the trifluoperazine-binding site.
The Journal of biological chemistry 1993;268(33):24635-41.
1993: L M Roberts; A Keith Dunker
Structural changes accompanying chloroform-induced contraction of the filamentous phage fd.
Biochemistry 1993;32(39):10479-88.
1992: G E Arnold; L A Day; A Keith Dunker
Tryptophan contributions to the unusual circular dichroism of fd bacteriophage.
Biochemistry 1992;31(34):7948-56.
1992: G E Arnold; A Keith Dunker; S J Johns; R J Douthart
Use of conditional probabilities for determining relationships between amino acid sequence and protein secondary structure.
Proteins 1992;12(4):382-99.
1991: A Keith Dunker; L D Ensign; G E Arnold; L M Roberts
Proposed molten globule intermediates in fd phage penetration and assembly.
FEBS letters 1991;292(1-2):275-8.
1991: A Keith Dunker; L D Ensign; G E Arnold; L M Roberts
A model for fd phage penetration and assembly.
FEBS letters 1991;292(1-2):271-4.
1987: G E Arnold; A Keith Dunker; Michael J Smerdon
Limited nucleosome migration can completely randomize DNA repair patches in intact human cells.
Journal of molecular biology 1987;196(2):433-6.