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Martin Embley

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TOP 3
Tom A Williams; Cymon J Cox; Peter G Foster; Tom M W Nye; T Martin Embley
A congruent phylogenomic signal places eukaryotes within the Archaea.
Eva Heinz; Robert P Hirt; John M Lucocq; Stephanie Markert; Sirintra Nakjang; Christophe J Noël; Thomas Rattei; Thomas Schweder; Daniel C Swan; Thomas Weinmaier; Tom A Williams; Dörte Becher; Jörg Bernhardt; Tal Dagan; Alina V Goldberg; Christian Hacker; Neil Hall; Simon R Harris; T Martin Embley
The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.
Naiara Rodriguez-Ezpeleta; T Martin Embley
The SAR11 group of alpha-proteobacteria is not related to the origin of mitochondria.

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All Publications

2012: Tom A Williams; Cymon J Cox; Peter G Foster; Tom M W Nye; T Martin Embley
A congruent phylogenomic signal places eukaryotes within the Archaea.
Proceedings. Biological sciences / The Royal Society 2012;279(1749):4870-9.
2012: Eva Heinz; Robert P Hirt; John M Lucocq; Stephanie Markert; Sirintra Nakjang; Christophe J Noël; Thomas Rattei; Thomas Schweder; Daniel C Swan; Thomas Weinmaier; Tom A Williams; Dörte Becher; Jörg Bernhardt; Tal Dagan; Alina V Goldberg; Christian Hacker; Neil Hall; Simon R Harris; T Martin Embley
The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.
PLoS pathogens 2012;8(10):e1002979.
2012: Naiara Rodriguez-Ezpeleta; T Martin Embley
The SAR11 group of alpha-proteobacteria is not related to the origin of mitochondria.
PloS one 2012;7(1):e30520.
2011: James O McInerney; John F Allen; John M Archibald; Michael Y Galperin; Eugene V Koonin; Nick Lane; William F Martin; T Martin Embley
Planctomycetes and eukaryotes: a case of analogy not homology.
BioEssays : news and reviews in molecular, cellular and developmental biology 2011;33(11):810-7.
2011: Tom A Williams; T Martin Embley; Eva Heinz
Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses.
PloS one 2011;6(6):e21080.
2010: Karin Hjort; Alina V Goldberg; Anastasios Tsaousis; Robert Hirt; T Martin Embley
Diversity and reductive evolution of mitochondria among microbial eukaryotes.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2010;365(1541):713-27.
2009: Peter G Foster; Cymon J Cox; T Martin Embley
The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2009;364(1527):2197-207.
2009: U Cecilia Alsmark; thomas sicheritz-ponten; Peter G Foster; Robert Hirt; T Martin Embley
Horizontal gene transfer in eukaryotic parasites: a case study of Entamoeba histolytica and Trichomonas vaginalis.
Methods in molecular biology (Clifton, N.J.) 2009;532():489-500.
2008: Anastasios Tsaousis; Edmund R S Kunji; Alina V Goldberg; John M Lucocq; Robert Hirt; T Martin Embley
A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi.
Nature 2008;453(7194):553-6.
2008: Alina V Goldberg; Sabine Molik; Anastasios Tsaousis; Karina Neumann; Grit Kuhnke; Frederic Delbac; CHRISTIAN VIVARES; Robert Hirt; Roland Lill; T Martin Embley
Localization and functionality of microsporidian iron-sulphur cluster assembly proteins.
Nature 2008;452(7187):624-8.
2007: Pavel Dolezal; Andrew Dancis; Emmanuel Lesuisse; Robert Sutak; Ivan Hrdý; T Martin Embley; Jan Tachezy
Frataxin, a conserved mitochondrial protein, in the hydrogenosome of Trichomonas vaginalis.
Eukaryotic cell 2007;6(8):1431-8.
2007: Mark Wilkinson; James O McInerney; Robert Hirt; Peter G Foster; T Martin Embley
Of clades and clans: terms for phylogenetic relationships in unrooted trees.
Trends in ecology & evolution 2007;22(3):114-5.
2007: C G Clark; U C M Alsmark; M Tazreiter; Yumiko Saito-Nakano; Vahab Ali; S Marion; C Weber; Chandrama Mukherjee; Iris Bruchhaus; Egbert Tannich; M Leippe; thomas sicheritz-ponten; Peter G Foster; J Samuelson; Christophe Noel; Robert Hirt; T Martin Embley; Carol A Gilchrist; B J Mann; U Singh; John P Ackers; S Bhattacharya; A Bhattacharya; Anuradha Lohia; Nancy Guillén; Michael Duchêne; Tomoyoshi Nozaki; N Hall
Structure and content of the Entamoeba histolytica genome.
Advances in parasitology 2007;65():51-190.
2006: T Martin Embley
Multiple secondary origins of the anaerobic lifestyle in eukaryotes.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2006;361(1470):1055-67.
2006: Thomas Cavalier-Smith; Martin Brasier; T Martin Embley
Introduction: How and when did microbes change the world?
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2006;361(1470):845-50.
2006: Joel B Dacks; Patricia L Dyal; T Martin Embley; Mark van der Giezen
Hydrogenosomal succinyl-CoA synthetase from the rumen-dwelling fungus Neocallimastix patriciarum; an energy-producing enzyme of mitochondrial origin.
Gene 2006;373():75-82.
2006: T Martin Embley; William Martin
Eukaryotic evolution, changes and challenges.
Nature 2006;440(7084):623-30.
2005: Vladimír Hampl; David S Horner; Patricia L Dyal; Jaroslav Kulda; Jaroslav Flegr; Peter G Foster; T Martin Embley
Inference of the phylogenetic position of oxymonads based on nine genes: support for metamonada and excavata.
Molecular biology and evolution 2005;22(12):2508-18.
2005: Gordon Webster; T Martin Embley; Thomas E Freitag; Zena Smith; James I Prosser
Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils.
Environmental microbiology 2005;7(5):676-84.
2005: Ka Wai Chan; Dirk-Jan Slotboom; Sian Cox; T Martin Embley; Olivier Fabre; Mark van der Giezen; Marilyn Harding; David S Horner; Edmund R S Kunji; Gloria León-Avila; Jorge Tovar
A novel ADP/ATP transporter in the mitosome of the microaerophilic human parasite Entamoeba histolytica.
Current biology : CB 2005;15(8):737-42.
2005: Graeme W Nicol; Dagmar Tscherko; T Martin Embley; James I Prosser
Primary succession of soil Crenarchaeota across a receding glacier foreland.
Environmental microbiology 2005;7(3):337-47.
2004: Ivan Hrdy; Robert Hirt; Pavel Dolezal; Lucie Bardonová; Peter G Foster; Jan Tachezy; T Martin Embley
Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I.
Nature 2004;432(7017):618-22.
2004: William Martin; T Martin Embley
Evolutionary biology: Early evolution comes full circle.
Nature 2004;431(7005):134-7.
2004: Kevin J Purdy; T D Cresswell-Maynard; David B Nedwell; Terry J McGenity; William D Grant; Kenneth N Timmis; T Martin Embley
Isolation of haloarchaea that grow at low salinities.
Environmental microbiology 2004;6(6):591-5.
2004: Graham H Coombs; Gareth D Westrop; Pavel Suchan; Gabriela Puzova; Robert Hirt; T Martin Embley; Jeremy C Mottram; Sylke Müller
The amitochondriate eukaryote Trichomonas vaginalis contains a divergent thioredoxin-linked peroxiredoxin antioxidant system.
The Journal of biological chemistry 2004;279(7):5249-56.
2003: T Martin Embley; Mark van der Giezen; David S Horner; Patricia L Dyal; Samantha Bell; Peter G Foster
Hydrogenosomes, mitochondria and early eukaryotic evolution.
IUBMB life 2003;55(7):387-95.
2003: Robert Hirt; Kalpana Lal; J Pinxteren; Jim Warwicker; B Healy; Graham H Coombs; Mark Field; T Martin Embley
Biochemical and genetic evidence for a family of heterotrimeric G-proteins in Trichomonas vaginalis.
Molecular and biochemical parasitology 2003;129(2):179-89.
2003: Mark van der Giezen; Graeme M Birdsey; David S Horner; John M Lucocq; Patricia L Dyal; Marlene Benchimol; Christopher J Danpure; T Martin Embley
Fungal hydrogenosomes contain mitochondrial heat-shock proteins.
Molecular biology and evolution 2003;20(7):1051-61.
2003: Kevin J Purdy; M A Munson; T Cresswell-Maynard; David B Nedwell; T Martin Embley
Use of 16S rRNA-targeted oligonucleotide probes to investigate function and phylogeny of sulphate-reducing bacteria and methanogenic archaea in a UK estuary.
FEMS microbiology ecology 2003;44(3):361-71.
2003: Kevin J Purdy; David B Nedwell; T Martin Embley
Analysis of the sulfate-reducing bacterial and methanogenic archaeal populations in contrasting Antarctic sediments.
Applied and environmental microbiology 2003;69(6):3181-91.
2003: Thomas A Richards; Robert Hirt; Bryony A P Williams; T Martin Embley
Horizontal gene transfer and the evolution of parasitic protozoa.
Protist 2003;154(1):17-32.
2003: T Martin Embley; Mark van der Giezen; David S Horner; Patricia L Dyal; Peter Foster
Mitochondria and hydrogenosomes are two forms of the same fundamental organelle.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2003;358(1429):191-201; discussion 201-2.
2003: Jan O Andersson; Asa M Sjögren; Lesley A M Davis; T Martin Embley; Andrew J Roger
Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes.
Current biology : CB 2003;13(2):94-104.
2002: Robert Hirt; Natalie Harriman; Andrey V Kajava; T Martin Embley
A novel potential surface protein in Trichomonas vaginalis contains a leucine-rich repeat shared by micro-organisms from all three domains of life.
Molecular and biochemical parasitology 2002;125(1-2):195-9.
2002: Bryony A P Williams; Robert Hirt; John M Lucocq; T Martin Embley
A mitochondrial remnant in the microsporidian Trachipleistophora hominis.
Nature 2002;418(6900):865-9.
2002: Elizabeth A Davidson; Mark van der Giezen; David S Horner; T Martin Embley; Christopher J Howe
An [Fe] hydrogenase from the anaerobic hydrogenosome-containing fungus Neocallimastix frontalis L2.
Gene 2002;296(1-2):45-52.
2002: Kevin J Purdy; T Martin Embley; David B Nedwell
The distribution and activity of sulphate reducing bacteria in estuarine and coastal marine sediments.
Antonie van Leeuwenhoek 2002;81(1-4):181-7.
2002: James I Prosser; T Martin Embley
Cultivation-based and molecular approaches to characterisation of terrestrial and aquatic nitrifiers.
Antonie van Leeuwenhoek 2002;81(1-4):165-79.
2002: Lidya Sánchez; David S Horner; Dorothy Moore; Katrin Henze; T Martin Embley; Miklós Müller
Fructose-1,6-bisphosphate aldolases in amitochondriate protists constitute a single protein subfamily with eubacterial relationships.
Gene 2002;295(1):51-9.
2002: Robert Hirt; Sylke Müller; T Martin Embley; Graham H Coombs
The diversity and evolution of thioredoxin reductase: new perspectives.
Trends in parasitology 2002;18(7):302-8.
2002: Nardia J Baxter; Robert Hirt; Levente Bodrossy; Kornel L Kovacs; T Martin Embley; James I Prosser; J Colin Murrell
The ribulose-1,5-bisphosphate carboxylase/oxygenase gene cluster of Methylococcus capsulatus (Bath).
Archives of microbiology 2002;177(4):279-89.
2002: David S Horner; Burkhard Heil; Thomas Happe; T Martin Embley
Iron hydrogenases--ancient enzymes in modern eukaryotes.
Trends in biochemical sciences 2002;27(3):148-53.
2002: Mark van der Giezen; Dirk-Jan Slotboom; David S Horner; Patricia L Dyal; Marilyn Harding; Gang-Ping Xue; T Martin Embley; Edmund R S Kunji
Conserved properties of hydrogenosomal and mitochondrial ADP/ATP carriers: a common origin for both organelles.
The EMBO journal 2002;21(4):572-9.
2002: T Martin Embley
Anaerobic eukaryotes and their archaebacterial endosymbionts.
Environmental microbiology 2002;4(1):15-6.
2002: Gordon Webster; T Martin Embley; James I Prosser
Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia pxidizer populations.
Applied and environmental microbiology 2002;68(1):20-30.
2001: Katrin Henze; David S Horner; S Suguri; D V Moore; LB Sánchez; Miklós Müller; T Martin Embley
Unique phylogenetic relationships of glucokinase and glucosephosphate isomerase of the amitochondriate eukaryotes Giardia intestinalis, Spironucleus barkhanus and Trichomonas vaginalis.
Gene 2001;281(1-2):123-31.
2001: David S Horner; T Martin Embley
Chaperonin 60 phylogeny provides further evidence for secondary loss of mitochondria among putative early-branching eukaryotes.
Molecular biology and evolution 2001;18(10):1970-5.
2000: David S Horner; Peter G Foster; T Martin Embley
Iron hydrogenases and the evolution of anaerobic eukaryotes.
Molecular biology and evolution 2000;17(11):1695-709.
1999: David S Horner; Robert Hirt; T Martin Embley
A single eubacterial origin of eukaryotic pyruvate: ferredoxin oxidoreductase genes: implications for the evolution of anaerobic eukaryotes.
Molecular biology and evolution 1999;16(9):1280-91.
1999: C J Phillips; Zena Smith; T Martin Embley; James I Prosser
Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in the Northwestern Mediterranean Sea.
Applied and environmental microbiology 1999;65(2):779-86.
1999: Robert Hirt; J M Logsdon; B Healy; M W Dorey; W F Doolittle; T Martin Embley
Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(2):580-5.
1999: Allison E McCaig; C J Phillips; John R Stephen; George A Kowalchuk; S M Harvey; R A Herbert; T Martin Embley; James I Prosser
Nitrogen cycling and community structure of proteobacterial beta-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments.
Applied and environmental microbiology 1999;65(1):213-20.
1998: T Martin Embley; Robert Hirt
Early branching eukaryotes?
Current opinion in genetics & development 1998;8(6):624-9.
1997: M A Munson; David B Nedwell; T Martin Embley
Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh.
Applied and environmental microbiology 1997;63(12):4729-33.
1997: Robert Hirt; B Healy; C R Vossbrinck; E U Canning; T Martin Embley
A mitochondrial Hsp70 orthologue in Vairimorpha necatrix: molecular evidence that microsporidia once contained mitochondria.
Current biology : CB 1997;7(12):995-8.
1997: George A Kowalchuk; John R Stephen; Wietse de Boer; James I Prosser; T Martin Embley; JW Woldendorp
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments.
Applied and environmental microbiology 1997;63(4):1489-97.
1997: Mark van der Giezen; K Björn Rechinger; I Svendsen; R Durand; Robert Hirt; Michel Fèvre; T Martin Embley; RA Prins
A mitochondrial-like targeting signal on the hydrogenosomal malic enzyme from the anaerobic fungus Neocallimastix frontalis: support for the hypothesis that hydrogenosomes are modified mitochondria.
Molecular microbiology 1997;23(1):11-21.
1996: John R Stephen; Allison E McCaig; Z Smith; James I Prosser; T Martin Embley
Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria.
Applied and environmental microbiology 1996;62(11):4147-54.
1996: D S Horner; Robert Hirt; S Kilvington; D Lloyd; T Martin Embley
Molecular data suggest an early acquisition of the mitochondrion endosymbiont.
Proceedings. Biological sciences / The Royal Society 1996;263(1373):1053-9.
1995: T Martin Embley; Bland J Finlay; P L Dyal; Robert Hirt; M Wilkinson; A G Williams
Multiple origins of anaerobic ciliates with hydrogenosomes within the radiation of aerobic ciliates.
Proceedings. Biological sciences / The Royal Society 1995;262(1363):87-93.
1995: P L Dyal; S Hope; D M Roberts; T Martin Embley
Use of the PCR and fluorescent probes to recover SSU rRNA gene sequences from single cells of the ciliate protozoon Spathidium.
Molecular ecology 1995;4(4):499-503.
1995: Robert Hirt; P L Dyal; M Wilkinson; Bland J Finlay; D M Roberts; T Martin Embley
Phylogenetic relationships among karyorelictids and heterotrichs inferred from small subunit rRNA sequences: resolution at the base of the ciliate tree.
Molecular phylogenetics and evolution 1995;4(1):77-87.
1994: T Martin Embley; Robert Hirt; D M Williams
Biodiversity at the molecular level: the domains, kingdoms and phyla of life.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 1994;345(1311):21-33.
1994: Allison E McCaig; T Martin Embley; James I Prosser
Molecular analysis of enrichment cultures of marine ammonia oxidisers.
FEMS microbiology letters 1994;120(3):363-7.
1994: H P McVeigh; J Munro; T Martin Embley
The phylogenetic position of Pseudoamycolata halophobica (Akimov et al. 1989) and a proposal to reclassify it as Pseudonocardia halophobica.
International journal of systematic bacteriology 1994;44(2):300-2.
1994: Bland J Finlay; G Esteban; K J Clarke; A G Williams; T Martin Embley; Robert Hirt
Some rumen ciliates have endosymbiotic methanogens.
FEMS microbiology letters 1994;117(2):157-61.
1994: T Martin Embley; Bland J Finlay
The use of small subunit rRNA sequences to unravel the relationships between anaerobic ciliates and their methanogen endosymbionts.
Microbiology (Reading, England) 1994;140 ( Pt 2)():225-35.
1993: Ken J Clarke; Genoveva F Esteban; Bland J Finlay; B E Guhl; T Martin Embley
Cyclidium porcatum n. sp.: a Free-living anaerobic scuticociliate containing a stable complex of hydrogenosomes, eubacteria and archaeobacteria.
European journal of protistology 1993;29(2):262-70.
1993: Bland J Finlay; T Martin Embley; T Fenchel
A new polymorphic methanogen, closely related to Methanocorpusculum parvum, living in stable symbiosis within the anaerobic ciliate Trimyema sp.
Journal of general microbiology 1993;139(2):371-8.
1993: T Martin Embley; Bland J Finlay
Systematic and morphological diversity of endosymbiotic methanogens in anaerobic ciliates.
Antonie van Leeuwenhoek 1993;64(3-4):261-71.
1992: T Martin Embley; P Dyal; S Kilvington
A group I intron in the small subunit ribosomal RNA gene from Naegleria andersoni ssp. andersoni strain PPMFB-6.
Nucleic acids research 1992;20(23):6411.
1992: T Martin Embley; Bland J Finlay; S Brown
RNA sequence analysis shows that the symbionts in the ciliate Metopus contortus are polymorphs of a single methanogen species.
FEMS microbiology letters 1992;76(1-2):57-61.
1992: T Martin Embley; Bland J Finlay; R H Thomas; P L Dyal
The use of rRNA sequences and fluorescent probes to investigate the phylogenetic positions of the anaerobic ciliate Metopus palaeformis and its archaeobacterial endosymbiont.
Journal of general microbiology 1992;138(7):1479-87.
1991: T Martin Embley
The linear PCR reaction: a simple and robust method for sequencing amplified rRNA genes.
Letters in applied microbiology 1991;13(3):171-4.