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Vernon Anderson

Research Profile

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Amino Acid Sequences

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TOP 3
Stephanie R Harris; Michelle A Puchowicz; Sushabhan Sadhukhan; Robert G Salomon; Chuan Shi; Gregory Tochtrop; Hua Wang; Guo-Fang Zhang; Vernon E Anderson; Henri Brunengraber
Metabolomics and mass isotopomer analysis as a strategy for pathway discovery: pyrrolyl and cyclopentenyl derivatives of the pro-drug of abuse, levulinate.
Guo-Fang Zhang; Vernon E Anderson; Priya Chatterjee; Chia-Ying Chuang; Rafael A Ibarra; Stephanie M Lauden; Sushabhan Sadhukhan; Sophia Sushailo; Gregory Tochtrop; Henri Brunengraber
Metabolism of γ-hydroxybutyrate in perfused rat livers.
Eric L Christian; Vernon E Anderson; Michael E Harris
Deconvolution of Raman spectroscopic signals for electrostatic, H-bonding, and inner-sphere interactions between ions and dimethyl phosphate in solution.

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All Publications

2013: Stephanie R Harris; Michelle A Puchowicz; Sushabhan Sadhukhan; Robert G Salomon; Chuan Shi; Gregory Tochtrop; Hua Wang; Guo-Fang Zhang; Vernon E Anderson; Henri Brunengraber
Metabolomics and mass isotopomer analysis as a strategy for pathway discovery: pyrrolyl and cyclopentenyl derivatives of the pro-drug of abuse, levulinate.
Chemical research in toxicology 2013;26(2):213-20.
2012: Guo-Fang Zhang; Vernon E Anderson; Priya Chatterjee; Chia-Ying Chuang; Rafael A Ibarra; Stephanie M Lauden; Sushabhan Sadhukhan; Sophia Sushailo; Gregory Tochtrop; Henri Brunengraber
Metabolism of γ-hydroxybutyrate in perfused rat livers.
The Biochemical journal 2012;444(2):333-41.
2011: Eric L Christian; Vernon E Anderson; Michael E Harris
Deconvolution of Raman spectroscopic signals for electrostatic, H-bonding, and inner-sphere interactions between ions and dimethyl phosphate in solution.
Journal of inorganic biochemistry 2011;105(4):538-47.
2011: Junhwan Kim; Paul E Minkler; Robert G Salomon; Vernon E Anderson; Charles L Hoppel
Cardiolipin: characterization of distinct oxidized molecular species.
Journal of lipid research 2011;52(1):125-35.
2010: Myriam Rodriguez; Junhwan Kim; Grace B Delos Santos; Kashif Azizuddin; Jeffrey Berlin; Vernon E Anderson; Malcolm E Kenney; Nancy L Oleinick
Binding to and photo-oxidation of cardiolipin by the phthalocyanine photosensitizer Pc 4.
Journal of biomedical optics 2010;15(5):051604.
2010: Junhwan Kim; Hisashi Fujioka; Nancy L Oleinick; Vernon E Anderson
Photosensitization of intact heart mitochondria by the phthalocyanine Pc 4: Correlation of structural and functional deficits with cytochrome c release.
Free radical biology & medicine 2010;49(5):726-32.
2010: Sarah M Drawz; Christopher R Bethel; Venkata Ramana Doppalapudi; Anjaneyulu Sheri; Sundar Ram Reddy Pagadala; Andrea Hujer; Marion J Skalweit; Vernon E Anderson; Shu G Chen; John D Buynak; Robert A Bonomo
Penicillin sulfone inhibitors of class D beta-lactamases.
Antimicrobial agents and chemotherapy 2010;54(4):1414-24.
2010: Xiaochun Zhu; Xiaoxia Tang; Jianye Zhang; Gregory P Tochtrop; Vernon E Anderson; Lawrence M Sayre
Mass spectrometric evidence for the existence of distinct modifications of different proteins by 2(E),4(E)-decadienal.
Chemical research in toxicology 2010;23(3):467-73.
2009: Xiaochun Zhu; Xiaoxia Tang; Vernon E Anderson; Lawrence M Sayre
Mass spectrometric characterization of protein modification by the products of nonenzymatic oxidation of linoleic acid.
Chemical research in toxicology 2009;22(8):1386-97.
2009: Xiaochun Zhu; Vernon E Anderson; Lawrence M Sayre
Charge-derivatized amino acids facilitate model studies on protein side-chain modifications by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Rapid communications in mass spectrometry : RCM 2009;23(14):2113-24.
2009: Rajan Kombu; Guo-Fang Zhang; Rime Abbas; John J Mieyal; Vernon E Anderson; Joanne K Kelleher; Juan R Sanabria; Henri Brunengraber
Dynamics of glutathione and ophthalmate traced with 2H-enriched body water in rats and humans.
American journal of physiology. Endocrinology and metabolism 2009;297(1):E260-9.
2009: Xiaochun Zhu; Molly M Gallogly; John J Mieyal; Vernon E Anderson; Lawrence M Sayre
Covalent cross-linking of glutathione and carnosine to proteins by 4-oxo-2-nonenal.
Chemical research in toxicology 2009;22(6):1050-9.
2009: Priyaranjan Pattanaik; Christopher R Bethel; Andrea Hujer; Kristine M Hujer; Anne M Distler; Magdalena Taracila; Vernon E Anderson; Thomas R Fritsche; Ronald N Jones; Sundar Ram Reddy Pagadala; Focco Van Den Akker; John D Buynak; Robert A Bonomo
Strategic design of an effective beta-lactamase inhibitor: LN-1-255, a 6-alkylidene-2'-substituted penicillin sulfone.
The Journal of biological chemistry 2009;284(2):945-53.
2008: Christopher R Bethel; Anne M Distler; Mark W Ruszczycky; Marianne P Carey; Paul R Carey; Andrea Hujer; Magdalena Taracila; Marion S Helfand; Jodi M Thomson; Matthew Kalp; Vernon E Anderson; David A Leonard; Kristine M Hujer; Takao Abe; Aranapakam M Venkatesan; Tarek S Mansour; Robert A Bonomo
Inhibition of OXA-1 beta-lactamase by penems.
Antimicrobial agents and chemotherapy 2008;52(9):3135-43.
2008: Lili Yang; Rajan Kombu; Takhar Kasumov; Shu-Han Zhu; Andrea V Cendrowski; France David; Vernon E Anderson; Joanne K Kelleher; Henri Brunengraber
Metabolomic and mass isotopomer analysis of liver gluconeogenesis and citric acid cycle. I. Interrelation between gluconeogenesis and cataplerosis; formation of methoxamates from aminooxyacetate and ketoacids.
The Journal of biological chemistry 2008;283(32):21978-87.
2008: Lili Yang; Takhar Kasumov; Rajan Kombu; Shu-Han Zhu; Andrea V Cendrowski; France David; Vernon E Anderson; Joanne K Kelleher; Henri Brunengraber
Metabolomic and mass isotopomer analysis of liver gluconeogenesis and citric acid cycle: II. Heterogeneity of metabolite labeling pattern.
The Journal of biological chemistry 2008;283(32):21988-96.
2008: Zhenyu Dai; Benlian Wang; Gang Sun; Xingjun Fan; Vernon E Anderson; Vincent M Monnier
Identification of glucose-derived cross-linking sites in ribonuclease A.
Journal of proteome research 2008;7(7):2756-68.
2008: Junhwan Kim; Myriam Rodriguez; Ming Guo; Malcolm E Kenney; Nancy L Oleinick; Vernon E Anderson
Oxidative modification of cytochrome c by singlet oxygen.
Free radical biology & medicine 2008;44(9):1700-11.
2008: Monica A Totir; Jooyoung Cha; Akihiro Ishiwata; Benlian Wang; Anjaneyulu Sheri; Vernon E Anderson; John Buynak; Shahriar Mobashery; Paul R Carey
Why clinically used tazobactam and sulbactam are poor inhibitors of OXA-10 beta-lactamase: Raman crystallographic evidence.
Biochemistry 2008;47(13):4094-101.
2007: Adam G Cassano; Benlian Wang; David R Anderson; Stephen Previs; Michael E Harris; Vernon E Anderson
Inaccuracies in selected ion monitoring determination of isotope ratios obviated by profile acquisition: nucleotide 18O/16O measurements.
Analytical biochemistry 2007;367(1):28-39.
2007: Benlian Wang; Gang Sun; David R Anderson; Minghong Jia; Stephen Previs; Vernon E Anderson
Isotopologue distributions of peptide product ions by tandem mass spectrometry: quantitation of low levels of deuterium incorporation.
Analytical biochemistry 2007;367(1):40-8.
2007: Takhar Kasumov; Andrea V Cendrowski; France David; Kathryn A Jobbins; Vernon E Anderson; Henri Brunengraber
Mass isotopomer study of anaplerosis from propionate in the perfused rat heart.
Archives of biochemistry and biophysics 2007;463(1):110-7.
2007: Lisa A Kuttner-Kondo; Dennis E Hourcade; Vernon E Anderson; Nasima Muqim; Lynne Mitchell; Dinesh C Soares; Paul N Barlow; M Edward Medof
Structure-based mapping of DAF active site residues that accelerate the decay of C3 convertases.
The Journal of biological chemistry 2007;282(25):18552-62.
2006: Mark W Ruszczycky; Vernon E Anderson
Interpretation of V/K isotope effects for enzymatic reactions exhibiting multiple isotopically sensitive steps.
Journal of theoretical biology 2006;243(3):328-42.
2006: Christopher R Bethel; Andrea Hujer; Kristine M Hujer; Jodi M Thomson; Mark W Ruszczycky; Vernon E Anderson; Marianne Pusztai-Carey; Magdalena Taracila; Marion S Helfand; Robert A Bonomo
Role of Asp104 in the SHV beta-lactamase.
Antimicrobial agents and chemotherapy 2006;50(12):4124-31.
2006: Fang Bian; Takhar Kasumov; Kathryn A Jobbins; Paul E Minkler; Vernon E Anderson; Janos Kerner; Charles L Hoppel; Henri Brunengraber
Competition between acetate and oleate for the formation of malonyl-CoA and mitochondrial acetyl-CoA in the perfused rat heart.
Journal of molecular and cellular cardiology 2006;41(5):868-75.
2006: Pius S Padayatti; Anjaneyulu Sheri; Monica A Totir; Marion S Helfand; Marianne P Carey; Vernon E Anderson; Paul R Carey; Christopher R Bethel; Robert A Bonomo; John D Buynak; Focco Van Den Akker
Rational design of a beta-lactamase inhibitor achieved via stabilization of the trans-enamine intermediate: 1.28 A crystal structure of wt SHV-1 complex with a penam sulfone.
Journal of the American Chemical Society 2006;128(40):13235-42.
2006: Vernon E Anderson; Mark W Ruszczycky; Michael E Harris
Activation of oxygen nucleophiles in enzyme catalysis.
Chemical reviews 2006;106(8):3236-51.
2006: Xia Guo; Frank E Campbell; Lei Sun; Eric L Christian; Vernon E Anderson; Michael E Harris
RNA-dependent folding and stabilization of C5 protein during assembly of the E. coli RNase P holoenzyme.
Journal of molecular biology 2006;360(1):190-203.
2006: Nakul C Maiti; Yuping Zhu; Ian Carmichael; Anthony S Serianni; Vernon E Anderson
1JCH correlates with alcohol hydrogen bond strength.
The Journal of organic chemistry 2006;71(7):2878-80.
2006: Mihaela M Apetri; Nakul C Maiti; Michael G Zagorski; Paul R Carey; Vernon E Anderson
Secondary structure of alpha-synuclein oligomers: characterization by raman and atomic force microscopy.
Journal of molecular biology 2006;355(1):63-71.
2005: Deley Sulton; Doritza Pagan-Rodriguez; Xiang Zhou; Yiding Liu; Andrea Hujer; Christopher R Bethel; Marion S Helfand; Jodi M Thomson; Vernon E Anderson; John D Buynak; Lily M Ng; Robert A Bonomo
Clavulanic acid inactivation of SHV-1 and the inhibitor-resistant S130G SHV-1 beta-lactamase. Insights into the mechanism of inhibition.
The Journal of biological chemistry 2005;280(42):35528-36.
2005: Kristine M Hujer; Nashaat S Hamza; Andrea Hujer; Federico Perez; Marion S Helfand; Christopher R Bethel; Jodi M Thomson; Vernon E Anderson; Miriam Barlow; Louis B Rice; Fred C Tenover; Robert A Bonomo
Identification of a new allelic variant of the Acinetobacter baumannii cephalosporinase, ADC-7 beta-lactamase: defining a unique family of class C enzymes.
Antimicrobial agents and chemotherapy 2005;49(7):2941-8.
2005: Andrea Hujer; Malgosia Kania; Thomas Gerken; Vernon E Anderson; John D Buynak; Xiaoxia Ge; Patrick Caspers; Malcolm G P Page; Louis B Rice; Robert A Bonomo
Structure-activity relationships of different beta-lactam antibiotics against a soluble form of Enterococcus faecium PBP5, a type II bacterial transpeptidase.
Antimicrobial agents and chemotherapy 2005;49(2):612-8.
2005: Gang Sun; Vernon E Anderson
A strategy for distinguishing modified peptides based on post-digestion 18O labeling and mass spectrometry.
Rapid communications in mass spectrometry : RCM 2005;19(19):2849-56.
2005: Vernon E Anderson
Quantifying energetic contributions to ground state destabilization.
Archives of biochemistry and biophysics 2005;433(1):27-33.
2004: Benedicta N Nukuna; Marc S Penn; Vernon E Anderson; Stanley L Hazen
Latency and substrate binding globally reduce solvent accessibility of plasminogen activator inhibitor type 1 (PAI-1). An adaptation of PAI-1 conformer crystal structures by hydrogen-deuterium exchange.
The Journal of biological chemistry 2004;279(48):50132-41.
2004: Benedicta N Nukuna; Gang Sun; Vernon E Anderson
Hydroxyl radical oxidation of cytochrome c by aerobic radiolysis.
Free radical biology & medicine 2004;37(8):1203-13.
2004: Adam G Cassano; Vernon E Anderson; Michael E Harris
Analysis of solvent nucleophile isotope effects: evidence for concerted mechanisms and nucleophilic activation by metal coordination in nonenzymatic and ribozyme-catalyzed phosphodiester hydrolysis.
Biochemistry 2004;43(32):10547-59.
2004: Paul E Minkler; Vernon E Anderson; Nakul C Maiti; Janos Kerner; Charles L Hoppel
Isolation and identification of two isomeric forms of malonyl-coenzyme A in commercial malonyl-coenzyme A.
Analytical biochemistry 2004;328(2):203-9.
2004: Doritza Pagan-Rodriguez; Xiang Zhou; Reiko Simmons; Christopher R Bethel; Andrea Hujer; Marion S Helfand; Zhaoyan Jin; Baochuan Guo; Vernon E Anderson; Lily M Ng; Robert A Bonomo
Tazobactam inactivation of SHV-1 and the inhibitor-resistant Ser130 -->Gly SHV-1 beta-lactamase: insights into the mechanism of inhibition.
The Journal of biological chemistry 2004;279(19):19494-501.
2004: Gang Sun; Vernon E Anderson
Prevention of artifactual protein oxidation generated during sodium dodecyl sulfate-gel electrophoresis.
Electrophoresis 2004;25(7-8):959-65.
2004: Nakul C Maiti; Mihaela M Apetri; Michael G Zagorski; Paul R Carey; Vernon E Anderson
Raman spectroscopic characterization of secondary structure in natively unfolded proteins: alpha-synuclein.
Journal of the American Chemical Society 2004;126(8):2399-408.
2004: Mark W Ruszczycky; Vernon E Anderson
Tartrate dehydrogenase reductive decarboxylation: stereochemical generation of diastereotopically deuterated hydroxymethylenes.
Bioorganic chemistry 2004;32(1):51-61.
2004: Adam G Cassano; Vernon E Anderson; Michael E Harris
Understanding the transition states of phosphodiester bond cleavage: insights from heavy atom isotope effects.
Biopolymers 2004;73(1):110-29.
2003: Marion S Helfand; Christopher R Bethel; Andrea Hujer; Kristine M Hujer; Vernon E Anderson; Robert A Bonomo
Understanding resistance to beta-lactams and beta-lactamase inhibitors in the SHV beta-lactamase: lessons from the mutagenesis of SER-130.
The Journal of biological chemistry 2003;278(52):52724-9.
2003: Gang Sun; Michael T Kinter; Vernon E Anderson
Mass spectrometric characterization of mitochondrial electron transport complexes: subunits of the rat heart ubiquinol-cytochrome c reductase.
Journal of mass spectrometry : JMS 2003;38(5):531-9.
2003: Jill Katanik; Brendan J McCabe; Daniel Z Brunengraber; Visvanathan Chandramouli; Fumie J Nishiyama; Vernon E Anderson; Stephen Previs
Measuring gluconeogenesis using a low dose of 2H2O: advantage of isotope fractionation during gas chromatography.
American journal of physiology. Endocrinology and metabolism 2003;284(5):E1043-8.
2003: Jian Dong; Craig S Atwood; Vernon E Anderson; Sandra L Siedlak; Mark A. Smith; George Perry; Paul R Carey
Metal binding and oxidation of amyloid-beta within isolated senile plaque cores: Raman microscopic evidence.
Biochemistry 2003;42(10):2768-73.
2002: Andrea Hujer; Kristine M Hujer; Marion S Helfand; Vernon E Anderson; Robert A Bonomo
Amino acid substitutions at Ambler position Gly238 in the SHV-1 beta-lactamase: exploring sequence requirements for resistance to penicillins and cephalosporins.
Antimicrobial agents and chemotherapy 2002;46(12):3971-7.
2002: Adam G Cassano; Vernon E Anderson; Michael E Harris
Evidence for direct attack by hydroxide in phosphodiester hydrolysis.
Journal of the American Chemical Society 2002;124(37):10964-5.
2002: Frank E Campbell; Adam G Cassano; Vernon E Anderson; Michael E Harris
Pre-steady-state and stopped-flow fluorescence analysis of Escherichia coli ribonuclease III: insights into mechanism and conformational changes associated with binding and catalysis.
Journal of molecular biology 2002;317(1):21-40.
2002: Binqiu Liu; Yingqiang Wang; Kerry L Fillgrove; Vernon E Anderson
Triclosan inhibits enoyl-reductase of type I fatty acid synthase in vitro and is cytotoxic to MCF-7 and SKBr-3 breast cancer cells.
Cancer chemotherapy and pharmacology 2002;49(3):187-93.
2001: Kerry L Fillgrove; Vernon E Anderson
The mechanism of dienoyl-CoA reduction by 2,4-dienoyl-CoA reductase is stepwise: observation of a dienolate intermediate.
Biochemistry 2001;40(41):12412-21.
2001: Robert A Bonomo; J Liu; Y Chen; L Ng; Andrea Hujer; Vernon E Anderson
Inactivation of CMY-2 beta-lactamase by tazobactam: initial mass spectroscopic characterization.
Biochimica et biophysica acta 2001;1547(2):196-205.
2001: Benedicta N Nukuna; MB Goshe; Vernon E Anderson
Sites of hydroxyl radical reaction with amino acids identified by (2)H NMR detection of induced (1)H/(2)H exchange.
Journal of the American Chemical Society 2001;123(6):1208-14.
2000: Kerry L Fillgrove; Vernon E Anderson
Orientation of coenzyme A substrates, nicotinamide and active site functional groups in (Di)enoyl-coenzyme A reductases.
Biochemistry 2000;39(23):7001-11.
2000: MB Goshe; Y H Chen; Vernon E Anderson
Identification of the sites of hydroxyl radical reaction with peptides by hydrogen/deuterium exchange: prevalence of reactions with the side chains.
Biochemistry 2000;39(7):1761-70.
1999: Edward L Kean; Z Wei; Vernon E Anderson; N Zhang; Lawrence M Sayre
Regulation of the biosynthesis of N-acetylglucosaminylpyrophosphoryldolichol, feedback and product inhibition.
The Journal of biological chemistry 1999;274(48):34072-82.
1999: Kerry L Fillgrove; Vernon E Anderson; M Mizugaki
Cloning, expression, and purification of the functional 2,4-dienoyl-CoA reductase from rat liver mitochondria.
Protein expression and purification 1999;17(1):57-63.
1999: X Chen; Y H Chen; Vernon E Anderson
Protein cross-links: universal isolation and characterization by isotopic derivatization and electrospray ionization mass spectrometry.
Analytical biochemistry 1999;273(2):192-203.
1999: X Chen; Vernon E Anderson; Y H Chen
Isotope edited product ion assignment by alpha-N labeling of peptides with [2H3(50%)]2,4-dinitrofluorobenzene.
Journal of the American Society for Mass Spectrometry 1999;10(5):448-52.
1999: MB Goshe; Vernon E Anderson
Hydroxyl radical-induced hydrogen/deuterium exchange in amino acid carbon-hydrogen bonds.
Radiation research 1999;151(1):50-8.
1998: A M Fedoriw; H Liu; Vernon E Anderson; Pieter L deHaseth
Equilibrium and kinetic parameters of the sequence-specific interaction of Escherichia coli RNA polymerase with nontemplate strand oligodeoxyribonucleotides.
Biochemistry 1998;37(34):11971-9.
1998: D Yang; Frédérique Diraison; Michel Beylot; Daniel Z Brunengraber; M A Samols; Vernon E Anderson; Henri Brunengraber
Assay of low deuterium enrichment of water by isotopic exchange with [U-13C3]acetone and gas chromatography-mass spectrometry.
Analytical biochemistry 1998;258(2):315-21.
1995: M B Goshe; Vernon E Anderson
Determination of amino acid isotope ratios by electrospray ionization-mass spectrometry.
Analytical biochemistry 1995;231(2):387-92.
1994: Y Zhang; K C Agarwal; Michel Beylot; M V Soloviev; France David; M W Reider; Vernon E Anderson; Kou-Yi Tserng; Henri Brunengraber
Nonhomogeneous labeling of liver extra-mitochondrial acetyl-CoA. Implications for the probing of lipogenic acetyl-CoA via drug acetylation and for the production of acetate by the liver.
The Journal of biological chemistry 1994;269(15):11025-9.
1994: France David; Michel Beylot; M W Reider; Vernon E Anderson; Henri Brunengraber
Assay of the concentration and 13C enrichment of acetate and acetyl-CoA by gas chromatography-mass spectrometry.
Analytical biochemistry 1994;218(1):143-8.