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David Engelke

Research Profile

Chemicals & Drugs

Living Beings

Saccharomyces cerevisiae

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Physiology

Anatomy

Cell Nucleus

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Genes, Fungal

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Michael C Marvin; Scott C Walker; Carol A Fierke; David R Engelke
Binding and cleavage of unstructured RNA by nuclear RNase P.
Michael C Marvin; Ali Sarkeshik; Lars M Steinmetz; Scott C Walker; John R Yates; Sandra Clauder-Münster; David R Engelke
Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae.
Chris D M Rodley; Tyrone A Mills; Dave A Pai; David R Engelke; Justin M O'Sullivan
tRNA gene identity affects nuclear positioning.

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All Publications

2011: Michael C Marvin; Scott C Walker; Carol A Fierke; David R Engelke
Binding and cleavage of unstructured RNA by nuclear RNase P.
RNA (New York, N.Y.) 2011;17(8):1429-40.
2011: Michael C Marvin; Ali Sarkeshik; Lars M Steinmetz; Scott C Walker; John R Yates; Sandra Clauder-Münster; David R Engelke
Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae.
RNA (New York, N.Y.) 2011;17(8):1441-50.
2011: Chris D M Rodley; Tyrone A Mills; Dave A Pai; David R Engelke; Justin M O'Sullivan
tRNA gene identity affects nuclear positioning.
PloS one 2011;6(12):e29267.
2011: Scott C Walker; Paul D Good; Theresa A Gipson; David R Engelke
The dual use of RNA aptamer sequences for affinity purification and localization studies of RNAs and RNA-protein complexes.
Methods in molecular biology (Clifton, N.J.) 2011;714():423-44.
2010: Chatchawan Srisawat; David R Engelke
Selection of RNA aptamers that bind HIV-1 LTR DNA duplexes: strand invaders.
Nucleic acids research 2010;38(22):8306-15.
2010: Dave A Pai; David R Engelke
Spatial organization of genes as a component of regulated expression.
Chromosoma 2010;119(1):13-25.
2010: Anita K Hopper; Dave A Pai; David R Engelke
Cellular dynamics of tRNAs and their genes.
FEBS letters 2010;584(2):310-7.
2009: Michael C Marvin; David R Engelke
Broadening the mission of an RNA enzyme.
Journal of cellular biochemistry 2009;108(6):1244-51.
2009: Daniel J Coughlin; Tomas Babak; Chad Nihranz; Timothy R Hughes; David R Engelke
Prediction and verification of mouse tRNA gene families.
RNA biology 2009;6(2):195-202.
2009: John Hsieh; Scott C Walker; Carol A Fierke; David R Engelke
Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release.
RNA (New York, N.Y.) 2009;15(2):224-34.
2009: Michael C Marvin; David R Engelke
RNase P: increased versatility through protein complexity?
RNA biology 2009;6(1):40-2.
2008: Scott C Walker; David R Engelke
A protein-only RNase P in human mitochondria.
Cell 2008;135(3):412-4.
2008: Daniel J Coughlin; Jeffrey A Pleiss; Scott C Walker; Gregg B Whitworth; David R Engelke
Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(34):12218-23.
2008: Rebecca A Haeusler; Matthew Pratt-Hyatt; Paul D Good; Theresa A Gipson; David R Engelke
Clustering of yeast tRNA genes is mediated by specific association of condensin with tRNA gene transcription complexes.
Genes & development 2008;22(16):2204-14.
2008: Scott C Walker; Felicia H Scott; Chatchawan Srisawat; David R Engelke
RNA affinity tags for the rapid purification and investigation of RNAs and RNA-protein complexes.
Methods in molecular biology (Clifton, N.J.) 2008;488():23-40.
2007: Tanya V Aspinall; James M B Gordon; Hayley J Bennett; Panagiotis Karahalios; John-Paul Bukowski; Scott C Walker; David R Engelke; Johanna M Avis
Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture.
Nucleic acids research 2007;35(19):6439-50.
2006: Robyn D Moir; JaeHoon Lee; Rebecca A Haeusler; Neelam Desai; David R Engelke; Ian M Willis
Protein kinase A regulates RNA polymerase III transcription through the nuclear localization of Maf1.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(41):15044-9.
2006: Matthew J Pratt-Hyatt; Kevin M Kapadia; Thomas E Wilson; David R Engelke
Increased recombination between active tRNA genes.
DNA and cell biology 2006;25(6):359-64.
2006: Shaohua Xiao; John Hsieh; Rebecca L Nugent; Daniel J Coughlin; Carol A Fierke; David R Engelke
Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP.
RNA (New York, N.Y.) 2006;12(6):1023-37.
2006: Neocles Leontis; Russ B Altman; Helen Berman; Steven E Brenner; James W Brown; David R Engelke; Stephen C Harvey; Stephen R Holbrook; Fabrice Jossinet; Suzanna E Lewis; François Major; David H Mathews; Jane S Richardson; James R Williamson; Eric Westhof
The RNA Ontology Consortium: an open invitation to the RNA community.
RNA (New York, N.Y.) 2006;12(4):533-41.
2006: Scott C Walker; David R Engelke
Ribonuclease P: the evolution of an ancient RNA enzyme.
Critical reviews in biochemistry and molecular biology 2006;41(2):77-102.
2006: David R Engelke; Anita K Hopper
Modified view of tRNA: stability amid sequence diversity.
Molecular cell 2006;21(2):144-5.
2006: Rebecca A Haeusler; David R Engelke
Spatial organization of transcription by RNA polymerase III.
Nucleic acids research 2006;34(17):4826-36.
2005: Shaohua Xiao; Jeremy J Day-Storms; Chatchawan Srisawat; Carol A Fierke; David R Engelke
Characterization of conserved sequence elements in eukaryotic RNase P RNA reveals roles in holoenzyme assembly and tRNA processing.
RNA (New York, N.Y.) 2005;11(6):885-96.
2005: Li Wang; Rebecca A Haeusler; Paul D Good; Martin Thompson; Sapna Nagar; David R Engelke
Silencing near tRNA genes requires nucleolar localization.
The Journal of biological chemistry 2005;280(10):8637-9.
2004: Rebecca A Haeusler; David R Engelke
Genome organization in three dimensions: thinking outside the line.
Cell cycle (Georgetown, Tex.) 2004;3(3):273-5.
2003: Martin Thompson; Rebecca A Haeusler; Paul D Good; David R Engelke
Nucleolar clustering of dispersed tRNA genes.
Science (New York, N.Y.) 2003;302(5649):1399-401.
2003: Cynthia P Paul; Paul D Good; Shirley X L Li; Annette Kleihauer; John J Rossi; David R Engelke
Localized expression of small RNA inhibitors in human cells.
Molecular therapy : the journal of the American Society of Gene Therapy 2003;7(2):237-47.
2002: Chatchawan Srisawat; Felicia Houser-Scott; Edouard Bertrand; Shaohua Xiao; Robert H Singer; David R Engelke
An active precursor in assembly of yeast nuclear ribonuclease P.
RNA (New York, N.Y.) 2002;8(10):1348-60.
2002: Nils Walter; David R Engelke
Ribozymes: catalytic RNAs that cut things, make things, and do odd and useful jobs.
Biologist (London, England) 2002;49(5):199-203.
2002: Cynthia P Paul; Paul D Good; Ira Winer; David R Engelke
Effective expression of small interfering RNA in human cells.
Nature biotechnology 2002;20(5):505-8.
2002: Felicia Houser-Scott; Shaohua Xiao; Christopher E Millikin; Janice M Zengel; Lasse Lindahl; David R Engelke
Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(5):2684-9.
2002: Chatchawan Srisawat; David R Engelke
RNA affinity tags for purification of RNAs and ribonucleoprotein complexes.
Methods (San Diego, Calif.) 2002;26(2):156-61.
2002: Shaohua Xiao; Felicia Scott; Carol A Fierke; David R Engelke
Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes.
Annual review of biochemistry 2002;71():165-89.
2001: WA Ziehler; David R Engelke
Probing RNA structure with chemical reagents and enzymes.
Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.] 2001;Chapter 6():Unit 6.1.
2001: Chatchawan Srisawat; David R Engelke
Streptavidin aptamers: affinity tags for the study of RNAs and ribonucleoproteins.
RNA (New York, N.Y.) 2001;7(4):632-41.
2001: WA Ziehler; J Morris; F H Scott; C Millikin; David R Engelke
An essential protein-binding domain of nuclear RNase P RNA.
RNA (New York, N.Y.) 2001;7(4):565-75.
2001: Shaohua Xiao; Felicia Houser-Scott; David R Engelke
Eukaryotic ribonuclease P: increased complexity to cope with the nuclear pre-tRNA pathway.
Journal of cellular physiology 2001;187(1):11-20.
2001: Chatchawan Srisawat; Irwin J Goldstein; David R Engelke
Sephadex-binding RNA ligands: rapid affinity purification of RNA from complex RNA mixtures.
Nucleic acids research 2001;29(2):E4.
2001: Felicia Houser-Scott; WA Ziehler; David R Engelke
Saccharomyces cerevisiae nuclear ribonuclease P: structure and function.
Methods in enzymology 2001;342():101-17.
2000: A Kendall; M W Hull; Edouard Bertrand; Paul D Good; Robert H Singer; David R Engelke
A CBF5 mutation that disrupts nucleolar localization of early tRNA biosynthesis in yeast also suppresses tRNA gene-mediated transcriptional silencing.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(24):13108-13.
2000: WA Ziehler; J J Day; Carol A Fierke; David R Engelke
Effects of 5' leader and 3' trailer structures on pre-tRNA processing by nuclear RNase P.
Biochemistry 2000;39(32):9909-16.
2000: Thomas Pfeiffer; Apostolos Tekos; JM Warnecke; Denis Drainas; David R Engelke; Bertrand Séraphin; Roland K Hartmann
Effects of phosphorothioate modifications on precursor tRNA processing by eukaryotic RNase P enzymes.
Journal of molecular biology 2000;298(4):559-65.
2000: B C Thomas; J Chamberlain; David R Engelke; Peter A Gegenheimer
Evidence for an RNA-based catalytic mechanism in eukaryotic nuclear ribonuclease P.
RNA (New York, N.Y.) 2000;6(4):554-62.
1999: Catherine Browning; Laurence Cagnon; Paul D Good; John Rossi; David R Engelke; David M Markovitz
Potent inhibition of human immunodeficiency virus type 1 (HIV-1) gene expression and virus production by an HIV-2 tat activation-response RNA decoy.
Journal of virology 1999;73(6):5191-5.
1999: Patricia Dorn; David R Engelke; Antonieta Rodas; Regina Rosales; Sergio Melgar; B Brahney; J Flores; Carlota Monroy
Utility of the polymerase chain reaction in detection of Trypanosoma cruzi in Guatemalan Chagas' disease vectors.
The American journal of tropical medicine and hygiene 1999;60(5):740-5.
1998: Edouard Bertrand; Felicia Houser-Scott; A Kendall; Robert H Singer; David R Engelke
Nucleolar localization of early tRNA processing.
Genes & development 1998;12(16):2463-8.
1998: Joel R Chamberlain; Y Lee; William Stratton Lane; David R Engelke
Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP.
Genes & development 1998;12(11):1678-90.
1998: H Fan; JL Goodier; Joel R Chamberlain; David R Engelke; Richard J Maraia
5' processing of tRNA precursors can Be modulated by the human La antigen phosphoprotein.
Molecular and cellular biology 1998;18(6):3201-11.
1998: Qian Yang; Irwin J Goldstein; H Y Mei; David R Engelke
DNA ligands that bind tightly and selectively to cellobiose.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(10):5462-7.
1998: WA Ziehler; J Yang; Alexander V Kurochkin; P O Sandusky; Erik R P Zuiderweg; David R Engelke
Structural analysis of the P10/11-P12 RNA domain of yeast RNase P RNA and its interaction with magnesium.
Biochemistry 1998;37(10):3549-57.
1997: Y Lee; D W Kindelberger; J Y Lee; Shanna J MCClennen; J Chamberlain; David R Engelke
Nuclear pre-tRNA terminal structure and RNase P recognition.
RNA (New York, N.Y.) 1997;3(2):175-85.
1997: WA Ziehler; Y Lee; Eileen Pagán-Ramos; David R Engelke
An active domain of the nuclear RNase P RNA.
Nucleic acids symposium series 1997;(36):45-8.
1997: Paul D Good; A J Krikos; S X Li; Edouard Bertrand; N S Lee; L Giver; A Ellington; J A Zaia; J J Rossi; David R Engelke
Expression of small, therapeutic RNAs in human cell nuclei.
Gene therapy 1997;4(1):45-54.
1997: E Bertrand; Daniela Castanotto; C Zhou; C Carbonnelle; Nan Sook Lee; P Good; Saswati Chatterjee; Thierry Grange; R Pictet; D Kohn; David R Engelke; John J Rossi
The expression cassette determines the functional activity of ribozymes in mammalian cells by controlling their intracellular localization.
RNA (New York, N.Y.) 1997;3(1):75-88.
1996: Eileen Pagán-Ramos; Y Lee; David R Engelke
A conserved RNA motif involved in divalent cation utilization by nuclear RNase P.
RNA (New York, N.Y.) 1996;2(11):1100-9.
1996: J R Chamberlain; D W Kindelberger; David R Engelke
An RNase P RNA subunit mutation affects ribosomal RNA processing.
Nucleic acids research 1996;24(16):3158-66.
1996: Eileen Pagán-Ramos; Y Lee; David R Engelke
Mutational analysis of Saccharomyces cerevisiae nuclear RNase P: randomization of universally conserved positions in the RNA subunit.
RNA (New York, N.Y.) 1996;2(5):441-51.
1996: WA Ziehler; David R Engelke
Synthesis of small RNA transcripts with discrete 5' and 3' ends.
BioTechniques 1996;20(4):622-4.
1996: J R Chamberlain; A J Tranguch; Eileen Pagán-Ramos; David R Engelke
Eukaryotic nuclear RNase P: structures and functions.
Progress in nucleic acid research and molecular biology 1996;55():87-119.
1995: David R Engelke; Eileen Pagán-Ramos; A J Tranguch
Structure-function analysis in nuclear RNase P RNA.
Molecular biology reports 1995;22(2-3):157-60.
1995: Eileen Pagán-Ramos; A J Tranguch; James Nolan; N R Pace; David R Engelke
Analysis of conserved positions in nuclear RNase P RNA.
Nucleic acids symposium series 1995;(33):89-91.
1994: Paul D Good; David R Engelke
Yeast expression vectors using RNA polymerase III promoters.
Gene 1994;151(1-2):209-14.
1994: A J Tranguch; D W Kindelberger; C E Rohlman; J Y Lee; David R Engelke
Structure-sensitive RNA footprinting of yeast nuclear ribonuclease P.
Biochemistry 1994;33(7):1778-87.
1994: M W Hull; J Erickson; M Johnston; David R Engelke
tRNA genes as transcriptional repressor elements.
Molecular and cellular biology 1994;14(2):1266-77.
1994: Eileen Pagán-Ramos; A J Tranguch; D W Kindelberger; David R Engelke
Replacement of the Saccharomyces cerevisiae RPR1 gene with heterologous RNase P RNA genes.
Nucleic acids research 1994;22(2):200-7.
1993: Jon M Huibregtse; Paul D Good; G T Marczynski; Judith A Jaehning; David R Engelke
Gal4 protein binding is required but not sufficient for derepression and induction of GAL2 expression.
The Journal of biological chemistry 1993;268(30):22219-22.
1993: A J Tranguch; David R Engelke
Comparative structural analysis of nuclear RNase P RNAs from yeast.
The Journal of biological chemistry 1993;268(19):14045-55.
1991: J Y Lee; C F Evans; David R Engelke
Expression of RNase P RNA in Saccharomyces cerevisiae is controlled by an unusual RNA polymerase III promoter.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(16):6986-90.
1991: C F Evans; David R Engelke
Binding of yeast TFIIIC to tRNA gene bipartite internal promoters: analysis of physical effects on the intervening DNA.
Biochemical and biophysical research communications 1991;176(2):826-32.
1991: J Y Lee; C E Rohlman; L A Molony; David R Engelke
Characterization of RPR1, an essential gene encoding the RNA component of Saccharomyces cerevisiae nuclear RNase P.
Molecular and cellular biology 1991;11(2):721-30.
1991: Jon M Huibregtse; David R Engelke
Direct sequence and footprint analysis of yeast DNA by primer extension.
Methods in enzymology 1991;194():550-62.
1991: M W Hull; G Thomas; Jon M Huibregtse; David R Engelke
Protein-DNA interactions in vivo--examining genes in Saccharomyces cerevisiae and Drosophila melanogaster by chromatin footprinting.
Methods in cell biology 1991;35():383-415.
1990: David R Engelke; A Krikos; M E Bruck; David Ginsburg
Purification of Thermus aquaticus DNA polymerase expressed in Escherichia coli.
Analytical biochemistry 1990;191(2):396-400.
1990: David R Engelke; J M Gottesfeld
Chromosomal footprinting of transcriptionally active and inactive oocyte-type 5S RNA genes of Xenopus laevis.
Nucleic acids research 1990;18(20):6031-7.
1990: C F Evans; David R Engelke; Dennis J Thiele
ACE1 transcription factor produced in Escherichia coli binds multiple regions within yeast metallothionein upstream activation sequences.
Molecular and cellular biology 1990;10(1):426-9.
1990: C F Evans; David R Engelke
Yeast extracts for transfer RNA gene transcription and processing.
Methods in enzymology 1990;181():439-50.
1989: Jon M Huibregtse; David R Engelke
Genomic footprinting of a yeast tRNA gene reveals stable complexes over the 5'-flanking region.
Molecular and cellular biology 1989;9(8):3244-52.
1989: J Y Lee; David R Engelke
Partial characterization of an RNA component that copurifies with Saccharomyces cerevisiae RNase P.
Molecular and cellular biology 1989;9(6):2536-43.
1989: Andrew Prongay; David R Engelke; Charles H Williams
Characterization of two active site mutations of thioredoxin reductase from Escherichia coli.
The Journal of biological chemistry 1989;264(5):2656-64.
1989: Jon M Huibregtse; David R Engelke; Dennis J Thiele
Copper-induced binding of cellular factors to yeast metallothionein upstream activation sequences.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(1):65-9.
1988: P McGarvey; R B Helling; J Y Lee; David R Engelke; M R el-Gewely
Initiation of rrn transcription in chloroplasts of Euglena gracilis bacillaris.
Current genetics 1988;14(5):493-500.
1988: N Leontis; A DaLio; M Strobel; David R Engelke
Effects of tRNA-intron structure on cleavage of precursor tRNAs by RNase P from Saccharomyces cerevisiae.
Nucleic acids research 1988;16(6):2537-52.
1988: David R Engelke
Interaction of tRNA transcription factors with satellite I DNA from Xenopus laevis.
Gene 1988;62(2):323-30.
1988: David R Engelke; P A Hoener; Francis S Collins
Direct sequencing of enzymatically amplified human genomic DNA.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(2):544-8.
1987: Jon M Huibregtse; C F Evans; David R Engelke
Comparison of tRNA gene transcription complexes formed in vitro and in nuclei.
Molecular and cellular biology 1987;7(9):3212-20.
1986: Jon M Huibregtse; David R Engelke
Direct identification of small sequence changes in chromosomal DNA.
Gene 1986;44(1):151-8.
1985: David R Engelke; P Gegenheimer; J Abelson
Nucleolytic processing of a tRNAArg-tRNAAsp dimeric precursor by a homologous component from Saccharomyces cerevisiae.
The Journal of biological chemistry 1985;260(2):1271-9.
1984: S A Fuhrman; David R Engelke; E P Geiduschek
HeLa cell RNA polymerase III transcription factors. Functional characterization of a fraction identified by its activity in a second template rescue assay.
The Journal of biological chemistry 1984;259(3):1934-43.
1984: K Kjellin-Straby; David R Engelke; J Abelson
Homologous in vitro transcription of linear DNA fragments containing the tRNAArg-tRNAAsp gene pair from Saccharomyces cerevisiae.
DNA (Mary Ann Liebert, Inc.) 1984;3(2):167-71.
1983: David R Engelke; B S Shastry; R G Roeder
Multiple forms of DNA-dependent RNA polymerases in Xenopus laevis. Rapid purification and structural and immunological properties.
The Journal of biological chemistry 1983;258(3):1921-31.
1983: E Büchner; David R Engelke
[Problem areas in nursing. 2].
Krankenpflege (Frankfurt am Main, Germany) 1983;37(2):50-2.
1983: E Büchner; David R Engelke
[Problem areas in nursing. 1].
Krankenpflege (Frankfurt am Main, Germany) 1983;37(1):30-2.
1981: S Sakonju; D D Brown; David R Engelke; S Y Ng; B S Shastry; R G Roeder
The binding of a transcription factor to deletion mutants of a 5S ribosomal RNA gene.
Cell 1981;23(3):665-9.
1980: David R Engelke; S Y Ng; B S Shastry; R G Roeder
Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes.
Cell 1980;19(3):717-28.