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Nobuyoshi Esaki

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Co-Publications
Name
66
Soda, K
55
Kurihara, Tatsuo
50
Yoshimura, Tohru
27
Mihara, Hisaaki
9
Galkin, Andrey
8
Kulakova, Liudmila
7
Hata, Yasuo
7
Hirotsu, Ken
7
Miyahara, Ikuko
6
Uo, Takuma
6
Fujii, Takahiro
5
Ichiyama, Susumu
5
Watanabe, Akira
5
Tsunasawa, Susumu
5
Muramatsu, Hisashi

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Publications

TOP 3
Tobe Ryuta; Mihara Hisaaki; Kurihara Tatsuo; Esaki Nobuyoshi
Identification of proteins interacting with selenocysteine lyase.
Omori Taketo; Mihara Hisaaki; Kurihara Tatsuo; Esaki Nobuyoshi
Occurrence of phosphatidyl-D-serine in the rat cerebrum.
Jitsumori Keiji; Omi Rie; Kurihara Tatsuo; Kurata Atsushi; Mihara Hisaaki; Miyahara Ikuko; Hirotsu Ken; Esaki Nobuyoshi
X-Ray crystallographic and mutational studies of fluoroacetate dehalogenase from Burkholderia sp. strain FA1.

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All Publications

2009: Tobe Ryuta; Mihara Hisaaki; Kurihara Tatsuo; Esaki Nobuyoshi
Identification of proteins interacting with selenocysteine lyase.
Bioscience, biotechnology, and biochemistry 2009;73(5):1230-2.
2009: Omori Taketo; Mihara Hisaaki; Kurihara Tatsuo; Esaki Nobuyoshi
Occurrence of phosphatidyl-D-serine in the rat cerebrum.
Biochemical and biophysical research communications 2009;382(2):415-8.
2009: Jitsumori Keiji; Omi Rie; Kurihara Tatsuo; Kurata Atsushi; Mihara Hisaaki; Miyahara Ikuko; Hirotsu Ken; Esaki Nobuyoshi
X-Ray crystallographic and mutational studies of fluoroacetate dehalogenase from Burkholderia sp. strain FA1.
Journal of bacteriology 2009;191(8):2630-7.
2009: Yamauchi Takae; Goto Masaru; Wu Hui-Yuan; Uo Takuma; Yoshimura Tohru; Mihara Hisaaki; Kurihara Tatsuo; Miyahara Ikuko; Hirotsu Ken; Esaki Nobuyoshi
Serine racemase with catalytically active lysinoalanyl residue.
Journal of biochemistry 2009;145(4):421-4.
2009: Kawamoto Jun; Kurihara Tatsuo; Yamamoto Kentaro; Nagayasu Makiko; Tani Yasushi; Mihara Hisaaki; Hosokawa Masashi; Baba Takeshi; Sato Satoshi B; Esaki Nobuyoshi
Eicosapentaenoic acid plays a beneficial role in membrane organization and cell division of a cold-adapted bacterium, Shewanella livingstonensis Ac10.
Journal of bacteriology 2009;191(2):632-40.
2008: Sato Sho; Kurihara Tatsuo; Kawamoto Jun; Hosokawa Masashi; Sato Satoshi B; Esaki Nobuyoshi
Cold adaptation of eicosapentaenoic acid-less mutant of Shewanella livingstonensis Ac10 involving uptake and remodeling of synthetic phospholipids containing various polyunsaturated fatty acids.
Extremophiles : life under extreme conditions 2008;12(6):753-61.
2008: Mihara Hisaaki; Hidese Ryota; Yamane Masahiro; Kurihara Tatsuo; Esaki Nobuyoshi
The iscS gene deficiency affects the expression of pyrimidine metabolism genes.
Biochemical and biophysical research communications 2008;372(3):407-11.
2008: Kurata Atsushi; Fujita Michiyo; Mowafy Amr M; Kamachi Harumi; Kurihara Tatsuo; Esaki Nobuyoshi
Production of (S)-2-chloropropionate by asymmetric reduction of 2-chloroacrylate with 2-haloacrylate reductase coupled with glucose dehydrogenase.
Journal of bioscience and bioengineering 2008;105(4):429-31.
2008: Kurihara Tatsuo; Esaki Nobuyoshi
Bacterial hydrolytic dehalogenases and related enzymes: occurrences, reaction mechanisms, and applications.
Chemical record (New York, N.Y.) 2008;8(2):67-74.
2007: Kawamoto Jun; Kurihara Tatsuo; Kitagawa Masanari; Kato Ikunoshin; Esaki Nobuyoshi
Proteomic studies of an Antarctic cold-adapted bacterium, Shewanella livingstonensis Ac10, for global identification of cold-inducible proteins.
Extremophiles : life under extreme conditions 2007;11(6):819-26.
2007: Miyake Ryoma; Kawamoto Jun; Wei Yun-Lin; Kitagawa Masanari; Kato Ikunoshin; Kurihara Tatsuo; Esaki Nobuyoshi
Construction of a low-temperature protein expression system using a cold-adapted bacterium, Shewanella sp. strain Ac10, as the host.
Applied and environmental microbiology 2007;73(15):4849-56.
2007: Omi Rie; Jitsumori Keiji; Yamauchi Takahiro; Ichiyama Susumu; Kurihara Tatsuo; Esaki Nobuyoshi; Kamiya Nobuo; Hirotsu Ken; Miyahara Ikuko
Expression, purification and preliminary X-ray characterization of DL-2-haloacid dehalogenase from Methylobacterium sp. CPA1.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 7):586-9.
2007: Yamanishi Yoshihiro; Mihara Hisaaki; Osaki Motoharu; Muramatsu Hisashi; Esaki Nobuyoshi; Sato Tetsuya; Hizukuri Yoshiyuki; Goto Susumu; Kanehisa Minoru
Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa.
The FEBS journal 2007;274(9):2262-73.
2007: Fujita Masashi; Mihara Hisaaki; Goto Susumu; Esaki Nobuyoshi; Kanehisa Minoru
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.
BMC bioinformatics 2007;8():225.
2006: Muramatsu Hisashi; Mihara Hisaaki; Yasuda Mari; Ueda Makoto; Kurihara Tatsuo; Esaki Nobuyoshi
Enzymatic synthesis of L-pipecolic acid by Delta1-piperideine-2-carboxylate reductase from Pseudomonas putida.
Bioscience, biotechnology, and biochemistry 2006;70(9):2296-8.
2006: Yow Geok-Yong; Uo Takuma; Yoshimura Tohru; Esaki Nobuyoshi
Physiological role of D-amino acid-N-acetyltransferase of Saccharomyces cerevisiae: detoxification of D-amino acids.
Archives of microbiology 2006;185(1):39-46.
2005: Goto Masaru; Muramatsu Hisashi; Mihara Hisaaki; Kurihara Tatsuo; Esaki Nobuyoshi; Omi Rie; Miyahara Ikuko; Hirotsu Ken
Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction.
The Journal of biological chemistry 2005;280(49):40875-84.
2005: Muramatsu Hisashi; Mihara Hisaaki; Goto Masaru; Miyahara Ikuko; Hirotsu Ken; Kurihara Tatsuo; Esaki Nobuyoshi
A new family of NAD(P)H-dependent oxidoreductases distinct from conventional Rossmann-fold proteins.
Journal of bioscience and bioengineering 2005;99(6):541-7.
2005: Kurata Atsushi; Kurihara Tatsuo; Kamachi Harumi; Esaki Nobuyoshi
2-Haloacrylate reductase, a novel enzyme of the medium chain dehydrogenase/reductase superfamily that catalyzes the reduction of a carbon-carbon double bond of unsaturated organohalogen compounds.
The Journal of biological chemistry 2005;280(21):20286-91.
2005: Yoshimune Kazuaki; Galkin Andrey; Kulakova Ljudmila; Yoshimura Tohru; Esaki Nobuyoshi
Cold-active DnaK of an Antarctic psychrotroph Shewanella sp. Ac10 supporting the growth of dnaK-null mutant of Escherichia coli at cold temperatures.
Extremophiles : life under extreme conditions 2005;9(2):145-50.
2005: Mihara Hisaaki; Muramatsu Hisashi; Kakutani Ryo; Yasuda Mari; Ueda Makoto; Kurihara Tatsuo; Esaki Nobuyoshi
N-methyl-L-amino acid dehydrogenase from Pseudomonas putida. A novel member of an unusual NAD(P)-dependent oxidoreductase superfamily.
The FEBS journal 2005;272(5):1117-23.
2005: Yoshimune Kazuaki; Galkin Andrey; Kulakova Ljudmila; Yoshimura Tohru; Esaki Nobuyoshi
DnaK from Vibrio proteolyticus: complementation of a dnaK-null mutant of Escherichia coli and the role of its ATPase domain.
Journal of bioscience and bioengineering 2005;99(2):136-42.
2005: Muramatsu Hisashi; Mihara Hisaaki; Kakutani Ryo; Yasuda Mari; Ueda Makoto; Kurihara Tatsuo; Esaki Nobuyoshi
The putative malate/lactate dehydrogenase from Pseudomonas putida is an NADPH-dependent delta1-piperideine-2-carboxylate/delta1-pyrroline-2-carboxylate reductase involved in the catabolism of D-lysine and D-proline.
The Journal of biological chemistry 2005;280(7):5329-35.
2005: Yoshimune Kazuaki; Esaki Nobuyoshi; Moriguchi Mitsuaki
Site-directed mutagenesis alters DnaK-dependent folding process.
Biochemical and biophysical research communications 2005;326(1):74-8.
2004: Yow Geok-Yong; Uo Takuma; Yoshimura Tohru; Esaki Nobuyoshi
D-amino acid N-acetyltransferase of Saccharomyces cerevisiae: a close homologue of histone acetyltransferase Hpa2p acting exclusively on free D-amino acids.
Archives of microbiology 2004;182(5):396-403.
2004: Ichiyama Susumu; Kurihara Tatsuo; Kogure Yoshifumi; Tsunasawa Susumu; Kawasaki Haruhiko; Esaki Nobuyoshi
Reactivity of asparagine residue at the active site of the D105N mutant of fluoroacetate dehalogenase from Moraxella sp. B.
Biochimica et biophysica acta 2004;1698(1):27-36.
2004: Kulakova Ljudmila; Galkin Andrey; Nakayama Toru; Nishino Tokuzo; Esaki Nobuyoshi
Cold-active esterase from Psychrobacter sp. Ant300: gene cloning, characterization, and the effects of Gly-->Pro substitution near the active site on its catalytic activity and stability.
Biochimica et biophysica acta 2004;1696(1):59-65.
2003: Suzuki Takeshi; Nakayama Toru; Choo Dong Wong; Hirano Yuriko; Kurihara Tatsuo; Nishino Tokuzo; Esaki Nobuyoshi
Cloning, heterologous expression, renaturation, and characterization of a cold-adapted esterase with unique primary structure from a psychrotroph Pseudomonas sp. strain B11-1.
Protein expression and purification 2003;30(2):171-8.
2003: Kurihara Tatsuo; Mihara Hisaaki; Kato Shin-ichiro; Yoshimura Tohru; Esaki Nobuyoshi
Assembly of iron-sulfur clusters mediated by cysteine desulfurases, IscS, CsdB and CSD, from Escherichia coli.
Biochimica et biophysica acta 2003;1647(1-2):303-9.
2002: Uo Takuma; Yoshimura Tohru; Nishiyama Tozo; Esaki Nobuyoshi
Gene cloning, purification, and characterization of 2,3-diaminopropionate ammonia-lyase from Escherichia coli.
Bioscience, biotechnology, and biochemistry 2002;66(12):2639-44.
2002: Mihara H; Esaki N
Bacterial cysteine desulfurases: their function and mechanisms.
Applied microbiology and biotechnology 2002;60(1-2):12-23.
2002: Suzuki Takeshi; Nakayama Toru; Kurihara Tatsuo; Nishino Tokuzo; Esaki Nobuyoshi
Primary structure and catalytic properties of a cold-active esterase from a psychrotroph, Acinetobacter sp. strain No. 6. isolated from Siberian soil.
Bioscience, biotechnology, and biochemistry 2002;66(8):1682-90.
2002: Yoshimune Kazuaki; Yoshimura Tohru; Nakayama Toru; Nishino Tokuzo; Esaki Nobuyoshi
Hsc62, Hsc56, and GrpE, the third Hsp70 chaperone system of Escherichia coli.
Biochemical and biophysical research communications 2002;293(5):1389-95.
2002: Mihara Hisaaki; Kato Shin-ichiro; Lacourciere Gerard M; Stadtman Thressa C; Kennedy Robert A J D; Kurihara Tatsuo; Tokumoto Umechiyo; Takahashi Yasuhiro; Esaki Nobuyoshi
The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine-containing formate dehydrogenase H.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(10):6679-83.
2002: Tokumoto Umechiyo; Nomura Shinobu; Minami Yoshiko; Mihara Hisaaki; Kato Shin-Ichiro; Kurihara Tatsuo; Esaki Nobuyoshi; Kanazawa Hiroshi; Matsubara Hiroshi; Takahashi Yasuhiro
Network of protein-protein interactions among iron-sulfur cluster assembly proteins in Escherichia coli.
Journal of biochemistry 2002;131(5):713-9.
2002: Mihara Hisaaki; Fujii Tomomi; Kato Shin-Ichiro; Kurihara Tatsuo; Hata Yasuo; Esaki Nobuyoshi
Structure of external aldimine of Escherichia coli CsdB, an IscS/NifS homolog: implications for its specificity toward selenocysteine.
Journal of biochemistry 2002;131(5):679-85.
2002: Ichiyama Susumu; Kurihara Tatsuo; Miyagi Masaru; Galkin Andrey; Tsunasawa Susumu; Kawasaki Haruhiko; Esaki Nobuyoshi
Catalysis-linked inactivation of fluoroacetate dehalogenase by ammonia: a novel approach to probe the active-site environment.
Journal of biochemistry 2002;131(5):671-7.
2002: Watanabe Akira; Yoshimura Tohru; Mikami Bunzo; Hayashi Hideyuki; Kagamiyama Hiroyuki; Esaki Nobuyoshi
Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine.
The Journal of biological chemistry 2002;277(21):19166-72.
2002: Kato Shin-ichiro; Mihara Hisaaki; Kurihara Tatsuo; Takahashi Yasuhiro; Tokumoto Umechiyo; Yoshimura Tohru; Esaki Nobuyoshi
Cys-328 of IscS and Cys-63 of IscU are the sites of disulfide bridge formation in a covalently bound IscS/IscU complex: implications for the mechanism of iron-sulfur cluster assembly.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(9):5948-52.
2002: Mihara Hisaaki; Esaki Nobuyoshi
Selenocysteine lyase from mouse liver.
Methods in enzymology 2002;347():198-203.
2001: Uo T; Yoshimura T; Tanaka N; Takegawa K; Esaki N
Functional characterization of alanine racemase from Schizosaccharomyces pombe: a eucaryotic counterpart to bacterial alanine racemase.
Journal of bacteriology 2001;183(7):2226-33.
2001: Suzuki T; Nakayama T; Kurihara T; Nishino T; Esaki N
Cold-active lipolytic activity of psychrotrophic Acinetobacter sp. strain no. 6.
Journal of bioscience and bioengineering 2001;92(2):144-8.
2001: Kashiwa M; Ike M; Mihara H; Esaki N; Fujita M
Removal of soluble selenium by a selenate-reducing bacterium Bacillus sp. SF-1.
BioFactors (Oxford, England) 2001;14(1-4):261-5.
2000: Gutierrez A; Yoshimura T; Fuchikami Y; Esaki N
Modulation of activity and substrate specificity by modifying the backbone length of the distant interdomain loop of D-amino acid aminotransferase.
European journal of biochemistry / FEBS 2000;267(24):7218-23.
2000: Ichiyama S; Kurihara T; Li Y F; Kogure Y; Tsunasawa S; Esaki N
Novel catalytic mechanism of nucleophilic substitution by asparagine residue involving cyanoalanine intermediate revealed by mass spectrometric monitoring of an enzyme reaction.
The Journal of biological chemistry 2000;275(52):40804-9.
2000: Kato S; Mihara H; Kurihara T; Yoshimura T; Esaki N
Gene cloning, purification, and characterization of two cyanobacterial NifS homologs driving iron-sulfur cluster formation.
Bioscience, biotechnology, and biochemistry 2000;64(11):2412-9.
2000: Kurihara T; Esaki N
[Biogenesis of iron-sulfur clusters]
Seikagaku. The Journal of Japanese Biochemical Society 2000;72(10):1266-9.
2000: Jhee K H; Yoshimura T; Miles E W; Takeda S; Miyahara I; Hirotsu K; Soda K; Kawata Y; Esaki N
Stereochemistry of the transamination reaction catalyzed by aminodeoxychorismate lyase from Escherichia coli: close relationship between fold type and stereochemistry.
Journal of biochemistry 2000;128(4):679-86.
2000: Lacourciere G M; Mihara H; Kurihara T; Esaki N; Stadtman T C
Escherichia coli NifS-like proteins provide selenium in the pathway for the biosynthesis of selenophosphate.
The Journal of biological chemistry 2000;275(31):23769-73.
2000: Nakai T; Mizutani H; Miyahara I; Hirotsu K; Takeda S; Jhee K H; Yoshimura T; Esaki N
Three-dimensional structure of 4-amino-4-deoxychorismate lyase from Escherichia coli.
Journal of biochemistry 2000;128(1):29-38.
2000: Mihara H; Kurihara T; Yoshimura T; Esaki N
Kinetic and mutational studies of three NifS homologs from Escherichia coli: mechanistic difference between L-cysteine desulfurase and L-selenocysteine lyase reactions.
Journal of biochemistry 2000;127(4):559-67.
2000: Mihara H; Kurihara T; Watanabe T; Yoshimura T; Esaki N
cDNA cloning, purification, and characterization of mouse liver selenocysteine lyase. Candidate for selenium delivery protein in selenoprotein synthesis.
The Journal of biological chemistry 2000;275(9):6195-200.
2000: Takita T; Shimizu N; Sukata T; Hashimoto S; Akita E; Yokota T; Esaki N; Soda K; Inouye K; Tonomura B
Lysyl-tRNA synthetase of Bacillus stearothermophilus molecular cloning and expression of the gene.
Bioscience, biotechnology, and biochemistry 2000;64(2):432-7.
2000: Fujii T; Maeda M; Mihara H; Kurihara T; Esaki N; Hata Y
Structure of a NifS homologue: X-ray structure analysis of CsdB, an Escherichia coli counterpart of mammalian selenocysteine lyase.
Biochemistry 2000;39(6):1263-73.
1999: Watanabe A; Yoshimura T; Mikami B; Esaki N
Tyrosine 265 of alanine racemase serves as a base abstracting alpha-hydrogen from L-alanine: the counterpart residue to lysine 39 specific to D-alanine.
Journal of biochemistry 1999;126(4):781-6.
1999: Galkin A; Kulakova L; Ashida H; Sawa Y; Esaki N
Cold-adapted alanine dehydrogenases from two antarctic bacterial strains: gene cloning, protein characterization, and comparison with mesophilic and thermophilic counterparts.
Applied and environmental microbiology 1999;65(9):4014-20.
1999: Nardi-Dei V; Kurihara T; Park C; Miyagi M; Tsunasawa S; Soda K; Esaki N
DL-2-Haloacid dehalogenase from Pseudomonas sp. 113 is a new class of dehalogenase catalyzing hydrolytic dehalogenation not involving enzyme-substrate ester intermediate.
The Journal of biological chemistry 1999;274(30):20977-81.
1999: Watanabe A; Kurokawa Y; Yoshimura T; Esaki N
Role of tyrosine 265 of alanine racemase from Bacillus stearothermophilus.
Journal of biochemistry 1999;125(6):987-90.
1999: Mihara H; Maeda M; Fujii T; Kurihara T; Hata Y; Esaki N
A nifS-like gene, csdB, encodes an Escherichia coli counterpart of mammalian selenocysteine lyase. Gene cloning, purification, characterization and preliminary x-ray crystallographic studies.
The Journal of biological chemistry 1999;274(21):14768-72.
1999: Watanabe A; Kurokawa Y; Yoshimura T; Kurihara T; Soda K; Esaki N;
Role of lysine 39 of alanine racemase from Bacillus stearothermophilus that binds pyridoxal 5'-phosphate. Chemical rescue studies of Lys39 --> Ala mutant.
The Journal of biological chemistry 1999;274(7):4189-94.
1999: Kulakova L; Galkin A; Kurihara T; Yoshimura T; Esaki N
Cold-active serine alkaline protease from the psychrotrophic bacterium Shewanella strain ac10: gene cloning and enzyme purification and characterization.
Applied and environmental microbiology 1999;65(2):611-7.
1998: Kurokawa Y; Watanabe A; Yoshimura T; Esaki N; Soda K
Transamination as a side-reaction catalyzed by alanine racemase of Bacillus stearothermophilus.
Journal of biochemistry 1998;124(6):1163-9.
1998: Liu J Q; Kurihara T; Ichiyama S; Miyagi M; Tsunasawa S; Kawasaki H; Soda K; Esaki N
Reaction mechanism of fluoroacetate dehalogenase from Moraxella sp. B.
The Journal of biological chemistry 1998;273(47):30897-902.
1998: Fuchikami Y; Yoshimura T; Gutierrez A; Soda K; Esaki N
Construction and properties of a fragmentary D-amino acid aminotransferase.
Journal of biochemistry 1998;124(5):905-10.
1998: Yoshimune K; Yoshimura T; Esaki N
Hsc62, a new DnaK homologue of Escherichia coli.
Biochemical and biophysical research communications 1998;250(1):115-8.
1998: Li Y F; Hata Y; Fujii T; Kurihara T; Esaki N
X-ray structure of a reaction intermediate of L-2-haloacid dehalogenase with L-2-chloropropionamide.
Journal of biochemistry 1998;124(1):20-2.
1998: Li Y F; Hata Y; Fujii T; Hisano T; Nishihara M; Kurihara T; Esaki N
Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism.
The Journal of biological chemistry 1998;273(24):15035-44.
1998: Uo T; Yoshimura T; Shimizu S; Esaki N
Occurrence of pyridoxal 5'-phosphate-dependent serine racemase in silkworm, Bombyx mori.
Biochemical and biophysical research communications 1998;246(1):31-4.
1998: Gorlatova N; Tchorzewski M; Kurihara T; Soda K; Esaki N
Purification, characterization, and mechanism of a flavin mononucleotide-dependent 2-nitropropane dioxygenase from Neurospora crassa.
Applied and environmental microbiology 1998;64(3):1029-33.
1998: Choo D W; Kurihara T; Suzuki T; Soda K; Esaki N
A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: gene cloning and enzyme purification and characterization.
Applied and environmental microbiology 1998;64(2):486-91.
1998: Lim Y H; Yoshimura T; Kurokawa Y; Esaki N; Soda K
Nonstereospecific transamination catalyzed by pyridoxal phosphate-dependent amino acid racemases of broad substrate specificity.
The Journal of biological chemistry 1998;273(7):4001-5.
1998: Gutierrez A; Yoshimura T; Fuchikami Y; Soda K; Esaki N
A mutant D-amino acid aminotransferase with broad substrate specificity: construction by replacement of the interdomain loop Pro119-Arg120-Pro121 by Gly-Gly-Gly.
Protein engineering 1998;11(1):53-8.
1998: Liu L; Yoshimura T; Endo K; Kishimoto K; Fuchikami Y; Manning J M; Esaki N; Soda K
Compensation for D-glutamate auxotrophy of Escherichia coli WM335 by D-amino acid aminotransferase gene and regulation of murI expression.
Bioscience, biotechnology, and biochemistry 1998;62(1):193-5.
1997: Kishimoto K; Yoshimura T; Soda K; Esaki N
Mutation of arginine 98, which serves as a substrate-recognition site of D-amino acid aminotransferase, can be partly compensated for by mutation of tyrosine 88 to an arginyl residue.
Journal of biochemistry 1997;122(6):1182-9.
1997: Galkin A; Kulakova L; Yoshimura T; Soda K; Esaki N
Synthesis of optically active amino acids from alpha-keto acids with Escherichia coli cells expressing heterologous genes.
Applied and environmental microbiology 1997;63(12):4651-6.
1997: Mihara H; Kurihara T; Yoshimura T; Soda K; Esaki N
Cysteine sulfinate desulfinase, a NIFS-like protein of Escherichia coli with selenocysteine lyase and cysteine desulfurase activities. Gene cloning, purification, and characterization of a novel pyridoxal enzyme.
The Journal of biological chemistry 1997;272(36):22417-24.
1997: Nardi-Dei V; Kurihara T; Park C; Esaki N; Soda K
Bacterial DL-2-haloacid dehalogenase from Pseudomonas sp. strain 113: gene cloning and structural comparison with D- and L-2-haloacid dehalogenases.
Journal of bacteriology 1997;179(13):4232-8.
1997: Liu L; Yoshimura T; Endo K; Esaki N; Soda K
Cloning and expression of the glutamate racemase gene of Bacillus pumilus.
Journal of biochemistry 1997;121(6):1155-61.
1997: Galkin A; Kulakova L; Ohshima T; Esaki N; Soda K
Construction of a new leucine dehydrogenase with preferred specificity for NADP+ by site-directed mutagenesis of the strictly NAD+-specific enzyme.
Protein engineering 1997;10(6):687-90.
1996: Hisano T; Hata Y; Fujii T; Liu J Q; Kurihara T; Esaki N; Soda K
Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An alpha/beta hydrolase structure that is different from the alpha/beta hydrolase fold.
The Journal of biological chemistry 1996;271(34):20322-30.
1996: Jhee K H; Yoshimura T; Esaki N; Soda K
Stereospecificity of thermostable ornithine 5-aminotransferase for the hydrogen transfer in the L- and D-ornithine transamination.
Biochemistry 1996;35(30):9792-6.
1996: Hisano T; Hata Y; Fujii T; Liu J Q; Kurihara T; Esaki N; Soda K
Crystallization and preliminary x-ray crystallographic studies of L-2-haloacid dehalogenase from Pseudomonas sp. YL.
Proteins 1996;24(4):520-2.
1996: Esaki N; Soda K
[Trace elements as activation factors of enzymes: characteristic enzymes and their activation mechanisms]
Nippon rinsho. Japanese journal of clinical medicine 1996;54(1):17-25.
1995: Galkin A; Kulakova L; Tishkov V; Esaki N; Soda K
Cloning of formate dehydrogenase gene from a methanol-utilizing bacterium Mycobacterium vaccae N10.
Applied microbiology and biotechnology 1995;44(3-4):479-83.
1995: Liu J Q; Kurihara T; Nardi-Dei V; Okamura T; Esaki N; Soda K
Overexpression and feasible purification of thermostable L-2-halo acid dehalogenase of Pseudomonas sp. YL.
Biodegradation 1995;6(3):223-7.
1995: Liu J Q; Kurihara T; Miyagi M; Esaki N; Soda K
Reaction mechanism of L-2-haloacid dehalogenase of Pseudomonas sp. YL. Identification of Asp10 as the active site nucleophile by 18O incorporation experiments.
The Journal of biological chemistry 1995;270(31):18309-12.
1995: Jhee K H; Yoshimura T; Esaki N; Yonaha K; Soda K
Thermostable ornithine aminotransferase from Bacillus sp. YM-2: purification and characterization.
Journal of biochemistry 1995;118(1):101-8.
1995: Kurihara T; Liu J Q; Nardi-Dei V; Koshikawa H; Esaki N; Soda K
Comprehensive site-directed mutagenesis of L-2-halo acid dehalogenase to probe catalytic amino acid residues.
Journal of biochemistry 1995;117(6):1317-22.
1995: Tamura T; Wada M; Esaki N; Soda K
Synthesis of fluoroacetate from fluoride, glycerol, and beta-hydroxypyruvate by Streptomyces cattleya.
Journal of bacteriology 1995;177(9):2265-9.
1995: Kishimoto K; Yoshimura T; Esaki N; Sugio S; Manning J M; Soda K
Role of leucine 201 of thermostable D-amino acid aminotransferase from a thermophile, Bacillus sp. YM-1.
Journal of biochemistry 1995;117(4):691-6.
1995: Ashiuchi M; Yoshimura T; Kitamura T; Kawata Y; Nagai J; Gorlatov S; Esaki N; Soda K
In vivo effect of GroESL on the folding of glutamate racemase of Escherichia coli.
Journal of biochemistry 1995;117(3):495-8.
1994: Tchorzewski M; Kurihara T; Esaki N; Soda K
Unique primary structure of 2-nitropropane dioxygenase from Hansenula mrakii.
European journal of biochemistry / FEBS 1994;226(3):841-6.
1994: Kataoka K; Tanizawa K; Fukui T; Ueno H; Yoshimura T; Esaki N; Soda K
Identification of active site lysyl residues of phenylalanine dehydrogenase by chemical modification with methyl acetyl phosphate combined with site-directed mutagenesis.
Journal of biochemistry 1994;116(6):1370-6.
1994: Choi S Y; Esaki N; Ashiuchi M; Yoshimura T; Soda K
Bacterial glutamate racemase has high sequence similarity with myoglobins and forms an equimolar inactive complex with hemin.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(21):10144-7.
1994: Kataoka K; Takada H; Tanizawa K; Yoshimura T; Esaki N; Ohshima T; Soda K
Construction and characterization of chimeric enzyme consisting of an amino-terminal domain of phenylalanine dehydrogenase and a carboxy-terminal domain of leucine dehydrogenase.
Journal of biochemistry 1994;116(4):931-6.
1994: Nardi-Dei V; Kurihara T; Okamura T; Liu J Q; Koshikawa H; Ozaki H; Terashima Y; Esaki N; Soda K
Comparative studies of genes encoding thermostable L-2-halo acid dehalogenase from Pseudomonas sp. strain YL, other dehalogenases, and two related hypothetical proteins from Escherichia coli.
Applied and environmental microbiology 1994;60(9):3375-80.
1994: Liu J Q; Kurihara T; Esaki N; Soda K
Reconsideration of the essential role of a histidine residue of L-2-halo acid dehalogenase.
Journal of biochemistry 1994;116(2):248-9.
1994: Liu J Q; Kurihara T; Hasan A K; Nardi-Dei V; Koshikawa H; Esaki N; Soda K
Purification and characterization of thermostable and nonthermostable 2-haloacid dehalogenases with different stereospecificities from Pseudomonas sp. strain YL.
Applied and environmental microbiology 1994;60(7):2389-93.
1994: Kim D W; Yoshimura T; Esaki N; Satoh E; Soda K
Studies of the active-site lysyl residue of thermostable aspartate aminotransferase: combination of site-directed mutagenesis and chemical modification.
Journal of biochemistry 1994;115(1):93-7.
1994: Matsushima Y; Kim D W; Yoshimura T; Kuramitsu S; Kagamiyama H; Esaki N; Soda K
Replacement of active-site lysine-239 of thermostable aspartate aminotransferase by S-(2-aminoethyl)cysteine: properties of the mutant enzyme.
Journal of biochemistry 1994;115(1):108-12.
1993: Yoshimura T; Ashiuchi M; Esaki N; Kobatake C; Choi S Y; Soda K
Expression of glr (murI, dga) gene encoding glutamate racemase in Escherichia coli.
The Journal of biological chemistry 1993;268(32):24242-6.
1993: Kataoka K; Takada H; Yoshimura T; Furuyoshi S; Esaki N; Ohshima T; Soda K
Site-directed mutagenesis of a hexapeptide segment involved in substrate recognition of phenylalanine dehydrogenase from Thermoactinomyces intermedius.
Journal of biochemistry 1993;114(1):69-75.
1993: Lim Y H; Yokoigawa K; Esaki N; Soda K
A new amino acid racemase with threonine alpha-epimerase activity from Pseudomonas putida: purification and characterization.
Journal of bacteriology 1993;175(13):4213-7.
1993: Koide T; Itoh H; Otaka A; Yasui H; Kuroda M; Esaki N; Soda K; Fujii N
Synthetic study on selenocystine-containing peptides.
Chemical & pharmaceutical bulletin 1993;41(3):502-6.
1993: Tamura T; Oikawa T; Ohtaka A; Fujii N; Esaki N; Soda K
Synthesis and characterization of the selenium analog of glutathione disulfide.
Analytical biochemistry 1993;208(1):151-4.
1993: Yokoigawa K; Kawai H; Endo K; Lim Y H; Esaki N; Soda K
Thermolabile alanine racemase from a psychotroph, Pseudomonas fluorescens: purification and properties.
Bioscience, biotechnology, and biochemistry 1993;57(1):93-7.
1992: Yamauchi T; Choi S Y; Okada H; Yohda M; Kumagai H; Esaki N; Soda K
Properties of aspartate racemase, a pyridoxal 5'-phosphate-independent amino acid racemase.
The Journal of biological chemistry 1992;267(26):18361-4.
1992: Choi S Y; Esaki N; Yoshimura T; Soda K
Reaction mechanism of glutamate racemase, a pyridoxal phosphate-independent amino acid racemase.
Journal of biochemistry 1992;112(1):139-42.
1992: Esaki N; Ohshima T; Soda K
Structure and function of thermostable amino acid dehydrogenases.
Journal of nutritional science and vitaminology 1992;Spec No():465-8.
1991: Toyama H; Esaki N; Yoshimura T; Tanizawa K; Soda K
Thermostable alanine racemase of Bacillus stearothermophilus: subunit dissociation and unfolding.
Journal of biochemistry 1991;110(2):279-83.
1991: Toyama H; Tanizawa K; Yoshimura T; Asano S; Lim Y H; Esaki N; Soda K
Thermostable alanine racemase of Bacillus stearothermophilus. Construction and expression of active fragmentary enzyme.
The Journal of biological chemistry 1991;266(21):13634-9.
1991: Nishimura K; Tanizawa K; Yoshimura T; Esaki N; Futaki S; Manning J M; Soda K
Effect of substitution of a lysyl residue that binds pyridoxal phosphate in thermostable D-amino acid aminotransferase by arginine and alanine.
Biochemistry 1991;30(16):4072-7.
1991: Kamitani H; Esaki N; Tanaka H; Soda K
Degradation of L-djenkolate catalyzed by S-alkylcysteine alpha,beta-lyase from Pseudomonas putida.
Journal of biochemistry 1991;109(4):645-9.
1991: Oikawa T; Esaki N; Tanaka H; Soda K
Metalloselenonein, the selenium analogue of metallothionein: synthesis and characterization of its complex with copper ions.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(8):3057-9.
1991: Takada H; Yoshimura T; Ohshima T; Esaki N; Soda K
Thermostable phenylalanine dehydrogenase of Thermoactinomyces intermedius: cloning, expression, and sequencing of its gene.
Journal of biochemistry 1991;109(3):371-6.
1991: Ikeda H; Esaki N; Nakai S; Hashimoto K; Uesato S; Soda K; Fujita T
Acyclic monoterpene primary alcohol:NADP+ oxidoreductase of Rauwolfia serpentina cells: the key enzyme in biosynthesis of monoterpene alcohols.
Journal of biochemistry 1991;109(2):341-7.
1991: Choi S Y; Esaki N; Yoshimura T; Soda K
Overproduction of glutamate racemase of Pediococcus pentosaceus in Escherichia coli clone cells and its purification.
Protein expression and purification 1991;2(1):90-3.
1990: Yoshimura T; Matsushima Y; Tanizawa K; Sung M H; Yamauchi T; Wakayama M; Esaki N; Soda K
Substitution of S-(beta-aminoethyl)-cysteine for active-site lysine of thermostable aspartate aminotransferase.
Journal of biochemistry 1990;108(5):699-700.
1990: Kamitani H; Esaki N; Tanaka H; Imahara H; Soda K
Purification and characterization of S-alkylcysteine alpha,beta-lyase from Pseudomonas putida.
Journal of nutritional science and vitaminology 1990;36(4):339-47.
1990: Kamitani H; Esaki N; Tanaka H; Soda K
Thermostable S-alkylcysteine alpha, beta-lyase from a thermophile: purification and properties.
Agricultural and biological chemistry 1990;54(8):2069-76.
1989: Esaki N; Shimoi H; Nakajima N; Ohshima T; Tanaka H; Soda K
Enzymatic in situ determination of stereospecificity of NAD-dependent dehydrogenases.
The Journal of biological chemistry 1989;264(17):9750-2.
1989: Sugimoto M; Esaki N; Tanaka H; Soda K
A simple and efficient method for the oligonucleotide-directed mutagenesis using plasmid DNA template and phosphorothioate-modified nucleotide.
Analytical biochemistry 1989;179(2):309-11.
1989: Oka M; Yang Y S; Nagata S; Esaki N; Tanaka H; Soda K
Overproduction of thermostable leucine dehydrogenase of Bacillus stearothermophilus and its one-step purification from recombinant cells of Escherichia coli.
Biotechnology and applied biochemistry 1989;11(3):307-11.
1988: Nagata S; Tanizawa K; Esaki N; Sakamoto Y; Ohshima T; Tanaka H; Soda K
Gene cloning and sequence determination of leucine dehydrogenase from Bacillus stearothermophilus and structural comparison with other NAD(P)+-dependent dehydrogenases.
Biochemistry 1988;27(25):9056-62.
1988: Sugimoto M; Oikawa T; Esaki N; Tanaka H; Soda K
Chemical synthesis and expression of copper metallothionein gene of Neurospora crassa.
Journal of biochemistry 1988;104(6):924-6.
1988: Nakayama T; Esaki N; Tanaka H; Soda K
Specific labeling of the essential cysteine residue of L-methionine gamma-lyase with a cofactor analogue, N-(bromoacetyl)pyridoxamine phosphate.
Biochemistry 1988;27(5):1587-91.
1988: Esaki N; Seraneeprakarn V; Tanaka H; Soda K
Purification and characterization of Clostridium sticklandii D-selenocystine alpha, beta-lyase.
Journal of bacteriology 1988;170(2):751-6.

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