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Catherine Etchebest

Research Profile

Concepts & Ideas

Genes & Molecular Sequences

Amino Acid Sequences

Chemicals & Drugs

Activities & Behaviors

Occupations

Computational Biology

Procedures

Anatomy

Lipid Bilayers

Co-author Network

Publications

TOP 3
Lydie Vamparys; Stefano Vanni; Romain Gautier; D Peter Tieleman; Bruno Antonny; W F Drew Bennett; Catherine Etchebest; Patrick F J Fuchs
Conical lipids in flat bilayers induce packing defects similar to that induced by positive curvature.
Stefano Vanni; Guillaume Drin; Catherine Etchebest; Patrick F J Fuchs; Romain Gautier; Lydie Vamparys; Bruno Antonny
Amphipathic lipid packing sensor motifs: probing bilayer defects with hydrophobic residues.
Alexandre G de Brevern; Catherine Etchebest; Aurélie Bornot; Pierrick Craveur; Jean-Christophe Gelly
PredyFlexy: flexibility and local structure prediction from sequence.

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All Publications

2013: Lydie Vamparys; Stefano Vanni; Romain Gautier; D Peter Tieleman; Bruno Antonny; W F Drew Bennett; Catherine Etchebest; Patrick F J Fuchs
Conical lipids in flat bilayers induce packing defects similar to that induced by positive curvature.
Biophysical journal 2013;104(3):585-93.
2013: Stefano Vanni; Guillaume Drin; Catherine Etchebest; Patrick F J Fuchs; Romain Gautier; Lydie Vamparys; Bruno Antonny
Amphipathic lipid packing sensor motifs: probing bilayer defects with hydrophobic residues.
Biophysical journal 2013;104(3):575-84.
2012: Alexandre G de Brevern; Catherine Etchebest; Aurélie Bornot; Pierrick Craveur; Jean-Christophe Gelly
PredyFlexy: flexibility and local structure prediction from sequence.
Nucleic acids research 2012;40(Web Server issue):W317-22.
2012: Marc Guéroult; Olivier Boittin; Catherine Etchebest; Oliver Mauffret; Brigitte Hartmann
Mg2+ in the major groove modulates B-DNA structure and dynamics.
PloS one 2012;7(7):e41704.
2011: Paula González-Rubio; Romain Gautier; Catherine Etchebest; Patrick F J Fuchs
Amphipathic-Lipid-Packing-Sensor interactions with lipids assessed by atomistic molecular dynamics.
Biochimica et biophysica acta 2011;1808(9):2119-27.
2011: Viet-Laï Pham; Cécile Gouzy-Darmon; Julien Pernier; Chantal Hanquez; Vivian Hook; Margery C Beinfeld; Pierre Nicolas; Catherine Etchebest; Thierry Foulon; Sandrine Cadel
Mutation in the substrate-binding site of aminopeptidase B confers new enzymatic properties.
Biochimie 2011;93(4):730-41.
2011: Aurélie Bornot; Catherine Etchebest; Alexandre G de Brevern
Predicting protein flexibility through the prediction of local structures.
Proteins 2011;79(3):839-52.
2011: Christel Goudot; Frédéric Devaux; Catherine Etchebest; Gaëlle Lelandais
The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins.
PloS one 2011;6(6):e20924.
2010: Jean Pylouster; Aurélie Bornot; Catherine Etchebest; Alexandre G de Brevern
Influence of assignment on the prediction of transmembrane helices in protein structures.
Amino acids 2010;39(5):1241-54.
2010: Gilles Phan; Houssain Benabdelhak; Marie-Bernard Lascombe; Philippe Benas; Stéphane Réty; Martin Picard; Arnaud Ducruix; Catherine Etchebest; Isabelle Broutin
Structural and dynamical insights into the opening mechanism of P. aeruginosa OprM channel.
Structure (London, England : 1993) 2010;18(4):507-17.
2010: Catherine Etchebest; Gaelle Debret
Critical review of general guidelines for membrane proteins model building and analysis.
Methods in molecular biology (Clifton, N.J.) 2010;654():363-85.
2009: Aurélie Bornot; Catherine Etchebest; Alexandre G de Brevern
A new prediction strategy for long local protein structures using an original description.
Proteins 2009;76(3):570-87.
2009: Alexandre G de Brevern; Ludovic Autin; Yves Colin; Olivier Bertrand; Catherine Etchebest
In silico studies on DARC.
Infectious disorders drug targets 2009;9(3):289-303.
2009: Pavle Goldstein; Jurica Zucko; Dusica Vujaklija; Anita Krisko; Daslav Hranueli; Paul F Long; Catherine Etchebest; Bojan Basrak; John Cullum
Clustering of protein domains for functional and evolutionary studies.
BMC bioinformatics 2009;10():335.
2008: Juliette Martin; Leslie Regad; Catherine Etchebest; Anne-Claude Camproux
Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes.
Proteins 2008;73(3):672-89.
2008: Gaëlle Debret; Hélène Valadié; Andreas Maximilian Stadler; Catherine Etchebest
New insights of membrane environment effects on MscL channel mechanics from theoretical approaches.
Proteins 2008;71(3):1183-96.
2008: Gaëlle Lelandais; Véronique Tanty; Colette Geneix; Catherine Etchebest; Claude Jacq; Frédéric Devaux
Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.
Genome biology 2008;9(11):R164.
2007: Suat Ozdirekcan; Catherine Etchebest; J Antoinette Killian; Patrick F J Fuchs
On the orientation of a designed transmembrane peptide: toward the right tilt angle?
Journal of the American Chemical Society 2007;129(49):15174-81.
2007: Catherine Etchebest; Cristina Benros; Aurélie Bornot; Anne-Claude Camproux; Alexandre G de Brevern
A reduced amino acid alphabet for understanding and designing protein adaptation to mutation.
European biophysics journal : EBJ 2007;36(8):1059-69.
2007: Jean-Jacques Lacapère; Eva Pebay-Peyroula; Jean-Michel Neumann; Catherine Etchebest
Determining membrane protein structures: still a challenge!
Trends in biochemical sciences 2007;32(6):259-70.
2007: Anita Krisko; Catherine Etchebest
Theoretical model of human apolipoprotein B100 tertiary structure.
Proteins 2007;66(2):342-58.
2007: Viet-Laï Pham; Marie-Sandrine Cadel; Cécile Gouzy-Darmon; Chantal Hanquez; Margery C Beinfeld; Pierre Nicolas; Catherine Etchebest; Thierry Foulon
Aminopeptidase B, a glucagon-processing enzyme: site directed mutagenesis of the Zn2+-binding motif and molecular modelling.
BMC biochemistry 2007;8():21.
2007: Alexandre G de Brevern; Catherine Etchebest; Cristina Benros; Serge Hazout
"Pinning strategy": a novel approach for predicting the backbone structure in terms of protein blocks from sequence.
Journal of biosciences 2007;32(1):51-70.
2006: Jean-Christophe Gelly; Catherine Etchebest; Serge Hazout; Alexandre G de Brevern
Protein Peeling 2: a web server to convert protein structures into series of protein units.
Nucleic acids research 2006;34(Web Server issue):W75-8.
2006: Cristina Benros; Alexandre G de Brevern; Catherine Etchebest; Serge Hazout
Assessing a novel approach for predicting local 3D protein structures from sequence.
Proteins 2006;62(4):865-80.
2005: Alexandre G de Brevern; H Wong; Christophe Tournamille; Yves Colin; Caroline Le Van Kim; Catherine Etchebest
A structural model of a seven-transmembrane helix receptor: the Duffy antigen/receptor for chemokine (DARC).
Biochimica et biophysica acta 2005;1724(3):288-306.
2005: Catherine Etchebest; Cristina Benros; Serge Hazout; Alexandre G de Brevern
A structural alphabet for local protein structures: improved prediction methods.
Proteins 2005;59(4):810-27.
2004: Alexandre G de Brevern; Cristina Benros; Romain Gautier; Hélène Valadié; Serge Hazout; Catherine Etchebest
Local backbone structure prediction of proteins.
In silico biology 2004;4(3):381-6.
2003: Hélène Valadié; J J Lacapcre; Y-H Sanejouand; Catherine Etchebest
Dynamical properties of the MscL of Escherichia coli: a normal mode analysis.
Journal of molecular biology 2003;332(3):657-74.
2002: Alexandre G de Brevern; Hélène Valadié; Serge Hazout; Catherine Etchebest
Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.
Protein science : a publication of the Protein Society 2002;11(12):2871-86.
2002: Fatma Briki; Jean Doucet; Catherine Etchebest
A procedure for refining a coiled coil protein structure using x-ray fiber diffraction and modeling.
Biophysical journal 2002;83(4):1774-83.
2002: Julien S Fellah; Pierre Tuffèry; Catherine Etchebest; Françoise Guillet; Christian Bleux; Jacques Charlemagne
Cloning and modeling of CD8 beta in the amphibian ambystoma Mexicanum. Evolutionary conserved structures for interactions with major histocompatibility complex (MHC) class I molecules.
Gene 2002;288(1-2):95-102.
2000: Alexandre G de Brevern; Catherine Etchebest; Serge Hazout
Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks.
Proteins 2000;41(3):271-87.
1997: Pierre Tufféry; Catherine Etchebest; Serge Hazout
Prediction of protein side chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space.
Protein engineering 1997;10(4):361-72.