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Hong Fang

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Oligonucleotide Array Sequence Analysis

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TOP 3
Ying-Guo Ding; Hong Fang
Edematous erythema, subcutaneous plaques, and severe pain in the lower extremities in an immunocompromised patient.
Xiaoyan Liu; Jianjun Qiao; Xianning Zhang; Hong Fang
Identification of a Novel Nonsense Mutation in POLH in a Chinese Pedigree with Xeroderma Pigmentosum, Variant Type.
Wen Zou; Hung-Chia Chen; Hong Fang; Steven L Foley; Kelley B Hise; Wei-Jiun Lin; Joe Meehan; Rajesh Nayak; Hailin Tang; Joshua Xu; James J Chen
Meta-analysis of pulsed-field gel electrophoresis fingerprints based on a constructed Salmonella database.

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All Publications

2013: Ying-Guo Ding; Hong Fang
Edematous erythema, subcutaneous plaques, and severe pain in the lower extremities in an immunocompromised patient.
JAMA : the journal of the American Medical Association 2013;309(15):1632-3.
2013: Xiaoyan Liu; Jianjun Qiao; Xianning Zhang; Hong Fang
Identification of a Novel Nonsense Mutation in POLH in a Chinese Pedigree with Xeroderma Pigmentosum, Variant Type.
International journal of medical sciences 2013;10(6):766-70.
2013: Wen Zou; Hung-Chia Chen; Hong Fang; Steven L Foley; Kelley B Hise; Wei-Jiun Lin; Joe Meehan; Rajesh Nayak; Hailin Tang; Joshua Xu; James J Chen
Meta-analysis of pulsed-field gel electrophoresis fingerprints based on a constructed Salmonella database.
PloS one 2013;8(3):e59224.
2013: Xiaoyan Liu; Dingxian Zhu; Hong Fang; Yu Zhang
[Construction of a lentiviral RNA interference system targeting heparanase based on miR30 and its silencing effect].
Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences 2013;42(1):67-74.
2012: Huixiao Hong; Carrie L Moland; Roger Perkins; Daniel Sheehan; Jie Shen; William S Branham; Stacy L Dial; Hong Fang; Weida Tong
Rat α-Fetoprotein binding affinities of a large set of structurally diverse chemicals elucidated the relationships between structures and binding affinities.
Chemical research in toxicology 2012;25(11):2553-66.
2012: Hong Fang; Jian-yue Feng; Jian-ming Gu; Xiu-rong Hu; Guan-xi Chen; Gu-ping Tang
[Preparation and characterization of Forms A and B of benazepril hydrochloride].
Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences 2012;41(6):639-46.
2012: Yunya Cai; Jianjun Qiao; Hong Fang
Metachronous multiple primary malignant neoplasms in a patient with dermatomyositis.
Indian journal of dermatology, venereology and leprology 2012;78(5):665.
2012: Zhen-Fang Du; Hong Fang; Hai-Ping Ke; Wen-Ting Liu; Chen-Ming Xu; Chun-Yue Chen; Xiao-Ling Chen; Yan Zhao; Xian-Ning Zhang
Two novel de novo mutations of KRT6A and KRT16 genes in two Chinese pachyonychia congenita pedigrees with fissured tongue or diffuse plantar keratoderma.
European journal of dermatology : EJD 2012;22(4):476-80.
2012: Jianjun Qiao; Hong Fang; Hongtian Yao
Amyloidosis cutis dyschromica.
Orphanet journal of rare diseases 2012;7():95.
2012: Jianjun Qiao; Dolores López-Terrada; Kayuri U Patel; Hong Fang
Atrophic dermatofibrosarcoma protuberans: report of a case demonstrated by detecting COL1A1-PDGFB rearrangement.
Diagnostic pathology 2012;7():166.
2012: Huixiao Hong; Nadereh Jafari; Wendell D Jones; Christophe G Lambert; Simon M Lin; Jie Liu; Kelci Miclaus; Baitang Ning; Kyunghee Park; Roger Perkins; Wendy Czika; Hong Fang; Weigong Ge; Federico Goodsaid; Bridgett Green; Tao Han; Zhenqiang Su; Weida Tong; Silvia C Vega; Russell D Wolfinger; Lei Xu; Li Zhang; Leming Shi
Technical reproducibility of genotyping SNP arrays used in genome-wide association studies.
PloS one 2012;7(9):e44483.
2012: Xiaoyan Liu; Yan Wang; Hongchao Chen; Deren Fang; Hong Fang; Xiaoling Jiang; Dingxian Zhu
An artificial miRNA against HPSE suppresses melanoma invasion properties, correlating with a down-regulation of chemokines and MAPK phosphorylation.
PloS one 2012;7(6):e38659.
2012: Li Shao; Leming Shi; Leihong Wu; Haoshu Xiong; Ningtao Cheng; Yiyu Cheng; Don Ding; Xiaohui Fan; Hong Fang; Weida Tong
Shifting from population-wide to personalized cancer prognosis with microarrays.
PloS one 2012;7(1):e29534.
2011: Dingxian Zhu; Bing Xu; Hong Fang; Xiaoyan Liu; Jianjun Qiao; Zixiang Si
Giant warts in a Chinese with epidermodysplasia verruciformis.
Indian journal of dermatology, venereology and leprology 2011;77(6):730.
2011: Xiao-Yan Liu; Hong Fang; Lei Wang
Multiple painful erythematous nodules on extremities--a clinicopathological challenge.
International journal of dermatology 2011;50(11):1402-5.
2011: Jianjun Qiao; Guangan Zhou; Dingxian Zhu; Yingguo Ding; Hong Fang
Multiple paraneoplastic syndromes: myasthenia gravis, vitiligo, alopecia areata, and oral lichen planus associated with thymoma.
Journal of the neurological sciences 2011;308(1-2):177-9.
2011: Zhen-Fang Du; Hong Fang; Wen-Ting Liu; Jia-Jun Lu; Lian-Gen Mao; Yi-Fan Wang; Wei Wei; Chen-Ming Xu; Chun-Yue Chen; Xiao-Ling Chen; Xian-Ning Zhang
A novel mutation within the 2B rod domain of keratin 9 in a Chinese pedigree with epidermolytic palmoplantar keratoderma combined with knuckle pads and camptodactyly.
European journal of dermatology : EJD 2011;21(5):675-9.
2011: Minjun Chen; Hong Fang; Zhichao Liu; Qiang Shi; Vikrant Vijay; Weida Tong
FDA-approved drug labeling for the study of drug-induced liver injury.
Drug discovery today 2011;16(15-16):697-703.
2011: Zhichao Liu; Don Ding; Hong Fang; Reagan Kelly; Weida Tong
Comparative analysis of predictive models for nongenotoxic hepatocarcinogenicity using both toxicogenomics and quantitative structure-activity relationships.
Chemical research in toxicology 2011;24(7):1062-70.
2011: Wen Zou; Sufian F Al-Khaldi; William S Branham; Tao Han; James C Fuscoe; Jing Han; Steven L Foley; Joshua Xu; Hong Fang; Carl E Cerniglia; Rajesh Nayak
Microarray analysis of virulence gene profiles in Salmonella serovars from food/food animal environment.
Journal of infection in developing countries 2011;5(2):94-105.
2011: Dhivya Arasappan; Hong Fang; Padmaja Mummaneni; Weida Tong; Shashi Amur
Meta-analysis of microarray data using a pathway-based approach identifies a 37-gene expression signature for systemic lupus erythematosus in human peripheral blood mononuclear cells.
BMC medicine 2011;9():65.
2011: Xiaohui Fan; Li Shao; Hong Fang; Weida Tong; Yiyu Cheng
Cross-platform comparison of microarray-based multiple-class prediction.
PloS one 2011;6(1):e16067.
2011: Yi Na Wang; Hong Chao Chen; Bo Wang; Hong Fang
Oral and esophageal lichen planus following radiotherapy of nasopharyngeal carcinoma.
Acta dermato-venereologica 2011;91(1):94-5.
2010: Jianjun Qiao; Hong Fang
Heterochromia of the scalp hair.
CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne 2010;182(18):E862.
2010: Jianjun Qiao; Ruoyu Li; Yingguo Ding; Hong Fang
Photodynamic therapy in the treatment of superficial mycoses: an evidence-based evaluation.
Mycopathologia 2010;170(5):339-43.
2010: Yi-Na Wang; Hong Fang; Hai-Ming Wang; Hong-Chao Chen
[Effect of chronic exposure to ultraviolet on skin barrier function].
Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences 2010;39(5):517-22.
2010: Joshua Xu; Reagan Kelly; Hong Fang; Weida Tong
ArrayTrack: a free FDA bioinformatics tool to support emerging biomedical research--an update.
Human genomics 2010;4(6):428-34.
2010: J Huang; W Shi; J Zhang; J W Chou; Richard S Paules; K Gerrish; J Li; J Luo; Russell D Wolfinger; W Bao; T-M Chu; Yuri Nikolsky; Tatiana Nikolskaya; D Dosymbekov; M O Tsyganova; Leming Shi; X Fan; J C Corton; M Chen; Y Cheng; Weida Tong; Hong Fang; P R Bushel
Genomic indicators in the blood predict drug-induced liver injury.
The pharmacogenomics journal 2010;10(4):267-77.
2010: Jianping Huang; Hong Fang; Xiaohui Fan
Decision forest for classification of gene expression data.
Computers in biology and medicine 2010;40(8):698-704.
2010: Huixiao Hong; Leming Shi; Z Su; W Ge; W D Jones; Wendy Czika; K Miclaus; C G Lambert; S C Vega; J Zhang; Baitang Ning; J Liu; B Green; L Xu; Hong Fang; Roger Perkins; S M Lin; N Jafari; K Park; T Ahn; M Chierici; C Furlanello; L Zhang; Russell D Wolfinger; Federico M Goodsaid; Weida Tong
Assessing sources of inconsistencies in genotypes and their effects on genome-wide association studies with HapMap samples.
The pharmacogenomics journal 2010;10(4):364-74.
2010: Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming Shi; Roger Perkins; Hong Fang; Donna Mendrick; Weida Tong
Evaluating variations of genotype calling: a potential source of spurious associations in genome-wide association studies.
Journal of genetics 2010;89(1):55-64.
2010: Don Ding; Lei Xu; Hong Fang; Huixiao Hong; Roger Perkins; Steve Harris; Edward D Bearden; Leming Shi; Weida Tong
The EDKB: an established knowledge base for endocrine disrupting chemicals.
BMC bioinformatics 2010;11 Suppl 6():S5.
2010: Hong Fang; Joshua Xu; Don Ding; Scott Jackson; Isha R Patel; Jonathan G Frye; Wen Zou; Rajesh Nayak; Steven Foley; James Chen; Zhenqiang Su; Yanbin Ye; Steve Turner; Steve Harris; Guangxu Zhou; Carl Cerniglia; Weida Tong
An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays.
BMC bioinformatics 2010;11 Suppl 6():S4.
2009: Huixiao Hong; Qilong Hong; Roger Perkins; Leming Shi; Hong Fang; Zhenqiang Su; Yvonne Dragan; James C Fuscoe; Weida Tong
The accurate prediction of protein family from amino acid sequence by measuring features of sequence fragments.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(12):1671-88.
2009: Xiaohui Fan; Hong Fang; Huixiao Hong; Roger Perkins; Leming Shi; Weida Tong
Correlation analysis of external RNA controls reveals its utility for assessment of microarray assay.
Analytical biochemistry 2009;385(2):203-7.
2008: Leming Shi; Roger G Perkins; Hong Fang; Weida Tong
Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential.
Current opinion in biotechnology 2008;19(1):10-8.
2008: Zhenqiang Su; Huixiao Hong; Hong Fang; Leming Shi; Roger Perkins; Weida Tong
Very Important Pool (VIP) genes--an application for microarray-based molecular signatures.
BMC bioinformatics 2008;9 Suppl 9():S9.
2008: Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming Shi; Roger Perkins; Hong Fang; Joshua Xu; James J Chen; Tao Han; Jim Kaput; James C Fuscoe; Weida Tong
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC bioinformatics 2008;9 Suppl 9():S17.
2007: Jianyong Wang; Zengjun Xu; Hong Fang; Helen M Duhart; Patterson Tucker; Syed F Ali
Gene expression profiling of MPP+-treated MN9D cells: a mechanism of toxicity study.
Neurotoxicology 2007;28(5):979-87.
2006: Patterson Tucker; Edward K Lobenhofer; Stephanie B Fulmer-Smentek; Patrick J Collins; Tzu-Ming Chu; Wenjun Bao; Hong Fang; Ernest S Kawasaki; Janet Hager; Irina R Tikhonova; Stephen J Walker; Liang Zhang; Patrick Hurban; Françoise de Longueville; James C Fuscoe; Weida Tong; Leming Shi; Russell D Wolfinger
Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project.
Nature biotechnology 2006;24(9):1140-50.
2006: Weida Tong; Anne Bergstrom Lucas; Richard Shippy; Xiaohui Fan; Hong Fang; Huixiao Hong; Michael S Orr; Tzu-Ming Chu; Xu Guo; Patrick J Collins; Yongming Andrew Sun; Sue-Jane Wang; Wenjun Bao; Russell D Wolfinger; Svetlana Shchegrova; Lei Guo; Janet A Warrington; Leming Shi
Evaluation of external RNA controls for the assessment of microarray performance.
Nature biotechnology 2006;24(9):1132-9.
2006: Weida Tong; Hong Fang; Qian Xie; Huixiao Hong; Leming Shi; Roger Perkins; Uwe Scherf; Federico M Goodsaid; Felix Frueh
Gaining Confidence on Molecular Classification through Consensus Modeling and Validation.
Toxicology mechanisms and methods 2006;16(2-3):59-68.
2006: Hongmei Sun; Hong Fang; Tao Chen; Roger Perkins; Weida Tong
GOFFA: gene ontology for functional analysis--a FDA gene ontology tool for analysis of genomic and proteomic data.
BMC bioinformatics 2006;7 Suppl 2():S23.
2006: Tao Chen; Lei Guo; Lu Zhang; Leming Shi; Hong Fang; Yongming Sun; James C Fuscoe; Nan Mei
Gene expression profiles distinguish the carcinogenic effects of aristolochic acid in target (kidney) and non-target (liver) tissues in rats.
BMC bioinformatics 2006;7 Suppl 2():S20.
2006: Lei Guo; Hong Fang; Jim Collins; Xiao-hui Fan; Stacey Dial; Alex Wong; Kshama Mehta; Ernice Blann; Leming Shi; Weida Tong; Yvonne P Dragan
Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists.
BMC bioinformatics 2006;7 Suppl 2():S18.
2005: Huixiao Hong; Weida Tong; Qian Xie; Hong Fang; Roger Perkins
An in silico ensemble method for lead discovery: decision forest.
SAR and QSAR in environmental research 2005;16(4):339-47.
2005: Zengjun Xu; D Cawthon; K A McCastlain; Helen M Duhart; Glenn D Newport; Hong Fang; Patterson Tucker; William Slikker; Syed F Ali
Selective alterations of transcription factors in MPP+-induced neurotoxicity in PC12 cells.
Neurotoxicology 2005;26(4):729-37.
2005: Leming Shi; Weida Tong; Hong Fang; Uwe Scherf; Jing Han; Raj K Puri; Felix W Frueh; Federico M Goodsaid; Lei Guo; Zhenqiang Su; Tao Han; James C Fuscoe; Z Alex Xu; Patterson Tucker; Huixiao Hong; Qian Xie; Roger G Perkins; Chun-houh Chen; Daniel A Casciano
Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential.
BMC bioinformatics 2005;6 Suppl 2():S12.
2005: Leming Shi; Weida Tong; Zhenqiang Su; Tao Han; Jing Han; Raj K Puri; Hong Fang; Felix W Frueh; Federico M Goodsaid; Lei Guo; William S Branham; Chun-houh Chen; Z Alex Xu; Stephen C Harris; Huixiao Hong; Qian Xie; Roger G Perkins; James C Fuscoe
Microarray scanner calibration curves: characteristics and implications.
BMC bioinformatics 2005;6 Suppl 2():S11.
2004: Weida Tong; Qian Xie; Huixiao Hong; Leming Shi; Hong Fang; Roger Perkins; Emanuel F Petricoin
Using decision forest to classify prostate cancer samples on the basis of SELDI-TOF MS data: assessing chance correlation and prediction confidence.
Environmental health perspectives 2004;112(16):1622-7.
2004: Leming Shi; Weida Tong; Federico M Goodsaid; Felix W Frueh; Hong Fang; Tao Han; James C Fuscoe; Daniel A Casciano
QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies.
Expert review of molecular diagnostics 2004;4(6):761-77.
2004: Huixiao Hong; Weida Tong; Roger Perkins; Hong Fang; Qian Xie; Leming Shi
Multiclass Decision Forest--a novel pattern recognition method for multiclass classification in microarray data analysis.
DNA and cell biology 2004;23(10):685-94.
2004: Hong Fang; Weida Tong; Leming Shi; Robert L Jakab; John F Bowyer
Classification of cDNA array genes that have a highly significant discriminative power due to their unique distribution in four brain regions.
DNA and cell biology 2004;23(10):661-74.
2004: John Young; Weida Tong; Hong Fang; Qian Xie; Bruce Pearce; Ray Hashemi; Richard Beger; Mitchell Cheeseman; James Chen; Yuan-Chin Chang; Ralph L Kodell
Building an organ-specific carcinogenic database for SAR analyses.
Journal of toxicology and environmental health. Part A 2004;67(17):1363-89.
2004: Weida Tong; Qian Xie; Huixiao Hong; Leming Shi; Hong Fang; Roger Perkins
Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity.
Environmental health perspectives 2004;112(12):1249-54.
2004: Weida Tong; Stephen Harris; Xiaoxi Cao; Hong Fang; Leming Shi; Hongmei Sun; James C Fuscoe; Angela Harris; Huixiao Hong; Qian Xie; Roger Perkins; Daniel A Casciano
Development of public toxicogenomics software for microarray data management and analysis.
Mutation research 2004;549(1-2):241-53.
2004: Varsha G Desai; Carrie L Moland; William S Branham; Robert R Delongchamp; Hong Fang; Peter H Duffy; Charlotte A Peterson; Marjorie L Beggs; James C Fuscoe
Changes in expression level of genes as a function of time of day in the liver of rats.
Mutation research 2004;549(1-2):115-29.
2004: Richard Beger; John F Young; Hong Fang
Discriminant function analyses of liver-specific carcinogens.
Journal of chemical information and computer sciences 2004;44(3):1107-10.
2003: Weida Tong; Xiaoxi Cao; Stephen Harris; Hongmei Sun; Hong Fang; James C Fuscoe; Angela Harris; Huixiao Hong; Qian Xie; Roger Perkins; Leming Shi; Daniel A Casciano
ArrayTrack--supporting toxicogenomic research at the U.S. Food and Drug Administration National Center for Toxicological Research.
Environmental health perspectives 2003;111(15):1819-26.
2003: Huixiao Hong; Hong Fang; Qian Xie; Roger Perkins; Daniel M Sheehan; Weida Tong
Comparative molecular field analysis (CoMFA) model using a large diverse set of natural, synthetic and environmental chemicals for binding to the androgen receptor.
SAR and QSAR in environmental research 2003;14(5-6):373-88.
2003: Hong Fang; Weida Tong; William S Branham; Carrie L Moland; Stacy L Dial; Huixiao Hong; Qian Xie; Roger Perkins; William Owens; Daniel M Sheehan
Study of 202 natural, synthetic, and environmental chemicals for binding to the androgen receptor.
Chemical research in toxicology 2003;16(10):1338-58.
2003: Weida Tong; WILLIAM J WELSH; Leming Shi; Hong Fang; Roger Perkins
Structure-activity relationship approaches and applications.
Environmental toxicology and chemistry / SETAC 2003;22(8):1680-95.
2003: Weida Tong; Huixiao Hong; Hong Fang; Qian Xie; Roger Perkins
Decision forest: combining the predictions of multiple independent decision tree models.
Journal of chemical information and computer sciences 2003;43(2):525-31.
2002: William S Branham; Stacy L Dial; Carrie L Moland; Bruce S Hass; Robert M Blair; Hong Fang; Leming Shi; Weida Tong; Roger G Perkins; Daniel M Sheehan
Phytoestrogens and mycoestrogens bind to the rat uterine estrogen receptor.
The Journal of nutrition 2002;132(4):658-64.
2002: Leming Shi; Weida Tong; Hong Fang; Qian Xie; Huixiao Hong; Roger Perkins; Jie Wu; M Tu; Robert M Blair; William S Branham; C Waller; J Walker; Daniel M Sheehan
An integrated "4-phase" approach for setting endocrine disruption screening priorities--phase I and II predictions of estrogen receptor binding affinity.
SAR and QSAR in environmental research 2002;13(1):69-88.
2002: Huixiao Hong; Weida Tong; Hong Fang; Leming Shi; Qian Xie; Jie Wu; Roger Perkins; John D Walker; William S Branham; Daniel M Sheehan
Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.
Environmental health perspectives 2002;110(1):29-36.
2001: Robert M Blair; Hong Fang; David W Gaylor; Daniel M Sheehan
Threshold analysis of selected dose-response data for endocrine active chemicals.
APMIS : acta pathologica, microbiologica, et immunologica Scandinavica 2001;109(3):198-208.
2001: Hong Fang; Weida Tong; L M Shi; R Blair; Roger Perkins; William S Branham; Bruce S Hass; Qian Xie; Stacy L Dial; Carrie L Moland; Daniel M Sheehan
Structure-activity relationships for a large diverse set of natural, synthetic, and environmental estrogens.
Chemical research in toxicology 2001;14(3):280-94.
2001: L M Shi; Hong Fang; Weida Tong; Jie Wu; Roger Perkins; Robert M Blair; William S Branham; Stacy L Dial; Carrie L Moland; Daniel M Sheehan
QSAR models using a large diverse set of estrogens.
Journal of chemical information and computer sciences 2001;41(1):186-95.
2000: Hong Fang; Weida Tong; Roger Perkins; Ana M Soto; Nancy V Prechtl; Daniel M Sheehan
Quantitative comparisons of in vitro assays for estrogenic activities.
Environmental health perspectives 2000;108(8):723-9.
2000: Robert M Blair; Hong Fang; William S Branham; Bruce S Hass; Stacy L Dial; Carrie L Moland; Weida Tong; Leming Shi; Roger Perkins; Daniel M Sheehan
The estrogen receptor relative binding affinities of 188 natural and xenochemicals: structural diversity of ligands.
Toxicological sciences : an official journal of the Society of Toxicology 2000;54(1):138-53.