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Alisdair Fernie
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31
Willmitzer, Lothar
29
Nunes-Nesi, Adriano
24
Carrari, Fernando
23
Lytovchenko, Anna
21
Schauer, Nicolas
17
Sweetlove, Lee
17
Geigenberger, Peter
15
Urbanczyk-Wochniak, Ewa
10
Gibon, Yves
10
Kopka, Joachim
10
Leisse, Andrea
8
Stitt, Mark
8
Roessner-Tunali, Ute
7
Roessner, Ute
7
Sonnewald, Uwe
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All Publications
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2009: Palmieri Ferdinando; Rieder Benjamin; Ventrella Angela; Blanco Emanuela; Do Phuc Thi; Nunes-Nesi Adriano; Trauth A Ulrike; Fiermonte Giuseppe; Tjaden Joachim; Agrimi Gennaro; Kirchberger Simon; Paradies Eleonora; Fernie Alisdair R; Neuhaus H Ekkehard
Molecular identification and functional characterization of Arabidopsis thaliana mitochondrial and chloroplastic NAD+ carrier proteins.
The Journal of biological chemistry 2009;284(45):31249-59.
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2009: Gilbert Louise; Alhagdow Moftah; Nunes-Nesi Adriano; Quemener Bernard; Guillon Fabienne; Bouchet Brigitte; Faurobert Mireille; Gouble Barbara; Page David; Garcia Virginie; Petit Johann; Stevens Rebecca; Causse Mathilde; Fernie Alisdair R; Lahaye Marc; Rothan Christophe; Baldet Pierre
GDP-D-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato.
The Plant journal : for cell and molecular biology 2009;60(3):499-508.
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2009: Marchive Chloe; Yehudai-Resheff Shlomit; Germain Arnaud; Fei Zhangjun; Jiang Xingshan; Judkins Joshua; Wu Hong; Fernie Alisdair R; Fait Aaron; Stern David B
Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis.
Plant physiology 2009;151(2):905-24.
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2009: Bräutigam Katharina; Dietzel Lars; Kleine Tatjana; Ströher Elke; Wormuth Dennis; Dietz Karl-Josef; Radke Dörte; Wirtz Markus; Hell Rüdiger; Dörmann Peter; Nunes-Nesi Adriano; Schauer Nicolas; Fernie Alisdair R; Oliver Sandra N; Geigenberger Peter; Leister Dario; Pfannschmidt Thomas
Dynamic plastid redox signals integrate gene expression and metabolism to induce distinct metabolic states in photosynthetic acclimation in Arabidopsis.
The Plant cell 2009;21(9):2715-32.
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2009: Wirth Judith; Poletti Susanna; Aeschlimann Beat; Yakandawala Nandadeva; Drosse Benedikt; Osorio Sonia; Tohge Takayuki; Fernie Alisdair R; Günther Detlef; Gruissem Wilhelm; Sautter Christof
Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin.
Plant biotechnology journal 2009;7(7):631-44.
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2009: Bunik Victoria I; Fernie Alisdair R
Metabolic control exerted by the 2-oxoglutarate dehydrogenase reaction: a cross-kingdom comparison of the crossroad between energy production and nitrogen assimilation.
The Biochemical journal 2009;422(3):405-21.
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2009: Zanor María Inés; Osorio Sonia; Nunes-Nesi Adriano; Carrari Fernando; Lohse Marc; Usadel Björn; Kühn Christina; Bleiss Wilfrid; Giavalisco Patrick; Willmitzer Lothar; Sulpice Ronan; Zhou Yan-Hong; Fernie Alisdair R
RNA interference of LIN5 in tomato confirms its role in controlling Brix content, uncovers the influence of sugars on the levels of fruit hormones, and demonstrates the importance of sucrose cleavage for normal fruit development and fertility.
Plant physiology 2009;150(3):1204-18.
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2009: Liu Yun-Jun; Nunes-Nesi Adriano; Wallström Sabá V; Lager Ida; Michalecka Agnieszka M; Norberg Fredrik E B; Widell Susanne; Fredlund Kenneth M; Fernie Alisdair R; Rasmusson Allan G
A redox-mediated modulation of stem bolting in transgenic Nicotiana sylvestris differentially expressing the external mitochondrial NADPH dehydrogenase.
Plant physiology 2009;150(3):1248-59.
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2009: Janacek Sophie H; Trenkamp Sandra; Palmer Ben; Brown Naomi J; Parsley Kate; Stanley Susan; Astley Holly M; Rolfe Stephen A; Paul Quick W; Fernie Alisdair R; Hibberd Julian M
Photosynthesis in cells around veins of the C(3) plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness.
The Plant journal : for cell and molecular biology 2009;59(2):329-43.
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2009: Sulpice Ronan; Pyl Eva-Theresa; Ishihara Hirofumi; Trenkamp Sandra; Steinfath Matthias; Witucka-Wall Hanna; Gibon Yves; Usadel Björn; Poree Fabien; Piques Maria Conceição; Von Korff Maria; Steinhauser Marie Caroline; Keurentjes Joost J B; Guenther Manuela; Hoehne Melanie; Selbig Joachim; Fernie Alisdair R; Altmann Thomas; Stitt Mark
Starch as a major integrator in the regulation of plant growth.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(25):10348-53.
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2009: Lehmann Martin; Schwarzländer Markus; Obata Toshihiro; Sirikantaramas Supaart; Burow Meike; Olsen Carl Erik; Tohge Takayuki; Fricker Mark D; Møller Birger Lindberg; Fernie Alisdair R; Sweetlove Lee J; Laxa Miriam
The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux.
Molecular plant 2009;2(3):390-406.
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2009: Fernie Alisdair R; Martinoia Enrico
Malate. Jack of all trades or master of a few?
Phytochemistry 2009;70(7):828-32.
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2009: Wang Hua; Schauer Nicolas; Usadel Bjoern; Frasse Pierre; Zouine Mohamed; Hernould Michel; Latché Alain; Pech Jean-Claude; Fernie Alisdair R; Bouzayen Mondher
Regulatory features underlying pollination-dependent and -independent tomato fruit set revealed by transcript and primary metabolite profiling.
The Plant cell 2009;21(5):1428-52.
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2009: Strodtkötter Inga; Padmasree Kollipara; Dinakar Challabathula; Speth Birgit; Niazi Pamela S; Wojtera Joanna; Voss Ingo; Do Phuc Thi; Nunes-Nesi Adriano; Fernie Alisdair R; Linke Vera; Raghavendra Agepati S; Scheibe Renate
Induction of the AOX1D Isoform of Alternative Oxidase in A. thaliana T-DNA Insertion Lines Lacking Isoform AOX1A Is Insufficient to Optimize Photosynthesis when Treated with Antimycin A.
Molecular plant 2009;2(2):284-97.
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2009: Tohge Takayuki; Fernie Alisdair R
Web-based resources for mass-spectrometry-based metabolomics: a user's guide.
Phytochemistry 2009;70(4):450-6.
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2009: Depuydt Stephen; Trenkamp Sandra; Fernie Alisdair R; Elftieh Samira; Renou Jean-Pierre; Vuylsteke Marnik; Holsters Marcelle; Vereecke Danny
An integrated genomics approach to define niche establishment by Rhodococcus fascians.
Plant physiology 2009;149(3):1366-86.
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2009: Tschoep Hendrik; Gibon Yves; Carillo Petronia; Armengaud Patrick; Szecowka Marek; Nunes-Nesi Adriano; Fernie Alisdair R; Koehl Karin; Stitt Mark
Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis.
Plant, cell & environment 2009;32(3):300-18.
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2009: van der Merwe Margaretha J; Osorio Sonia; Moritz Thomas; Nunes-Nesi Adriano; Fernie Alisdair R
Decreased mitochondrial activities of malate dehydrogenase and fumarase in tomato lead to altered root growth and architecture via diverse mechanisms.
Plant physiology 2009;149(2):653-69.
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2009: Fernie Alisdair R; Schauer Nicolas
Metabolomics-assisted breeding: a viable option for crop improvement?
Trends in genetics : TIG 2009;25(1):39-48.
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2009: Weigelt Kathleen; Küster Helge; Rutten Twan; Fait Aaron; Fernie Alisdair R; Miersch Otto; Wasternack Claus; Emery R J Neil; Desel Christine; Hosein Felicia; Müller Martin; Saalbach Isolde; Weber Hans
ADP-glucose pyrophosphorylase-deficient pea embryos reveal specific transcriptional and metabolic changes of carbon-nitrogen metabolism and stress responses.
Plant physiology 2009;149(1):395-411.
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2009: van Dongen Joost T; Fröhlich Anja; Ramírez-Aguilar Santiago J; Schauer Nicolas; Fernie Alisdair R; Erban Alexander; Kopka Joachim; Clark Jeremy; Langer Anke; Geigenberger Peter
Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants.
Annals of botany 2009;103(2):269-80.
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2009: Lytovchenko Anna; Beleggia Romina; Schauer Nicolas; Isaacson Tal; Leuendorf Jan E; Hellmann Hanjo; Rose Jocelyn Kc; Fernie Alisdair R
Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues.
Plant methods 2009;5():4.
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2009: Zanor Maria Inés; Rambla José-Luis; Chaïb Jamila; Steppa Agnes; Medina Aurora; Granell Antonio; Fernie Alisdair R; Causse Mathilde
Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents.
Journal of experimental botany 2009;60(7):2139-54.
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2008: Palmieri Luigi; Santoro Antonella; Carrari Fernando; Blanco Emanuela; Nunes-Nesi Adriano; Arrigoni Roberto; Genchi Francesco; Fernie Alisdair R; Palmieri Ferdinando
Identification and characterization of ADNT1, a novel mitochondrial adenine nucleotide transporter from Arabidopsis.
Plant physiology 2008;148(4):1797-808.
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2008: Araújo Wagner L; Nunes-Nesi Adriano; Trenkamp Sandra; Bunik Victoria I; Fernie Alisdair R
Inhibition of 2-oxoglutarate dehydrogenase in potato tuber suggests the enzyme is limiting for respiration and confirms its importance in nitrogen assimilation,.
Plant physiology 2008;148(4):1782-96.
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2008: Oliver Sandra N; Lunn John E; Urbanczyk-Wochniak Ewa; Lytovchenko Anna; van Dongen Joost T; Faix Benjamin; Schmälzlin Elmar; Fernie Alisdair R; Geigenberger Peter
Decreased expression of cytosolic pyruvate kinase in potato tubers leads to a decline in pyruvate resulting in an in vivo repression of the alternative oxidase.
Plant physiology 2008;148(3):1640-54.
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2008: Fettke Joerg; Nunes-Nesi Adriano; Alpers Jessica; Szkop Michal; Fernie Alisdair R; Steup Martin
Alterations in cytosolic glucose-phosphate metabolism affect structural features and biochemical properties of starch-related heteroglycans.
Plant physiology 2008;148(3):1614-29.
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2008: Schippers Jos H M; Nunes-Nesi Adriano; Apetrei Roxana; Hille Jacques; Fernie Alisdair R; Dijkwel Paul P
The Arabidopsis onset of leaf death5 mutation of quinolinate synthase affects nicotinamide adenine dinucleotide biosynthesis and causes early ageing.
The Plant cell 2008;20(10):2909-25.
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2008: Timm Stefan; Nunes-Nesi Adriano; Pärnik Tiit; Morgenthal Katja; Wienkoop Stefanie; Keerberg Olav; Weckwerth Wolfram; Kleczkowski Leszek A; Fernie Alisdair R; Bauwe Hermann
A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis.
The Plant cell 2008;20(10):2848-59.
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2008: Riewe David; Grosman Lukasz; Fernie Alisdair R; Zauber Henrik; Wucke Cornelia; Geigenberger Peter
A cell wall-bound adenosine nucleosidase is involved in the salvage of extracellular ATP in Solanum tuberosum.
Plant & cell physiology 2008;49(10):1572-9.
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2008: Fait Aaron; Hanhineva Kati; Beleggia Romina; Dai Nir; Rogachev Ilana; Nikiforova Victoria J; Fernie Alisdair R; Aharoni Asaph
Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development.
Plant physiology 2008;148(2):730-50.
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2008: Weigelt Kathleen; Küster Helge; Radchuk Ruslana; Müller Martin; Weichert Heiko; Fait Aaron; Fernie Alisdair R; Saalbach Isolde; Weber Hans
Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism.
The Plant journal : for cell and molecular biology 2008;55(6):909-26.
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2008: Centeno Danilo C; Oliver Sandra N; Nunes-Nesi Adriano; Geigenberger Peter; Machado Daniel N; Loureiro Marcelo Ehlers; Silva Marco A P; Fernie Alisdair R
Metabolic regulation of pathways of carbohydrate oxidation in potato (Solanum tuberosum) tubers.
Physiologia plantarum 2008;133(4):744-54.
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2008: Allen Andrew E; Laroche Julie; Maheswari Uma; Lommer Markus; Schauer Nicolas; Lopez Pascal J; Finazzi Giovanni; Fernie Alisdair R; Bowler Chris
Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(30):10438-43.
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2008: Riewe David; Grosman Lukasz; Fernie Alisdair R; Wucke Cornelia; Geigenberger Peter
The potato-specific apyrase is apoplastically localized and has influence on gene expression, growth, and development.
Plant physiology 2008;147(3):1092-109.
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2008: Sienkiewicz-Porzucek Agata; Nunes-Nesi Adriano; Sulpice Ronan; Lisec Jan; Centeno Danilo C; Carillo Petronia; Leisse Andrea; Urbanczyk-Wochniak Ewa; Fernie Alisdair R
Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth.
Plant physiology 2008;147(1):115-27.
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2008: Morgan Megan J; Lehmann Martin; Schwarzländer Markus; Baxter Charles J; Sienkiewicz-Porzucek Agata; Williams Thomas C R; Schauer Nicolas; Fernie Alisdair R; Fricker Mark D; Ratcliffe R George; Sweetlove Lee J; Finkemeier Iris
Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic acid cycle flux and mitochondrial redox homeostasis.
Plant physiology 2008;147(1):101-14.
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2008: Riewe David; Grosman Lukasz; Zauber Henrik; Wucke Cornelia; Fernie Alisdair R; Geigenberger Peter
Metabolic and developmental adaptations of growing potato tubers in response to specific manipulations of the adenylate energy status.
Plant physiology 2008;146(4):1579-98.
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2008: Ruffel Sandrine; Freixes Sandra; Balzergue Sandrine; Tillard Pascal; Jeudy Christian; Martin-Magniette Marie Laure; van der Merwe Margaretha J; Kakar Klementina; Gouzy Jerôme; Fernie Alisdair R; Udvardi Michael; Salon Christophe; Gojon Alain; Lepetit Marc
Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula.
Plant physiology 2008;146(4):2020-35.
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2008: Schauer Nicolas; Semel Yaniv; Balbo Ilse; Steinfath Matthias; Repsilber Dirk; Selbig Joachim; Pleban Tzili; Zamir Dani; Fernie Alisdair R
Mode of inheritance of primary metabolic traits in tomato.
The Plant cell 2008;20(3):509-23.
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2008: Böttcher Christoph; Centeno Danilo; Freitag Jens; Höfgen Rainer; Köhl Karin; Kopka Joachim; Kroymann Juergen; Matros Andrea; Mock Hans-Peter; Neumann Stefan; Pfalz Marina; von Roepenack-Lahaye Edda; Schauer Nicolas; Trenkamp Sandra; Zubriggen Matias; Fernie Alisdair R
Teaching (and learning from) metabolomics: the 2006 PlantMetaNet ETNA Metabolomics Research School.
Physiologia plantarum 2008;132(2):136-49.
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2008: Fait Aaron; Fromm Hillel; Walter Dirk; Galili Gad; Fernie Alisdair R
Highway or byway: the metabolic role of the GABA shunt in plants.
Trends in plant science 2008;13(1):14-9.
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2008: Sweetlove Lee J; Fell David; Fernie Alisdair R
Getting to grips with the plant metabolic network.
The Biochemical journal 2008;409(1):27-41.
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2008: Chen Shuai; Hajirezaei Mohammad R; Zanor María-Inés; Hornyik Csaba; Debast Stefan; Lacomme Christophe; Fernie Alisdair R; Sonnewald Uwe; Börnke Frederik
RNA interference-mediated repression of sucrose-phosphatase in transgenic potato tubers (Solanum tuberosum) strongly affects the hexose-to-sucrose ratio upon cold storage with only minor effects on total soluble carbohydrate accumulation.
Plant, cell & environment 2008;31(1):165-76.
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2008: DaMatta Fábio M; Cunha Roberto L; Antunes Werner C; Martins Samuel C V; Araujo Wagner L; Fernie Alisdair R; Moraes Gustavo A B K
In field-grown coffee trees source-sink manipulation alters photosynthetic rates, independently of carbon metabolism, via alterations in stomatal function.
The New phytologist 2008;178(2):348-57.
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2008: Nunes-Nesi Adriano; Sulpice Ronan; Gibon Yves; Fernie Alisdair R
The enigmatic contribution of mitochondrial function in photosynthesis.
Journal of experimental botany 2008;59(7):1675-84.
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2008: Oliver Sandra N; Tiessen Axel; Fernie Alisdair R; Geigenberger Peter
Decreased expression of plastidial adenylate kinase in potato tubers results in an enhanced rate of respiration and a stimulation of starch synthesis that is attributable to post-translational redox-activation of ADP-glucose pyrophosphorylase.
Journal of experimental botany 2008;59(2):315-25.
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2007: Raschke Maja; Bürkle Lukas; Müller Nadine; Nunes-Nesi Adriano; Fernie Alisdair R; Arigoni Duilio; Amrhein Nikolaus; Fitzpatrick Teresa B
Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(49):19637-42.
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2007: Alhagdow Moftah; Mounet Fabien; Gilbert Louise; Nunes-Nesi Adriano; Garcia Virginie; Just Daniel; Petit Johann; Beauvoit Bertrand; Fernie Alisdair R; Rothan Christophe; Baldet Pierre
Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato.
Plant physiology 2007;145(4):1408-22.
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2007: Graham James W A; Williams Thomas C R; Morgan Megan; Fernie Alisdair R; Ratcliffe R George; Sweetlove Lee J
Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling.
The Plant cell 2007;19(11):3723-38.
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2007: Studart-Guimarães Claudia; Fait Aaron; Nunes-Nesi Adriano; Carrari Fernando; Usadel Björn; Fernie Alisdair R
Reduced expression of succinyl-coenzyme A ligase can be compensated for by up-regulation of the gamma-aminobutyrate shunt in illuminated tomato leaves.
Plant physiology 2007;145(3):626-39.
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2007: Fahnenstich Holger; Saigo Mariana; Niessen Michaela; Zanor María I; Andreo Carlos S; Fernie Alisdair R; Drincovich María F; Flügge Ulf-Ingo; Maurino Verónica G
Alteration of organic acid metabolism in Arabidopsis overexpressing the maize C4 NADP-malic enzyme causes accelerated senescence during extended darkness.
Plant physiology 2007;145(3):640-52.
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2007: Fernie Alisdair R
The future of metabolic phytochemistry: larger numbers of metabolites, higher resolution, greater understanding.
Phytochemistry 2007;68(22-24):2861-80.
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2007: Baxter C J; Liu J L; Fernie A R; Sweetlove L J
Determination of metabolic fluxes in a non-steady-state system.
Phytochemistry 2007;68(16-18):2313-9.
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2007: Szymanski Jedrzej; Bielecka Monika; Carrari Fernando; Fernie Alisdair R; Hoefgen Rainer; Nikiforova Victoria J
On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality.
Phytochemistry 2007;68(16-18):2163-75.
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2007: Footitt Steven; Dietrich Daniela; Fait Aaron; Fernie Alisdair R; Holdsworth Michael J; Baker Alison; Theodoulou Frederica L
The COMATOSE ATP-binding cassette transporter is required for full fertility in Arabidopsis.
Plant physiology 2007;144(3):1467-80.
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2007: Lemaitre Thomas; Urbanczyk-Wochniak Ewa; Flesch Valerie; Bismuth Evelyne; Fernie Alisdair R; Hodges Michael
NAD-dependent isocitrate dehydrogenase mutants of Arabidopsis suggest the enzyme is not limiting for nitrogen assimilation.
Plant physiology 2007;144(3):1546-58.
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2007: Nunes-Nesi Adriano; Carrari Fernando; Gibon Yves; Sulpice Ronan; Lytovchenko Anna; Fisahn Joachim; Graham James; Ratcliffe R George; Sweetlove Lee J; Fernie Alisdair R
Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function.
The Plant journal : for cell and molecular biology 2007;50(6):1093-106.
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2007: Saladié Montserrat; Matas Antonio J; Isaacson Tal; Jenks Matthew A; Goodwin S Mark; Niklas Karl J; Xiaolin Ren; Labavitch John M; Shackel Kenneth A; Fernie Alisdair R; Lytovchenko Anna; O'Neill Malcolm A; Watkins Chris B; Rose Jocelyn K C
A reevaluation of the key factors that influence tomato fruit softening and integrity.
Plant physiology 2007;144(2):1012-28.
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2007: Lytovchenko Anna; Sonnewald Uwe; Fernie Alisdair R
The complex network of non-cellulosic carbohydrate metabolism.
Current opinion in plant biology 2007;10(3):227-35.
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2007: Steuer Ralf; Nesi Adriano Nunes; Fernie Alisdair R; Gross Thilo; Blasius Bernd; Selbig Joachim
From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle.
Bioinformatics (Oxford, England) 2007;23(11):1378-85.
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2007: Messerli Gaëlle; Partovi Nia Vahid; Trevisan Martine; Kolbe Anna; Schauer Nicolas; Geigenberger Peter; Chen Jychian; Davison Anthony C; Fernie Alisdair R; Zeeman Samuel C
Rapid classification of phenotypic mutants of Arabidopsis via metabolite fingerprinting.
Plant physiology 2007;143(4):1484-92.
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2007: Frankel Nicolás; Nunes-Nesi Adriano; Balbo Ilse; Mazuch Jeannine; Centeno Danilo; Iusem Norberto D; Fernie Alisdair R; Carrari Fernando
ci21A/Asr1 expression influences glucose accumulation in potato tubers.
Plant molecular biology 2007;63(5):719-30.
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2007: Baxter Charles J; Redestig Henning; Schauer Nicolas; Repsilber Dirk; Patil Kiran R; Nielsen Jens; Selbig Joachim; Liu Junli; Fernie Alisdair R; Sweetlove Lee J
The metabolic response of heterotrophic Arabidopsis cells to oxidative stress.
Plant physiology 2007;143(1):312-25.
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2007: Ding Li; Hofius Daniel; Hajirezaei Mohammad-Reza; Fernie Alisdair R; Börnke Frederik; Sonnewald Uwe
Functional analysis of the essential bifunctional tobacco enzyme 3-dehydroquinate dehydratase/shikimate dehydrogenase in transgenic tobacco plants.
Journal of experimental botany 2007;58(8):2053-67.
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2007: Urbanczyk-Wochniak Ewa; Willmitzer Lothar; Fernie Alisdair R
Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites.
Methods in molecular biology (Clifton, N.J.) 2007;358():77-85.
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2007: Erban Alexander; Schauer Nicolas; Fernie Alisdair R; Kopka Joachim
Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles.
Methods in molecular biology (Clifton, N.J.) 2007;358():19-38.
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2006: Joshi Vijay; Laubengayer Karen M; Schauer Nicolas; Fernie Alisdair R; Jander Georg
Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool.
The Plant cell 2006;18(12):3564-75.
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2006: Sweetlove Lee J; Lytovchenko Anna; Morgan Megan; Nunes-Nesi Adriano; Taylor Nicolas L; Baxter Charles J; Eickmeier Ira; Fernie Alisdair R
Mitochondrial uncoupling protein is required for efficient photosynthesis.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(51):19587-92.
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2006: Carrari Fernando; Baxter Charles; Usadel Björn; Urbanczyk-Wochniak Ewa; Zanor Maria-Ines; Nunes-Nesi Adriano; Nikiforova Victoria; Centero Danilo; Ratzka Antje; Pauly Markus; Sweetlove Lee J; Fernie Alisdair R
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior.
Plant physiology 2006;142(4):1380-96.
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2006: Fait Aaron; Angelovici Ruthie; Less Hadar; Ohad Itzhak; Urbanczyk-Wochniak Ewa; Fernie Alisdair R; Galili Gad
Arabidopsis seed development and germination is associated with temporally distinct metabolic switches.
Plant physiology 2006;142(3):839-54.
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2006: Palmieri Luigi; Arrigoni Roberto; Blanco Emanuela; Carrari Fernando; Zanor Maria Ines; Studart-Guimaraes Claudia; Fernie Alisdair R; Palmieri Ferdinando
Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization.
Plant physiology 2006;142(3):855-65.
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2006: Schauer Nicolas; Fernie Alisdair R
Plant metabolomics: towards biological function and mechanism.
Trends in plant science 2006;11(10):508-16.
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2006: Ishizaki Kimitsune; Schauer Nicolas; Larson Tony R; Graham Ian A; Fernie Alisdair R; Leaver Christopher J
The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness.
The Plant journal : for cell and molecular biology 2006;47(5):751-60.
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2006: Farré Eva M; Tech Susanne; Trethewey Richard N; Fernie Alisdair R; Willmitzer Lothar
Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum).
Plant molecular biology 2006;62(1-2):165-79.
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2006: Wagner Susan; Bernhardt Anne; Leuendorf Jan Erik; Drewke Christel; Lytovchenko Anna; Mujahed Nader; Gurgui Cristian; Frommer Wolf B; Leistner Eckhard; Fernie Alisdair R; Hellmann Hanjo
Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis.
The Plant cell 2006;18(7):1722-35.
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2006: Kolbe Anna; Oliver Sandra N; Fernie Alisdair R; Stitt Mark; van Dongen Joost T; Geigenberger Peter
Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism.
Plant physiology 2006;141(2):412-22.
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2006: Tieman Denise; Taylor Mark; Schauer Nicolas; Fernie Alisdair R; Hanson Andrew D; Klee Harry J
Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(21):8287-92.
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2006: Schauer Nicolas; Semel Yaniv; Roessner Ute; Gur Amit; Balbo Ilse; Carrari Fernando; Pleban Tzili; Perez-Melis Alicia; Bruedigam Claudia; Kopka Joachim; Willmitzer Lothar; Zamir Dani; Fernie Alisdair R
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement.
Nature biotechnology 2006;24(4):447-54.
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2006: Fernie Alisdair R; Tadmor Yaakov; Zamir Dani
Natural genetic variation for improving crop quality.
Current opinion in plant biology 2006;9(2):196-202.
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2006: Urbanczyk-Wochniak Ewa; Usadel Björn; Thimm Oliver; Nunes-Nesi Adriano; Carrari Fernando; Davy Marcus; Bläsing Oliver; Kowalczyk Magdalena; Weicht Daniel; Polinceusz Anna; Meyer Svenja; Stitt Mark; Fernie Alisdair R
Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf.
Plant molecular biology 2006;60(5):773-92.
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2006: Junker Bjoern H; Wuttke Rene; Nunes-Nesi Adriano; Steinhauser Dirk; Schauer Nicolas; Büssis Dirk; Willmitzer Lothar; Fernie Alisdair R
Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism.
Plant & cell physiology 2006;47(2):277-89.
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2006: Hackel Aleksandra; Schauer Nicolas; Carrari Fernando; Fernie Alisdair R; Grimm Bernhard; Kühn Christina
Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways.
The Plant journal : for cell and molecular biology 2006;45(2):180-92.
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2006: Lisec Jan; Schauer Nicolas; Kopka Joachim; Willmitzer Lothar; Fernie Alisdair R
Gas chromatography mass spectrometry-based metabolite profiling in plants.
Nature protocols 2006;1(1):387-96.
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2006: Usadel Björn; Nagel Axel; Steinhauser Dirk; Gibon Yves; Bläsing Oliver E; Redestig Henning; Sreenivasulu Nese; Krall Leonard; Hannah Matthew A; Poree Fabien; Fernie Alisdair R; Stitt Mark
PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.
BMC bioinformatics 2006;7():535.
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2006: Hajirezaei Mohammad-Reza; Biemelt Sophia; Peisker Martin; Lytovchenko Anna; Fernie Alisdair R; Sonnewald Uwe
The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism.
Journal of experimental botany 2006;57(10):2363-77.
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2006: Carrari Fernando; Fernie Alisdair R
Metabolic regulation underlying tomato fruit development.
Journal of experimental botany 2006;57(9):1883-97.
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2005: Nunes-Nesi A; Carrari F; Lytovchenko A; Fernie A R
Enhancing crop yield in Solanaceous species through the genetic manipulation of energy metabolism.
Biochemical Society transactions 2005;33(Pt 6):1430-4.
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2005: Studart-Guimarães Claudia; Gibon Yves; Frankel Nicolás; Wood Craig C; Zanor María Inés; Fernie Alisdair R; Carrari Fernando
Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato.
Plant molecular biology 2005;59(5):781-91.
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2005: Sweetlove Lee J; Fernie Alisdair R
Regulation of metabolic networks: understanding metabolic complexity in the systems biology era.
The New phytologist 2005;168(1):9-24.
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2005: Ishizaki Kimitsune; Larson Tony R; Schauer Nicolas; Fernie Alisdair R; Graham Ian A; Leaver Christopher J
The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation.
The Plant cell 2005;17(9):2587-600.
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2005: Lytovchenko Anna; Hajirezaei Mohammad; Eickmeier Ira; Mittendorf Volker; Sonnewald Uwe; Willmitzer Lothar; Fernie Alisdair R
Expression of an Escherichia coli phosphoglucomutase in potato (Solanum tuberosum L.) results in minor changes in tuber metabolism and a considerable delay in tuber sprouting.
Planta 2005;221(6):915-27.
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2005: Urbanczyk-Wochniak Ewa; Baxter Charles; Kolbe Anna; Kopka Joachim; Sweetlove Lee J; Fernie Alisdair R
Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves.
Planta 2005;221(6):891-903.
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2005: Geigenberger Peter; Regierer Babette; Nunes-Nesi Adriano; Leisse Andrea; Urbanczyk-Wochniak Ewa; Springer Franziska; van Dongen Joost T; Kossmann Jens; Fernie Alisdair R
Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance.
The Plant cell 2005;17(7):2077-88.
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2005: Davies Howard V; Shepherd Louise V T; Burrell Michael M; Carrari Fernando; Urbanczyk-Wochniak Ewa; Leisse Andrea; Hancock Robert D; Taylor Mark; Viola Roberto; Ross Heather; McRae Diane; Willmitzer Lothar; Fernie Alisdair R
Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism.
Plant & cell physiology 2005;46(7):1103-15.
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2005: Fernie Alisdair R; Geigenberger Peter; Stitt Mark
Flux an important, but neglected, component of functional genomics.
Current opinion in plant biology 2005;8(2):174-82.
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2005: Lytovchenko Anna; Schauer Nicolas; Willmitzer Lothar; Fernie Alisdair R
Tuber-specific cytosolic expression of a bacterial phosphoglucomutase in potato (Solanum tuberosum L.) dramatically alters carbon partitioning.
Plant & cell physiology 2005;46(4):588-97.
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2005: Kopka Joachim; Schauer Nicolas; Krueger Stephan; Birkemeyer Claudia; Usadel Björn; Bergmüller Eveline; Dörmann Peter; Weckwerth Wolfram; Gibon Yves; Stitt Mark; Willmitzer Lothar; Fernie Alisdair R; Steinhauser Dirk
GMD@CSB.DB: the Golm Metabolome Database.
Bioinformatics (Oxford, England) 2005;21(8):1635-8.
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2005: Baxter Charles J; Carrari Fernando; Bauke Antje; Overy Sarah; Hill Steven A; Quick Paul W; Fernie Alisdair R; Sweetlove Lee J
Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids.
Plant & cell physiology 2005;46(3):425-37.
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2005: Schauer Nicolas; Steinhauser Dirk; Strelkov Sergej; Schomburg Dietmar; Allison Gordon; Moritz Thomas; Lundgren Krister; Roessner-Tunali Ute; Forbes Megan G; Willmitzer Lothar; Fernie Alisdair R; Kopka Joachim
GC-MS libraries for the rapid identification of metabolites in complex biological samples.
FEBS letters 2005;579(6):1332-7.
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2005: Nunes-Nesi Adriano; Carrari Fernando; Lytovchenko Anna; Smith Anna M O; Loureiro Marcelo Ehlers; Ratcliffe R George; Sweetlove Lee J; Fernie Alisdair R
Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants.
Plant physiology 2005;137(2):611-22.
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2005: Carrari Fernando; Coll-Garcia Danahe; Schauer Nicolas; Lytovchenko Anna; Palacios-Rojas Natalia; Balbo Ilse; Rosso Mario; Fernie Alisdair R
Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth.
Plant physiology 2005;137(1):70-82.
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2005: Schauer Nicolas; Zamir Dani; Fernie Alisdair R
Metabolic profiling of leaves and fruit of wild species tomato: a survey of the Solanum lycopersicum complex.
Journal of experimental botany 2005;56(410):297-307.
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2005: Urbanczyk-Wochniak Ewa; Fernie Alisdair R
Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants.
Journal of experimental botany 2005;56(410):309-21.
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2004: Junker Björn H; Wuttke René; Tiessen Axel; Geigenberger Peter; Sonnewald Uwe; Willmitzer Lothar; Fernie Alisdair R
Temporally regulated expression of a yeast invertase in potato tubers allows dissection of the complex metabolic phenotype obtained following its constitutive expression.
Plant molecular biology 2004;56(1):91-110.
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2004: Fridman Eyal; Carrari Fernando; Liu Yong-Sheng; Fernie Alisdair R; Zamir Dani
Zooming in on a quantitative trait for tomato yield using interspecific introgressions.
Science (New York, N.Y.) 2004;305(5691):1786-9.
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2004: Fernie Alisdair R; Trethewey Richard N; Krotzky Arno J; Willmitzer Lothar
Metabolite profiling: from diagnostics to systems biology.
Nature reviews. Molecular cell biology 2004;5(9):763-9.
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2004: Roessner-Tunali Ute; Liu JunLi; Leisse Andrea; Balbo Ilse; Perez-Melis Alicia; Willmitzer Lothar; Fernie Alisdair R
Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in (13)C labelled isotopes.
The Plant journal : for cell and molecular biology 2004;39(4):668-79.
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2004: Bender-Machado Lilia; Bäuerlein Michael; Carrari Fernando; Schauer Nicolas; Lytovchenko Anna; Gibon Yves; Kelly Amelie A; Loureiro Marcello; Müller-Röber Bernd; Willmitzer Lothar; Fernie Alisdair R
Expression of a yeast acetyl CoA hydrolase in the mitochondrion of tobacco plants inhibits growth and restricts photosynthesis.
Plant molecular biology 2004;55(5):645-62.
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2004: Obiadalla-Ali Hazem; Fernie Alisdair R; Lytovchenko Anna; Kossmann Jens; Lloyd James R
Inhibition of chloroplastic fructose 1,6-bisphosphatase in tomato fruits leads to decreased fruit size, but only small changes in carbohydrate metabolism.
Planta 2004;219(3):533-40.
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2004: Fernie Alisdair R; Carrari Fernando; Sweetlove Lee J
Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport.
Current opinion in plant biology 2004;7(3):254-61.
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2004: Debnam Phillip M; Fernie Alisdair R; Leisse Andrea; Golding Alison; Bowsher Caroline G; Grimshaw Caroline; Knight Jacqueline S; Emes Michael J
Altered activity of the P2 isoform of plastidic glucose 6-phosphate dehydrogenase in tobacco (Nicotiana tabacum cv. Samsun) causes changes in carbohydrate metabolism and response to oxidative stress in leaves.
The Plant journal : for cell and molecular biology 2004;38(1):49-59.
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2004: Carrari Fernando; Fernie Alisdair R; Iusem Norberto D
Heard it through the grapevine? ABA and sugar cross-talk: the ASR story.
Trends in plant science 2004;9(2):57-9.
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2004: Geigenberger Peter; Regierer Babette; Lytovchenko Anna; Leisse Andrea; Schauer Nicolas; Springer Fransiska; Kossmann Jens; Fernie Alisdair R
Heterologous expression of a ketohexokinase in potato plants leads to inhibited rates of photosynthesis, severe growth retardation and abnormal leaf development.
Planta 2004;218(4):569-78.
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2004: Kopka Joachim; Fernie Alisdair; Weckwerth Wolfram; Gibon Yves; Stitt Mark
Metabolite profiling in plant biology: platforms and destinations.
Genome biology 2004;5(6):109.
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2003: Urbanczyk-Wochniak Ewa; Leisse Andrea; Roessner-Tunali Ute; Lytovchenko Anna; Reismeier Jörg; Willmitzer Lothar; Fernie Alisdair R
Expression of a bacterial xylose isomerase in potato tubers results in an altered hexose composition and a consequent induction of metabolism.
Plant & cell physiology 2003;44(12):1359-67.
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2003: Carrari Fernando; Nunes-Nesi Adriano; Gibon Yves; Lytovchenko Anna; Loureiro Marcelo Ehlers; Fernie Alisdair R
Reduced expression of aconitase results in an enhanced rate of photosynthesis and marked shifts in carbon partitioning in illuminated leaves of wild species tomato.
Plant physiology 2003;133(3):1322-35.
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2003: Roessner-Tunali Ute; Urbanczyk-Wochniak Ewa; Czechowski Tomasz; Kolbe Anna; Willmitzer Lothar; Fernie Alisdair R
De novo amino acid biosynthesis in potato tubers is regulated by sucrose levels.
Plant physiology 2003;133(2):683-92.
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2003: Urbanczyk-Wochniak Ewa; Luedemann Alexander; Kopka Joachim; Selbig Joachim; Roessner-Tunali Ute; Willmitzer Lothar; Fernie Alisdair R
Parallel analysis of transcript and metabolic profiles: a new approach in systems biology.
EMBO reports 2003;4(10):989-93.
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2003: Roessner-Tunali Ute; Hegemann Björn; Lytovchenko Anna; Carrari Fernando; Bruedigam Claudia; Granot David; Fernie Alisdair R
Metabolic profiling of transgenic tomato plants overexpressing hexokinase reveals that the influence of hexose phosphorylation diminishes during fruit development.
Plant physiology 2003;133(1):84-99.
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2003: Giegé Philippe; Heazlewood Joshua L; Roessner-Tunali Ute; Millar A Harvey; Fernie Alisdair R; Leaver Christopher J; Sweetlove Lee J
Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells.
The Plant cell 2003;15(9):2140-51.
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2003: Bologa Karin L; Fernie Alisdair R; Leisse Andrea; Loureiro Marcello Ehlers; Geigenberger Peter
A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers.
Plant physiology 2003;132(4):2058-72.
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2003: Carrari Fernando; Urbanczyk-Wochniak Ewa; Willmitzer Lothar; Fernie Alisdair R
Engineering central metabolism in crop species: learning the system.
Metabolic engineering 2003;5(3):191-200.
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2003: Sweetlove Lee J; Last Robert L; Fernie Alisdair R
Predictive metabolic engineering: a goal for systems biology.
Plant physiology 2003;132(2):420-5.
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2003: Leggewie Georg; Kolbe Anna; Lemoine Rémi; Roessner Ute; Lytovchenko Anna; Zuther Ellen; Kehr Julia; Frommer Wolf B; Riesmeier Jörg W; Willmitzer Lothar; Fernie Alisdair R
Overexpression of the sucrose transporter SoSUT1 in potato results in alterations in leaf carbon partitioning and in tuber metabolism but has little impact on tuber morphology.
Planta 2003;217(1):158-67.
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2003: Stitt Mark; Fernie Alisdair R
From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions.
Current opinion in biotechnology 2003;14(2):136-44.
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2003: Junker Björn H; Chu Chengcai; Sonnewald Uwe; Willmitzer Lothar; Fernie Alisdair R
In plants the alc gene expression system responds more rapidly following induction with acetaldehyde than with ethanol.
FEBS letters 2003;535(1-3):136-40.
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2003: Kühn Christina; Hajirezaei Mohammad-Reza; Fernie Alisdair R; Roessner-Tunali Ute; Czechowski Tomasz; Hirner Brigitte; Frommer Wolf B
The sucrose transporter StSUT1 localizes to sieve elements in potato tuber phloem and influences tuber physiology and development.
Plant physiology 2003;131(1):102-13.
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2002: Regierer Babette; Fernie Alisdair R; Springer Franziska; Perez-Melis Alicia; Leisse Andrea; Koehl Karin; Willmitzer Lothar; Geigenberger Peter; Kossmann Jens
Starch content and yield increase as a result of altering adenylate pools in transgenic plants.
Nature biotechnology 2002;20(12):1256-60.
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2002: Lytovchenko Anna; Sweetlove Lee; Pauly Markus; Fernie Alisdair R
The influence of cytosolic phosphoglucomutase on photosynthetic carbohydrate metabolism.
Planta 2002;215(6):1013-21.
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2002: Lytovchenko Anna; Bieberich Katrin; Willmitzer Lothar; Fernie Alisdair R
Carbon assimilation and metabolism in potato leaves deficient in plastidial phosphoglucomutase.
Planta 2002;215(5):802-11.
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2002: Veramendi Jon; Fernie Alisdair R; Leisse Andrea; Willmitzer Lothar; Trethewey Richard N
Potato hexokinase 2 complements transgenic Arabidopsis plants deficient in hexokinase 1 but does not play a key role in tuber carbohydrate metabolism.
Plant molecular biology 2002;49(5):491-501.
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2002: Fernie Alisdair R; Tauberger Eva; Lytovchenko Anna; Roessner Ute; Willmitzer Lothar; Trethewey Richard N
Antisense repression of cytosolic phosphoglucomutase in potato (Solanum tuberosum) results in severe growth retardation, reduction in tuber number and altered carbon metabolism.
Planta 2002;214(4):510-20.
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2002: Fernie Alisdair R; Willmitzer Lothar; Trethewey Richard N
Sucrose to starch: a transition in molecular plant physiology.
Trends in plant science 2002;7(1):35-41.
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2001: Fernie A R; Willmitzer L
Molecular and biochemical triggers of potato tuber development.
Plant physiology 2001;127(4):1459-65.
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2001: Roessner U; Willmitzer L; Fernie A R
High-resolution metabolic phenotyping of genetically and environmentally diverse potato tuber systems. Identification of phenocopies.
Plant physiology 2001;127(3):749-64.
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2001: Fernie A R; Roessner U; Trethewey R N; Willmitzer L
The contribution of plastidial phosphoglucomutase to the control of starch synthesis within the potato tuber.
Planta 2001;213(3):418-26.
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2001: Fernie A R; Roessner U; Geigenberger P
The sucrose analog palatinose leads to a stimulation of sucrose degradation and starch synthesis when supplied to discs of growing potato tubers.
Plant physiology 2001;125(4):1967-77.
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2001: Fernie A R; Roscher A; Ratcliffe R G; Kruger N J
Fructose 2,6-bisphosphate activates pyrophosphate: fructose-6-phosphate 1-phosphotransferase and increases triose phosphate to hexose phosphate cycling in heterotrophic cells.
Planta 2001;212(2):250-63.
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2001: Roessner U; Luedemann A; Brust D; Fiehn O; Linke T; Willmitzer L; Fernie A
Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems.
The Plant cell 2001;13(1):11-29.
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2000: Tauberger E; Fernie A R; Emmermann M; Renz A; Kossmann J; Willmitzer L; Trethewey R N
Antisense inhibition of plastidial phosphoglucomutase provides compelling evidence that potato tuber amyloplasts import carbon from the cytosol in the form of glucose-6-phosphate.
The Plant journal : for cell and molecular biology 2000;23(1):43-53.
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