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Scott Ficarro

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Publications

TOP 3
James T Webber; Manor Askenazi; Scott B Ficarro; Max A Iglehart; Jarrod A Marto
Library dependent LC-MS/MS acquisition via mzAPI/Live.
Daqi Tu; Shenghong Yang; Cai-hong Yun; Alicia Y Zhou; Zehua Zhu; David A Barbie; Edmond Chan; Gavin P Dunn; Scott B Ficarro; William C Hahn; Hyesung Jeon; Kyung-Eun Lee; Yiqun Li; Jarrod A Marto; Tran Thai; Angela V Toms; Michael J Eck
Structure and ubiquitination-dependent activation of TANK-binding kinase 1.
Pilar Caro; Bjoern Chapuy; Linfeng Chen; Scott B Ficarro; John Gounarides; Michael Green; Amar U Kishan; Jarrod A Marto; Stefano Monti; Erik Norberg; Klaudia Polak; Margaret A Shipp; Illana A Stanley; Daniel Tondera; Hong Yin; Feng Zhou; Nika N Danial
Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma.

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All Publications

2013: James T Webber; Manor Askenazi; Scott B Ficarro; Max A Iglehart; Jarrod A Marto
Library dependent LC-MS/MS acquisition via mzAPI/Live.
Proteomics 2013;13(9):1412-6.
2013: Daqi Tu; Shenghong Yang; Cai-hong Yun; Alicia Y Zhou; Zehua Zhu; David A Barbie; Edmond Chan; Gavin P Dunn; Scott B Ficarro; William C Hahn; Hyesung Jeon; Kyung-Eun Lee; Yiqun Li; Jarrod A Marto; Tran Thai; Angela V Toms; Michael J Eck
Structure and ubiquitination-dependent activation of TANK-binding kinase 1.
Cell reports 2013;3(3):747-58.
2012: Pilar Caro; Bjoern Chapuy; Linfeng Chen; Scott B Ficarro; John Gounarides; Michael Green; Amar U Kishan; Jarrod A Marto; Stefano Monti; Erik Norberg; Klaudia Polak; Margaret A Shipp; Illana A Stanley; Daniel Tondera; Hong Yin; Feng Zhou; Nika N Danial
Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma.
Cancer cell 2012;22(4):547-60.
2012: Timothy W Sikorski; Manor Askenazi; Stephen Buratowski; Scott B Ficarro; Yoo Jin Joo; Jarrod A Marto
Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters.
The Journal of biological chemistry 2012;287(42):35397-408.
2012: Feng Zhou; James T Webber; Scott B Ficarro; Yu Lu; Jarrod A Marto
Nanoflow low pressure high peak capacity single dimension LC-MS/MS platform for high-throughput, in-depth analysis of mammalian proteomes.
Analytical chemistry 2012;84(11):5133-9.
2012: Rositsa I Koleva; C John Luckey; Guido Marcucci; John A Alberta; Marlene J Carrasco-Alfonso; Scott B Ficarro; Hanna S Radomska; Daniel G Tenen; James T Webber; Jarrod A Marto
C/EBPα and DEK coordinately regulate myeloid differentiation.
Blood 2012;119(21):4878-88.
2012: Job D Cardoza; Scott B Ficarro; Jignesh R Parikh; Jarrod A Marto
Mass spectrometry-based proteomics: qualitative identification to activity-based protein profiling.
Wiley interdisciplinary reviews. Systems biology and medicine 2012;4(2):141-62.
2012: Tinghu Zhang; Dario R Alessi; Scott B Ficarro; Francisco Inesta-Vaquera; NamDoo Kim; John D Laughlin; Philip V LoGrasso; Thomas Machleidt; Jarrod A Marto; Mario Niepel; Tyzoon K Nomanbhoy; HaJeung Park; Matthew P Patricelli; Taebo Sim; Peter K Sorger; Ting Xie; Jianming Zhang; Nathanael S Gray
Discovery of potent and selective covalent inhibitors of JNK.
Chemistry & biology 2012;19(1):140-54.
2011: Timothy W Sikorski; Scott B Ficarro; John Holik; Taesoo Kim; Jarrod A Marto; Oliver J Rando; Stephen Buratowski
Sub1 and RPA associate with RNA polymerase II at different stages of transcription.
Molecular cell 2011;44(3):397-409.
2011: Scott B Ficarro; Brijesh Garg; C John Luckey; G Adelmant; Marlene J Carrasco-Alfonso; James T Webber; Yi Zhang; Jarrod A Marto
Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis.
Molecular & cellular proteomics : MCP 2011;10(11):O111.011064.
2011: Feng Zhou; Scott B Ficarro; Timothy W Sikorski; James T Webber; Jarrod A Marto
Online nanoflow reversed phase-strong anion exchange-reversed phase liquid chromatography-tandem mass spectrometry platform for efficient and in-depth proteome sequence analysis of complex organisms.
Analytical chemistry 2011;83(18):6996-7005.
2011: Daqi Tu; Yiqun Li; Hyun Kyu Song; Angela V Toms; Christopher J Gould; Scott B Ficarro; Jarrod A Marto; Bruce L Goode; Michael J Eck
Crystal structure of a coiled-coil domain from human ROCK I.
PloS one 2011;6(3):e18080.
2010: Feng Zhou; Job D Cardoza; Scott B Ficarro; Guillaume O Adelmant; Jean-Bernard Lazaro; Jarrod A Marto
Online nanoflow RP-RP-MS reveals dynamics of multicomponent Ku complex in response to DNA damage.
Journal of proteome research 2010;9(12):6242-55.
2010: Vicki Gordon; Shriti Bhadel; Winfried Wunderlich; JoAnn Zhang; Scott B Ficarro; Sahana A Mollah; Jeffrey Shabanowitz; Donald F Hunt; Ioannis Xenarios; William C Hahn; Mark Conaway; Michael F Carey; Daniel Gioeli
CDK9 regulates AR promoter selectivity and cell growth through serine 81 phosphorylation.
Molecular endocrinology (Baltimore, Md.) 2010;24(12):2267-80.
2010: Wenjun Zhou; Wooyoung Hur; Ultan McDermott; Amit Dutt; Wa Xian; Scott B Ficarro; Jianming Zhang; Sreenath V Sharma; Joan Brugge; Matthew Meyerson; Jeffrey Settleman; Nathanael S Gray
A structure-guided approach to creating covalent FGFR inhibitors.
Chemistry & biology 2010;17(3):285-95.
2009: Laurence M Brill; Wen Xiong; KiBum Lee; Scott B Ficarro; Andrew Crain; Yue Xu; Alexey V Terskikh; Evan Y Snyder; Sheng Ding
Phosphoproteomic analysis of human embryonic stem cells.
Cell stem cell 2009;5(2):204-13.
2009: Heather E Murrey; Scott B Ficarro; Chithra Krishnamurthy; Steven E Domino; Eric C Peters; Linda C Hsieh-Wilson
Identification of the plasticity-relevant fucose-alpha(1-2)-galactose proteome from the mouse olfactory bulb.
Biochemistry 2009;48(30):7261-70.
2009: Yi Zhang; Scott B Ficarro; Shaojuan Li; Jarrod A Marto
Optimized Orbitrap HCD for quantitative analysis of phosphopeptides.
Journal of the American Society for Mass Spectrometry 2009;20(8):1425-34.
2009: Scott B Ficarro; Guillaume Adelmant; Maria N Tomar; Yi Zhang; Vincent J Cheng; Jarrod A Marto
Magnetic bead processor for rapid evaluation and optimization of parameters for phosphopeptide enrichment.
Analytical chemistry 2009;81(11):4566-75.
2009: Scott B Ficarro; Yi Zhang; Yu Lu; Ahmadali R Moghimi; Manor Askenazi; Elzbieta Hyatt; Eric D Smith; Leah Boyer; Thorsten M Schlaeger; C John Luckey; Jarrod A Marto
Improved electrospray ionization efficiency compensates for diminished chromatographic resolution and enables proteomics analysis of tyrosine signaling in embryonic stem cells.
Analytical chemistry 2009;81(9):3440-7.
2009: Jignesh R Parikh; Manor Askenazi; Scott B Ficarro; Tanya Cashorali; James T Webber; Nathaniel C Blank; Yi Zhang; Jarrod A Marto
multiplierz: an extensible API based desktop environment for proteomics data analysis.
BMC bioinformatics 2009;10():364.
2008: Scott B Ficarro; Jignesh R Parikh; Nathaniel C Blank; Jarrod A Marto
Niobium(V) oxide (Nb2O5): application to phosphoproteomics.
Analytical chemistry 2008;80(12):4606-13.
2008: Silvia Ortega-Gutiérrez; Donmienne Leung; Scott B Ficarro; Eric C Peters; Benjamin F Cravatt
Targeted disruption of the PME-1 gene causes loss of demethylated PP2A and perinatal lethality in mice.
PloS one 2008;3(7):e2486.
2007: Genaro Pimienta; Scott B Ficarro; Gustavo J Gutierrez; Anindita Bhoumik; Eric C Peters; Ze'ev Ronai; Jaime Pascual
Autophosphorylation properties of inactive and active JNK2.
Cell cycle (Georgetown, Tex.) 2007;6(14):1762-71.
2007: Nelly Khidekel; Scott B Ficarro; Peter M Clark; Marian C. Bryan; Danielle L Swaney; Jessica E Rexach; Yi E Sun; Joshua J Coon; Eric C Peters; Linda C Hsieh-Wilson
Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.
Nature chemical biology 2007;3(6):339-48.
2007: C Huie Lin; Mark D Platt; Scott B Ficarro; Mark H Hoofnagle; Jeffrey Shabanowitz; Lucio Comai; Donald F Hunt; Gary K Owens
Mass spectrometric identification of phosphorylation sites of rRNA transcription factor upstream binding factor.
American journal of physiology. Cell physiology 2007;292(5):C1617-24.
2006: Mridul Mukherji; Laurence M Brill; Scott B Ficarro; Garret M Hampton; Peter G Schultz
A phosphoproteomic analysis of the ErbB2 receptor tyrosine kinase signaling pathways.
Biochemistry 2006;45(51):15529-40.
2006: Toshiya Tsuji; Scott B Ficarro; Wei Jiang
Essential role of phosphorylation of MCM2 by Cdc7/Dbf4 in the initiation of DNA replication in mammalian cells.
Molecular biology of the cell 2006;17(10):4459-72.
2005: Scott M Brittain; Scott B Ficarro; Ansgar Brock; Eric C Peters
Enrichment and analysis of peptide subsets using fluorous affinity tags and mass spectrometry.
Nature biotechnology 2005;23(4):463-8.
2005: Frank Angenstein; Anne M Evans; Shuo-Chien Ling; Robert E Settlage; Scott B Ficarro; Franklin A Carrero-Martinez; Jeffrey Shabanowitz; Donald F Hunt; William T Greenough
Proteomic characterization of messenger ribonucleoprotein complexes bound to nontranslated or translated poly(A) mRNAs in the rat cerebral cortex.
The Journal of biological chemistry 2005;280(8):6496-503.
2005: Icksoo Lee; Arthur R Salomon; Scott B Ficarro; Isabella Mathes; Friedrich Lottspeich; Lawrence I Grossman; Maik Huttemann
cAMP-dependent tyrosine phosphorylation of subunit I inhibits cytochrome c oxidase activity.
The Journal of biological chemistry 2005;280(7):6094-100.
2005: Scott B Ficarro; Arthur R Salomon; Laurence M Brill; Daniel Mason; Michelle Stettler-Gill; Ansgar Brock; Eric C Peters
Automated immobilized metal affinity chromatography/nano-liquid chromatography/electrospray ionization mass spectrometry platform for profiling protein phosphorylation sites.
Rapid communications in mass spectrometry : RCM 2005;19(1):57-71.
2004: Nelly Khidekel; Scott B Ficarro; Eric C Peters; Linda C Hsieh-Wilson
Exploring the O-GlcNAc proteome: direct identification of O-GlcNAc-modified proteins from the brain.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(36):13132-7.
2004: Hwan-Ching Tai; Nelly Khidekel; Scott B Ficarro; Eric C Peters; Linda C Hsieh-Wilson
Parallel identification of O-GlcNAc-modified proteins from cell lysates.
Journal of the American Chemical Society 2004;126(34):10500-1.
2004: Laurence M Brill; Arthur R Salomon; Scott B Ficarro; Mridul Mukherji; Michelle Stettler-Gill; Eric C Peters
Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry.
Analytical chemistry 2004;76(10):2763-72.
2004: Eric C Peters; Ansgar Brock; Scott B Ficarro
Exploring the phosphoproteome with mass spectrometry.
Mini reviews in medicinal chemistry 2004;4(3):313-24.
2003: Christer Ericson; Qui T Phung; David M Horn; Eric C Peters; Jonathan R Fitchett; Scott B Ficarro; Arthur R Salomon; Laurence M Brill; Ansgar Brock
An automated noncontact deposition interface for liquid chromatography matrix-assisted laser desorption/ionization mass spectrometry.
Analytical chemistry 2003;75(10):2309-15.
2003: Scott B Ficarro; Olga Chertihin; V Anne Westbrook; Forest White; Friederike L Jayes; Petr Kalab; Jarrod A Marto; Jeffrey Shabanowitz; John C Herr; Donald F Hunt; Pablo E Visconti
Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation.
The Journal of biological chemistry 2003;278(13):11579-89.
2003: Arthur R Salomon; Scott B Ficarro; Laurence M Brill; Achim Brinker; Qui T Phung; Christer Ericson; Karsten Sauer; Ansgar Brock; David M Horn; Peter G Schultz; Eric C Peters
Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(2):443-8.
2002: Aravinda Thatte; Scott B Ficarro; Karen R. Snapp; Martin K Wild; Dietmar Vestweber; Donald F Hunt; Klaus Ley
Binding of function-blocking mAbs to mouse and human P-selectin glycoprotein ligand-1 peptides with and without tyrosine sulfation.
Journal of leukocyte biology 2002;72(3):470-7.
2002: Nicolas Winssinger; Scott B Ficarro; Peter G Schultz; Jennifer L Harris
Profiling protein function with small molecule microarrays.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(17):11139-44.
2002: Daniel Gioeli; Scott B Ficarro; Jesse J Kwiek; David Aaronson; Mathew Hancock; Andrew D Catling; Forest M White; Robert E Christian; Robert E Settlage; Jeffrey Shabanowitz; Donald F Hunt; Michael J Weber
Androgen receptor phosphorylation. Regulation and identification of the phosphorylation sites.
The Journal of biological chemistry 2002;277(32):29304-14.
2002: Scott B Ficarro; Mark L McCleland; P Todd Stukenberg; Daniel J Burke; Mark M Ross; Jeffrey Shabanowitz; Donald F Hunt; Forest M White
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae.
Nature biotechnology 2002;20(3):301-5.
2000: Angela L Zarling; Scott B Ficarro; Forest M White; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Phosphorylated peptides are naturally processed and presented by major histocompatibility complex class I molecules in vivo.
The Journal of experimental medicine 2000;192(12):1755-62.