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Noah Fierer

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Soil Microbiology

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TOP 3
Scott T Bates; Jose C Clemente; Gilberto E Flores; Rob Knight; Laura Wegener Parfrey; William Anthony Walters; Noah Fierer
Global biogeography of highly diverse protistan communities in soil.
Gilberto E Flores; Rob Knight; Christian L Lauber; Jonathan W Leff; Scott T Bates; J Gregory Caporaso; Noah Fierer
Diversity, distribution and sources of bacteria in residential kitchens.
Ryan Thomas Jones; Leticia Gonzales Sanchez; Noah Fierer
A cross-taxon analysis of insect-associated bacterial diversity.

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All Publications

2013: Scott T Bates; Jose C Clemente; Gilberto E Flores; Rob Knight; Laura Wegener Parfrey; William Anthony Walters; Noah Fierer
Global biogeography of highly diverse protistan communities in soil.
The ISME journal 2013;7(3):652-9.
2013: Gilberto E Flores; Rob Knight; Christian L Lauber; Jonathan W Leff; Scott T Bates; J Gregory Caporaso; Noah Fierer
Diversity, distribution and sources of bacteria in residential kitchens.
Environmental microbiology 2013;15(2):588-96.
2013: Ryan Thomas Jones; Leticia Gonzales Sanchez; Noah Fierer
A cross-taxon analysis of insect-associated bacterial diversity.
PloS one 2013;8(4):e61218.
2013: Se Jin Song; Dan Knights; Christian Lauber; Catherine Lozupone; Sara Nakielny; Donna Berg-Lyons; J Gregory Caporaso; Jose C Clemente; Elizabeth K Costello; Noah Fierer; Jeffrey I Gordon; Gregory Humphrey; Rob Knight
Cohabiting family members share microbiota with one another and with their dogs.
eLife 2013;2():e00458.
2013: Jonathan W Leff; Noah Fierer
Bacterial communities associated with the surfaces of fresh fruits and vegetables.
PloS one 2013;8(3):e59310.
2013: Krista L McGuire; Giulia Orazi; Matthew I Palmer; Sara G Payne; Ramya Rangamannar; Seren M Gedallovich; Caitlyn M Gillikin; Dominique Keefe; Su Jin Kim; Jennifer A Koshner; Jonathan W Leff; Audrey L Massmann; Julia Discenza; Adam Essene; Noah Fierer
Digging the New York City Skyline: soil fungal communities in green roofs and city parks.
PloS one 2013;8(3):e58020.
2012: Noah Fierer; Jack A Gilbert; Christian L Lauber; Jonathan W Leff; Uffe N Nielsen; Sarah Owens; Diana H Wall; Byron J Adams; Scott Thomas Bates; J Gregory Caporaso
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(52):21390-5.
2012: Ashley Shade; Emily H Stanley; Jesse Stombaugh; Rachel J Whitaker; Chin H Wu; Nicholas D Youngblut; Noah Fierer; Rob Knight; Timothy K Kratz; Noah R Lottig; Jordan S Read; Eric E Roden; Katherine D McMahon
Lake microbial communities are resilient after a whole-ecosystem disturbance.
The ISME journal 2012;6(12):2153-67.
2012: Maria C Portillo; Suzanne P Anderson; Noah Fierer
Temporal variability in the diversity and composition of stream bacterioplankton communities.
Environmental microbiology 2012;14(9):2417-28.
2012: J Gregory Caporaso; Noah Fierer; Louise Fraser; Jack A Gilbert; Niall Gormley; James Huntley; Christian L Lauber; Sarah M Owens; Geoff Smith; William A Walters; Markus Bauer; Donna Berg-Lyons; Jason Betley; Rob Knight
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.
The ISME journal 2012;6(8):1621-4.
2012: Rob Knight; George A Kowalchuk; Folker Meyer; Rick Stevens; Daniel van der Lelie; Mark J Bailey; Narayan Desai; Dawn Field; Noah Fierer; Jed A Fuhrman; Jeffrey I Gordon; Phil Hugenholtz; Janet Jansson; Jack A Gilbert
Unlocking the potential of metagenomics through replicated experimental design.
Nature biotechnology 2012;30(6):513-20.
2012: Noah Fierer; Joshua Ladau
Predicting microbial distributions in space and time.
Nature methods 2012;9(6):549-51.
2012: Noah Fierer; Christian L Lauber; Kelly S Ramirez; Jesse Zaneveld; Mark A Bradford; Rob Knight
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients.
The ISME journal 2012;6(5):1007-17.
2012: Valerie J McKenzie; Robert M Bowers; Noah Fierer; Rob Knight; Christian L Lauber
Co-habiting amphibian species harbor unique skin bacterial communities in wild populations.
The ISME journal 2012;6(3):588-96.
2012: Antonio Gonzalez; Christian L Lauber; Jesse Stombaugh; Noah Fierer; Rob Knight
SitePainter: a tool for exploring biogeographical patterns.
Bioinformatics (Oxford, England) 2012;28(3):436-8.
2012: Albert Barberán; Scott T Bates; Emilio O Casamayor; Noah Fierer
Using network analysis to explore co-occurrence patterns in soil microbial communities.
The ISME journal 2012;6(2):343-51.
2012: Jiri Hulcr; Andrew M Latimer; Margaret D Lowman; Andrea Lucky; Nina R Rountree; Noah Fierer; Jessica B Henley; Robert R Dunn
A jungle in there: bacteria in belly buttons are highly diverse, but predictable.
PloS one 2012;7(11):e47712.
2012: Gilberto E Flores; Jessica B Henley; Noah Fierer
A direct PCR approach to accelerate analyses of human-associated microbial communities.
PloS one 2012;7(9):e44563.
2011: Ryan T Jones; April M Greenwell; Alberto Bressan; Noah Fierer
Bacterial communities of two parthenogenetic aphid species cocolonizing two host plants across the Hawaiian Islands.
Applied and environmental microbiology 2011;77(23):8345-9.
2011: Robert M Bowers; Jeff L Collett; Elizabeth K Costello; Rob Knight; Amy P Sullivan; Noah Fierer
Sources of bacteria in outdoor air across cities in the midwestern United States.
Applied and environmental microbiology 2011;77(18):6350-6.
2011: Scott T Bates; Donna Berg-Lyons; J Gregory Caporaso; William A Walters; Rob Knight; Noah Fierer
Examining the global distribution of dominant archaeal populations in soil.
The ISME journal 2011;5(5):908-17.
2011: William A Walters; J Gregory Caporaso; Christian L Lauber; Donna Berg-Lyons; Noah Fierer; Rob Knight
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.
Bioinformatics (Oxford, England) 2011;27(8):1159-61.
2011: Noah Fierer; Christy M McCain; Patrick Meir; Joshua M Rapp; Miles R Silman; Michael Zimmermann; Rob Knight
Microbes do not follow the elevational diversity patterns of plants and animals.
Ecology 2011;92(4):797-804.
2011: Robert M Bowers; Shawna McLetchie; Rob Knight; Noah Fierer
Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments.
The ISME journal 2011;5(4):601-12.
2011: J Gregory Caporaso; Christian L Lauber; William A Walters; Donna Berg-Lyons; Catherine Lozupone; Peter J Turnbaugh; Noah Fierer; Rob Knight
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.
Proceedings of the National Academy of Sciences of the United States of America 2011;108 Suppl 1():4516-22.
2011: Noah Fierer; Jay T Lennon
The generation and maintenance of diversity in microbial communities.
American journal of botany 2011;98(3):439-48.
2011: Scott T Bates; Garrett W G Cropsey; J Gregory Caporaso; Rob Knight; Noah Fierer
Bacterial communities associated with the lichen symbiosis.
Applied and environmental microbiology 2011;77(4):1309-14.
2011: Gilberto E Flores; Rob Knight; Dan Knights; Christian L Lauber; Jesse Stombaugh; Scott T Bates; Noah Fierer
Microbial biogeography of public restroom surfaces.
PloS one 2011;6(11):e28132.
2011: J Gregory Caporaso; Elizabeth K Costello; Noah Fierer; Pawel Gajer; Antonio Gonzalez; Jeffrey I Gordon; Dan Knights; Christian L Lauber; Jacques Ravel; Jesse Stombaugh; Donna Berg-Lyons; Rob Knight
Moving pictures of the human microbiome.
Genome biology 2011;12(5):R50.
2011: Diana R Nemergut; Elizabeth K Costello; Micah Hamady; Catherine Lozupone; Lin Jiang; Steven K Schmidt; Noah Fierer; Alan R Townsend; Cory C Cleveland; Lee Stanish; Rob Knight
Global patterns in the biogeography of bacterial taxa.
Environmental microbiology 2011;13(1):135-44.
2010: Kelly S Ramirez; Christian L Lauber; Rob Knight; Mark A Bradford; Noah Fierer
Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems.
Ecology 2010;91(12):3463-70; discussion 3503-14.
2010: Haiyan Chu; Noah Fierer; Christian L Lauber; J G Caporaso; Rob Knight; Paul Grogan
Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes.
Environmental microbiology 2010;12(11):2998-3006.
2010: Amanda J Redford; Robert M Bowers; Rob Knight; Yan Linhart; Noah Fierer
The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves.
Environmental microbiology 2010;12(11):2885-93.
2010: Justin Kuczynski; Zongzhi Liu; Catherine Lozupone; Daniel McDonald; Noah Fierer; Rob Knight
Microbial community resemblance methods differ in their ability to detect biologically relevant patterns.
Nature methods 2010;7(10):813-9.
2010: Noah Fierer; Diana Nemergut; Rob Knight; Joseph M Craine
Changes through time: integrating microorganisms into the study of succession.
Research in microbiology 2010;161(8):635-42.
2010: Johannes Rousk; Erland Bååth; Philip C Brookes; Christian L Lauber; Catherine Lozupone; J Gregory Caporaso; Rob Knight; Noah Fierer
Soil bacterial and fungal communities across a pH gradient in an arable soil.
The ISME journal 2010;4(10):1340-51.
2010: Kirsten S Hofmockel; Noah Fierer; Benjamin P Colman; Robert B Jackson
Amino acid abundance and proteolytic potential in North American soils.
Oecologia 2010;163(4):1069-78.
2010: Christian L Lauber; Nicholas Zhou; Jeffrey I Gordon; Rob Knight; Noah Fierer
Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples.
FEMS microbiology letters 2010;307(1):80-6.
2010: Noah Fierer; Christian L Lauber; Nick Zhou; Daniel McDonald; Elizabeth K Costello; Rob Knight
Forensic identification using skin bacterial communities.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(14):6477-81.
2010: Justin Kuczynski; Elizabeth K Costello; Diana R Nemergut; Jesse Zaneveld; Christian L Lauber; Dan Knights; Omry Koren; Noah Fierer; Scott T Kelley; Ruth E Ley; Jeffrey I Gordon; Rob Knight
Direct sequencing of the human microbiome readily reveals community differences.
Genome biology 2010;11(5):210.
2009: Elizabeth K Costello; Christian L Lauber; Micah Hamady; Noah Fierer; Jeffrey I Gordon; Rob Knight
Bacterial community variation in human body habitats across space and time.
Science (New York, N.Y.) 2009;326(5960):1694-7.
2009: Noah Fierer; Michael S Strickland; Daniel Liptzin; Mark A Bradford; Cory C Cleveland
Global patterns in belowground communities.
Ecology letters 2009;12(11):1238-49.
2009: Christian L Lauber; Micah Hamady; Rob Knight; Noah Fierer
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale.
Applied and environmental microbiology 2009;75(15):5111-20.
2009: Robert M Bowers; Christian L Lauber; Christine Wiedinmyer; Micah Hamady; Anna G Hallar; Ray Fall; Rob Knight; Noah Fierer
Characterization of airborne microbial communities at a high-elevation site and their potential to act as atmospheric ice nuclei.
Applied and environmental microbiology 2009;75(15):5121-30.
2009: Noah Fierer; Karen M Carney; M Claire Horner-Devine; J Patrick Megonigal
The biogeography of ammonia-oxidizing bacterial communities in soil.
Microbial ecology 2009;58(2):435-45.
2009: Amanda J Redford; Noah Fierer
Bacterial succession on the leaf surface: a novel system for studying successional dynamics.
Microbial ecology 2009;58(1):189-98.
2009: Ryan T Jones; Michael S Robeson; Christian L Lauber; Micah Hamady; Rob Knight; Noah Fierer
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses.
The ISME journal 2009;3(4):442-53.
2008: Noah Fierer; Micah Hamady; Christian L Lauber; Rob Knight
The influence of sex, handedness, and washing on the diversity of hand surface bacteria.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(46):17994-9.
2008: Diana R Nemergut; Alan R Townsend; Sarah R Sattin; Kristen R Freeman; Noah Fierer; Jason C Neff; William D Bowman; Christopher Schadt; Michael N Weintraub; Steven K Schmidt
The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling.
Environmental microbiology 2008;10(11):3093-105.
2008: Noah Fierer; Zongzhi Liu; Mari Rodríguez-Hernández; Rob Knight; Matthew Henn; Mark T Hernandez
Short-term temporal variability in airborne bacterial and fungal populations.
Applied and environmental microbiology 2008;74(1):200-7.
2007: Noah Fierer; Mya Breitbart; James Nulton; Peter Salamon; Catherine Lozupone; Ryan Jones; Michael Robeson; Robert A Edwards; Ben Felts; Steve Rayhawk; Rob Knight; Forest Rohwer; Robert B Jackson
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.
Applied and environmental microbiology 2007;73(21):7059-66.
2007: Noah Fierer; Jennifer L Morse; Sean T Berthrong; Emily S Bernhardt; Robert B Jackson
Environmental controls on the landscape-scale biogeography of stream bacterial communities.
Ecology 2007;88(9):2162-73.
2007: Noah Fierer; Mark A Bradford; Robert B Jackson
Toward an ecological classification of soil bacteria.
Ecology 2007;88(6):1354-64.
2006: Noah Fierer; Robert B Jackson
The diversity and biogeography of soil bacterial communities.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(3):626-31.
2005: Noah Fierer; Jason A Jackson; Rytas Vilgalys; Robert B Jackson
Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays.
Applied and environmental microbiology 2005;71(7):4117-20.