FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Aseem Ansari

Research Profile

Chemicals & Drugs

Living Beings

Saccharomyces cerevisiae

Physiology

Concepts & Ideas

Co-author Network

Publications

TOP 3
Sue Mei Tan-Wong; Zhenyu Xu; Judith B Zaugg; David W Zhang; Aseem Z Ansari; Jurgi Camblong; Nicholas M Luscombe; Hannah E Mischo; Lars M Steinmetz; Nick J Proudfoot
Gene loops enhance transcriptional directionality.
Zachary T Campbell; Elena Menichelli; Jose A Rodriguez-Martinez; Cary T Valley; Aseem Z Ansari; Devesh Bhimsaria; James R Williamson; Marvin Wickens
Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity.
Karen Chinchilla; Jonathan S Finkel; Juan B Rodriguez-Molina; Doris Ursic; Aseem Z Ansari; Michael R Culbertson
Interactions of Sen1, Nrd1, and Nab3 with multiple phosphorylated forms of the Rpb1 C-terminal domain in Saccharomyces cerevisiae.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Aseem Ansari (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2012: Sue Mei Tan-Wong; Zhenyu Xu; Judith B Zaugg; David W Zhang; Aseem Z Ansari; Jurgi Camblong; Nicholas M Luscombe; Hannah E Mischo; Lars M Steinmetz; Nick J Proudfoot
Gene loops enhance transcriptional directionality.
Science (New York, N.Y.) 2012;338(6107):671-5.
2012: Zachary T Campbell; Elena Menichelli; Jose A Rodriguez-Martinez; Cary T Valley; Aseem Z Ansari; Devesh Bhimsaria; James R Williamson; Marvin Wickens
Cooperativity in RNA-protein interactions: global analysis of RNA binding specificity.
Cell reports 2012;1(5):570-81.
2012: Karen Chinchilla; Jonathan S Finkel; Juan B Rodriguez-Molina; Doris Ursic; Aseem Z Ansari; Michael R Culbertson
Interactions of Sen1, Nrd1, and Nab3 with multiple phosphorylated forms of the Rpb1 C-terminal domain in Saccharomyces cerevisiae.
Eukaryotic cell 2012;11(4):417-29.
2012: David W Zhang; Amber L Mosley; Sreenivasa R Ramisetty; Juan B Rodríguez-Molina; Michael P Washburn; Aseem Z Ansari
Ssu72 phosphatase-dependent erasure of phospho-Ser7 marks on the RNA polymerase II C-terminal domain is essential for viability and transcription termination.
The Journal of biological chemistry 2012;287(11):8541-51.
2012: David W Zhang; Corey M Nemec; Juan B Rodríguez-Molina; Joshua R Tietjen; Aseem Z Ansari
Emerging Views on the CTD Code.
Genetics research international 2012;2012():347214.
2011: Aseem Z Ansari; Marsha Rich Rosner; Julius Adler
Har Gobind Khorana 1922-2011.
Cell 2011;147(7):1433-5.
2011: Sarah E Davis; Rachel A Mooney; Elenita I Kanin; Jeff Grass; Robert Landick; Aseem Z Ansari
Mapping E. coli RNA polymerase and associated transcription factors and identifying promoters genome-wide.
Methods in enzymology 2011;498():449-71.
2011: Joshua R Tietjen; Leslie J Donato; Devesh Bhimisaria; Aseem Z Ansari
Sequence-specificity and energy landscapes of DNA-binding molecules.
Methods in enzymology 2011;497():3-30.
2010: José A Rodríguez-Martínez; Kimberly J Peterson-Kaufman; Aseem Z Ansari
Small-molecule regulators that mimic transcription factors.
Biochimica et biophysica acta 2010;1799(10-12):768-74.
2010: Kimberly J Peterson-Kaufman; Clayton D Carlson; José A Rodríguez-Martínez; Aseem Z Ansari
Nucleating the assembly of macromolecular complexes.
Chembiochem : a European journal of chemical biology 2010;11(14):1955-62.
2010: Joshua R Tietjen; David W Zhang; Juan B Rodríguez-Molina; Brent E White; Md Sohail Akhtar; Martin Heidemann; Xin Li; Rob D Chapman; Kevan M Shokat; Sündüz Keles; Dirk Eick; Aseem Z Ansari
Chemical-genomic dissection of the CTD code.
Nature structural & molecular biology 2010;17(9):1154-61.
2010: Philipp Müller; Sookhee Park; Erika Shor; Dana J Huebert; Christopher L Warren; Aseem Z Ansari; Michael Weinreich; Matthew L Eaton; David M MacAlpine; Catherine A Fox
The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.
Genes & development 2010;24(13):1418-33.
2010: Clayton D Carlson; Christopher L Warren; Karl E Hauschild; Mary S Ozers; Naveeda Qadir; Devesh Bhimsaria; Youngsook Lee; Franco Cerrina; Aseem Z Ansari
Specificity landscapes of DNA binding molecules elucidate biological function.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(10):4544-9.
2009: Erika Shor; Christopher L Warren; Joshua Tietjen; Zhonggang Hou; Ulrika Müller; Ilaria Alborelli; Florence H Gohard; Adrian I Yemm; Lev Borisov; James R Broach; Michael Weinreich; Conrad Nieduszynski; Aseem Z Ansari; Catherine A Fox
The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication.
PLoS genetics 2009;5(12):e1000755.
2009: Paramjit S Arora; Aseem Z Ansari
Chemical biology: A Notch above other inhibitors.
Nature 2009;462(7270):171-3.
2009: Karl E Hauschild; James S Stover; Dale L Boger; Aseem Z Ansari
CSI-FID: high throughput label-free detection of DNA binding molecules.
Bioorganic & medicinal chemistry letters 2009;19(14):3779-82.
2009: Brynne C Stanton; Steven S Giles; Emilia K Kruzel; Christopher L Warren; Aseem Z Ansari; Christina M Hull
Cognate Site Identifier analysis reveals novel binding properties of the Sex Inducer homeodomain proteins of Cryptococcus neoformans.
Molecular microbiology 2009;72(6):1334-47.
2009: Md Sohail Akhtar; Martin Heidemann; Joshua R Tietjen; David W Zhang; Rob D Chapman; Dirk Eick; Aseem Z Ansari
TFIIH kinase places bivalent marks on the carboxy-terminal domain of RNA polymerase II.
Molecular cell 2009;34(3):387-93.
2009: Rachel A Mooney; Sarah E Davis; Jason M Peters; Jennifer L Rowland; Aseem Z Ansari; Robert Landick
Regulator trafficking on bacterial transcription units in vivo.
Molecular cell 2009;33(1):97-108.
2009: Mary S Ozers; Christopher L Warren; Aseem Z Ansari
Determining DNA sequence specificity of natural and artificial transcription factors by cognate site identifier analysis.
Methods in molecular biology (Clifton, N.J.) 2009;544():637-53.
2009: Aseem Z Ansari
Riboactivators: transcription activation by noncoding RNA.
Critical reviews in biochemistry and molecular biology 2009;44(1):50-61.
2008: Gwenael Badis; Esther T Chan; Harm van Bakel; Lourdes Pena-Castillo; Desiree Tillo; Kyle Tsui; Clayton D Carlson; Andrea J Gossett; Michael J Hasinoff; Christopher L Warren; Marinella Gebbia; Shaheynoor Talukder; Ally Yang; Sanie Mnaimneh; Dimitri Terterov; David Coburn; Ai Li Yeo; Zhen Xuan Yeo; Neil D Clarke; Jason Dillon Lieb; Aseem Z Ansari; Corey Nislow; Timothy R Hughes
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.
Molecular cell 2008;32(6):878-87.
2008: Rocco Moretti; Aseem Z Ansari
Expanding the specificity of DNA targeting by harnessing cooperative assembly.
Biochimie 2008;90(7):1015-25.
2008: Sündüz Keleş; Christopher L Warren; Clayton D Carlson; Aseem Z Ansari
CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data.
Nucleic acids research 2008;36(10):3171-84.
2008: Rocco Moretti; Leslie Donato; Mary L Brezinski; Ryan L Stafford; Helena Hoff; Jon S Thorson; Peter B Dervan; Aseem Z Ansari
Targeted chemical wedges reveal the role of allosteric DNA modulation in protein-DNA assembly.
ACS chemical biology 2008;3(4):220-9.
2007: James W Puckett; Katy A Muzikar; Josh Tietjen; Christopher L Warren; Aseem Z Ansari; Peter B Dervan
Quantitative microarray profiling of DNA-binding molecules.
Journal of the American Chemical Society 2007;129(40):12310-9.
2007: Elenita I Kanin; Ryan T Kipp; Charles Kung; Matthew Slattery; Agnes Viale; Steven Hahn; Kevan M Shokat; Aseem Z Ansari
Chemical inhibition of the TFIIH-associated kinase Cdk7/Kin28 does not impair global mRNA synthesis.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(14):5812-7.
2007: Ryan L Stafford; Hans-Dieter Arndt; Mary L Brezinski; Aseem Z Ansari; Peter B Dervan
Minimization of a protein-DNA dimerizer.
Journal of the American Chemical Society 2007;129(9):2660-8.
2007: Anna K Mapp; Aseem Z Ansari
A TAD further: exogenous control of gene activation.
ACS chemical biology 2007;2(1):62-75.
2007: Aseem Z Ansari
Chemical crosshairs on the central dogma.
Nature chemical biology 2007;3(1):2-7.
2006: Eric J Steinmetz; Christopher L Warren; Jason N Kuehner; Bahman Panbehi; Aseem Z Ansari; David A Brow
Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase.
Molecular cell 2006;24(5):735-46.
2006: Jenifer K Lum; Chinmay Y Majmudar; Aseem Z Ansari; Anna K Mapp
Converting inactive peptides into potent transcriptional activators.
ACS chemical biology 2006;1(10):639-43.
2006: Christopher L Warren; Natasha C S Kratochvil; Karl E Hauschild; Shane Foister; Mary L Brezinski; Peter B Dervan; George N Phillips; Aseem Z Ansari
Defining the sequence-recognition profile of DNA-binding molecules.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(4):867-72.
2005: Marni Raffaelle; Elenita I Kanin; Jennifer Vogt; Richard R Burgess; Aseem Z Ansari
Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo.
Molecular cell 2005;20(3):357-66.
2005: Christopher D Herring; Marni Raffaelle; Timothy Allen; Elenita I Kanin; Robert Landick; Aseem Z Ansari; Bernhard Ø Palsson
Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays.
Journal of bacteriology 2005;187(17):6166-74.
2005: Zhen Lu; Steven P Rowe; Brian B Brennan; Sarah E Davis; Renee E Metzler; Johnathan J Nau; Chinmay Y Majmudar; Anna K Mapp; Aseem Z Ansari
Unraveling the mechanism of a potent transcriptional activator.
The Journal of biological chemistry 2005;280(33):29689-98.
2005: Karl E Hauschild; Renee E Metzler; Hans-Dieter Arndt; Rocco Moretti; Marni Raffaelle; Peter B Dervan; Aseem Z Ansari
Temperature-sensitive protein-DNA dimerizers.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(14):5008-13.
2005: Aseem Z Ansari; Anuja Ogirala; Mark Ptashne
Transcriptional activating regions target attached substrates to a cyclin-dependent kinase.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(7):2346-9.
2004: Ying Liu; Charles Kung; James Fishburn; Aseem Z Ansari; Kevan M Shokat; Steven Hahn
Two cyclin-dependent kinases promote RNA polymerase II transcription and formation of the scaffold complex.
Molecular and cellular biology 2004;24(4):1721-35.
2003: Hans-Dieter Arndt; Karl E Hauschild; David P Sullivan; Kara Lake; Peter B Dervan; Aseem Z Ansari
Toward artificial developmental regulators.
Journal of the American Chemical Society 2003;125(44):13322-3.
2003: Aseem Z Ansari
Fingers reach for the genome.
Nature biotechnology 2003;21(3):242-3.
2003: Shamol Saha; Aseem Z Ansari; Kevin A Jarrell; Mark Ptashne; Kevin A Jarell
RNA sequences that work as transcriptional activating regions.
Nucleic acids research 2003;31(5):1565-70.
2002: Aseem Z Ansari; Anna K Mapp
Modular design of artificial transcription factors.
Current opinion in chemical biology 2002;6(6):765-72.
2002: Aseem Z Ansari; Sang Seok Koh; Zafar Zaman; Christine Bongards; Norbert Lehming; Richard A Young; Mark Ptashne
Transcriptional activating regions target a cyclin-dependent kinase.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(23):14706-9.
2002: Paramjit S Arora; Aseem Z Ansari; Timothy P Best; Mark Ptashne; Peter B Dervan
Design of artificial transcriptional activators with rigid poly-L-proline linkers.
Journal of the American Chemical Society 2002;124(44):13067-71.
2002: Zhen Lu; Aseem Z Ansari; Xiangyang Lu; Anuja Ogirala; Mark Ptashne
A target essential for the activity of a nonacidic yeast transcriptional activator.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(13):8591-6.
2001: Aseem Z Ansari; Anna K Mapp; D H Nguyen; Peter B Dervan; Mark Ptashne
Towards a minimal motif for artificial transcriptional activators.
Chemistry & biology 2001;8(6):583-92.
2001: P Hidalgo; Aseem Z Ansari; P Schmidt; BJ Hare; N Simkovich; S Farrell; E J Shin; Mark Ptashne; Gerhard Wagner
Recruitment of the transcriptional machinery through GAL11P: structure and interactions of the GAL4 dimerization domain.
Genes & development 2001;15(8):1007-20.
2001: Zafar Zaman; Aseem Z Ansari; Sang Seok Koh; R Young; Mark Ptashne
Interaction of a transcriptional repressor with the RNA polymerase II holoenzyme plays a crucial role in repression.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2550-4.
2000: Anna K Mapp; Aseem Z Ansari; Mark Ptashne; Peter B Dervan
Activation of gene expression by small molecule transcription factors.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(8):3930-5.
2000: X Lu; Aseem Z Ansari; Mark Ptashne
An artificial transcriptional activating region with unusual properties.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(5):1988-92.
1998: Aseem Z Ansari; R J Reece; Mark Ptashne
A transcriptional activating region with two contrasting modes of protein interaction.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(23):13543-8.
1998: Sang Seok Koh; Aseem Z Ansari; Mark Ptashne; Richard A Young
An activator target in the RNA polymerase II holoenzyme.
Molecular cell 1998;1(6):895-904.
1998: Zafar Zaman; Aseem Z Ansari; L Gaudreau; Julian Nevado; Mark Ptashne
Gene transcription by recruitment.
Cold Spring Harbor symposia on quantitative biology 1998;63():167-71.