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Michael Freeling
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Research Profile (preview)
Living Beings
Genes & Molecular Sequences
Chemicals & Drugs
Physiology
Concepts & Ideas
Procedures
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Network (preview)
14
lisch, damon
5
Thomas, Brian
5
Pedersen, Brent
4
Goff, Stephen
4
Hake, Sarah
3
Schneeberger, R
3
Langdale, Jane
3
Kaplinsky, Nick
2
Ko, Cynthia
2
Tsiantis, Miltos
2
Langham, Richard
2
Osmont, Karen
2
Alam, Maqsudul
1
Brendel, Volker
1
Chandler, Vicki
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All Publications
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2009: Freeling Michael; Subramaniam Shabarinath
Conserved noncoding sequences (CNSs) in higher plants.
Current opinion in plant biology 2009;12(2):126-32.
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2009: Freeling Michael
Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition.
Annual review of plant biology 2009;60():433-53.
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2008: Lyons Eric; Pedersen Brent; Kane Josh; Alam Maqsudul; Ming Ray; Tang Haibao; Wang Xiyin; Bowers John; Paterson Andrew; Lisch Damon; Freeling Michael
Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids.
Plant physiology 2008;148(4):1772-81.
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2008: Freeling Michael; Lyons Eric; Pedersen Brent; Alam Maqsudul; Ming Ray; Lisch Damon
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales.
Genome research 2008;18(12):1924-37.
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2008: Singh Jaswinder; Freeling Michael; Lisch Damon
A position effect on the heritability of epigenetic silencing.
PLoS genetics 2008;4(10):e1000216.
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2008: Lyons Eric; Freeling Michael
How to usefully compare homologous plant genes and chromosomes as DNA sequences.
The Plant journal : for cell and molecular biology 2008;53(4):661-73.
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2007: Freeling Michael; Rapaka Lakshmi; Lyons Eric; Pedersen Brent; Thomas Brian C
G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis.
The Plant cell 2007;19(5):1441-57.
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2007: Thomas Brian C; Rapaka Lakshmi; Lyons Eric; Pedersen Brent; Freeling Michael
Arabidopsis intragenomic conserved noncoding sequence.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(9):3348-53.
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2006: Woodhouse Margaret Roth; Freeling Michael; Lisch Damon
Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors.
PLoS biology 2006;4(10):e339.
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2006: Freeling Michael; Thomas Brian C
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity.
Genome research 2006;16(7):805-14.
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2006: Thomas Brian C; Pedersen Brent; Freeling Michael
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes.
Genome research 2006;16(7):934-46.
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2006: Osmont Karen S; Sadeghian Nasim; Freeling Michael
Mosaic analysis of extended auricle1 (eta1) suggests that a two-way signaling pathway is involved in positioning the blade/sheath boundary in Zea mays.
Developmental biology 2006;295(1):1-12.
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2006: Diao Xianmin; Freeling Michael; Lisch Damon
Horizontal transfer of a plant transposon.
PLoS biology 2006;4(1):e5.
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2006: Woodhouse Margaret Roth; Freeling Michael; Lisch Damon
The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize.
Genetics 2006;172(1):579-92.
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2005: Paterson Andrew H; Freeling Michael; Sasaki Takuji
Grains of knowledge: genomics of model cereals.
Genome research 2005;15(12):1643-50.
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2005: Slotkin R Keith; Freeling Michael; Lisch Damon
Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication.
Nature genetics 2005;37(6):641-4.
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2004: Bauer Petra; Lubkowitz Mark; Tyers Randall; Nemoto Keisuke; Meeley Robert B; Goff Steven A; Freeling Michael
Regulation and a conserved intron sequence of liguleless3/4 knox class-I homeobox genes in grasses.
Planta 2004;219(2):359-68.
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2004: Langham Richard J; Walsh Justine; Dunn Molly; Ko Cynthia; Goff Stephen A; Freeling Michael
Genomic duplication, fractionation and the origin of regulatory novelty.
Genetics 2004;166(2):935-45.
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2003: Osmont Karen S; Jesaitis Lynne A; Freeling Michael
The extended auricle1 (eta1) gene is essential for the genetic network controlling postinitiation maize leaf development.
Genetics 2003;165(3):1507-19.
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2003: Slotkin R Keith; Freeling Michael; Lisch Damon
Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays.
Genetics 2003;165(2):781-97.
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2003: Inada Dan Choffnes; Bashir Ali; Lee Chunghau; Thomas Brian C; Ko Cynthia; Goff Stephen A; Freeling Michael
Conserved noncoding sequences in the grasses.
Genome research 2003;13(9):2030-41.
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2003: Theodoris George; Inada Noriko; Freeling Michael
Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC LEAVES1 function in leaf development.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(11):6837-42.
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2003: Kaplinsky Nicholas J; Freeling Michael
Combinatorial control of meristem identity in maize inflorescences.
Development (Cambridge, England) 2003;130(6):1149-58.
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2003: Dong Qunfeng; Roy Laura; Freeling Michael; Walbot Virginia; Brendel Volker
ZmDB, an integrated database for maize genome research.
Nucleic acids research 2003;31(1):244-7.
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2002: Nelson Jennifer M; Lane Barbara; Freeling Michael
Expression of a mutant maize gene in the ventral leaf epidermis is sufficient to signal a switch of the leaf's dorsoventral axis.
Development (Cambridge, England) 2002;129(19):4581-9.
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2002: Kaplinsky Nicholas J; Braun David M; Penterman Jon; Goff Stephen A; Freeling Michael
Utility and distribution of conserved noncoding sequences in the grasses.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(9):6147-51.
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2002: Kaplinsky Nick; Braun David; Lisch Damon; Hay Angela; Hake Sarah; Freeling Michael
Biodiversity (Communications arising): maize transgene results in Mexico are artefacts.
Nature 2002;416(6881):601-2; discussion 600, 602.
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2001: Lisch D R; Freeling M; Langham R J; Choy M Y
Mutator transposase is widespread in the grasses.
Plant physiology 2001;125(3):1293-303.
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2001: Freeling M
Grasses as a single genetic system: reassessment 2001.
Plant physiology 2001;125(3):1191-7.
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2000: Girard L; Freeling M
Mutator-suppressible alleles of rough sheath1 and liguleless3 in maize reveal multiple mechanisms for suppression.
Genetics 2000;154(1):437-46.
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1999: Walsh J; Freeling M
The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex.
The Plant journal : for cell and molecular biology 1999;19(4):489-95.
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1999: Tsiantis M; Schneeberger R; Golz J F; Freeling M; Langdale J A
The maize rough sheath2 gene and leaf development programs in monocot and dicot plants.
Science (New York, N.Y.) 1999;284(5411):154-6.
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1999: Muehlbauer G J; Fowler J E; Girard L; Tyers R; Harper L; Freeling M
Ectopic expression of the maize homeobox gene liguleless3 alters cell fates in the leaf.
Plant physiology 1999;119(2):651-62.
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1999: Lisch D; Girard L; Donlin M; Freeling M
Functional analysis of deletion derivatives of the maize transposon MuDR delineates roles for the MURA and MURB proteins.
Genetics 1999;151(1):331-41.
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1999: Girard L; Freeling M
Regulatory changes as a consequence of transposon insertion.
Developmental genetics 1999;25(4):291-6.
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1998: Schneeberger R; Tsiantis M; Freeling M; Langdale J A
The rough sheath2 gene negatively regulates homeobox gene expression during maize leaf development.
Development (Cambridge, England) 1998;125(15):2857-65.
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1998: Walsh J; Waters C A; Freeling M
The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the leaf blade-sheath boundary.
Genes & development 1998;12(2):208-18.
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1997: Muehlbauer G J; Fowler J E; Freeling M
Sectors expressing the homeobox gene liguleless3 implicate a time-dependent mechanism for cell fate acquisition along the proximal-distal axis of the maize leaf.
Development (Cambridge, England) 1997;124(24):5097-106.
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1997: Schichnes D; Schneeberger R; Freeling M
Induction of leaves directly from leaves in the maize mutant Lax midrib1-O.
Developmental biology 1997;186(1):36-45.
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1997: Scanlon M J; Freeling M
Clonal sectors reveal that a specific meristematic domain is not utilized in the maize mutant narrow sheath.
Developmental biology 1997;182(1):52-66.
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1996: Harper L; Freeling M
Interactions of liguleless1 and liguleless2 function during ligule induction in maize.
Genetics 1996;144(4):1871-82.
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1996: Scanlon M J; Schneeberger R G; Freeling M
The maize mutant narrow sheath fails to establish leaf margin identity in a meristematic domain.
Development (Cambridge, England) 1996;122(6):1683-91.
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1996: Fowler J E; Muehlbauer G J; Freeling M
Mosaic analysis of the liguleless3 mutant phenotype in maize by coordinate suppression of mutator-insertion alleles.
Genetics 1996;143(1):489-503.
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1996: Fowler J E; Freeling M
Genetic analysis of mutations that alter cell fates in maize leaves: dominant Liguleless mutations.
Developmental genetics 1996;18(3):198-222.
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1995: Donlin M J; Lisch D; Freeling M
Tissue-specific accumulation of MURB, a protein encoded by MuDR, the autonomous regulator of the Mutator transposable element family.
The Plant cell 1995;7(12):1989-2000.
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1995: Schneeberger R G; Becraft P W; Hake S; Freeling M
Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.
Genes & development 1995;9(18):2292-304.
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1995: Lisch D; Chomet P; Freeling M
Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line.
Genetics 1995;139(4):1777-96.
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1995: Kloeckener-Gruissem B; Freeling M
Transposon-induced promoter scrambling: a mechanism for the evolution of new alleles.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(6):1836-40.
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1994: Winkler R G; Freeling M
Analysis of the autonomy of maize dwarf 1 action in genetic mosaics.
The Journal of heredity 1994;85(5):377-80.
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1994: Becraft P W; Freeling M
Genetic analysis of Rough sheath1 developmental mutants of maize.
Genetics 1994;136(1):295-311.
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1993: Vogel J M; Roth B; Cigan M; Freeling M
Expression of the two maize TATA binding protein genes and function of the encoded TBP proteins by complementation in yeast.
The Plant cell 1993;5(11):1627-38.
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1993: Dawe R K; Lachmansingh A R; Freeling M
Transposon-mediated mutations in the untranslated leader of maize Adh1 that increase and decrease pollen-specific gene expression.
The Plant cell 1993;5(3):311-9.
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1993: Sinha N; Hake S; Freeling M
Genetic and molecular analysis of leaf development.
Current topics in developmental biology 1993;28():47-80.
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1992: Dawe R K; Freeling M
The role of initial cells in maize anther morphogenesis.
Development (Cambridge, England) 1992;116(4):1077-85.
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1992: Freeling M
A conceptual framework for maize leaf development.
Developmental biology 1992;153(1):44-58.
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1992: Becraft P W; Freeling M
Cell interactions in plants.
Current opinion in genetics & development 1992;2(4):571-5.
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1992: Kloeckener-Gruissem B; Vogel J M; Freeling M
The TATA box promoter region of maize Adh1 affects its organ-specific expression.
The EMBO journal 1992;11(1):157-66.
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1991: Chomet P; Lisch D; Hardeman K J; Chandler V L; Freeling M
Identification of a regulatory transposon that controls the Mutator transposable element system in maize.
Genetics 1991;129(1):261-70.
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1991: Becraft P W; Freeling M
Sectors of liguleless-1 tissue interrupt an inductive signal during maize leaf development.
The Plant cell 1991;3(8):801-7.
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1990: Dawe R K; Freeling M
Clonal analysis of the cell lineages in the male flower of maize.
Developmental biology 1990;142(1):233-45.
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1990: Sylvester A W; Cande W Z; Freeling M
Division and differentiation during normal and liguleless-1 maize leaf development.
Development (Cambridge, England) 1990;110(3):985-1000.
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1990: Becraft P W; Bongard-Pierce D K; Sylvester A W; Poethig R S; Freeling M
The liguleless-1 gene acts tissue specifically in maize leaf development.
Developmental biology 1990;141(1):220-32.
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1990: Martienssen R; Barkan A; Taylor W C; Freeling M
Somatically heritable switches in the DNA modification of Mu transposable elements monitored with a suppressible mutant in maize.
Genes & development 1990;4(3):331-43.
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1989: Martienssen R A; Barkan A; Freeling M; Taylor W C
Molecular cloning of a maize gene involved in photosynthetic membrane organization that is regulated by Robertson's Mutator.
The EMBO journal 1989;8(6):1633-9.
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1989: Langdale J A; Lane B; Freeling M; Nelson T
Cell lineage analysis of maize bundle sheath and mesophyll cells.
Developmental biology 1989;133(1):128-39.
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1987: Chen C H; Oishi K K; Kloeckener-Gruissem B; Freeling M
Organ-specific expression of maize Adh1 is altered after a Mu transposon insertion.
Genetics 1987;116(3):469-77.
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1985: Hake S; Kelley P M; Taylor W C; Freeling M
Coordinate induction of alcohol dehydrogenase 1, aldolase, and other anaerobic RNAs in maize.
The Journal of biological chemistry 1985;260(8):5050-4.
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1984: Kelley P M; Freeling M
Anaerobic expression of maize fructose-1,6-diphosphate aldolase.
The Journal of biological chemistry 1984;259(22):14180-3.
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1984: Kelley P M; Freeling M
Anaerobic expression of maize glucose phosphate isomerase I.
The Journal of biological chemistry 1984;259(1):673-7.
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