Ron Appel

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TOP 3
Quandt Andreas; Masselot Alexandre; Hernandez Patricia; Hernandez Céline; Maffioletti Sergio; Appel Ron D; Lisacek Frederique
SwissPIT: An workflow-based platform for analyzing tandem-MS spectra using the Grid.
Hoogl Christine; Mostaguir Khaled; Appel Ron D
Creating 2DE databases for the World Wide Web.
Palagi Patricia M; Lisacek Frédérique; Appel Ron D
Database interrogation algorithms for identification of proteins in proteomic separations.

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2009: Quandt Andreas; Masselot Alexandre; Hernandez Patricia; Hernandez Céline; Maffioletti Sergio; Appel Ron D; Lisacek Frederique
SwissPIT: An workflow-based platform for analyzing tandem-MS spectra using the Grid.
Proteomics 2009;9(10):2648-55.
2009: Hoogl Christine; Mostaguir Khaled; Appel Ron D
Creating 2DE databases for the World Wide Web.
Methods in molecular biology (Clifton, N.J.) 2009;519():533-9.
2009: Palagi Patricia M; Lisacek Frédérique; Appel Ron D
Database interrogation algorithms for identification of proteins in proteomic separations.
Methods in molecular biology (Clifton, N.J.) 2009;519():515-31.
2008: Hoogland Christine; Mostaguir Khaled; Appel Ron D; Lisacek Frédérique
The World-2DPAGE Constellation to promote and publish gel-based proteomics data through the ExPASy server.
Journal of proteomics 2008;71(2):245-8.
2008: Robin Xavier; Hoogland Christine; Appel Ron D; Lisacek Frédérique
MIAPEGelDB, a web-based submission tool and public repository for MIAPE gel electrophoresis documents.
Journal of proteomics 2008;71(2):249-51.
2008: Quandt Andreas; Hernandez Patricia; Masselot Alexandre; Hernandez Céline; Maffioletti Sergio; Pautasso Cesare; Appel Ron D; Lisacek Frederique
swissPIT: a novel approach for pipelined analysis of mass spectrometry data.
Bioinformatics (Oxford, England) 2008;24(11):1416-7.
2007: Lisacek Frédérique; Appel Ron D
Systems Biology: a loose definition.
Proteomics 2007;7(6):825-7.
2007: Quandt Andreas; Hernandez Patricia; Kunzst Peter; Pautasso Cesare; Tuloup Marc; Hernandez Celine; Appel Ron D
Grid-based analysis of tandem mass spectrometry data in clinical proteomics.
Studies in health technology and informatics 2007;126():13-22.
2006: Lisacek Frédérique; Cohen-Boulakia Sarah; Appel Ron D
Proteome informatics II: bioinformatics for comparative proteomics.
Proteomics 2006;6(20):5445-66.
2006: Palagi Patricia M; Hernandez Patricia; Walther Daniel; Appel Ron D
Proteome informatics I: bioinformatics tools for processing experimental data.
Proteomics 2006;6(20):5435-44.
2006: Hernandez Patricia; Müller Markus; Appel Ron D
Automated protein identification by tandem mass spectrometry: issues and strategies.
Mass spectrometry reviews 2006;25(2):235-54.
2005: Palagi Patricia M; Walther Daniel; Quadroni Manfredo; Catherinet Sébastien; Burgess Jennifer; Zimmermann-Ivol Catherine G; Sanchez Jean-Charles; Binz Pierre-Alain; Hochstrasser Denis F; Appel Ron D
MSight: an image analysis software for liquid chromatography-mass spectrometry.
Proteomics 2005;5(9):2381-4.
2005: Scherl Alexander; François Patrice; Bento Manuela; Deshusses Jacques M; Charbonnier Yvan; Converset Véronique; Huyghe Antoine; Walter Nadia; Hoogland Christine; Appel Ron D; Sanchez Jean-Charles; Zimmermann-Ivol Catherine G; Corthals Garry L; Hochstrasser Denis F; Schrenzel Jacques
Correlation of proteomic and transcriptomic profiles of Staphylococcus aureus during the post-exponential phase of growth.
Journal of microbiological methods 2005;60(2):247-57.
2004: Hoogland Christine; Mostaguir Khaled; Sanchez Jean-Charles; Hochstrasser Denis F; Appel Ron D
SWISS-2DPAGE, ten years later.
Proteomics 2004;4(8):2352-6.
2004: Binz Pierre-Alain; Müller Markus; Hoogland Christine; Zimmermann Catherine; Pasquarello Carla; Corthals Garry; Sanchez Jean-Charles; Hochstrasser Denis F; Appel Ron D
The molecular scanner: concept and developments.
Current opinion in biotechnology 2004;15(1):17-23.
2003: Binz Pierre-Alain; Hochstrasser Denis F; Appel Ron D
Mass spectrometry-based proteomics: current status and potential use in clinical chemistry.
Clinical chemistry and laboratory medicine : CCLM / FESCC 2003;41(12):1540-51.
2003: Mostaguir Khaled; Hoogland Christine; Binz Pierre-Alain; Appel Ron D
The Make 2D-DB II package: conversion of federated two-dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases.
Proteomics 2003;3(8):1441-4.
2003: Gasteiger Elisabeth; Gattiker Alexandre; Hoogland Christine; Ivanyi Ivan; Appel Ron D; Bairoch Amos
ExPASy: The proteomics server for in-depth protein knowledge and analysis.
Nucleic acids research 2003;31(13):3784-8.
2003: Hernandez Patricia; Gras Robin; Frey Julien; Appel Ron D
Popitam: towards new heuristic strategies to improve protein identification from tandem mass spectrometry data.
Proteomics 2003;3(6):870-8.
2002: Müller Markus; Gras Robin; Binz Pierre-Alain; Hochstrasser Denis F; Appel Ron D
Molecular scanner experiment with human plasma: improving protein identification by using intensity distributions of matching peptide masses.
Proteomics 2002;2(10):1413-25.
2002: Gay Steven; Binz Pierre-Alain; Hochstrasser Denis F; Appel Ron D
Peptide mass fingerprinting peak intensity prediction: extracting knowledge from spectra.
Proteomics 2002;2(10):1374-91.
2002: Hochstrasser Denis F; Sanchez Jean-Charles; Appel Ron D
Proteomics and its trends facing nature's complexity.
Proteomics 2002;2(7):807-12.
2002: Müller Markus; Gras Robin; Appel Ron D; Bienvenut Willy V; Hochstrasser Denis F
Visualization and analysis of molecular scanner peptide mass spectra.
Journal of the American Society for Mass Spectrometry 2002;13(3):221-31.
2002: Geissbühler A; Lovis C; Spahni S; Appel R D; Ratib O; Boyer C; Hochstrasser D F; Baud R
A humanist's legacy in medical informatics: visions and accomplishments of Professor Jean-Raoul Scherrer.
Methods of information in medicine 2002;41(3):237-42.
2002: Bienvenut Willy V; Hoogland Christine; Greco Anna; Heller Manfred; Gasteiger Elisabeth; Appel Ron D; Diaz Jean-Jacques; Sanchez Jean-Charles; Hochstrasser Denis F
Hydrogen/deuterium exchange for higher specificity of protein identification by peptide mass fingerprinting.
Rapid communications in mass spectrometry : RCM 2002;16(6):616-26.
2001: Tonella L; Hoogland C; Binz P A; Appel R D; Hochstrasser D F; Sanchez J C
New perspectives in the Escherichia coli proteome investigation.
Proteomics 2001;1(3):409-23.
2001: Sanchez J C; Chiappe D; Converset V; Hoogland C; Binz P A; Paesano S; Appel R D; Wang S; Sennitt M; Nolan A; Cawthorne M A; Hochstrasser D F
The mouse SWISS-2D PAGE database: a tool for proteomics study of diabetes and obesity.
Proteomics 2001;1(1):136-63.
2000: Hoogland C; Sanchez J C; Tonella L; Binz P A; Bairoch A; Hochstrasser D F; Appel R D
The 1999 SWISS-2DPAGE database update.
Nucleic acids research 2000;28(1):286-8.
2000: Hochstrasser D; Sanchez J C; Binz P A; Bienvenut W; Appel R D
A clinical molecular scanner to study human proteome complexity.
Novartis Foundation symposium 2000;229():33-8; discussion 38-40.
1999: Hoogland C; Sanchez J C; Walther D; Baujard V; Baujard O; Tonella L; Hochstrasser D F; Appel R D
Two-dimensional electrophoresis resources available from ExPASy.
Electrophoresis 1999;20(18):3568-71.
1999: Gras R; Müller M; Gasteiger E; Gay S; Binz P A; Bienvenut W; Hoogland C; Sanchez J C; Bairoch A; Hochstrasser D F; Appel R D
Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection.
Electrophoresis 1999;20(18):3535-50.
1999: Gay S; Binz P A; Hochstrasser D F; Appel R D
Modeling peptide mass fingerprinting data using the atomic composition of peptides.
Electrophoresis 1999;20(18):3527-34.
1999: Binz P A; Müller M; Walther D; Bienvenut W V; Gras R; Hoogland C; Bouchet G; Gasteiger E; Fabbretti R; Gay S; Palagi P; Wilkins M R; Rouge V; Tonella L; Paesano S; Rossellat G; Karmime A; Bairoch A; Sanchez J C; Appel R D; Hochstrasser D F
A molecular scanner to automate proteomic research and to display proteome images.
Analytical chemistry 1999;71(21):4981-8.
1999: Hoogland C; Sanchez J C; Tonella L; Bairoch A; Hochstrasser D F; Appel R D
The SWISS-2DPAGE database: what has changed during the last year.
Nucleic acids research 1999;27(1):289-91.
1999: Wilkins M R; Gasteiger E; Bairoch A; Sanchez J C; Williams K L; Appel R D; Hochstrasser D F
Protein identification and analysis tools in the ExPASy server.
Methods in molecular biology (Clifton, N.J.) 1999;112():531-52.
1999: Appel R D; Hoogland C; Bairoch A; Hochstrasser D F
Constructing a 2-D database for the World Wide Web.
Methods in molecular biology (Clifton, N.J.) 1999;112():411-6.
1999: Appel R D; Bairoch A; Hochstrasser D F
2-D databases on the World Wide Web.
Methods in molecular biology (Clifton, N.J.) 1999;112():383-91.
1999: Appel R D; Hochstrasser D F
Computer analysis of 2-D images.
Methods in molecular biology (Clifton, N.J.) 1999;112():363-81.
1998: Wilkins M R; Gasteiger E; Wheeler C H; Lindskog I; Sanchez J C; Bairoch A; Appel R D; Dunn M J; Hochstrasser D F
Multiple parameter cross-species protein identification using MultiIdent--a world-wide web accessible tool.
Electrophoresis 1998;19(18):3199-206.
1998: Boyer C; Selby M; Scherrer J R; Appel R D
The Health On the Net Code of Conduct for medical and health Websites.
Computers in biology and medicine 1998;28(5):603-10.
1998: Baujard O; Baujard V; Aurel S; Boyer C; Appel R D
Trends in medical information retrieval on Internet.
Computers in biology and medicine 1998;28(5):589-601.
1998: Tonella L; Walsh B J; Sanchez J C; Ou K; Wilkins M R; Tyler M; Frutiger S; Gooley A A; Pescaru I; Appel R D; Yan J X; Bairoch A; Hoogland C; Morch F S; Hughes G J; Williams K L; Hochstrasser D F
'98 Escherichia coli SWISS-2DPAGE database update.
Electrophoresis 1998;19(11):1960-71.
1998: Baujard O; Baujard V; Aurel S; Boyer C; Appel R D
MARVIN, multi-agent softbot to retrieve multilingual medical information on the Web.
Medical informatics = Médecine et informatique 1998;23(3):187-91.
1998: Wilkins M R; Gasteiger E; Tonella L; Ou K; Tyler M; Sanchez J C; Gooley A A; Walsh B J; Bairoch A; Appel R D; Williams K L; Hochstrasser D F
Protein identification with N and C-terminal sequence tags in proteome projects.
Journal of molecular biology 1998;278(3):599-608.
1998: Hoogland C; Sanchez J C; Tonella L; Bairoch A; Hochstrasser D F; Appel R D
Current status of the SWISS-2DPAGE database.
Nucleic acids research 1998;26(1):332-3.
1998: Boyer C; Selby M; Appel R D
The Health On the Net Code of Conduct for medical and health web sites.
Studies in health technology and informatics 1998;52 Pt 2():1163-6.
1998: Baujard O; Baujard V; Aurel S; Boyer C; Appel R D
A multi-agent softbot to retrieve medical information on Internet.
Studies in health technology and informatics 1998;52 Pt 1():150-4.
1997: Hoogland C; Baujard V; Sanchez J C; Hochstrasser D F; Appel R D
Make2ddb: a simple package to set up a two-dimensional electrophoresis database for the World Wide Web.
Electrophoresis 1997;18(15):2755-8.
1997: Appel R D; Vargas J R; Palagi P M; Walther D; Hochstrasser D F
Melanie II--a third-generation software package for analysis of two-dimensional electrophoresis images: II. Algorithms.
Electrophoresis 1997;18(15):2735-48.
1997: Appel R D; Palagi P M; Walther D; Vargas J R; Sanchez J C; Ravier F; Pasquali C; Hochstrasser D F
Melanie II--a third-generation software package for analysis of two-dimensional electrophoresis images: I. Features and user interface.
Electrophoresis 1997;18(15):2724-34.
1997: Boyer C; Baujard O; Baujard V; Aurel S; Selby M; Appel R D
Health On the Net automated database of health and medical information.
International journal of medical informatics 1997;47(1-2):27-9.
1997: Sanchez J C; Wirth P; Jaccoud S; Appel R D; Sarto C; Wilkins M R; Hochstrasser D F
Simultaneous analysis of cyclin and oncogene expression using multiple monoclonal antibody immunoblots.
Electrophoresis 1997;18(3-4):638-41.
1997: Peitsch M C; Wilkins M R; Tonella L; Sanchez J C; Appel R D; Hochstrasser D F
Large-scale protein modelling and integration with the SWISS-PROT and SWISS-2DPAGE databases: the example of Escherichia coli.
Electrophoresis 1997;18(3-4):498-501.
1997: Wilkins M R; Lindskog I; Gasteiger E; Bairoch A; Sanchez J C; Hochstrasser D F; Appel R D
Detailed peptide characterization using PEPTIDEMASS--a World-Wide-Web-accessible tool.
Electrophoresis 1997;18(3-4):403-8.
1996: Wilkins M R; Hochstrasser D F; Sanchez J C; Bairoch A; Appel R D
Integrating two-dimensional gel databases using the Melanie II software.
Trends in biochemical sciences 1996;21(12):496-7.
1996: Wilkins M R; Gasteiger E; Sanchez J C; Appel R D; Hochstrasser D F
Protein identification with sequence tags.
Current biology : CB 1996;6(12):1543-4.
1996: Wilkins M R; Ou K; Appel R D; Sanchez J C; Yan J X; Golaz O; Farnsworth V; Cartier P; Hochstrasser D F; Williams K L; Gooley A A
Rapid protein identification using N-terminal "sequence tag" and amino acid analysis.
Biochemical and biophysical research communications 1996;221(3):609-13.
1996: Golaz O; Wilkins M R; Sanchez J C; Appel R D; Hochstrasser D F; Williams K L
Identification of proteins by their amino acid composition: an evaluation of the method.
Electrophoresis 1996;17(3):573-9.
1996: Sanchez J C; Golaz O; Frutiger S; Schaller D; Appel R D; Bairoch A; Hughes G J; Hochstrasser D F
The yeast SWISS-2DPAGE database.
Electrophoresis 1996;17(3):556-65.
1996: Pasquali C; Frutiger S; Wilkins M R; Hughes G J; Appel R D; Bairoch A; Schaller D; Sanchez J C; Hochstrasser D F
Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database.
Electrophoresis 1996;17(3):547-55.
1996: Appel R D; Bairoch A; Sanchez J C; Vargas J R; Golaz O; Pasquali C; Hochstrasser D F
Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data.
Electrophoresis 1996;17(3):540-6.
1996: Wilkins M R; Pasquali C; Appel R D; Ou K; Golaz O; Sanchez J C; Yan J X; Gooley A A; Hughes G; Humphery-Smith I; Williams K L; Hochstrasser D F
From proteins to proteomes: large scale protein identification by two-dimensional electrophoresis and amino acid analysis.
Bio/technology (Nature Publishing Company) 1996;14(1):61-5.
1996: Appel R D; Sanchez J C; Bairoch A; Golaz O; Ravier F; Pasquali C; Hughes G J; Hochstrasser D F
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis, its status in 1995.
Nucleic acids research 1996;24(1):180-1.
1996: Wilkins M R; Sanchez J C; Gooley A A; Appel R D; Humphery-Smith I; Hochstrasser D F; Williams K L
Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it.
Biotechnology & genetic engineering reviews 1996;13():19-50.
1995: Sanchez J C; Appel R D; Golaz O; Pasquali C; Ravier F; Bairoch A; Hochstrasser D F
Inside SWISS-2DPAGE database.
Electrophoresis 1995;16(7):1131-51.
1995: Cremona O; Muda M; Appel R D; Frutiger S; Hughes G J; Hochstrasser D F; Geinoz A; Gabbiani G
Differential protein expression in aortic smooth muscle cells cultured from newborn and aged rats.
Experimental cell research 1995;217(2):280-7.
1995: Hochstrasser D F; Appel R D; Golaz O; Pasquali C; Sanchez J C; Bairoch A
Sharing of worldwide spread knowledge using hypermedia facilities & fast communication protocols (Mosaic and World Wide Web): the example of ExPASy.
Methods of information in medicine 1995;34(1-2):75-8.
1994: Appel R D; Sanchez J C; Bairoch A; Golaz O; Ravier F; Pasquali C; Hughes G J; Hochstrasser D F
The SWISS-2DPAGE database of two-dimensional polyacrylamide gel electrophoresis.
Nucleic acids research 1994;22(17):3581-2.
1993: Appel R D; Sanchez J C; Bairoch A; Golaz O; Miu M; Vargas J R; Hochstrasser D F
SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images.
Electrophoresis 1993;14(11):1232-8.
1993: Golaz O; Hughes G J; Frutiger S; Paquet N; Bairoch A; Pasquali C; Sanchez J C; Tissot J D; Appel R D; Walzer C
Plasma and red blood cell protein maps: update 1993.
Electrophoresis 1993;14(11):1223-31.
1993: Hughes G J; Frutiger S; Paquet N; Pasquali C; Sanchez J C; Tissot J D; Bairoch A; Appel R D; Hochstrasser D F
Human liver protein map: update 1993.
Electrophoresis 1993;14(11):1216-22.
1991: Appel R D; Hochstrasser D F; Funk M; Vargas J R; Pellegrini C; Muller A F; Scherrer J R
The MELANIE project: from a biopsy to automatic protein map interpretation by computer.
Electrophoresis 1991;12(10):722-35.
1991: Hochstrasser D F; Appel R D; Vargas R; Perrier R; Vurlod J F; Ravier F; Pasquali C; Funk M; Pellegrini C; Muller A F
A clinical molecular scanner: the Melanie project.
M.D. computing : computers in medical practice 1991;8(2):85-91.
1991: Jaconi M E; Theler J M; Schlegel W; Appel R D; Wright S D; Lew P D
Multiple elevations of cytosolic-free Ca2+ in human neutrophils: initiation by adherence receptors of the integrin family.
The Journal of cell biology 1991;112(6):1249-57.
1990: Hochstrasser D F; Funk M; Appel R D; Pun T; James R W; Hochstrasser A C; Scherrer J R; Pellegrini C; Müller A F
From biopsy to automatic diagnosis.
Schweizerische medizinische Wochenschrift 1990;120(49):1862-6.
1988: Pun T; Hochstrasser D F; Appel R D; Funk M; Villars-Augsburger V; Pellegrini C
Computerized classification of two-dimensional gel electrophoretograms by correspondence analysis and ascendant hierarchical clustering.
Applied and theoretical electrophoresis : the official journal of the International Electrophoresis Society 1988;1(1):3-9.

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Ron Appel

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