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Harold Garner

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Jonathan W Uhr; Xiaojing J Zhang; Raheela Ashfaq; Lawrence Cheng; Eugene P Frenkel; Michael L Huebschman; Gareth A Hughes; Nancy L Lane; Alice T Lin; Huaying Liu; Dipen R Rana; Harold R Garner
Molecular profiling of individual tumor cells by hyperspectral microscopic imaging.
Asha Acharya; Cristi L Galindo; Harold R Garner; Chetan P Hans; Robert B Hinton; Sara N Koenig; Walter H Merrill; Haley A Nichols; Vidu Garg
Inhibitory role of Notch1 in calcific aortic valve disease.
Ryan M Huebinger; Harold R Garner; Robert C Barber
Pathway genetic load allows simultaneous evaluation of multiple genetic associations.

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2012: Jonathan W Uhr; Xiaojing J Zhang; Raheela Ashfaq; Lawrence Cheng; Eugene P Frenkel; Michael L Huebschman; Gareth A Hughes; Nancy L Lane; Alice T Lin; Huaying Liu; Dipen R Rana; Harold R Garner
Molecular profiling of individual tumor cells by hyperspectral microscopic imaging.
Translational research : the journal of laboratory and clinical medicine 2012;159(5):366-75.
2011: Asha Acharya; Cristi L Galindo; Harold R Garner; Chetan P Hans; Robert B Hinton; Sara N Koenig; Walter H Merrill; Haley A Nichols; Vidu Garg
Inhibitory role of Notch1 in calcific aortic valve disease.
PloS one 2011;6(11):e27743.
2010: Ryan M Huebinger; Harold R Garner; Robert C Barber
Pathway genetic load allows simultaneous evaluation of multiple genetic associations.
Burns : journal of the International Society for Burn Injuries 2010;36(6):787-92.
2010: Mounir Errami; Cristi L Galindo; Joseph A Hill; Michael A Skinner; Amina T Tassa; Harold R Garner
Carbamazepine alone and in combination with doxycycline attenuates isoproterenol-induced cardiac hypertrophy.
Heart international 2010;5(1):e7.
2010: Mounir Errami; Zhaohui Sun; Angela C George; Tara C Long; Michael A Skinner; Jonathan Wren; Harold R Garner
Identifying duplicate content using statistically improbable phrases.
Bioinformatics (Oxford, England) 2010;26(11):1453-7.
2010: Angela C George; Tara C Long; Harold R Garner
Quaere verum.
Clinical chemistry 2010;56(4):673-4.
2009: C L Galindo; L J McIver; J F McCormick; Michael A Skinner; Y Xie; R A Gelhausen; K Ng; N M Kumar; Harold R Garner
Global microsatellite content distinguishes humans, primates, animals, and plants.
Molecular biology and evolution 2009;26(12):2809-19.
2009: S Katari; M Wallack; M Huebschman; Paul Pantano; Harold R Garner
Fabrication and evaluation of a near-infrared hyperspectral imaging system.
Journal of microscopy 2009;236(1):11-7.
2009: Tara C Long; Mounir Errami; Angela C George; Zhaohui Sun; Harold R Garner
Scientific integrity. Responding to possible plagiarism.
Science (New York, N.Y.) 2009;323(5919):1293-4.
2009: Cristi L Galindo; Michael A Skinner; Mounir Errami; L Danielle Olson; David A Watson; Jing Li; John F McCormick; Lauren J McIver; Neil M Kumar; Thinh Q Pham; Harold R Garner
Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure.
BMC physiology 2009;9():23.
2009: Niclas C Tan; Wayne G Fisher; Kevin P Rosenblatt; Harold R Garner
Application of multiple statistical tests to enhance mass spectrometry-based biomarker discovery.
BMC bioinformatics 2009;10():144.
2008: N Marthandan; S Klyza; S Li; Y U Kwon; T Kodadek; Harold R Garner
Construction and evaluation of an automated light directed protein-detecting microarray synthesizer.
IEEE transactions on nanobioscience 2008;7(1):20-7.
2008: Mounir Errami; Cristi L Galindo; Amina Tassa; John M Dimaio; James A Hill; Harold R Garner
Doxycycline attenuates isoproterenol- and transverse aortic banding-induced cardiac hypertrophy in mice.
The Journal of pharmacology and experimental therapeutics 2008;324(3):1196-203.
2008: Mounir Errami; Harold R Garner
A tale of two citations.
Nature 2008;451(7177):397-9.
2008: Mounir Errami; Justin M Hicks; Wayne Fisher; David Trusty; Jonathan Wren; Tara C Long; Harold R Garner
Déjà vu--a study of duplicate citations in Medline.
Bioinformatics (Oxford, England) 2008;24(2):243-9.
2007: Wayne G Fisher; Kevin P Rosenblatt; David A Fishman; Gordon R Whiteley; Alvydas Mikulskis; Scott A Kuzdzal; Mary F Lopez; Niclas Chiang Tan; Dwight C German; Harold R Garner
A robust biomarker discovery pipeline for high-performance mass spectrometry data.
Journal of bioinformatics and computational biology 2007;5(5):1023-45.
2007: Dwight C German; Prem Gurnani; Animesh Nandi; Harold R Garner; Wayne Fisher; Ramon Diaz-Arrastia; Padraig E O'Suilleabhain; Kevin P Rosenblatt
Serum biomarkers for Alzheimer's disease: proteomic discovery.
Biomedicine & pharmacotherapy = Biomédecine & pharmacothérapie 2007;61(7):383-9.
2007: Mark F Burkart; Jonathan Wren; Jason Herschkowitz; Charles M Perou; Harold R Garner
Clustering microarray-derived gene lists through implicit literature relationships.
Bioinformatics (Oxford, England) 2007;23(15):1995-2003.
2007: Kar-wai Ng; Harold R Garner
Nome della Proteina: a protein identification resolution database.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2007;26(4):70-2.
2007: Mounir Errami; Jonathan Wren; Justin M Hicks; Harold R Garner
eTBLAST: a web server to identify expert reviewers, appropriate journals and similar publications.
Nucleic acids research 2007;35(Web Server issue):W12-5.
2007: Harold R Garner; Justin Hicks; Jonathan Wren; Mounir Errami
Medline: the knowledge buried therein, its potential, and cost.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2007;26(3):73-4.
2007: Paras Khandheria; Harold R Garner
Developing a modern web interface for database-driven bioinformatics tools.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2007;26(2):96-8.
2007: Jyoti K Shah; Harold R Garner; Michael A White; David Shames; John D Minna
sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database.
BMC bioinformatics 2007;8():178.
2007: Jeffrey Laidlaw; Yevgeniy Gelfand; Kar-Wai Ng; Harold R Garner; Rama Ranganathan; Gary Benson; John W Fondon
Elevated basal slippage mutation rates among the Canidae.
The Journal of heredity 2007;98(5):452-60.
2007: Stephen P Crozier; Harold R Garner
Ensemble-based RNA secondary structure characterization.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2007;26(1):72-86.
2007: John W Fondon; Harold R Garner
Detection of length-dependent effects of tandem repeat alleles by 3-D geometric decomposition of craniofacial variation.
Development genes and evolution 2007;217(1):79-85.
2006: James Lewis; Stephan Ossowski; Justin Hicks; Mounir Errami; Harold R Garner
Text similarity: an alternative way to search MEDLINE.
Bioinformatics (Oxford, England) 2006;22(18):2298-304.
2006: Lena Flood; Robert S Kumar; Rashmi Shah; Quinlan Amos; Jonathan Wren; Ralph V Shohet; Harold R Garner
Melatonin administration does not affect isoproterenol-induced LVH.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2006;25(3):84-7.
2005: Deborah A Ferguson; Matthew R Muenster; Qun Zang; Jeffrey A Spencer; Jeoffrey Schageman; Yun Lian; Harold R Garner; Richard B Gaynor; J Warren Huff; Alexander Pertsemlidis; Raheela Ashfaq; John O Schorge; Carlos R Becerra; Noelle Sevilir Williams; Jonathan M Graff
Selective identification of secreted and transmembrane breast cancer markers using Escherichia coli ampicillin secretion trap.
Cancer research 2005;65(18):8209-17.
2005: Bala Munjuluri; Michael L Huebschman; Harold R Garner
Rapid hologram updates for real-time volumetric information displays.
Applied optics 2005;44(24):5076-85.
2005: Jonathan Wren; Harold R Garner
Data-mining analysis suggests an epigenetic pathogenesis for type 2 diabetes.
Journal of biomedicine & biotechnology 2005;2005(2):104-12.
2005: David H Geho; Nicholas Lahar; Prem Gurnani; Michael Huebschman; Paul C Herrmann; Virginia Espina; Alice Shi; Julia D Wulfkuhle; Harold R Garner; Emanuel F Petricoin; Lance A Liotta; Kevin P Rosenblatt
Pegylated, steptavidin-conjugated quantum dots are effective detection elements for reverse-phase protein microarrays.
Bioconjugate chemistry 2005;16(3):559-66.
2005: Yun Lian; Harold R Garner
Evidence for the regulation of alternative splicing via complementary DNA sequence repeats.
Bioinformatics (Oxford, England) 2005;21(8):1358-64.
2005: Norikatsu Mizumoto; Francis Hui; Dale Edelbaum; M Ryan Weil; Jonathan Wren; David Shalhevet; Hiroyuki Matsue; Lei Liu; Harold R Garner; Akira Takashima
Differential activation profiles of multiple transcription factors during dendritic cell maturation.
The Journal of investigative dermatology 2005;124(4):718-24.
2005: Shuwei Li; Nishanth Marthandan; Dawn Bowerman; Harold R Garner; Thomas Kodadek
Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy.
Chemical communications (Cambridge, England) 2005;(5):581-3.
2005: Jonathan Wren; Jeffrey T Chang; James Pustejovsky; Eytan Adar; Harold R Garner; Russ B Altman
Biomedical term mapping databases.
Nucleic acids research 2005;33(Database issue):D289-93.
2004: John W Fondon; Harold R Garner
Molecular origins of rapid and continuous morphological evolution.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(52):18058-63.
2004: Amy E Wandstrat; Charles Nguyen; Nisha Limaye; Alice Y Chan; Srividya Subramanian; Xiang-Hong Tian; Young-Sun Yim; Alexander Pertsemlidis; Harold R Garner; Laurence Morel; Edward K Wakeland
Association of extensive polymorphisms in the SLAM/CD2 gene cluster with murine lupus.
Immunity 2004;21(6):769-80.
2004: Alexander Pertsemlidis; Harold R Garner
Text comparison based on dynamic programming.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2004;23(6):66-71.
2004: Yuri Belosludtsev; Dawn Bowerman; Ryan Weil; Nishanth Marthandan; Robert P Balog; Kevin Luebke; Jonathan Lawson; Stephan Johnston; C Rick Lyons; Kevin Obrien; Harold R Garner; Thomas F Powdrill
Organism identification using a genome sequence-independent universal microarray probe set.
BioTechniques 2004;37(4):654-8, 660.
2004: Kar-wai Ng; Jonathan Lawson; Harold R Garner
PathoGene: a pathogen coding sequence discovery and analysis resource.
BioTechniques 2004;37(2):218, 220-2.
2004: M Ryan Weil; Piotr Widlak; John D Minna; Harold R Garner
Global survey of chromatin accessibility using DNA microarrays.
Genome research 2004;14(7):1374-81.
2004: Shuwei Li; Dawn Bowerman; Nishanth Marthandan; Stanley Klyza; Kevin J Luebke; Harold R Garner; Thomas Kodadek
Photolithographic synthesis of peptoids.
Journal of the American Chemical Society 2004;126(13):4088-9.
2004: Kevin J Luebke; Duane E Carter; Harold R Garner; Kathlynn Brown
Patterning adhesion of mammalian cells with visible light, tris(bipyridyl)ruthenium(II) chloride, and a digital micromirror array.
Journal of biomedical materials research. Part A 2004;68(4):696-703.
2004: Jonathan Wren; Raffi Bekeredjian; Jelena A Stewart; Ralph V Shohet; Harold R Garner
Knowledge discovery by automated identification and ranking of implicit relationships.
Bioinformatics (Oxford, England) 2004;20(3):389-98.
2004: Jonathan Wren; Harold R Garner
Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network.
Bioinformatics (Oxford, England) 2004;20(2):191-8.
2004: Jeoffrey Schageman; Christopher J Horton; Sijing Niu; Harold R Garner; Alexander Pertsemlidis
ELXR: a resource for rapid exon-directed sequence analysis.
Genome biology 2004;5(5):R36.
2003: Monica M Horvath; John W Fondon; Harold R Garner
Low hanging fruit: a subset of human cSNPs is both highly non-uniform and predictable.
Gene 2003;312():197-206.
2003: Dixie L Peters; Robert C Barber; Lena Flood; Harold R Garner; Grant E O'Keefe
Methodologic quality and genotyping reproducibility in studies of tumor necrosis factor -308 G-->A single nucleotide polymorphism and bacterial sepsis: implications for studies of complex traits.
Critical care medicine 2003;31(6):1691-6.
2003: Jeoffrey Schageman; Deborah A Ferguson; Qun Zang; Jeffrey A Spencer; J Warren Huff; Jonathan M Graff; Yun Lian; Harold R Garner; Alexander Pertsemlidis
Reading the fine print of the human genome.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2003;22(2):105-8.
2003: Kevin J Luebke; Robert P Balog; Harold R Garner
Prioritized selection of oligodeoxyribonucleotide probes for efficient hybridization to RNA transcripts.
Nucleic acids research 2003;31(2):750-8.
2003: Fuqiang Tang; Lena Flood; Alexander Pertsemlidis; Harold R Garner
SNPCEQer II: the integrated detection and analysis of SNPs in DNA sequences.
Applied bioinformatics 2003;2(3):151-4.
2002: Amit V Kulkarni; Noelle Sevilir Williams; Yun Lian; Jonathan Wren; David Mittelman; Alexander Pertsemlidis; Harold R Garner
ARROGANT: an application to manipulate large gene collections.
Bioinformatics (Oxford, England) 2002;18(11):1410-7.
2002: Robert P Balog; Y Emi Ponce de Souza; Hue M Tang; Gina M DeMasellis; Boning Gao; Adrian Avila; Desmond J Gaban; David Mittelman; John D Minna; Kevin J Luebke; Harold R Garner
Parallel assessment of CpG methylation by two-color hybridization with oligonucleotide arrays.
Analytical biochemistry 2002;309(2):301-10.
2002: Adel M Talaat; Susan T Howard; Walker Hale; Rick Lyons; Harold R Garner; Stephan Johnston
Genomic DNA standards for gene expression profiling in Mycobacterium tuberculosis.
Nucleic acids research 2002;30(20):e104.
2002: Lena Flood; F Tang; Monica M Horvath; Alexander Pertsemlidis; Harold R Garner
SNPCEQer: detecting SNPs in sequences generated by the Beckman CEQ2000 DNA Analysis System.
BioTechniques 2002;33(4):814, 816, 818-20 passim.
2002: Harold R Garner; Robert P Balog; Kevin J Luebke
The evolution of custom microarray manufacture.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2002;21(4):123-5.
2002: Michael L Huebschman; Roger A Schultz; Harold R Garner
Characteristics and capabilities of the hyperspectral imaging microscope.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2002;21(4):104-17.
2002: M Ryan Weil; Timothy Macatee; Harold R Garner
Toward a universal standard: comparing two methods for standardizing spotted microarray data.
BioTechniques 2002;32(6):1310-4.
2002: Jonathan Wren; David Mittelman; Harold R Garner
SIGNAL-Sequence Information and GeNomic AnaLysis.
Computer methods and programs in biomedicine 2002;68(2):177-81.
2002: Jonathan Wren; Amit Kulkarni; John Joslin; Ronald A Butow; Harold R Garner
Cross-hybridization on PCR-spotted microarrays.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2002;21(2):71-5.
2002: Jeoffrey Schageman; Mujeeb Basit; Teresa D Gallardo; Harold R Garner; Ralph V Shohet
MarC-V: a spreadsheet-based tool for analysis, normalization, and visualization of single cDNA microarray experiments.
BioTechniques 2002;32(2):338-40, 342, 344.
2002: Jonathan Wren; Harold R Garner
Heuristics for identification of acronym-definition patterns within text: towards an automated construction of comprehensive acronym-definition dictionaries.
Methods of information in medicine 2002;41(5):426-34.
2001: Roger A Schultz; T Nielsen; J R Zavaleta; R Ruch; R Wyatt; Harold R Garner
Hyperspectral imaging: a novel approach for microscopic analysis.
Cytometry 2001;43(4):239-47.
2001: Eva Forgacs; Jonathan Wren; Craig Kamibayashi; Masashi Kondo; X L Xu; S Markowitz; Gail Tomlinson; Carolyn Y Muller; Adi F Gazdar; Harold R Garner; John D Minna
Searching for microsatellite mutations in coding regions in lung, breast, ovarian and colorectal cancers.
Oncogene 2001;20(8):1005-9.
2001: Charles Epstein; James Waddle; Walker Hale; V Davé; Janet Thornton; T L Macatee; Harold R Garner; Ronald A Butow
Genome-wide responses to mitochondrial dysfunction.
Molecular biology of the cell 2001;12(2):297-308.
2000: Alexander Pertsemlidis; A Pande; B Miller; P Schilling; Ming-Hui Wei; Michael I Lerman; John D Minna; Harold R Garner; David Mittelman
PANORAMA: an integrated Web-based sequence analysis tool and its role in gene discovery.
Genomics 2000;70(3):300-6.
2000: B Liao; Walker Hale; Charles Epstein; Ronald A Butow; Harold R Garner
MAD: a suite of tools for microarray data management and processing.
Bioinformatics (Oxford, England) 2000;16(10):946-7.
2000: Jonathan Wren; Eva Forgacs; John W Fondon; Alexander Pertsemlidis; S Y Cheng; Teresa D Gallardo; R Sanders Williams; Ralph V Shohet; John D Minna; Harold R Garner
Repeat polymorphisms within gene regions: phenotypic and evolutionary implications.
American journal of human genetics 2000;67(2):345-56.
2000: K A Kukanskis; Zakir Siddiquee; Ralph V Shohet; Harold R Garner
Mix of sequencing technologies for sequence closure: an example.
BioTechniques 2000;28(4):630-2, 634.
2000: Ignacio I Wistuba; Carmen Behrens; Arvind K Virmani; G Mele; Sara Milchgrub; Luc Girard; John W Fondon; Harold R Garner; B McKay; Farida Latif; Michael I Lerman; Stephen Lam; Adi F Gazdar; John D Minna
High resolution chromosome 3p allelotyping of human lung cancer and preneoplastic/preinvasive bronchial epithelium reveals multiple, discontinuous sites of 3p allele loss and three regions of frequent breakpoints.
Cancer research 2000;60(7):1949-60.
1999: K Kukanskis; Jerry Elkind; Jose Melendez; T Murphy; G Miller; Harold R Garner
Detection of DNA hybridization using the TISPR-1 surface plasmon resonance biosensor.
Analytical biochemistry 1999;274(1):7-17.
1998: simon rayner; S Brignac; R Bumeister; Yuri Belosludtsev; T Ward; O Grant; K O'Brien; Glen A Evans; Harold R Garner
MerMade: an oligodeoxyribonucleotide synthesizer for high throughput oligonucleotide production in dual 96-well plates.
Genome research 1998;8(7):741-7.
1998: John W Fondon; G M Mele; Ruth I Brezinschek; D Cummings; A Pande; Jonathan Wren; KM O'Brien; KC Kupfer; Ming-Hui Wei; M Lerman; John D Minna; Harold R Garner
Computerized polymorphic marker identification: experimental validation and a predicted human polymorphism catalog.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(13):7514-9.
1998: KM O'Brien; Jeoffrey Schageman; T H Major; Glen A Evans; Harold R Garner
Improving read lengths by recomputing the matrices of Model 377 DNA Sequencers.
BioTechniques 1998;24(6):1014-6.
1998: KM O'Brien; Jeoffrey Schageman; Glen A Evans; Harold R Garner
Reconstructing fragmented gel files created by Model 377 DNA Sequencers.
BioTechniques 1998;24(6):1004-5.
1998: KM O'Brien; M A Ironside; Maria Athanasiou; Mujeeb Basit; Glen A Evans; Harold R Garner
Correcting data shifts in gel files created by Model 377 DNA Sequencers.
BioTechniques 1998;24(6):1002-3.
1998: H Huang; Harold R Garner
Gene Alert--a sequence search results keyword parser.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 1998;17(2):119-22, 128.
1997: KM O'Brien; John W Fondon; Glen A Evans; Harold R Garner
Rescuing corrupted gel files from Model 377 and 373 DNA Sequencers.
BioTechniques 1997;22(6):1162-3.
1997: P Li; KC Kupfer; C J Davies; David G Burbee; Glen A Evans; Harold R Garner
PRIMO: A primer design program that applies base quality statistics for automated large-scale DNA sequencing.
Genomics 1997;40(3):476-85.