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Rolf Apweiler

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Joseph M Foster; Henning Hermjakob; Pablo Moreno; Christoph Steinbeck; Rolf Apweiler; Antonio Fabregat; Michael J O Wakelam; Juan Antonio Vizcaino
LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics.
Prudence Mutowo-Meullenet; Claire O'Donovan; Tony Sawford; Yasmin Alam-Faruque; Emily Dimmer; Rachael P Huntley; Maria Jesus Martin; Rolf Apweiler
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.
Alexandra M E Jones; Marko Jovanovic; Craig Lawless; Günter Lochnit; Lennart Martens; Christian Ravnsborg; Sabine P Schrimpf; Yhong-Hee Shim; Deni Subasic; Andreas Tholey; Manuel Weiss; Ruedi Aebersold; Christian H Ahrens; Rolf Apweiler; Katja Baerenfaller; Mark Baker; Emøke Bendixen; Steve Briggs; Philip Brownridge; Erich Brunner; Michael Daube; Eric Deutsch; Ueli Grossniklaus; Joshua L Heazlewood; Michael O Hengartner; Henning Hermjakob; Christian von Mering; Klaas van Wijk; Xue Zheng
The HUPO initiative on Model Organism Proteomes, iMOP.

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2013: Joseph M Foster; Henning Hermjakob; Pablo Moreno; Christoph Steinbeck; Rolf Apweiler; Antonio Fabregat; Michael J O Wakelam; Juan Antonio Vizcaino
LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics.
PloS one 2013;8(5):e61951.
2013: Prudence Mutowo-Meullenet; Claire O'Donovan; Tony Sawford; Yasmin Alam-Faruque; Emily Dimmer; Rachael P Huntley; Maria Jesus Martin; Rolf Apweiler
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.
Database : the journal of biological databases and curation 2013;2013():bas062.
2012: Alexandra M E Jones; Marko Jovanovic; Craig Lawless; Günter Lochnit; Lennart Martens; Christian Ravnsborg; Sabine P Schrimpf; Yhong-Hee Shim; Deni Subasic; Andreas Tholey; Manuel Weiss; Ruedi Aebersold; Christian H Ahrens; Rolf Apweiler; Katja Baerenfaller; Mark Baker; Emøke Bendixen; Steve Briggs; Philip Brownridge; Erich Brunner; Michael Daube; Eric Deutsch; Ueli Grossniklaus; Joshua L Heazlewood; Michael O Hengartner; Henning Hermjakob; Christian von Mering; Klaas van Wijk; Xue Zheng
The HUPO initiative on Model Organism Proteomes, iMOP.
Proteomics 2012;12(3):340-5.
2011: Johannes Griss; Henning Hermjakob; María Martín; Claire O'Donovan; Rolf Apweiler; Juan Antonio Vizcaino
Consequences of the discontinuation of the International Protein Index (IPI) database and its substitution by the UniProtKB "complete proteome" sets.
Proteomics 2011;11(22):4434-8.
2011: Jan-Pieter Abrahams; Rolf Apweiler; Rudi Balling; Michela G Bertero; Janusz M Bujnicki; Naomi E Chayen; Patrick Chène; Gary L Corthals; Tomasz Dyląg; Friedrich Förster; Albert J R Heck; Peter J F Henderson; Ralf Herwig; Philippe Jehenson; Sasa Jenko Kokalj; Ernest Laue; Pierre Legrain; Lennart Martens; Cristiano Migliorini; Andrea Musacchio; Marjetka Podobnik; Gebhard F X Schertler; Gideon Schreiber; Titia K Sixma; August B Smit; David Stuart; Dmitri I Svergun; Michael J Taussig
"4D Biology for health and disease" workshop report.
New biotechnology 2011;28(4):291-3.
2011: Joseph M Foster; Sven Degroeve; Laurent Gatto; Matthieu Visser; Rui Wang; Johannes Griss; Rolf Apweiler; Lennart Martens
A posteriori quality control for the curation and reuse of public proteomics data.
Proteomics 2011;11(11):2182-94.
2011: Ning Deng; Jun Zhang; Chenggong Zong; Yueju Wang; Haojie Lu; Pengyuan Yang; Wenhai Wang; Glen W Young; Yibin Wang; Paavo Korge; Christopher Lotz; Philip Doran; David A Liem; Rolf Apweiler; James N Weiss; Huilong Duan; Peipei Ping
Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria.
Molecular & cellular proteomics : MCP 2011;10(2):M110.000117.
2011: Claire O'Donovan; Rolf Apweiler
A guide to UniProt for protein scientists.
Methods in molecular biology (Clifton, N.J.) 2011;694():25-35.
2010: Rolf Apweiler; Richard Armstrong; Amos Bairoch; Athel Cornish-Bowden; Peter J Halling; Jan-Hendrik S Hofmeyr; Carsten Kettner; Thomas S Leyh; Johann Rohwer; Dietmar Schomburg; Christoph Steinbeck; Keith Tipton
A large-scale protein-function database.
Nature chemical biology 2010;6(11):785.
2010: David Simper; Ursula Mayr; Carmen Urbich; Anna Zampetaki; Marianna Prokopi; ATHANASIOS DIDANGELOS; Angelika Saje; Michael Mueller; Ulrike Benbow; Andrew C Newby; Rolf Apweiler; Salman Rahman; Stefanie Dimmeler; Qingbo Xu; Manuel Mayr
Comparative proteomics profiling reveals role of smooth muscle progenitors in extracellular matrix production.
Arteriosclerosis, thrombosis, and vascular biology 2010;30(7):1325-32.
2010: Yasmin Alam-Faruque; Emily C Dimmer; Rachael P Huntley; Claire O'Donovan; Peter Scambler; Rolf Apweiler
The Renal Gene Ontology Annotation Initiative.
Organogenesis 2010;6(2):71-5.
2010: Alex A Freitas; Daniela C Wieser; Rolf Apweiler
On the importance of comprehensible classification models for protein function prediction.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2010;7(1):172-82.
2009: David Binns; Emily Dimmer; Rachael Huntley; Daniel Barrell; Claire O'Donovan; Rolf Apweiler
QuickGO: a web-based tool for Gene Ontology searching.
Bioinformatics (Oxford, England) 2009;25(22):3045-6.
2009: Kai Ye; Marcel H Schulz; Quan Long; Rolf Apweiler; Zemin Ning
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.
Bioinformatics (Oxford, England) 2009;25(21):2865-71.
2009: Garth R Ilsley; Nicholas M Luscombe; Rolf Apweiler
Know your limits: assumptions, constraints and interpretation in systems biology.
Biochimica et biophysica acta 2009;1794(9):1280-7.
2009: Martin Eisenacher; Lennart Martens; Tanja Hardt; Michael Kohl; Harald Barsnes; Kenny Helsens; Jari Häkkinen; Fredrik Levander; Ruedi Aebersold; Joël Vandekerckhove; Michael J Dunn; Frederique Lisacek; Jennifer A Siepen; Simon J Hubbard; Pierre-Alain Binz; Martin Blüggel; Herbert Thiele; John Cottrell; Helmut E Meyer; Rolf Apweiler; Christian Stephan
Getting a grip on proteomics data - Proteomics Data Collection (ProDaC).
Proteomics 2009;9(15):3928-33.
2009: Nicholas Furnham; John S Garavelli; Rolf Apweiler; Janet M Thornton
Missing in action: enzyme functional annotations in biological databases.
Nature chemical biology 2009;5(8):521-5.
2009: Martin Eisenacher; Lennart Martens; Harald Barsnes; Tanja Hardt; Michael Kohl; Jari Häkkinen; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece.
Proteomics 2009;9(14):3626-9.
2009: Henry Rodriguez; Mike Snyder; Mathias Uhlén; Philip C Andrews; Ronald Beavis; Christoph Borchers; Robert J Chalkley; Sang Yun Cho; Katie Cottingham; Michael Dunn; Tomasz Dylag; Ron Edgar; Peter Hare; Albert J R Heck; Roland F Hirsch; Karen Kennedy; Patrik Kolar; Hans-Joachim Kraus; Parag Mallick; Alexey I Nesvizhskii; Peipei Ping; Fredrik Pontén; Liming Yang; John R Yates; Stephen E Stein; Henning Hermjakob; Christopher R Kinsinger; Rolf Apweiler
Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.
Journal of proteome research 2009;8(7):3689-92.
2009: Gautier Koscielny; Vincent Le Texier; Chellappa Gopalakrishnan; Vasudev Kumanduri; Jean-Jack Riethoven; Francesco Nardone; Eleanor Stanley; Christine Fallsehr; Oliver Hofmann; Meelis Kull; Eoghan Harrington; Stéphanie Boué; Eduardo Eyras; Mireya Plass; Fabrice Lopez; William Ritchie; Virginie Moucadel; Takeshi Ara; Heike Pospisil; Alexander Herrmann; Jens G Reich; Roderic Guigó; Peer Bork; Magnus von Knebel Doeberitz; Jaak Vilo; Winston Hide; Rolf Apweiler; Thangavel Alphonse Thanaraj; Daniel Gautheret
ASTD: The Alternative Splicing and Transcript Diversity database.
Genomics 2009;93(3):213-20.
2009: Hartmut Schlüter; Rolf Apweiler; Hermann-Georg Holzhütter; Peter R Jungblut
Finding one's way in proteomics: a protein species nomenclature.
Chemistry Central journal 2009;3():11.
2009: Lennart Martens; Rolf Apweiler
Algorithms and databases.
Methods in molecular biology (Clifton, N.J.) 2009;564():245-59.
2009: Martin Eisenacher; Michael Kohl; Lennart Martens; Harald Barsnes; Tanja Hardt; Fredrik Levander; Jari Häkkinen; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands.
Proteomics 2009;9(2):218-22.
2008: Paul Kersey; David Lonsdale; Nicky J Mulder; Robert Petryszak; Rolf Apweiler
Building a biological space based on protein sequence similarities and biological ontologies.
Combinatorial chemistry & high throughput screening 2008;11(8):653-60.
2008: Richard G Côté; Philip Jones; Lennart Martens; Rolf Apweiler; Henning Hermjakob
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.
Nucleic acids research 2008;36(Web Server issue):W372-6.
2008: Jun Zhang; David A Liem; Michael Mueller; Yueju Wang; Chenggong Zong; Ning Deng; Thomas M Vondriska; Paavo Korge; Oliver Drews; W Robb MacLellan; Henry Honda; James N Weiss; Rolf Apweiler; Peipei Ping
Altered proteome biology of cardiac mitochondria under stress conditions.
Journal of proteome research 2008;7(6):2204-14.
2008: Samuel Patient; Daniela Wieser; Michael Kleen; Ernst Kretschmann; Maria Jesus Martin; Rolf Apweiler
UniProtJAPI: a remote API for accessing UniProt data.
Bioinformatics (Oxford, England) 2008;24(10):1321-2.
2008: Ruth C Lovering; Emily Dimmer; Varsha K Khodiyar; Daniel G Barrell; Peter Scambler; Mike Hubank; Rolf Apweiler; Philippa J Talmud
Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?
Proteomics 2008;8(10):1950-3.
2008: Jun Zhang; Xiaohai Li; Michael Mueller; Yueju Wang; Chenggong Zong; Ning Deng; Thomas M Vondriska; David A Liem; Jeong-In Yang; Paavo Korge; Henry Honda; James N Weiss; Rolf Apweiler; Peipei Ping
Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria.
Proteomics 2008;8(8):1564-75.
2008: Martin Eisenacher; Tanja Hardt; Michael Hamacher; Lennart Martens; Jari Häkkinen; Fredrik Levander; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea.
Proteomics 2008;8(7):1326-30.
2008: Nicola J Mulder; Rolf Apweiler
The InterPro database and tools for protein domain analysis.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2008;Chapter 2():Unit 2.7.
2008: Michael Mueller; Juan Antonio Vizcaino; Philip Jones; Richard Côté; David Thorneycroft; Rolf Apweiler; Henning Hermjakob; Lennart Martens
Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets.
Proteomics 2008;8(6):1138-48.
2008: Nicola Jane Mulder; Paul Kersey; Manuela Pruess; Rolf Apweiler
In silico characterization of proteins: UniProt, InterPro and Integr8.
Molecular biotechnology 2008;38(2):165-77.
2008: Peipei Ping; John Bergeron; Rolf Apweiler
Wiley-VCH and HUPO: A Global Effort to Advance Proteomic Science.
Proteomics. Clinical applications 2008;2(1):4-6.
2008: Andrew Chatr-Aryamontri; Samuel Kerrien; Jyoti Khadake; Sandra Orchard; Arnaud CEOL; Luana Licata; Luisa Castagnoli; Stefano Costa; Cathy Derow; Rachael Huntley; Bruno Aranda; Catherine Leroy; Dave Thorneycroft; Rolf Apweiler; Gianni Cesareni; Henning Hermjakob
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.
Genome biology 2008;9 Suppl 2():S5.
2008: Peter R Jungblut; Hermann G Holzhütter; Rolf Apweiler; Hartmut Schlüter
The speciation of the proteome.
Chemistry Central journal 2008;2():16.
2008: Peipei Ping; John Bergeron; Rolf Apweiler
Wiley-VCH and HUPO: a global effort to advance proteomic science.
Proteomics 2008;8(1):4-6.
2008: Sebastian Klie; Lennart Martens; Juan Antonio Vizcaino; Richard Côté; Philip Jones; Rolf Apweiler; Alexander Hinneburg; Henning Hermjakob
Analyzing large-scale proteomics projects with latent semantic indexing.
Journal of proteome research 2008;7(1):182-91.
2007: Andrew R Jones; Michael Miller; Ruedi Aebersold; Rolf Apweiler; Catherine A Ball; Alvis Brazma; James Degreef; Nigel Hardy; Henning Hermjakob; Simon Hubbard; Peter Hussey; Mark Igra; Helen Jenkins; Randall K Julian; Kent Laursen; Stephen G Oliver; Norman W Paton; Susanna-Assunta Sansone; Ugis Sarkans; Christian J Stoeckert; Christopher Taylor; Patricia L Whetzel; Joseph A White; Paul Spellman; Angel Pizarro
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
Nature biotechnology 2007;25(10):1127-33.
2007: Lennart Martens; Sandra Orchard; Rolf Apweiler; Henning Hermjakob
Human Proteome Organization Proteomics Standards Initiative: data standardization, a view on developments and policy.
Molecular & cellular proteomics : MCP 2007;6(9):1666-7.
2007: Martin Eisenacher; Tanja Hardt; Michael Hamacher; Lennart Martens; Jari Häkkinen; Fredrik Levander; Rolf Apweiler; Helmut E Meyer; Christian Stephan
Proteomics Data Collection - the 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France.
Proteomics 2007;7(17):3034-7.
2007: Christopher Taylor; Norman W Paton; Kathryn S Lilley; Pierre-Alain Binz; Randall K Julian; Andrew R Jones; Weimin Zhu; Rolf Apweiler; Ruedi Aebersold; Eric Deutsch; Michael J Dunn; albert heck; Alexander Leitner; Marcus Macht; Matthias Mann; Lennart Martens; Thomas A Neubert; Scott D Patterson; Peipei Ping; Sean L Seymour; Puneet Souda; Akira Tsugita; Joel Vandekerckhove; Thomas M Vondriska; Julian P Whitelegge; Marc R Wilkins; Ioannnis Xenarios; John R Yates; Henning Hermjakob
The minimum information about a proteomics experiment (MIAPE).
Nature biotechnology 2007;25(8):887-93.
2007: Michael Hamacher; Christian Stephan; Martin Eisenacher; Piotr Lewczuk; Jens Wiltfang; Lennart Martens; Juan Antonio Vizcaino; Kyung-Hoon Kwon; Jong Shin Yoo; Young Mok Park; Johannes Beckers; Marion Horsch; Martin Hrabé De Angelis; Zang-Hee Cho; Rolf Apweiler; Helmut E Meyer
High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop March 7-9, 2007 Wellcome Trust Conference Centre, Hinxton, UK.
Proteomics 2007;7(15):2490-6.
2007: Mischak Harald; Rolf Apweiler; Rosamonde E Banks; Mark Conaway; Joshua Coon; Anna Dominiczak; Jochen H H Ehrich; Danilo Fliser; Mark Girolami; Henning Hermjakob; Denis Hochstrasser; Joachim Jankowski; Bruce A Julian; Walter Kolch; Ziad A Massy; Christian Neusuess; Jan Novak; Karlheinz Peter; Kasper Rossing; Joost Schanstra; O John Semmes; Dan Theodorescu; Visith Thongboonkerd; Eva M Weissinger; Jennifer E Van Eyk; Tadashi Yamamoto
Clinical proteomics: A need to define the field and to begin to set adequate standards.
Proteomics. Clinical applications 2007;1(2):148-56.
2007: Michael Mueller; Lennart Martens; Rolf Apweiler
Annotating the human proteome: beyond establishing a parts list.
Biochimica et biophysica acta 2007;1774(2):175-91.
2007: Peter Sterk; Tamara Kulikova; Paul Kersey; Rolf Apweiler
The EMBL Nucleotide Sequence and Genome Reviews Databases.
Methods in molecular biology (Clifton, N.J.) 2007;406():1-21.
2007: Nicola Mulder; Rolf Apweiler
InterPro and InterProScan: tools for protein sequence classification and comparison.
Methods in molecular biology (Clifton, N.J.) 2007;396():59-70.
2007: Richard G Côté; Philip Jones; Lennart Martens; Samuel Kerrien; Florian Reisinger; Quan Lin; Rasko Leinonen; Rolf Apweiler; Henning Hermjakob
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.
BMC bioinformatics 2007;8():401.
2007: Samuel Kerrien; Sandra Orchard; Luisa Montecchi-Palazzi; Bruno Aranda; Antony F Quinn; Nisha Vinod; Gary Bader; Ioannis Xenarios; Jérôme Wojcik; David Sherman; Mike Tyers; John J Salama; Susan Moore; Arnaud CEOL; Andrew Chatr-Aryamontri; Matthias Oesterheld; Volker Stümpflen; Lukasz Salwinski; Jason Nerothin; Ethan Cerami; Michael E Cusick; Marc Vidal; Michael K Gilson; John Armstrong; Peter Woollard; Christopher Hogue; David Eisenberg; Gianni Cesareni; Rolf Apweiler; Henning Hermjakob
Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.
BMC biology 2007;5():44.
2007: Sandra Orchard; Philip Jones; Chris Taylor; Weimin Zhu; Randall K Julian; Henning Hermjakob; Rolf Apweiler
Proteomic data exchange and storage: the need for common standards and public repositories.
Methods in molecular biology (Clifton, N.J.) 2007;367():261-70.
2007: Samuel Kerrien; Y Alam-Faruque; B Aranda; I Bancarz; A Bridge; C Derow; Emily Dimmer; M Feuermann; A Friedrichsen; R Huntley; C Kohler; Jyoti Khadake; C Leroy; A Liban; C Lieftink; Luisa Montecchi-Palazzi; Sandra Orchard; J Risse; K Robbe; Bernd Roechert; D Thorneycroft; Y Zhang; Rolf Apweiler; Henning Hermjakob
IntAct--open source resource for molecular interaction data.
Nucleic acids research 2007;35(Database issue):D561-5.
2006: Paul Kersey; Rolf Apweiler
Linking publication, gene and protein data.
Nature cell biology 2006;8(11):1183-9.
2006: Christian Stephan; Kai A Reidegeld; Michael Hamacher; Andre van Hall; Katrin Marcus; Chris Taylor; Philip Jones; Michael Müller; Rolf Apweiler; Lennart Martens; Gerhard Körting; Daniel C Chamrad; Herbert Thiele; Martin Blüggel; David Parkinson; Pierre-Alain Binz; Andrew Lyall; Helmut E Meyer
Automated reprocessing pipeline for searching heterogeneous mass spectrometric data of the HUPO Brain Proteome Project pilot phase.
Proteomics 2006;6(18):5015-29.
2006: Kai A Reidegeld; Michael Müller; Christian Stephan; Martin Blüggel; Michael Hamacher; Lennart Martens; Gerhard Körting; Daniel C Chamrad; David Parkinson; Rolf Apweiler; Helmut E Meyer; Katrin Marcus
The power of cooperative investigation: summary and comparison of the HUPO Brain Proteome Project pilot study results.
Proteomics 2006;6(18):4997-5014.
2006: Lennart Martens; Michael Müller; Christian Stephan; Michael Hamacher; Kai A Reidegeld; Helmut E Meyer; Martin Blüggel; Joël Vandekerckhove; Kris Gevaert; Rolf Apweiler
A comparison of the HUPO Brain Proteome Project pilot with other proteomics studies.
Proteomics 2006;6(18):5076-86.
2006: Michael Mueller; Lennart Martens; Kai A Reidegeld; Michael Hamacher; Christian Stephan; Martin Blüggel; Gerhard Körting; Daniel C Chamrad; Christian Scheer; Katrin Marcus; Helmut E Meyer; Rolf Apweiler
Functional annotation of proteins identified in human brain during the HUPO Brain Proteome Project pilot study.
Proteomics 2006;6(18):5059-75.
2006: Daniel C Chamrad; Gerhard Körting; Heike Schäfer; Christian Stephan; Herbert Thiele; Rolf Apweiler; Helmut E Meyer; Katrin Marcus; Martin Blüggel
Gaining knowledge from previously unexplained spectra-application of the PTM-Explorer software to detect PTM in HUPO BPP MS/MS data.
Proteomics 2006;6(18):5048-58.
2006: Eleanor J Whitfield; Manuela Pruess; Rolf Apweiler
Bioinformatics database infrastructure for biotechnology research.
Journal of biotechnology 2006;124(4):629-39.
2006: Sandra Orchard; Rolf Apweiler; Robert Barkovich; Dawn Field; John S Garavelli; David Horn; Andy Jones; Philip Jones; Randall K Julian; ruth mcnally; Jason Nerothin; Norman Paton; Angel Pizarro; Sean Seymour; Chris Taylor; Stefan Wiemann; Henning Hermjakob
Proteomics and Beyond: a report on the 3rd Annual Spring Workshop of the HUPO-PSI 21-23 April 2006, San Francisco, CA, USA.
Proteomics 2006;6(16):4439-43.
2006: Rasko Leinonen; Francesco Nardone; Weimin Zhu; Rolf Apweiler
UniSave: the UniProtKB sequence/annotation version database.
Bioinformatics (Oxford, England) 2006;22(10):1284-5.
2006: Michael Hamacher; Christian Stephan; Martin Blüggel; Daniel C Chamrad; Gerhard Körting; Lennart Martens; Michael Müller; Henning Hermjakob; David Parkinson; Andrew W Dowsey; Kai A Reidegeld; Katrin Marcus; Michael J Dunn; Helmut E Meyer; Rolf Apweiler
The HUPO Brain Proteome Project jamboree: centralised summary of the pilot studies.
Proteomics 2006;6(6):1719-21.
2006: Henning Hermjakob; Rolf Apweiler
The Proteomics Identifications Database (PRIDE) and the ProteomExchange Consortium: making proteomics data accessible.
Expert review of proteomics 2006;3(1):1-3.
2006: Sandra Orchard; Henning Hermjakob; Chris Taylor; Pierre-Alain Binz; Christine Hoogland; Randall K Julian; John S Garavelli; Ruedi Aebersold; Rolf Apweiler
Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4-6, 2005.
Proteomics 2006;6(3):738-41.
2006: Francisco M Couto; Mário Silva; Vivian Lee; Emily Dimmer; Evelyn Camon; Rolf Apweiler; Harald Kirsch; Dietrich Rebholz-Schuhmann
GOAnnotator: linking protein GO annotations to evidence text.
Journal of biomedical discovery and collaboration 2006;1():19.
2006: Manuela Pruess; Paul Kersey; Tamara Kulikova; Rolf Apweiler
Databases and resources for in silico proteome analysis.
Methods of biochemical analysis 2006;49():397-414.
2006: Christopher Taylor; Henning Hermjakob; Randall K Julian; John S Garavelli; Ruedi Aebersold; Rolf Apweiler
The work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI).
Omics : a journal of integrative biology 2006;10(2):145-51.
2006: Peter Sterk; Paul Kersey; Rolf Apweiler
Genome Reviews: standardizing content and representation of information about complete genomes.
Omics : a journal of integrative biology 2006;10(2):114-8.
2006: Guy Cochrane; Kirsty Bates; Rolf Apweiler; Yoshio Tateno; Jun Mashima; Takehide Kosuge; Ilene Karsch Mizrachi; Susan Schafer; Michael Fetchko
Evidence standards in experimental and inferential INSDC Third Party Annotation data.
Omics : a journal of integrative biology 2006;10(2):105-13.
2006: Richard G Côté; Philip Jones; Rolf Apweiler; Henning Hermjakob
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.
BMC bioinformatics 2006;7():97.
2006: Philip Jones; Richard G Côté; Lennart Martens; Antony F Quinn; Christopher Taylor; William Derache; Henning Hermjakob; Rolf Apweiler
PRIDE: a public repository of protein and peptide identifications for the proteomics community.
Nucleic acids research 2006;34(Database issue):D659-63.
2006: Cathy H Wu; Rolf Apweiler; Amos Bairoch; Darren A Natale; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Raja Mazumder; Claire O'Donovan; Nicole Redaschi; Baris E Suzek
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic acids research 2006;34(Database issue):D187-91.
2005: Sandra Orchard; Henning Hermjakob; Chris Taylor; Ruedi Aebersold; Rolf Apweiler
Human Proteome Organisation Proteomics Standards Initiative. Pre-Congress Initiative.
Proteomics 2005;5(18):4651-2.
2005: christian blaschke; Alexander S Yeh; Evelyn Camon; Marc Colosimo; Rolf Apweiler; Lynette Hirschman; Carmen Galvez
Do you do text?
Bioinformatics (Oxford, England) 2005;21(23):4199-200.
2005: Robert Petryszak; Ernst Kretschmann; Daniela Wieser; Rolf Apweiler
The predictive power of the CluSTr database.
Bioinformatics (Oxford, England) 2005;21(18):3604-9.
2005: Christian Stephan; Michael Hamacher; Martin Blüggel; Gerhard Körting; Daniel C Chamrad; Christian Scheer; Katrin Marcus; Kai A Reidegeld; Christiane Lohaus; Heike Schäfer; Lennart Martens; Philip Jones; Michael Müller; Kevin Auyeung; Chris Taylor; Pierre-Alain Binz; Herbert Thiele; David Parkinson; Helmut E Meyer; Rolf Apweiler
5th HUPO BPP Bioinformatics Meeting at the European Bioinformatics Institute in Hinxton, UK--Setting the analysis frame.
Proteomics 2005;5(14):3560-2.
2005: Sandra Orchard; Henning Hermjakob; Christopher Taylor; Frank Potthast; Philip Jones; Weimin Zhu; Randall K Julian; Rolf Apweiler
Further steps in standardisation. Report of the second annual Proteomics Standards Initiative Spring Workshop (Siena, Italy 17-20th April 2005).
Proteomics 2005;5(14):3552-5.
2005: Lennart Martens; Henning Hermjakob; Philip Jones; Marcin Adamski; Chris Taylor; David States; Kris Gevaert; Joël Vandekerckhove; Rolf Apweiler
PRIDE: the proteomics identifications database.
Proteomics 2005;5(13):3537-45.
2005: Philip Jones; Nisha Vinod; Thomas A Down; Andre Hackmann; Andreas Kahari; Ernst Kretschmann; Antony Quinn; Daniela Wieser; Henning Hermjakob; Rolf Apweiler
Dasty and UniProt DAS: a perfect pair for protein feature visualization.
Bioinformatics (Oxford, England) 2005;21(14):3198-9.
2005: Emmanuel Quevillon; Ville Silventoinen; S Pillai; Nicola Harte; Nicola Mulder; Rolf Apweiler; Rodrigo Lopez
InterProScan: protein domains identifier.
Nucleic acids research 2005;33(Web Server issue):W116-20.
2005: Sandra Orchard; Henning Hermjakob; Christopher Taylor; Frank Potthast; Philip Jones; Weimin Zhu; Randall K Julian; Rolf Apweiler
Second proteomics standards initiative spring workshop.
Expert review of proteomics 2005;2(3):287-9.
2005: Michel Schneider; Amos Bairoch; Cathy H Wu; Rolf Apweiler
Plant protein annotation in the UniProt Knowledgebase.
Plant physiology 2005;138(1):59-66.
2005: Sandra Orchard; Henning Hermjakob; Rolf Apweiler
Annotating the human proteome.
Molecular & cellular proteomics : MCP 2005;4(4):435-40.
2005: Sandra Orchard; Henning Hermjakob; Pierre-Alain Binz; Christine Hoogland; Christopher Taylor; Weimin Zhu; Randall K Julian; Rolf Apweiler
Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004.
Proteomics 2005;5(2):337-9.
2005: Manuela Pruess; Paul Kersey; Rolf Apweiler
The Integr8 project--a resource for genomic and proteomic data.
In silico biology 2005;5(2):179-85.
2005: Vivian Lee; Evelyn Camon; Emily Dimmer; Daniel Barrell; Rolf Apweiler
Who tangos with GOA?-Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools.
In silico biology 2005;5(1):5-8.
2005: Evelyn Camon; Daniel Barrell; Emily Dimmer; Vivian Lee; Michele Magrane; John Maslen; David Binns; Rolf Apweiler
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
BMC bioinformatics 2005;6 Suppl 1():S17.
2005: Sandra Orchard; Luisa Montecchi-Palazzi; Henning Hermjakob; Rolf Apweiler
The use of common ontologies and controlled vocabularies to enable data exchange and deposition for complex proteomic experiments.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2005;():186-96.
2005: Rolf Apweiler; Athel Cornish-Bowden; J H S Hofmeyr; Carsten Kettner; Thomas S Leyh; Dietmar Schomburg; Keith Tipton
The importance of uniformity in reporting protein-function data.
Trends in biochemical sciences 2005;30(1):11-2.
2005: Paul Kersey; Lawrence Bower; Lorna Morris; Alan Horne; Robert Petryszak; Carola Kanz; Alexander Kanapin; Ujjwal Das; Karine Michoud; Isabelle Phan; Alexandre Gattiker; Tamara Kulikova; Nadeem Faruque; Karyn Duggan; Peter Mclaren; Britt Reimholz; Laurent Duret; Simon Penel; Ingmar Reuter; Rolf Apweiler
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
Nucleic acids research 2005;33(Database issue):D297-302.
2005: Sameer Velankar; P McNeil; V Mittard-Runte; A Suarez; Daniel Barrell; Rolf Apweiler; Kim Henrick
E-MSD: an integrated data resource for bioinformatics.
Nucleic acids research 2005;33(Database issue):D262-5.
2005: Amos Bairoch; Rolf Apweiler; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
The Universal Protein Resource (UniProt).
Nucleic acids research 2005;33(Database issue):D154-9.
2004: Rasko Leinonen; Federico Garcia Diez; David Binns; Wolfgang Fleischmann; Rodrigo Lopez; Rolf Apweiler
UniProt archive.
Bioinformatics (Oxford, England) 2004;20(17):3236-7.
2004: Patrick G A Pedrioli; Jimmy K Eng; Robert Hubley; Mathijs Vogelzang; Eric Deutsch; Brian Raught; Brian Pratt; Erik Nilsson; Ruth Hogue Angeletti; Rolf Apweiler; Kei Cheung; Catherine E Costello; Henning Hermjakob; Sequin Huang; Randall K Julian; Eugene Kapp; Mark E McComb; Stephen G Oliver; Gilbert S Omenn; Norman W Paton; Richard Simpson; Richard Smith; Christopher Taylor; Weimin Zhu; Ruedi Aebersold
A common open representation of mass spectrometry data and its application to proteomics research.
Nature biotechnology 2004;22(11):1459-66.
2004: Daniela Wieser; Ernst Kretschmann; Rolf Apweiler
Filtering erroneous protein annotation.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i342-7.
2004: Sandra Orchard; Chris Taylor; Henning Hermjakob; Weimin Zhu; Randall K Julian; Rolf Apweiler
Current status of proteomic standards development.
Expert review of proteomics 2004;1(2):179-83.
2004: Sandra Orchard; Christopher Taylor; Henning Hermjakob; Randall K Julian; Rolf Apweiler
Advances in the development of common interchange standards for proteomic data.
Proteomics 2004;4(8):2363-5.
2004: Martin Blüggel; Sonja Bailey; Gerhard Körting; Christian Stephan; Kai A Reidegeld; Herbert Thiele; Rolf Apweiler; Michael Hamacher; Helmut E Meyer
Towards data management of the HUPO Human Brain Proteome Project pilot phase.
Proteomics 2004;4(8):2361-2.
2004: Paul Kersey; Jorge Duarte; Allyson Williams; Youla Karavidopoulou; Ewan Birney; Rolf Apweiler
The International Protein Index: an integrated database for proteomics experiments.
Proteomics 2004;4(7):1985-8.
2004: Rolf Apweiler; Amos Bairoch; Cathy H Wu
Protein sequence databases.
Current opinion in chemical biology 2004;8(1):76-80.
2004: Sandra Orchard; Henning Hermjakob; Randall K Julian; Kai Runte; David Sherman; Jérôme Wojcik; Weimin Zhu; Rolf Apweiler
Common interchange standards for proteomics data: Public availability of tools and schema.
Proteomics 2004;4(2):490-1.
2004: Maria Jesus Martin; Claire O'Donovan; Rolf Apweiler
Protein sequence database methods.
Genetic engineering 2004;26():13-7.
2004: Evelyn Camon; Daniel Barrell; Vivian Lee; Emily Dimmer; Rolf Apweiler
The Gene Ontology Annotation (GOA) Database--an integrated resource of GO annotations to the UniProt Knowledgebase.
In silico biology 2004;4(1):5-6.
2004: Henning Hermjakob; Luisa Montecchi-Palazzi; Chris Lewington; Sugath Mudali; Samuel Kerrien; Sandra Orchard; Martin Vingron; Bernd Roechert; Peter Roepstorff; Alfonso Valencia; Hanah Margalit; John Armstrong; Amos Bairoch; Gianni Cesareni; David Sherman; Rolf Apweiler
IntAct: an open source molecular interaction database.
Nucleic acids research 2004;32(Database issue):D452-5.
2004: Astrid Fleischmann; Michael Darsow; Kirill Degtyarenko; Wolfgang Fleischmann; Sinéad Boyce; Kristian B Axelsen; Amos Bairoch; Dietmar Schomburg; Keith F Tipton; Rolf Apweiler
IntEnz, the integrated relational enzyme database.
Nucleic acids research 2004;32(Database issue):D434-7.
2004: Evelyn Camon; Michele Magrane; Daniel Barrell; Vivian Lee; Emily Dimmer; John Maslen; David Binns; Nicola Harte; Rodrigo Lopez; Rolf Apweiler
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
Nucleic acids research 2004;32(Database issue):D262-6.
2004: Rolf Apweiler; Amos Bairoch; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
UniProt: the Universal Protein knowledgebase.
Nucleic acids research 2004;32(Database issue):D115-9.
2004: Tamara Kulikova; Philippe Aldebert; Nicola Althorpe; Wendy Baker; Kirsty Bates; Paul Browne; Alexandra van den Broek; Guy Cochrane; Karyn Duggan; Ruth Eberhardt; Nadeem Faruque; Maria Garcia-Pastor; Nicola Harte; Carola Kanz; Rasko Leinonen; Quan Lin; Vincent Lombard; Rodrigo Lopez; Renato Mancuso; Michelle McHale; Francesco Nardone; Ville Silventoinen; Peter Stoehr; Guenter Stoesser; Mary Ann Tuli; Katerina Tzouvara; Robert Vaughan; Dan Wu; Weimin Zhu; Rolf Apweiler
The EMBL Nucleotide Sequence Database.
Nucleic acids research 2004;32(Database issue):D27-30.
2003: Sandra Orchard; Weimin Zhu; Randall K Julian; Henning Hermjakob; Rolf Apweiler
Further advances in the development of a data interchange standard for proteomics data.
Proteomics 2003;3(10):2065-6.
2003: Sandra Orchard; Henning Hermjakob; Rolf Apweiler
The proteomics standards initiative.
Proteomics 2003;3(7):1374-6.
2003: Rolf Apweiler; Maria J Martin; Claire O'Donovan; Manuela Pruess
Managing core resources for genomics and proteomics.
Pharmacogenomics 2003;4(3):343-50.
2003: Evelyn Camon; Michele Magrane; Daniel Barrell; David Binns; Wolfgang Fleischmann; Paul Kersey; Nicola Mulder; Tom Oinn; John Maslen; Anthony Cox; Rolf Apweiler
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.
Genome research 2003;13(4):662-72.
2003: Evgenia Kriventseva; Ina Koch; Rolf Apweiler; Martin Vingron; Peer Bork; Mikhail S Gelfand; Shamil Sunyaev
Increase of functional diversity by alternative splicing.
Trends in genetics : TIG 2003;19(3):124-8.
2003: Sandra Orchard; Paul Kersey; Weimin Zhu; Luisa Montecchi-Palazzi; Henning Hermjakob; Rolf Apweiler
Progress in Establishing Common Standards for Exchanging Proteomics Data: The Second Meeting of the HUPO Proteomics Standards Initiative.
Comparative and functional genomics 2003;4(2):203-6.
2003: Evelyn Camon; Daniel Barrell; Catherine Brooksbank; Michele Magrane; Rolf Apweiler
The Gene Ontology Annotation (GOA) Project--Application of GO in SWISS-PROT, TrEMBL and InterPro.
Comparative and functional genomics 2003;4(1):71-4.
2003: Sandra Orchard; Paul Kersey; Henning Hermjakob; Rolf Apweiler
The HUPO Proteomics Standards Initiative Meeting: Towards Common Standards for Exchanging Proteomics Data.
Comparative and functional genomics 2003;4(1):16-9.
2003: Paul Kersey; L Morris; Henning Hermjakob; Rolf Apweiler
Integr8: enhanced inter-operability of European molecular biology databases.
Methods of information in medicine 2003;42(2):154-60.
2003: Manuela Pruess; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.
Nucleic acids research 2003;31(1):414-7.
2003: Evgenia Kriventseva; Florence Servant; Rolf Apweiler
Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.
Nucleic acids research 2003;31(1):388-9.
2003: Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic acids research 2003;31(1):365-70.
2003: Catherine Brooksbank; Evelyn Camon; Midori A Harris; Michele Magrane; Maria J Martin; Nicola Mulder; Claire O'Donovan; Helen Parkinson; Mary Ann Tuli; Rolf Apweiler; Ewan Birney; Alvis Brazma; Kim Henrick; Rodrigo Lopez; Guenter Stoesser; Peter Stoehr; Graham Cameron
The European Bioinformatics Institute's data resources.
Nucleic acids research 2003;31(1):43-50.
2002: Margaret Biswas; John F O'Rourke; Evelyn Camon; Gill Fraser; Alexander Kanapin; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Isabelle Phan; Florence Servant; Rolf Apweiler
Applications of InterPro in protein annotation and genome analysis.
Briefings in bioinformatics 2002;3(3):285-95.
2002: Claire O'Donovan; Maria J Martin; Alexandre Gattiker; Elisabeth Gasteiger; Amos Bairoch; Rolf Apweiler
High-quality protein knowledge resource: SWISS-PROT and TrEMBL.
Briefings in bioinformatics 2002;3(3):275-84.
2002: Evgeny M Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold
The EBI SRS server-new features.
Bioinformatics (Oxford, England) 2002;18(8):1149-50.
2002: Alexander Kanapin; Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Tom Oinn; Isabelle Phan; Florence Servant; Evgeny M Zdobnov
Interactive InterPro-based comparisons of proteins in whole genomes.
Bioinformatics (Oxford, England) 2002;18(2):374-5.
2002: Evgeny M Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold
The EBI SRS server--recent developments.
Bioinformatics (Oxford, England) 2002;18(2):368-73.
2002: Henning Hermjakob; Rolf Apweiler
TEMBLOR - Perspectives of EBI Database Services.
Comparative and functional genomics 2002;3(1):47-50.
2002: Nicola J Mulder; Rolf Apweiler
Tools and resources for identifying protein families, domains and motifs.
Genome biology 2002;3(1):REVIEWS2001.
2001: Ernst Kretschmann; Wolfgang Fleischmann; Rolf Apweiler
Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.
Bioinformatics (Oxford, England) 2001;17(10):920-6.
2001: Evgeny M Zdobnov; Rolf Apweiler
InterProScan--an integration platform for the signature-recognition methods in InterPro.
Bioinformatics (Oxford, England) 2001;17(9):847-8.
2001: S Möller; Michael D R Croning; Rolf Apweiler
Evaluation of methods for the prediction of membrane spanning regions.
Bioinformatics (Oxford, England) 2001;17(7):646-53.
2001: Margaret Biswas; Alexander Kanapin; Rolf Apweiler
Application of InterPro for the functional classification of the proteins of fish origin in SWISS-PROT and TrEMBL.
Journal of biosciences 2001;26(2):277-84.
2001: Evgenia Kriventseva; Margaret Biswas; Rolf Apweiler
Clustering and analysis of protein families.
Current opinion in structural biology 2001;11(3):334-9.
2001: Claire O'Donovan; Rolf Apweiler; Amos Bairoch
The human proteomics initiative (HPI).
Trends in biotechnology 2001;19(5):178-81.
2001: Rolf Apweiler
Functional information in SWISS-PROT: the basis for large-scale characterisation of protein sequences.
Briefings in bioinformatics 2001;2(1):9-18.
2001: Rolf Apweiler; Margaret Biswas; Wolfgang Fleischmann; Alexander Kanapin; Youla Karavidopoulou; Paul Kersey; Evgenia Kriventseva; Virginie Mittard; Nicola Mulder; Isabelle Phan; Evgeny M Zdobnov
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.
Nucleic acids research 2001;29(1):44-8.
2001: Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; F Corpet; Michael D R Croning; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Jérôme Gouzy; Henning Hermjakob; Nicolas Hulo; Inge Jonassen; Daniel Kahn; Alexander Kanapin; Youla Karavidopoulou; Rodrigo Lopez; B Marx; Nicola Mulder; Tom Oinn; Marco Pagni; Florence Servant; Christian J A Sigrist; Evgeny M Zdobnov
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic acids research 2001;29(1):37-40.
2001: Evgenia Kriventseva; Wolfgang Fleischmann; Evgeny M Zdobnov; Rolf Apweiler
CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.
Nucleic acids research 2001;29(1):33-6.
2000: Rolf Apweiler; Teresa K Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; F Corpet; Michael D R Croning; Richard Durbin; Laurent Falquet; Wolfgang Fleischmann; Jérôme Gouzy; Henning Hermjakob; Nicolas Hulo; Inge Jonassen; Daniel Kahn; Alexander Kanapin; Youla Karavidopoulou; Rodrigo Lopez; B Marx; Nicola Mulder; Tom Oinn; Marco Pagni; Florence Servant; Christian J A Sigrist; Evgeny M Zdobnov
InterPro--an integrated documentation resource for protein families, domains and functional sites.
Bioinformatics (Oxford, England) 2000;16(12):1145-50.
2000: Paul Kersey; Henning Hermjakob; Rolf Apweiler
VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL.
Bioinformatics (Oxford, England) 2000;16(11):1048-9.
2000: K M Menne; Henning Hermjakob; Rolf Apweiler
A comparison of signal sequence prediction methods using a test set of signal peptides.
Bioinformatics (Oxford, England) 2000;16(8):741-2.
2000: VL Junker; Sergio Contrino; Wolfgang Fleischmann; Henning Hermjakob; F Lang; Michele Magrane; Maria J Martin; N Mitaritonna; Claire O'Donovan; Rolf Apweiler
The role SWISS-PROT and TrEMBL play in the genome research environment.
Journal of biotechnology 2000;78(3):221-34.
2000: Michele Magrane; Rolf Apweiler
Mus musculus in the SWISS-PROT database: its relevance to developmental research.
Genesis (New York, N.Y. : 2000) 2000;26(1):1-4.
2000: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Nucleic acids research 2000;28(1):45-8.
1999: Rolf Apweiler; Henning Hermjakob; N Sharon
On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database.
Biochimica et biophysica acta 1999;1473(1):4-8.
1999: VL Junker; Rolf Apweiler; Amos Bairoch
Representation of functional information in the SWISS-PROT data bank.
Bioinformatics (Oxford, England) 1999;15(12):1066-7.
1999: Henning Hermjakob; Wolfgang Fleischmann; Rolf Apweiler
Swissknife - 'lazy parsing' of SWISS-PROT entries.
Bioinformatics (Oxford, England) 1999;15(9):771-2.
1999: Claire O'Donovan; Maria J Martin; E Glemet; J J Codani; Rolf Apweiler
Removing redundancy in SWISS-PROT and TrEMBL.
Bioinformatics (Oxford, England) 1999;15(3):258-9.
1999: Wolfgang Fleischmann; S Möller; Alain Gateau; Rolf Apweiler
A novel method for automatic functional annotation of proteins.
Bioinformatics (Oxford, England) 1999;15(3):228-33.
1999: S Möller; U Leser; Wolfgang Fleischmann; Rolf Apweiler
EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation.
Bioinformatics (Oxford, England) 1999;15(3):219-27.
1999: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.
Nucleic acids research 1999;27(1):49-54.
1998: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
Nucleic acids research 1998;26(1):38-42.
1997: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence database: its relevance to human molecular medical research.
Journal of molecular medicine (Berlin, Germany) 1997;75(5):312-6.
1997: Rolf Apweiler; Alain Gateau; Sergio Contrino; Maria J Martin; VL Junker; Claire O'Donovan; F Lang; N Mitaritonna; S Kappus; Amos Bairoch
Protein sequence annotation in the genome era: the annotation concept of SWISS-PROT+TREMBL.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():33-43.
1997: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
Nucleic acids research 1997;25(1):31-6.
1996: Amos Bairoch; Rolf Apweiler
The SWISS-PROT protein sequence data bank and its new supplement TREMBL.
Nucleic acids research 1996;24(1):21-5.
1993: S Kappus; Rolf Apweiler; C J White; WJ Whish
In vitro poly-(ADP-ribosyl)ation of chromatin proteins in the rat tapeworm, Hymenolepis diminuta.
Comparative biochemistry and physiology. B, Comparative biochemistry 1993;104(4):711-6.
1990: M Alsharif; Rolf Apweiler; WJ Whish; C J Branford White; R V Brunt
Identification of ADPR-transferase activity in the rat tapeworm, Hymenolepis diminuta.
Comparative biochemistry and physiology. B, Comparative biochemistry 1990;96(3):527-31.