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Brandon Gaut

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Living Beings

Phenomena

Molecular Evolution

Genes & Molecular Sequences

Concepts & Ideas

Chemicals & Drugs

Procedures

Chromosome Mapping

Physiology

Anatomy

Plant Chromosomes

Occupations

Population Genetics

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Network (preview)

Co-Publications
Name
11
Doebley, John
10
Clegg, Michael
8
McMullen, Michael
7
Ross-Ibarra, Jeffrey
6
Tenaillon, Maud
6
Wright, Stephen
6
Peek, Andrew
5
Morton, Brian
5
Muse, SV
4
Anderson, Lorinda
4
Buckler, Edward
3
Kresovich, Stephen
3
Rizzon, Carene
3
Sawkins, Mark
3
Mondragon Palomino, Mariana

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Publications

TOP 3
Zhang Lin-Bin; Zhu Qihui; Wu Zhi-Qiang; Ross-Ibarra Jeffrey; Gaut Brandon S; Ge Song; Sang Tao
Selection on grain shattering genes and rates of rice domestication.
Hollister Jesse D; Gaut Brandon S
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.
Ross-Ibarra Jeffrey; Tenaillon Maud; Gaut Brandon S
Historical divergence and gene flow in the genus Zea.

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All Publications

2009: Zhang Lin-Bin; Zhu Qihui; Wu Zhi-Qiang; Ross-Ibarra Jeffrey; Gaut Brandon S; Ge Song; Sang Tao
Selection on grain shattering genes and rates of rice domestication.
The New phytologist 2009;184(3):708-20.
2009: Hollister Jesse D; Gaut Brandon S
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.
Genome research 2009;19(8):1419-28.
2009: Ross-Ibarra Jeffrey; Tenaillon Maud; Gaut Brandon S
Historical divergence and gene flow in the genus Zea.
Genetics 2009;181(4):1399-413.
2009: Lockton Steven; Gaut Brandon S
The contribution of transposable elements to expressed coding sequence in Arabidopsis thaliana.
Journal of molecular evolution 2009;68(1):80-9.
2008: Ross-Ibarra Jeffrey; Gaut Brandon S
Multiple domestications do not appear monophyletic.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(49):E105; author reply E106.
2008: Lockton Steven; Ross-Ibarra Jeffrey; Gaut Brandon S
Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(37):13965-70.
2008: Foxe John Paul; Dar Vaqaar-un-Nisa; Zheng Honggang; Nordborg Magnus; Gaut Brandon S; Wright Stephen I
Selection on amino acid substitutions in Arabidopsis.
Molecular biology and evolution 2008;25(7):1375-83.
2008: Gaut Brandon S; Ross-Ibarra Jeffrey
Selection on major components of angiosperm genomes.
Science (New York, N.Y.) 2008;320(5875):484-6.
2008: Thuillet Anne-Céline; Tenaillon Maud I; Anderson Lorinda K; Mitchell Sharon E; Kresovich Stephen; Stack Stephen M; Gaut Brandon; Doebley John
A weak effect of background selection on trinucleotide microsatellites in maize.
The Journal of heredity 2008;99(1):45-55.
2008: Sweredoski Michael; DeRose-Wilson Leah; Gaut Brandon S
A comparative computational analysis of nonautonomous helitron elements between maize and rice.
BMC genomics 2008;9():467.
2008: Ross-Ibarra Jeffrey; Wright Stephen I; Foxe John Paul; Kawabe Akira; DeRose-Wilson Leah; Gos Gesseca; Charlesworth Deborah; Gaut Brandon S
Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata.
PloS one 2008;3(6):e2411.
2007: Briggs William H; McMullen Michael D; Gaut Brandon S; Doebley John
Linkage mapping of domestication loci in a large maize teosinte backcross resource.
Genetics 2007;177(3):1915-28.
2007: Hollister Jesse D; Gaut Brandon S
Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana.
Molecular biology and evolution 2007;24(11):2515-24.
2007: Hufford Kristina M; Canaran Payan; Ware Doreen H; McMullen Michael D; Gaut Brandon S
Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci.
Plant physiology 2007;144(3):1642-53.
2007: Wang Nan; Baldi Pierre F; Gaut Brandon S
Phylogenetic analysis, genome evolution and the rate of gene gain in the Herpesviridae.
Molecular phylogenetics and evolution 2007;43(3):1066-75.
2007: Ross-Ibarra Jeffrey; Morrell Peter L; Gaut Brandon S
Plant domestication, a unique opportunity to identify the genetic basis of adaptation.
Proceedings of the National Academy of Sciences of the United States of America 2007;104 Suppl 1():8641-8.
2007: Zhu Qihui; Zheng Xiaoming; Luo Jingchu; Gaut Brandon S; Ge Song
Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice.
Molecular biology and evolution 2007;24(3):875-88.
2007: Gaut Brandon S; Wright Stephen I; Rizzon Carène; Dvorak Jan; Anderson Lorinda K
Recombination: an underappreciated factor in the evolution of plant genomes.
Nature reviews. Genetics 2007;8(1):77-84.
2007: Ellis Allan G; Weis Arthur E; Gaut Brandon S
Spatial scale of local adaptation and population genetic structure in a miniature succulent, Argyroderma pearsonii.
The New phytologist 2007;174(4):904-14.
2007: DeRose-Wilson Leah J; Gaut Brandon S
Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata.
BMC evolutionary biology 2007;7():66.
2006: Doebley John F; Gaut Brandon S; Smith Bruce D
The molecular genetics of crop domestication.
Cell 2006;127(7):1309-21.
2006: Wright Stephen I; Foxe John Paul; DeRose-Wilson Leah; Kawabe Akira; Looseley Mark; Gaut Brandon S; Charlesworth Deborah
Testing for effects of recombination rate on nucleotide diversity in natural populations of Arabidopsis lyrata.
Genetics 2006;174(3):1421-30.
2006: Rizzon Carene; Ponger Loic; Gaut Brandon S
Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice.
PLoS computational biology 2006;2(9):e115.
2006: Mishmar Dan; Ruiz-Pesini Eduardo; Mondragon-Palomino Mariana; Procaccio Vincent; Gaut Brandon; Wallace Douglas C
Adaptive selection of mitochondrial complex I subunits during primate radiation.
Gene 2006;378():11-8.
2006: Good-Avila Sara V; Souza Valeria; Gaut Brandon S; Eguiarte Luis E
Timing and rate of speciation in Agave (Agavaceae).
Proceedings of the National Academy of Sciences of the United States of America 2006;103(24):9124-9.
2006: Buckler Edward S; Gaut Brandon S; McMullen Michael D
Molecular and functional diversity of maize.
Current opinion in plant biology 2006;9(2):172-6.
2006: Yu Jianming; Pressoir Gael; Briggs William H; Vroh Bi Irie; Yamasaki Masanori; Doebley John F; McMullen Michael D; Gaut Brandon S; Nielsen Dahlia M; Holland James B; Kresovich Stephen; Buckler Edward S
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness.
Nature genetics 2006;38(2):203-8.
2006: Ellis Allan G; Weis Arthur E; Gaut Brandon S
Evolutionary radiation of "stone plants" in the genus Argyroderma (Aizoaceae): unraveling the effects of landscape, habitat, and flowering time.
Evolution; international journal of organic evolution 2006;60(1):39-55.
2006: Zhao Wei; Canaran Payan; Jurkuta Rebecca; Fulton Theresa; Glaubitz Jeffrey; Buckler Edward; Doebley John; Gaut Brandon; Goodman Major; Holland Jim; Kresovich Stephen; McMullen Michael; Stein Lincoln; Ware Doreen
Panzea: a database and resource for molecular and functional diversity in the maize genome.
Nucleic acids research 2006;34(Database issue):D752-7.
2006: Anderson Lorinda K; Lai Ann; Stack Stephen M; Rizzon Carene; Gaut Brandon S
Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes.
Genome research 2006;16(1):115-22.
2006: Morton Brian R; Bi Irie V; McMullen Michael D; Gaut Brandon S
Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition.
Genetics 2006;172(1):569-77.
2005: Mondragon-Palomino Mariana; Gaut Brandon S
Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana.
Molecular biology and evolution 2005;22(12):2444-56.
2005: Yamasaki Masanori; Tenaillon Maud I; Bi Irie Vroh; Schroeder Steve G; Sanchez-Villeda Hector; Doebley John F; Gaut Brandon S; McMullen Michael D
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement.
The Plant cell 2005;17(11):2859-72.
2005: Wright Stephen I; Bi Irie Vroh; Schroeder Steve G; Yamasaki Masanori; Doebley John F; McMullen Michael D; Gaut Brandon S
The effects of artificial selection on the maize genome.
Science (New York, N.Y.) 2005;308(5726):1310-4.
2005: Wright Stephen I; Gaut Brandon S
Molecular population genetics and the search for adaptive evolution in plants.
Molecular biology and evolution 2005;22(3):506-19.
2005: Lockton Steven; Gaut Brandon S
Plant conserved non-coding sequences and paralogue evolution.
Trends in genetics : TIG 2005;21(1):60-5.
2004: Tiffin Peter; Hacker Robert; Gaut Brandon S
Population genetic evidence for rapid changes in intraspecific diversity and allelic cycling of a specialist defense gene in Zea.
Genetics 2004;168(1):425-34.
2004: Tenaillon Maud I; U'Ren Jana; Tenaillon Olivier; Gaut Brandon S
Selection versus demography: a multilocus investigation of the domestication process in maize.
Molecular biology and evolution 2004;21(7):1214-25.
2003: McLysaght Aoife; Baldi Pierre F; Gaut Brandon S
Extensive gene gain associated with adaptive evolution of poxviruses.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(26):15655-60.
2003: Zhang Liqing; Gaut Brandon S
Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome?
Genome research 2003;13(12):2533-40.
2003: Gaut Brandon S; Long Anthony D
The lowdown on linkage disequilibrium.
The Plant cell 2003;15(7):1502-6.
2003: Hampson Steve; McLysaght Aoife; Gaut Brandon; Baldi Pierre
LineUp: statistical detection of chromosomal homology with application to plant comparative genomics.
Genome research 2003;13(5):999-1010.
2002: Tenaillon Maud I; Sawkins Mark C; Anderson Lorinda K; Stack Stephen M; Doebley John; Gaut Brandon S
Patterns of diversity and recombination along chromosome 1 of maize (Zea mays ssp. mays L.).
Genetics 2002;162(3):1401-13.
2002: Zhang Liqing; Peek Andrew S; Dunams Detiger; Gaut Brandon S
Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis).
Genetics 2002;162(2):851-60.
2002: Whitt Sherry R; Wilson Larissa M; Tenaillon Maud I; Gaut Brandon S; Buckler Edward S
Genetic diversity and selection in the maize starch pathway.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(20):12959-62.
2002: Mondragón-Palomino Mariana; Meyers Blake C; Michelmore Richard W; Gaut Brandon S
Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana.
Genome research 2002;12(9):1305-15.
2002: Zhang Liqing; Vision Todd J; Gaut Brandon S
Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana.
Molecular biology and evolution 2002;19(9):1464-73.
2001: Tiffin P; Gaut B S
Molecular evolution of the wound-induced serine protease inhibitor wip1 in Zea and related genera.
Molecular biology and evolution 2001;18(11):2092-101.
2001: Zhang L; Gaut B S; Vision T J
Gene duplication and evolution.
Science (New York, N.Y.) 2001;293(5535):1551.
2001: Tenaillon M I; Sawkins M C; Long A D; Gaut R L; Doebley J F; Gaut B S
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
Proceedings of the National Academy of Sciences of the United States of America 2001;98(16):9161-6.
2001: Tiffin P; Gaut B S
Sequence diversity in the tetraploid Zea perennis and the closely related diploid Z. diploperennis: insights from four nuclear loci.
Genetics 2001;158(1):401-12.
2001: Peek A S; Souza V; Eguiarte L E; Gaut B S
The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli.
Journal of molecular evolution 2001;52(2):193-204.
2001: Zhang L; Pond S K; Gaut B S
A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa.
Journal of molecular evolution 2001;52(2):144-56.
2001: Gaut B S
Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses.
Genome research 2001;11(1):55-66.
2000: Gaut B S; Le Thierry d'Ennequin M; Peek A S; Sawkins M C
Maize as a model for the evolution of plant nuclear genomes.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(13):7008-15.
2000: Peek A S; Gaut B S; Feldman R A; Barry J P; Kochevar R E; Lutz R A; Vrijenhoek R C
Neutral and nonneutral mitochondrial genetic variation in deep-sea clams from the family vesicomyidae.
Journal of molecular evolution 2000;50(2):141-53.
1999: Gaut B S; Peek A S; Morton B R; Clegg M T
Patterns of genetic diversification within the Adh gene family in the grasses (Poaceae).
Molecular biology and evolution 1999;16(8):1086-97.
1998: Peek A S; Vrijenhoek R C; Gaut B S
Accelerated evolutionary rate in sulfur-oxidizing endosymbiotic bacteria associated with the mode of symbiont transmission.
Molecular biology and evolution 1998;15(11):1514-23.
1998: Meyers B C; Shen K A; Rohani P; Gaut B S; Michelmore R W
Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection.
The Plant cell 1998;10(11):1833-46.
1998: Hilton H; Gaut B S
Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene.
Genetics 1998;150(2):863-72.
1998: Wang G L; Ruan D L; Song W Y; Sideris S; Chen L; Pi L Y; Zhang S; Zhang Z; Fauquet C; Gaut B S; Whalen M C; Ronald P C
Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution.
The Plant cell 1998;10(5):765-79.
1998: Eyre-Walker A; Gaut R L; Hilton H; Feldman D L; Gaut B S
Investigation of the bottleneck leading to the domestication of maize.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(8):4441-6.
1997: Gaut B S; Clark L G; Wendel J F; Muse S V
Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae).
Molecular biology and evolution 1997;14(7):769-77.
1997: Gaut B S; Doebley J F
DNA sequence evidence for the segmental allotetraploid origin of maize.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(13):6809-14.
1997: Muse S V; Gaut B S
Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test.
Genetics 1997;146(1):393-9.
1997: Eyre-Walker A; Gaut B S
Correlated rates of synonymous site evolution across plant genomes.
Molecular biology and evolution 1997;14(4):455-60.
1996: Morton B R; Gaut B S; Clegg M T
Evolution of alcohol dehydrogenase genes in the palm and grass families.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(21):11735-9.
1996: Gaut B S; Morton B R; McCaig B C; Clegg M T
Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(19):10274-9.
1996: Hanson M A; Gaut B S; Stec A O; Fuerstenberg S I; Goodman M M; Coe E H; Doebley J F
Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci.
Genetics 1996;143(3):1395-407.
1995: Gaut B S; Lewis P O
Success of maximum likelihood phylogeny inference in the four-taxon case.
Molecular biology and evolution 1995;12(1):152-62.
1994: Muse S V; Gaut B S
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome.
Molecular biology and evolution 1994;11(5):715-24.
1994: Gaut B S; Weir B S
Detecting substitution-rate heterogeneity among regions of a nucleotide sequence.
Molecular biology and evolution 1994;11(4):620-9.
1994: Clegg M T; Gaut B S; Learn G H; Morton B R
Rates and patterns of chloroplast DNA evolution.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(15):6795-801.
1993: Gaut B S; Clegg M T
Nucleotide polymorphism in the Adh1 locus of pearl millet (Pennisetum glaucum) (Poaceae).
Genetics 1993;135(4):1091-7.
1993: Gaut B S; Clegg M T
Molecular evolution of the Adh1 locus in the genus Zea.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(11):5095-9.
1993: Gaut B S; Muse S V; Clegg M T
Relative rates of nucleotide substitution in the chloroplast genome.
Molecular phylogenetics and evolution 1993;2(2):89-96.
1992: Gaut B S; Muse S V; Clark W D; Clegg M T
Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants.
Journal of molecular evolution 1992;35(4):292-303.
1991: Gaut B S; Clegg M T
Molecular evolution of alcohol dehydrogenase 1 in members of the grass family.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(6):2060-4.
1990: Wilson M A; Gaut B; Clegg M T
Chloroplast DNA evolves slowly in the palm family (Arecaceae).
Molecular biology and evolution 1990;7(4):303-14.

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