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James Aramini

Research Profile

Phenomena

Magnetic Resonance Spectroscopy

Concepts & Ideas

Chemicals & Drugs

Living Beings

Escherichia coli

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Publications

TOP 3
Paolo Rossi; Rong Xiao; Thomas B Acton; James M Aramini; Christopher M Barbieri; Elisabetta Bini; haleema janjua; Hsiau-Wei Lee; Gaetano T Montelione
Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome.
James M Aramini; John K Everett; haleema janjua; Dong Yup Lee; Donald Petrey; Rong Xiao; Thomas B Acton; Gaetano T Montelione
Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267.
David A Snyder; Rong Xiao; Bomina Yu; Burkhard Rost; Ritu Shastry; Thomas B Acton; James M Aramini; John R Cort; Yuanpeng J Huang; Michael A Kennedy; Jinfeng Liu; Li-Chung Ma; Gaetano T Montelione
Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.

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All Publications

2013: Paolo Rossi; Rong Xiao; Thomas B Acton; James M Aramini; Christopher M Barbieri; Elisabetta Bini; haleema janjua; Hsiau-Wei Lee; Gaetano T Montelione
Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome.
Nucleic acids research 2013;41(4):2756-68.
2012: James M Aramini; John K Everett; haleema janjua; Dong Yup Lee; Donald Petrey; Rong Xiao; Thomas B Acton; Gaetano T Montelione
Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267.
Journal of structural and functional genomics 2012;13(3):171-6.
2012: David A Snyder; Rong Xiao; Bomina Yu; Burkhard Rost; Ritu Shastry; Thomas B Acton; James M Aramini; John R Cort; Yuanpeng J Huang; Michael A Kennedy; Jinfeng Liu; Li-Chung Ma; Gaetano T Montelione
Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.
Proteins 2012;80(7):1901-6.
2012: James M Aramini; Asli Ertekin; John K Everett; Keith Hamilton; Hsiau-Wei Lee; Alexander Lemak; Paolo Rossi; Huang Wang; Rong Xiao; Thomas B Acton; Gaetano T Montelione
Solution NMR structure, backbone dynamics, and heme-binding properties of a novel cytochrome c maturation protein CcmE from Desulfovibrio vulgaris.
Biochemistry 2012;51(18):3705-7.
2011: James M Aramini; Markus Fischer; Paolo Rossi; Rong Xiao; Thomas B Acton; Gaetano T Montelione
Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function.
Proteins 2011;79(10):2988-91.
2011: Cuifeng Yin; G V T Swapna; James M Aramini; John R Cort; Robert M Krug; Li-Chung Ma; Gaetano T Montelione
Backbone and Ile-δ1, Leu, Val methyl 1H, 13C and 15N NMR chemical shift assignments for human interferon-stimulated gene 15 protein.
Biomolecular NMR assignments 2011;5(2):215-9.
2011: James M Aramini; Colleen T Ciccosanti; Keith Hamilton; Robert M Krug; Hsiau-Wei Lee; Li-Chung Ma; Timothy R Mack; Curtis M Schauder; Rong Xiao; Li Zhao; Ligang Zhou; Brendan R Amer; Gaetano T Montelione
Dimer interface of the effector domain of non-structural protein 1 from influenza A virus: an interface with multiple functions.
The Journal of biological chemistry 2011;286(29):26050-60.
2011: Thomas B Acton; Rong Xiao; Stephen Anderson; James M Aramini; William A Buchwald; Colleen Ciccosanti; Ken Conover; John Everett; Keith Hamilton; Yuanpeng Janet Huang; Haleema Janjua; Gregory Kornhaber; Jessica Lau; Dong Yup Lee; Gaohua Liu; Melissa Maglaqui; LiChung Ma; Lei Mao; Dayaban Patel; Paolo Rossi; Seema Sahdev; Ritu Shastry; G V T Swapna; Yeufeng Tang; Saichiu Tong; Dongyan Wang; Huang Wang; Li Zhao; Gaetano T Montelione
Preparation of protein samples for NMR structure, function, and small-molecule screening studies.
Methods in enzymology 2011;493():21-60.
2011: James M Aramini; Paolo Rossi; John R Cort; Li-Chung Ma; Rong Xiao; Thomas B Acton; Gaetano T Montelione
Solution NMR structure of the plasmid-encoded fimbriae regulatory protein PefI from Salmonella enterica serovar Typhimurium.
Proteins 2011;79(1):335-9.
2010: Kalyan Das; James M Aramini; Li-Chung Ma; Robert M Krug; Eddy Arnold
Structures of influenza A proteins and insights into antiviral drug targets.
Nature structural & molecular biology 2010;17(5):530-8.
2010: James M Aramini; Julie L Tubbs; Sreenivas Kanugula; Paolo Rossi; Asli Ertekin; Melissa Maglaqui; Keith Hamilton; Colleen T Ciccosanti; Mei Jiang; Rong Xiao; Ta-Tsen Soong; Burkhard Rost; Thomas B Acton; John K Everett; Anthony E Pegg; John A Tainer; Gaetano T Montelione
Structural basis of O6-alkylguanine recognition by a bacterial alkyltransferase-like DNA repair protein.
The Journal of biological chemistry 2010;285(18):13736-41.
2010: Srivatsan Raman; Yuanpeng J Huang; Binchen Mao; Paolo Rossi; James M Aramini; Gaohua Liu; Gaetano T Montelione; David Baker
Accurate automated protein NMR structure determination using unassigned NOESY data.
Journal of the American Chemical Society 2010;132(1):202-7.
2010: Paolo Rossi; G V T Swapna; Yuanpeng J Huang; James M Aramini; Clemens Anklin; Kenith Conover; Keith Hamilton; Rong Xiao; Thomas B Acton; Asli Ertekin; John K Everett; Gaetano T Montelione
A microscale protein NMR sample screening pipeline.
Journal of biomolecular NMR 2010;46(1):11-22.
2009: Seema Sharma; Haiyan Zheng; Yuanpeng J Huang; Asli Ertekin; Yoshitomo Hamuro; Paolo Rossi; Roberto Tejero; Thomas B Acton; Rong Xiao; Mei Jiang; Li Zhao; Li-Chung Ma; G V T Swapna; James M Aramini; Gaetano T Montelione
Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry.
Proteins 2009;76(4):882-94.
2009: Robert M Krug; James M Aramini
Emerging antiviral targets for influenza A virus.
Trends in pharmacological sciences 2009;30(6):269-77.
2009: Gaohua Liu; Farhad Forouhar; Alexander Eletsky; Hanudatta S Atreya; James M Aramini; Rong Xiao; Yuanpeng J Huang; Mariam Abashidze; Jayaraman Seetharaman; Jinfeng Liu; Burkhard Rost; Thomas B Acton; Gaetano T Montelione; John F Hunt; Thomas Szyperski
NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway.
Journal of structural and functional genomics 2009;10(2):127-36.
2008: Jorge A Vila; James M Aramini; Paolo Rossi; Alexandre Kuzin; Min Su; Jayaraman Seetharaman; Rong Xiao; Liang Tong; Gaetano T Montelione; Harold A Scheraga
Quantum chemical 13C(alpha) chemical shift calculations for protein NMR structure determination, refinement, and validation.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(38):14389-94.
2008: James M Aramini; Paolo Rossi; Yuanpeng J Huang; Li Zhao; Mei Jiang; Melissa Maglaqui; Rong Xiao; Jessica Locke; Rajesh Nair; Burkhard Rost; Thomas B Acton; Masayori Inouye; Gaetano T Montelione
Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad.
Biochemistry 2008;47(37):9715-7.
2008: Kalyan Das; Li-Chung Ma; Rong Xiao; Brian Radvansky; James M Aramini; Li Zhao; Jesper Marklund; Rei-Lin Kuo; Karen Y Twu; Eddy Arnold; Robert M Krug; Gaetano T Montelione
Structural basis for suppression of a host antiviral response by influenza A virus.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(35):13093-8.
2008: James M Aramini; Seema Sharma; Yuanpeng J Huang; G V T Swapna; Chi Kent Ho; Karishma Shetty; Kellie Cunningham; Li-Chung Ma; Li Zhao; Leah A Owens; Mei Jiang; Rong Xiao; Jinfeng Liu; Michael C Baran; Thomas B Acton; Burkhard Rost; Gaetano T Montelione
Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.
Proteins 2008;72(1):526-30.
2008: Yang Shen; oliver lange; Frank Delaglio; Paolo Rossi; James M Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H Arrowsmith; Thomas Szyperski; Gaetano T Montelione; David Baker; Adriaan Bax
Consistent blind protein structure generation from NMR chemical shift data.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(12):4685-90.
2007: James M Aramini; Yuanpeng J Huang; G V T Swapna; John R Cort; P K Rajan; Rong Xiao; Ritu Shastry; Thomas B Acton; Jinfeng Liu; Burkhard Rost; Michael A Kennedy; Gaetano T Montelione
Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family.
Proteins 2007;68(3):789-95.
2007: James M Aramini; Paolo Rossi; Clemens Anklin; Rong Xiao; Gaetano T Montelione
Microgram-scale protein structure determination by NMR.
Nature methods 2007;4(6):491-3.
2006: Michael C Baran; Hunter N B Moseley; James M Aramini; Marvin J Bayro; Daniel Monleon; Jessica Y Locke; Gaetano T Montelione
SPINS: a laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations.
Proteins 2006;62(4):843-51.
2005: David A Snyder; Yang Chen; Natalia G Denissova; Thomas B Acton; James M Aramini; Melissa Ciano; Richard Karlin; Jinfeng Liu; Philip Manor; P A Rajan; Paolo Rossi; G V T Swapna; Rong Xiao; Burkhard Rost; John Hunt; Gaetano T Montelione
Comparisons of NMR spectral quality and success in crystallization demonstrate that NMR and X-ray crystallography are complementary methods for small protein structure determination.
Journal of the American Chemical Society 2005;127(47):16505-11.
2005: James M Aramini; G V T Swapna; Yuanpeng J Huang; PK Rajan; Rong Xiao; Ritu Shastry; Thomas B Acton; John R Cort; Michael A Kennedy; Gaetano T Montelione
1H, 13C, and 15N resonance assignments for Escherichia coli ytfP, a member of the broadly conserved UPF0131 protein domain family.
Journal of biomolecular NMR 2005;33(3):197.
2005: Gaohua Liu; James M Aramini; Hanudatta S Atreya; Alexander Eletsky; Rong Xiao; Thomas B Acton; LiChung Ma; Gaetano T Montelione; Thomas Szyperski
GFT NMR based resonance assignment for the 21 kDa human protein UFC1.
Journal of biomolecular NMR 2005;32(3):261.
2005: Thomas B Acton; Kristin C Gunsalus; Rong Xiao; Li Chung Ma; James M Aramini; Michael C Baran; Yi-Wen Chiang; Teresa Climent; Bonnie Cooper; Natalia G Denissova; Shawn Douglas; John K Everett; Chi Kent Ho; Daphne Macapagal; Paranji K Rajan; Ritu Shastry; Liang-Yu Shih; G V T Swapna; Michael Wilson; Margaret Wu; Mark Gerstein; Masayori Inouye; John F Hunt; Gaetano T Montelione
Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium.
Methods in enzymology 2005;394():210-43.
2004: Hunter N B Moseley; Nadeem Riaz; James M Aramini; Thomas Szyperski; Gaetano T Montelione
A generalized approach to automated NMR peak list editing: application to reduced dimensionality triple resonance spectra.
Journal of magnetic resonance (San Diego, Calif. : 1997) 2004;170(2):263-77.
2004: James M Aramini; Stephen Cleaver; Richard T Pon; Richard P Cunningham; Markus Germann
Solution structure of a DNA duplex containing an alpha-anomeric adenosine: insights into substrate recognition by endonuclease IV.
Journal of molecular biology 2004;338(1):77-91.
2004: Chen-ya Chien; Yujia Xu; Rong Xiao; James M Aramini; Parag V Sahasrabudhe; Robert M Krug; Gaetano T Montelione
Biophysical characterization of the complex between double-stranded RNA and the N-terminal domain of the NS1 protein from influenza A virus: evidence for a novel RNA-binding mode.
Biochemistry 2004;43(7):1950-62.
2004: Deyou Zheng; James M Aramini; Gaetano T Montelione
Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data.
Protein science : a publication of the Protein Society 2004;13(2):549-54.
2004: Daniel Monleon; Yiwen Chiang; James M Aramini; G V T Swapna; Daphne Macapagal; Kristin C Gunsalus; Seho Kim; Thomas Szyperski; Gaetano T Montelione
Backbone 1H, 15N and 13C assignments for the 21 kDa Caenorhabditis elegans homologue of "brain-specific" protein.
Journal of biomolecular NMR 2004;28(1):91-2.
2003: James M Aramini; Yuanpeng J Huang; John R Cort; Sharon Goldsmith-Fischman; Rong Xiao; Liang-Yu Shih; Chi K Ho; Jinfeng Liu; Burkhard Rost; Barry Honig; Michael A Kennedy; Thomas B Acton; Gaetano T Montelione
Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.
Protein science : a publication of the Protein Society 2003;12(12):2823-30.
2003: James M Aramini; Jeffrey L Mills; Rong Xiao; Thomas B Acton; Maggie J Wu; Thomas Szyperski; Gaetano T Montelione
Resonance assignments for the hypothetical protein yggU from Escherichia coli.
Journal of biomolecular NMR 2003;27(3):285-6.
2003: Deyou Zheng; Yuanpeng J Huang; Hunter N B Moseley; Rong Xiao; James M Aramini; G V T Swapna; Gaetano T Montelione
Automated protein fold determination using a minimal NMR constraint strategy.
Protein science : a publication of the Protein Society 2003;12(6):1232-46.
2002: Weiming Yuan; James M Aramini; Gaetano T Montelione; Robert M Krug
Structural basis for ubiquitin-like ISG 15 protein binding to the NS1 protein of influenza B virus: a protein-protein interaction function that is not shared by the corresponding N-terminal domain of the NS1 protein of influenza A virus.
Virology 2002;304(2):291-301.
2001: Edyth L Malin; MH Alaimo; Eleanor M Brown; James M Aramini; Markus Germann; Harold M Farrell; P L H McSweeney; Patrick F Fox
Solution structures of casein peptides: NMR, FTIR, CD, and molecular modeling studies of alphas1-casein, 1-23.
Journal of protein chemistry 2001;20(5):391-404.
2001: Markus Germann; James M Aramini; BW Kalisch; JH van de Sande
Structural, dynamic, and enzymatic properties of mixed alpha/beta-oligonucleotides containing polarity reversals.
Nucleosides, nucleotides & nucleic acids 2001;20(4-7):493-9.
2000: James M Aramini; Anwer Mujeeb; Nikolai B Ulyanov; Markus Germann
Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: a molecular dynamics study using time-averaged restraints.
Journal of biomolecular NMR 2000;18(4):287-302.
1999: James M Aramini; Markus Germann
Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-alphaT-5'-5'-GCTC). r(gagcaccau).
Biochemistry 1999;38(47):15448-58.
1998: James M Aramini; Anwer Mujeeb; Markus Germann
NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control.
Nucleic acids research 1998;26(24):5644-54.
1998: James M Aramini; Markus Germann
NMR studies of DNA duplexes containing alpha-anomeric nucleotides and polarity reversals.
Biochemistry and cell biology = Biochimie et biologie cellulaire 1998;76(2-3):403-10.
1998: James M Aramini; H J Vogel
Quadrupolar metal ion NMR studies of metalloproteins.
Biochemistry and cell biology = Biochimie et biologie cellulaire 1998;76(2-3):210-22.
1997: James M Aramini; JH van de Sande; Markus Germann
Spectroscopic and thermodynamic studies of DNA duplexes containing alpha-anomeric C, A, and G nucleotides and polarity reversals: coexistence of localized parallel and antiparallel DNA.
Biochemistry 1997;36(32):9715-25.
1997: T Satoh; James M Aramini; Shengwen Li; Thea M Friedman; J Gao; Andrea E Edling; R Townsend; Ute Koch; Swati Choksi; Markus Germann; Robert Korngold; Ziwei Huang
Bioactive peptide design based on protein surface epitopes. A cyclic heptapeptide mimics CD4 domain 1 CC' loop and inhibits CD4 biological function.
The Journal of biological chemistry 1997;272(18):12175-80.
1996: James M Aramini; BW Kalisch; R T Pon; JH van de Sande; Markus Germann
Structure of a DNA duplex that contains alpha-anomeric nucleotides and 3'-3' and 5'-5' phosphodiester linkages: coexistence of parallel and antiparallel DNA.
Biochemistry 1996;35(29):9355-65.
1996: James M Aramini; T Hiraoki; M R Grace; T W Swaddle; Emilia Chiancone; Hans J Vogel
NMR and stopped-flow studies of metal ion binding to alpha-lactalbumins.
Biochimica et biophysica acta 1996;1293(1):72-82.
1996: James M Aramini; Hans J Vogel
The effects of temperature, viscosity, and molecular size on the aluminum-27 QCT NMR of transferrins.
Journal of magnetic resonance. Series B 1996;110(2):182-7.
1995: M Zhang; Tao Yuan; James M Aramini; Hans J Vogel
Interaction of calmodulin with its binding domain of rat cerebellar nitric oxide synthase. A multinuclear NMR study.
The Journal of biological chemistry 1995;270(36):20901-7.
1995: James M Aramini; T Hiraoki; Y Ke; Katsutoshi Nitta; Hans J Vogel
Cadmium-113 NMR studies of bovine and human alpha-lactalbumin and equine lysozyme.
Journal of biochemistry 1995;117(3):623-8.
1994: James M Aramini; P H Krygsman; Hans J Vogel
Thallium-205 and carbon-13 NMR studies of human sero- and chicken ovotransferrin.
Biochemistry 1994;33(11):3304-11.
1992: James M Aramini; T Drakenberg; T Hiraoki; Y Ke; Katsutoshi Nitta; Hans J Vogel
Calcium-43 NMR studies of calcium-binding lysozymes and alpha-lactalbumins.
Biochemistry 1992;31(29):6761-8.