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Paul Giresi

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TOP 3
Jeremy M Simon; Ian Davis; Paul G Giresi; Jason D Lieb
A detailed protocol for formaldehyde-assisted isolation of regulatory elements (FAIRE).
Jeremy M Simon; Ian J Davis; Paul G Giresi; Jason D Lieb
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA.
Lingyun Song; Teresa Vales; Tianyuan Wang; Deborah Winter; Zhancheng Zhang; Zhuzhu Zhang; Ewan Birney; Alan P Boyle; Neil D Clarke; Gregory E Crawford; Paul G Giresi; Stefan Gräf; Linda L Grasfeder; Mikael Huss; Vishwanath R Iyer; Damian Keefe; Bum-Kyu Lee; Jason Dillon Lieb; Zheng Liu; Darin London; Ryan M McDaniell; Nathan C Sheffield; Yoichiro Shibata; Kimberly A Showers; Jeremy M Simon; Terrence S Furey
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.

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All Publications

2013: Jeremy M Simon; Ian Davis; Paul G Giresi; Jason D Lieb
A detailed protocol for formaldehyde-assisted isolation of regulatory elements (FAIRE).
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2013;Chapter 21():Unit21.26.
2012: Jeremy M Simon; Ian J Davis; Paul G Giresi; Jason D Lieb
Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA.
Nature protocols 2012;7(2):256-67.
2011: Lingyun Song; Teresa Vales; Tianyuan Wang; Deborah Winter; Zhancheng Zhang; Zhuzhu Zhang; Ewan Birney; Alan P Boyle; Neil D Clarke; Gregory E Crawford; Paul G Giresi; Stefan Gräf; Linda L Grasfeder; Mikael Huss; Vishwanath R Iyer; Damian Keefe; Bum-Kyu Lee; Jason Dillon Lieb; Zheng Liu; Darin London; Ryan M McDaniell; Nathan C Sheffield; Yoichiro Shibata; Kimberly A Showers; Jeremy M Simon; Terrence S Furey
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Genome research 2011;21(10):1757-67.
2011: Naim U Rashid; Wei Sun; Paul G Giresi; Joseph G Ibrahim; Jason Dillon Lieb
ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.
Genome biology 2011;12(7):R67.
2010: Kyle J Gaulton; Takao Nammo; Lorenzo Pasquali; Jeremy M Simon; Paul G Giresi; Marie P Fogarty; Tami M Panhuis; Piotr A Mieczkowski; Antonio Secchi; Domenico Bosco; Thierry Berney; Eduard Montanya; Karen L Mohlke; Jason Dillon Lieb; Jorge Ferrer
A map of open chromatin in human pancreatic islets.
Nature genetics 2010;42(3):255-9.
2009: Paul G Giresi; Jason Dillon Lieb
Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).
Methods (San Diego, Calif.) 2009;48(3):233-9.
2009: Anna Azvolinsky; Paul G Giresi; Jason Dillon Lieb; Virginia A Zakian
Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae.
Molecular cell 2009;34(6):722-34.
2007: Paul G Giresi; Jonghwan Kim; Ryan M McDaniell; Vishwanath R Iyer; Jason Dillon Lieb
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
Genome research 2007;17(6):877-85.
2007: Sevinc Ercan; Paul G Giresi; Christina M Whittle; Xinmin Zhang; Roland D Green; Jason Dillon Lieb
X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.
Nature genetics 2007;39(3):403-8.
2006: Paul G Giresi; Jason Dillon Lieb
How to find an opening (or lots of them).
Nature methods 2006;3(7):501-2.
2006: Paul G Giresi; Mayetri Gupta; Jason Dillon Lieb
Regulation of nucleosome stability as a mediator of chromatin function.
Current opinion in genetics & development 2006;16(2):171-6.
2005: Paul G Giresi; Eric J Stevenson; Joachim Theilhaber; Alan Koncarevic; Jascha D Parkington; Roger A Fielding; Susan C Kandarian
Identification of a molecular signature of sarcopenia.
Physiological genomics 2005;21(2):253-63.
2005: Eric J Stevenson; Alan Koncarevic; Paul G Giresi; Robert Jackman; Susan C Kandarian
Transcriptional profile of a myotube starvation model of atrophy.
Journal of applied physiology (Bethesda, Md. : 1985) 2005;98(4):1396-406.
2003: Eric J Stevenson; Paul G Giresi; Alan Koncarevic; Susan C Kandarian
Global analysis of gene expression patterns during disuse atrophy in rat skeletal muscle.
The Journal of physiology 2003;551(Pt 1):33-48.