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Frank Oliver Glöckner

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Anna Klindworth; Jörg Peplies; Elmar Pruesse; Christian Quast; Timmy Schweer; Matthias Horn; Frank Oliver Glöckner
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.
Pier Luigi Buttigieg; Melissa Beth Duhaime; Wolfgang Hankeln; Ivaylo Kostadinov; Renzo Kottmann; Pelin Yilmaz; Frank Oliver Glöckner
Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes.
Christian Quast; Timmy Schweer; Pablo Yarza; Pelin Yilmaz; Jan Gerken; Jörg Peplies; Elmar Pruesse; Frank Oliver Glöckner
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

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2013: Anna Klindworth; Jörg Peplies; Elmar Pruesse; Christian Quast; Timmy Schweer; Matthias Horn; Frank Oliver Glöckner
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies.
Nucleic acids research 2013;41(1):e1.
2013: Pier Luigi Buttigieg; Melissa Beth Duhaime; Wolfgang Hankeln; Ivaylo Kostadinov; Renzo Kottmann; Pelin Yilmaz; Frank Oliver Glöckner
Ecogenomic perspectives on domains of unknown function: correlation-based exploration of marine metagenomes.
PloS one 2013;8(3):e50869.
2013: Christian Quast; Timmy Schweer; Pablo Yarza; Pelin Yilmaz; Jan Gerken; Jörg Peplies; Elmar Pruesse; Frank Oliver Glöckner
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.
Nucleic acids research 2013;41(Database issue):D590-6.
2012: Christian Jogler; Mareike Jogler; Frank Oliver Glöckner; Xiaoluo Huang; Thorsten Mascher; Jost Waldmann; Roberto Kolter
Identification of proteins likely to be involved in morphogenesis, cell division, and signal transduction in Planctomycetes by comparative genomics.
Journal of bacteriology 2012;194(23):6419-30.
2012: Hanno Teeling; Frank Oliver Glöckner
Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective.
Briefings in bioinformatics 2012;13(6):728-42.
2012: Pelin Yilmaz; Wolfgang Hankeln; Morten H Iversen; Renzo Kottmann; Christian Quast; Frank Oliver Glöckner
Ecological structuring of bacterial and archaeal taxa in surface ocean waters.
FEMS microbiology ecology 2012;81(2):373-85.
2012: Elmar Pruesse; Jörg Peplies; Frank Oliver Glöckner
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
Bioinformatics (Oxford, England) 2012;28(14):1823-9.
2012: Birgit Voigt; Hanno Teeling; Rudolf Amann; Dörte Becher; Frank Oliver Glöckner; Michael Hecker; Kristina Hempel; Cao Xuan Hieu; Rabea Schlüter; Thomas Schweder
Cell surface proteome of the marine planctomycete Rhodopirellula baltica.
Proteomics 2012;12(11):1781-91.
2012: Hanno Teeling; Jost Waldmann; Marc Weber; Antje Wichels; Karen H Wiltshire; Dörte Becher; Christin M Bennke; Jörg Bernhardt; Frank D Bockelmann; Ulrich Callies; Bernhard M Fuchs; Antje Gardebrecht; Gunnar Gerdts; Frank Oliver Glöckner; Michael Hecker; Sixing Huang; Mariette Kassabgy; Anna Klindworth; Christine Klockow; Jana Lange; Alexander J Mann; Andreas Otto; Jörg Peplies; Christine Reinsch; Thomas Schweder; Rudolf Amann
Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom.
Science (New York, N.Y.) 2012;336(6081):608-11.
2012: Danny Ionescu; Jonathan B Laronne; Tobias Licha; Christian Lott; Yaniv Y Munwes; Aharon Oren; Jörg Peplies; Lubos Polerecky; Christian Quast; Alban Ramette; Tino Rödiger; Martin Sauter; Christian Siebert; Hans-Joachim Stärk; Thorsten Dittmar; Stefan Geyer; Frank Oliver Glöckner; Stefan Häusler; Mina Bižić-Ionescu; Dirk de Beer
Microbial and chemical characterization of underwater fresh water springs in the Dead Sea.
PloS one 2012;7(6):e38319.
2012: Manuel Ferrer; Frank Oliver Glöckner; Peter N Golyshin; Olga V Golyshina; Violetta La Cono; Hanno Teeling; Jost Waldmann; Johannes Werner; Michail M Yakimov; Rafael Bargiela; Tatyana N Chernikova; Lucía Fernández
Unveiling microbial life in the new deep-sea hypersaline Lake Thetis. Part II: a metagenomic study.
Environmental microbiology 2012;14(1):268-81.
2011: Pelin Yilmaz; Linda Amaral-Zettler; Guy Cochrane; Jack A Gilbert; Frank Oliver Glöckner; Ilene Karsch-Mizrachi; Rob Knight; Yasukazu Nakamura; Susanna-Assunta Sansone; Dawn Field
The genomic standards consortium: bringing standards to life for microbial ecology.
The ISME journal 2011;5(10):1565-7.
2011: Pelin Yilmaz; Renzo Kottmann; Elmar Pruesse; Christian Quast; Frank Oliver Glöckner
Analysis of 23S rRNA genes in metagenomes - a case study from the Global Ocean Sampling Expedition.
Systematic and applied microbiology 2011;34(6):462-9.
2011: Martha Schattenhofer; Jörg Wulf; Mikhail V Zubkov; Frank Oliver Glöckner; Ivalyo Kostadinov; Bernhard M Fuchs
Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean.
Systematic and applied microbiology 2011;34(6):470-5.
2011: Christian Jogler; Frank Oliver Glöckner; Roberto Kolter
Characterization of Planctomyces limnophilus and development of genetic tools for its manipulation establish it as a model species for the phylum Planctomycetes.
Applied and environmental microbiology 2011;77(16):5826-9.
2011: Dawn Field; George M Garrity; Jack Gilbert; Frank Oliver Glöckner; Lynette Hirschman; Ilene Karsch-Mizrachi; Hans-Peter Klenk; Rob Knight; Renzo Kottmann; Nikos Kyrpides; Folker Meyer; Inigo San Gil; Susanna-Assunta Sansone; Lynn M Schriml; Peter Sterk; Tatiana Tatusova; David W Ussery; Owen R White; Linda Amaral-Zettler; Guy Cochrane; James R Cole; Peter Dawyndt; John Wooley
The Genomic Standards Consortium.
PLoS biology 2011;9(6):e1001088.
2011: Marc Weber; Hanno Teeling; Sixing Huang; Jost Waldmann; Mariette Kassabgy; Bernhard M Fuchs; Anna Klindworth; Christine Klockow; Antje Wichels; Gunnar Gerdts; Rudolf Amann; Frank Oliver Glöckner
Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics.
The ISME journal 2011;5(5):918-28.
2011: Norman Morrison; Goran Nenadic; Peter Sterk; Bert Verslyppe; Pelin Yilmaz; Frank Oliver Glöckner; Jeff Grethe; David Hancock; Lynette Hirschman; Renzo Kottmann; Nikos Kyrpides; Tim Booth; Peter Dawyndt; Dawn Field
Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets.
Standards in genomic sciences 2011;4(2):286-92.
2011: Melissa Beth Duhaime; Dawn Field; Renzo Kottmann; Frank Oliver Glöckner
Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard.
Standards in genomic sciences 2011;4(2):271-85.
2011: Ivaylo Kostadinov; Renzo Kottmann; Alban Ramette; Jost Waldmann; Pier Luigi Buttigieg; Frank Oliver Glöckner
Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes.
Microbial informatics and experimentation 2011;1(1):9.
2011: Wolfgang Hankeln; Ivaylo Kostadinov; Renzo Kottmann; Jost Waldmann; Norma Johanna Wendel; Pelin Yilmaz; Pier Luigi Buttigieg; Jan Gerken; Frank Oliver Glöckner
CDinFusion--submission-ready, on-line integration of sequence and contextual data.
PloS one 2011;6(9):e24797.
2011: Melissa Beth Duhaime; Antje Wichels; Jost Waldmann; Hanno Teeling; Frank Oliver Glöckner
Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1.
The ISME journal 2011;5(1):107-21.
2010: Pablo Yarza; Wolfgang Ludwig; Jean Euzéby; Rudolf Amann; Karl-Heinz Schleifer; Frank Oliver Glöckner; Ramon Rosselló-Móra
Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses.
Systematic and applied microbiology 2010;33(6):291-9.
2010: Patricia Wecker; Christine Klockow; Margarete Schüler; Jérôme Dabin; Gurvan MICHEL; Frank Oliver Glöckner
Life cycle analysis of the model organism Rhodopirellula baltica SH 1(T) by transcriptome studies.
Microbial biotechnology 2010;3(5):583-94.
2010: Frank Oliver Glöckner; Ian Joint
Marine microbial genomics in Europe: current status and perspectives.
Microbial biotechnology 2010;3(5):523-30.
2010: Arantxa Peña; Hanno Teeling; Jaime Huerta-Cepas; Fernando Santos; Pablo Yarza; Jocelyn Brito-Echeverría; Marianna Lucio; philippe schmitt-kopplin; Inmaculada Meseguer; Chantal Schenowitz; Carole Dossat; Valerie Barbe; Joaquín Dopazo; Ramon Rosselló-Mora; Margarete Schüler; Frank Oliver Glöckner; Rudolf Amann; Toni Gabaldón; Josefa Antón
Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains.
The ISME journal 2010;4(7):882-95.
2010: Jana Glöckner; Michael Kube; Pravin Malla Shrestha; Marc Weber; Frank Oliver Glöckner; Richard Reinhardt; Werner Liesack
Phylogenetic diversity and metagenomics of candidate division OP3.
Environmental microbiology 2010;12(5):1218-29.
2010: Anke Meyerdierks; Michael Kube; Ivaylo Kostadinov; Hanno Teeling; Frank Oliver Glöckner; Richard Reinhardt; Rudolf Amann
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group.
Environmental microbiology 2010;12(2):422-39.
2010: Astrid Gärdes; Eva Kaeppel; Aamir Shehzad; Shalin Seebah; Hanno Teeling; Pablo Yarza; Frank Oliver Glöckner; Hans-Peter Grossart; Matthias S Ullrich
Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism.
Standards in genomic sciences 2010;3(2):97-107.
2010: Jack A Gilbert; Folker Meyer; Janet Jansson; Jeff Gordon; Norman Pace; James M Tiedje; Ruth Ley; Noah Fierer; Dawn Field; Nikos Kyrpides; Frank Oliver Glöckner; Hans-Peter Klenk; K Eric Wommack; Elizabeth Glass; Kathryn Docherty; Rachel Gallery; Rick Stevens; Rob Knight
The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.
Standards in genomic sciences 2010;3(3):249-53.
2010: Tanja Davidsen; Ramana Madupu; Peter Sterk; Dawn Field; George M Garrity; Jack Gilbert; Frank Oliver Glöckner; Lynette Hirschman; Eugene Kolker; Renzo Kottmann; Nikos Kyrpides; Folker Meyer; Norman Morrison; Lynn M Schriml; Tatiana Tatusova; John Wooley
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9.
Standards in genomic sciences 2010;3(3):216-24.
2010: Nikos Kyrpides; Dawn Field; Peter Sterk; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; Guy Cochrane; John Wooley
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8.
Standards in genomic sciences 2010;3(1):93-6.
2010: Wolfgang Hankeln; Pier Luigi Buttigieg; Dennis Fink; Renzo Kottmann; Pelin Yilmaz; Frank Oliver Glöckner
MetaBar - a tool for consistent contextual data acquisition and standards compliant submission.
BMC bioinformatics 2010;11():358.
2010: Renzo Kottmann; Ivalyo Kostadinov; Melissa Beth Duhaime; Pier Luigi Buttigieg; Pelin Yilmaz; Wolfgang Hankeln; Jost Waldmann; Frank Oliver Glöckner
Megx.net: integrated database resource for marine ecological genomics.
Nucleic acids research 2010;38(Database issue):D391-5.
2009: Axel W Strittmatter; Heiko Liesegang; Ralf Rabus; Iwona Decker; Judith Amann; Sönke Andres; Anke Henne; W. Florian Fricke; Rosa Martinez-Arias; Daniela Bartels; Alexander Goesmann; Lutz Krause; Alfred Pühler; Hans-Peter Klenk; Michael Richter; Margarete Schüler; Frank Oliver Glöckner; Anke Meyerdierks; Gerhard Gottschalk; Rudolf Amann
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
Environmental microbiology 2009;11(5):1038-55.
2009: Dawn Field; Iddo Friedberg; Peter Sterk; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; Guy Cochrane; John Wooley; Jack Gilbert
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Special Interest Group at ISMB 2009.
Standards in genomic sciences 2009;1(3):278-82.
2009: John C Wooley; Dawn Field; Frank Oliver Glöckner
Extending Standards for Genomics and Metagenomics Data: A Research Coordination Network for the Genomic Standards Consortium (RCN4GSC).
Standards in genomic sciences 2009;1(1):87-90.
2009: Dawn Field; Peter Sterk; Nikos Kyrpides; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; John Wooley; Paul Gilna
Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7.
Standards in genomic sciences 2009;1(1):68-71.
2009: Patricia Wecker; Christine Klockow; Andreas Ellrott; Christian Quast; Philipp Langhammer; Jens Harder; Frank Oliver Glöckner
Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions.
BMC genomics 2009;10():410.
2008: Linda A Amaral Zettler; Jörg Peplies; Alban Ramette; Bernhard Fuchs; Wolfgang Ludwig; Frank Oliver Glöckner
Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.
Systematic and applied microbiology 2008;31(4):258-68.
2008: Jörg Peplies; Renzo Kottmann; Wolfgang Ludwig; Frank Oliver Glöckner
A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.
Systematic and applied microbiology 2008;31(4):251-7.
2008: Pablo Yarza; Michael Richter; Jörg Peplies; Jean Euzeby; Rudolf Amann; Karl-Heinz Schleifer; Wolfgang Ludwig; Frank Oliver Glöckner; Ramon Rosselló-Móra
The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Systematic and applied microbiology 2008;31(4):241-50.
2008: George M Garrity; Dawn Field; Nikos Kyrpides; Lynette Hirschman; Susanna-Assunta Sansone; Samuel Angiuoli; James R Cole; Frank Oliver Glöckner; Eugene Kolker; George Kowalchuk; Mary Ann Moran; Dave Ussery; Owen R White
Toward a standards-compliant genomic and metagenomic publication record.
Omics : a journal of integrative biology 2008;12(2):157-60.
2008: Dawn Field; George M Garrity; Susanna-Assunta Sansone; Peter Sterk; Tanya Gray; Nikos Kyrpides; Lynette Hirschman; Frank Oliver Glöckner; Renzo Kottmann; Sam Angiuoli; Owen R White; Peter Dawyndt; Nick Thomson; Inigo San Gil; Norman Morrison; Tatiana Tatusova; Ilene Mizrachi; Robert Vaughan; Guy Cochrane; Leonid Kagan; Sean Murphy; Lynn M Schriml
Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.
Omics : a journal of integrative biology 2008;12(2):109-13.
2008: Dawn Field; Frank Oliver Glöckner; George M Garrity; Tanya Gray; Peter Sterk; Guy Cochrane; Robert Vaughan; Eugene Kolker; Renzo Kottmann; Nikos Kyrpides; Sam Angiuoli; Peter Dawyndt; Robert Guralnick; Philip Goldstein; Neil Hall; Lynette Hirschman; Saul Kravitz; Allyson L Lister; Victor Markowitz; Nick Thomson; Trish Whetzel
Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.
Omics : a journal of integrative biology 2008;12(2):101-8.
2008: Bart Van Brabant; Tanya Gray; Bert Verslyppe; Nikos Kyrpides; Karin Dietrich; Frank Oliver Glöckner; James Cole; Ryan Farris; Lynn M Schriml; Paul De Vos; Bernard De Baets; Dawn Field; Peter Dawyndt
Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers.
Omics : a journal of integrative biology 2008;12(2):123-7.
2008: Renzo Kottmann; Tanya Gray; Sean Murphy; Leonid Kagan; Saul Kravitz; Thierry Lombardot; Dawn Field; Frank Oliver Glöckner
A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML).
Omics : a journal of integrative biology 2008;12(2):115-21.
2008: Cao Xuan Hieu; Birgit Voigt; Dirk Albrecht; Dörte Becher; Thierry Lombardot; Frank Oliver Glöckner; Rudolf Amann; Michael Hecker; Thomas Schweder
Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T.
Proteomics 2008;8(8):1608-23.
2008: Michael Richter; Thierry Lombardot; Ivaylo Kostadinov; Renzo Kottmann; Melissa Beth Duhaime; Jörg Peplies; Frank Oliver Glöckner
JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes.
BMC bioinformatics 2008;9():177.
2007: Dagmar Woebken; Hanno Teeling; Patricia Wecker; Alexandra Dumitriu; Ivaylo Kostadinov; Edward F Delong; Rudolf Amann; Frank Oliver Glöckner
Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.
The ISME journal 2007;1(5):419-35.
2007: Marc Mussmann; Fen Ze Hu; Michael Richter; Dirk de Beer; André Preisler; Bo Barker Jørgensen; Marcel Huntemann; Frank Oliver Glöckner; Rudolf Amann; Werner J H Koopman; Roger S Lasken; Benjamin Janto; Justin Hogg; Paul Stoodley; Robert Boissy; Garth D Ehrlich
Insights into the genome of large sulfur bacteria revealed by analysis of single filaments.
PLoS biology 2007;5(9):e230.
2007: Michael Richter; Michael Kube; Dennis A Bazylinski; Thierry Lombardot; Frank Oliver Glöckner; Richard Reinhardt; Dirk Schüler
Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function.
Journal of bacteriology 2007;189(13):4899-910.
2007: Bernhard M Fuchs; Stefan Spring; Hanno Teeling; Christian Quast; Jörg Wulf; Martha Schattenhofer; Shi Yan; Steve Ferriera; Justin Johnson; Frank Oliver Glöckner; Rudolf Amann
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(8):2891-6.
2007: Thierry Lombardot; Renzo Kottmann; Gregory Giuliani; Andrea de Bono; Nans Addor; Frank Oliver Glöckner
MetaLook: a 3D visualisation software for marine ecological genomics.
BMC bioinformatics 2007;8():406.
2007: Elmar Pruesse; Christian Quast; Katrin Knittel; Bernhard M Fuchs; Wolfgang Ludwig; Jörg Peplies; Frank Oliver Glöckner
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Nucleic acids research 2007;35(21):7188-96.
2007: Michael Borriss; Thierry Lombardot; Frank Oliver Glöckner; Dörte Becher; Dirk Albrecht; Thomas Schweder
Genome and proteome characterization of the psychrophilic Flavobacterium bacteriophage 11b.
Extremophiles : life under extreme conditions 2007;11(1):95-104.
2006: Margarete Bauer; Michael Kube; Hanno Teeling; Michael Richter; Thierry Lombardot; Elke Allers; Chris Würdemann; Christian Quast; Heiner Kuhl; Florian Knaust; Dagmar Woebken; Kerstin Bischof; Marc Mussmann; Jomuna V Choudhuri; Folker Meyer; Richard Reinhardt; Rudolf Amann; Frank Oliver Glöckner
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.
Environmental microbiology 2006;8(12):2201-13.
2006: Sabrina Schübbe; Chris Würdemann; Jörg Peplies; Udo Heyen; Cathrin Wawer; Frank Oliver Glöckner; Dirk Schüler
Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense.
Applied and environmental microbiology 2006;72(9):5757-65.
2006: Jörg Peplies; Christine Lachmund; Frank Oliver Glöckner; Werner Manz
A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities.
Applied and environmental microbiology 2006;72(7):4829-38.
2006: Chris Würdemann; Jörg Peplies; Sabrina Schübbe; Andreas Ellrott; Dirk Schüler; Frank Oliver Glöckner
Evaluation of gene expression analysis using RNA-targeted partial genome arrays.
Systematic and applied microbiology 2006;29(5):349-57.
2006: Thierry Lombardot; Renzo Kottmann; Hauke Pfeffer; Michael Richter; Hanno Teeling; Christian Quast; Frank Oliver Glöckner
Megx.net--database resources for marine ecological genomics.
Nucleic acids research 2006;34(Database issue):D390-3.
2005: Anke Meyerdierks; Michael Kube; Thierry Lombardot; Katrin Knittel; Margarete Bauer; Frank Oliver Glöckner; Richard Reinhardt; Rudolf Amann
Insights into the genomes of archaea mediating the anaerobic oxidation of methane.
Environmental microbiology 2005;7(12):1937-51.
2005: Sabine R Wallner; Marga Bauer; Chris Würdemann; Patricia Wecker; Frank Oliver Glöckner; Kurt Faber
Highly enantioselective sec-alkyl sulfatase activity of the marine planctomycete Rhodopirellula baltica shows retention of configuration.
Angewandte Chemie (International ed. in English) 2005;44(39):6381-4.
2005: Marc Mussmann; Michael Richter; Thierry Lombardot; Anke Meyerdierks; Jan Kuever; Michael Kube; Frank Oliver Glöckner; Rudolf Amann
Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer.
Journal of bacteriology 2005;187(20):7126-37.
2005: Dörte Gade; Dorothea Theiss; Daniela Lange; Ekaterina Mirgorodskaya; Thierry Lombardot; Frank Oliver Glöckner; Michael Kube; Richard Reinhardt; Rudolf Amann; Hans Lehrach; Ralf Rabus; Johan Gobom
Towards the proteome of the marine bacterium Rhodopirellula baltica: mapping the soluble proteins.
Proteomics 2005;5(14):3654-71.
2005: Christine Gernert; Frank Oliver Glöckner; Georg Krohne; Ute Hentschel
Microbial diversity of the freshwater sponge Spongilla lacustris.
Microbial ecology 2005;50(2):206-12.
2005: Yadhu Kumar; Ralf Westram; Sebastian Behrens; Bernhard Fuchs; Frank Oliver Glöckner; Rudolf Amann; Harald Meier; Wolfgang Ludwig
Graphical representation of ribosomal RNA probe accessibility data using ARB software package.
BMC bioinformatics 2005;6():61.
2005: Thierry Lombardot; Margarete Bauer; Hanno Teeling; Rudolf Amann; Frank Oliver Glöckner
The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons.
FEMS microbiology letters 2005;242(1):137-45.
2004: Margarete Bauer; Thierry Lombardot; Hanno Teeling; Naomi L Ward; Rudolf Amann; Frank Oliver Glöckner
Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum.
Journal of molecular evolution 2004;59(5):571-86.
2004: Hanno Teeling; Jost Waldmann; Thierry Lombardot; Margarete Bauer; Frank Oliver Glöckner
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.
BMC bioinformatics 2004;5():163.
2004: Jörg Peplies; Frank Oliver Glöckner; Rudolf Amann; Wolfgang Ludwig
Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton.
Systematic and applied microbiology 2004;27(5):573-80.
2004: Hanno Teeling; Anke Meyerdierks; Margarete Bauer; Rudolf Amann; Frank Oliver Glöckner
Application of tetranucleotide frequencies for the assignment of genomic fragments.
Environmental microbiology 2004;6(9):938-47.
2004: Ralf Rabus; Andreas Ruepp; Tancred Frickey; Thomas Rattei; Berthold Fartmann; M Stark; Margarete Bauer; Arne Zibat; Thierry Lombardot; I Becker; J Amann; K Gellner; Hanno Teeling; W D Leuschner; Frank Oliver Glöckner; A N Lupas; Rudolf Amann; Hans-Peter Klenk
The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments.
Environmental microbiology 2004;6(9):887-902.
2004: Anja Heuchert; Frank Oliver Glöckner; Rudolf Amann; Ulrich Fischer
Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica).
Systematic and applied microbiology 2004;27(4):399-406.
2004: Jörg Peplies; Stanley C K Lau; Jakob Pernthaler; Rudolf Amann; Frank Oliver Glöckner
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.
Environmental microbiology 2004;6(6):638-45.
2004: Hanno Teeling; Thierry Lombardot; Margarete Bauer; Wolfgang Ludwig; Frank Oliver Glöckner
Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees.
International journal of systematic and evolutionary microbiology 2004;54(Pt 3):791-801.
2004: Dörte Gade; Heinz Schlesner; Frank Oliver Glöckner; Rudolf Amann; S Pfeiffer; Michael Thomm
Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes.
Microbial ecology 2004;47(3):243-51.
2003: Martin Krüger; Anke Meyerdierks; Frank Oliver Glöckner; Rudolf Amann; Friedrich Widdel; Michael Kube; Richard Reinhardt; Jörg Kahnt; Reinhard Böcher; Rudolf K Thauer; Seigo Shima
A conspicuous nickel protein in microbial mats that oxidize methane anaerobically.
Nature 2003;426(6968):878-81.
2003: Frank Oliver Glöckner; Michael Kube; Margarete Bauer; Hanno Teeling; Thierry Lombardot; Wolfgang Ludwig; Dörte Gade; Alfred Beck; Katja Borzym; K Heitmann; Ralf Rabus; Heinz Schlesner; Rudolf Amann; Richard Reinhardt
Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(14):8298-303.
2003: Jörg Peplies; Frank Oliver Glöckner; Rudolf Amann
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes.
Applied and environmental microbiology 2003;69(3):1397-407.
2003: Olaf Kniemeyer; Thomas Fischer; Heinz Wilkes; Frank Oliver Glöckner; Friedrich Widdel
Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium.
Applied and environmental microbiology 2003;69(2):760-8.
2002: Ralf Rabus; Dörte Gade; Roger Helbig; Margarete Bauer; Frank Oliver Glöckner; Michael Kube; Heinz Schlesner; Richard Reinhardt; Rudolf Amann
Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach.
Proteomics 2002;2(6):649-55.
2001: H Eilers; Jakob Pernthaler; Jörg Peplies; Frank Oliver Glöckner; Gunnar Gerdts; Rudolf Amann
Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton.
Applied and environmental microbiology 2001;67(11):5134-42.
2001: Jakob Pernthaler; Thomas Posch; Karel Simek; Jaroslav Vrba; Annelie Pernthaler; Frank Oliver Glöckner; Ulrich Nübel; Roland Psenner; Rudolf Amann
Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture.
Applied and environmental microbiology 2001;67(5):2145-55.
2001: AV Surkov; Galina Dubinina; Anatoly M Lysenko; Frank Oliver Glöckner; Jan Kuever
Dethiosulfovibrio russensis sp. nov., Dethosulfovibrio marinus sp. nov. and Dethosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments.
International journal of systematic and evolutionary microbiology 2001;51(Pt 2):327-37.
2000: Frank Oliver Glöckner; E Zaichikov; N Belkova; L Denissova; Jakob Pernthaler; Annelie Pernthaler; Rudolf Amann
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria.
Applied and environmental microbiology 2000;66(11):5053-65.
2000: Bernhard M Fuchs; Frank Oliver Glöckner; Jörg Wulf; Rudolf Amann
Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes.
Applied and environmental microbiology 2000;66(8):3603-7.
2000: H Eilers; Jakob Pernthaler; Frank Oliver Glöckner; Rudolf Amann
Culturability and In situ abundance of pelagic bacteria from the North Sea.
Applied and environmental microbiology 2000;66(7):3044-51.
2000: R Weller; Frank Oliver Glöckner; Rudolf Amann
16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides.
Systematic and applied microbiology 2000;23(1):107-14.
1999: Frank Oliver Glöckner; Bernhard M Fuchs; Rudolf Amann
Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.
Applied and environmental microbiology 1999;65(8):3721-6.
1999: Frank Oliver Glöckner; H D Babenzien; Jörg Wulf; Rudolf Amann
Phylogeny and diversity of Achromatium oxaliferum.
Systematic and applied microbiology 1999;22(1):28-38.
1998: Frank Oliver Glöckner; H D Babenzien; Rudolf Amann
Phylogeny and identification in situ of Nevskia ramosa.
Applied and environmental microbiology 1998;64(5):1895-901.