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Frank Oliver Glöckner
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31
Amann, Rudolf
17
Lombardot, Thierry
12
Peplies, Jörg
11
Teeling, Hanno
10
Bauer, Margarete
8
Richter, Michael
8
Ludwig, Wolfgang
8
Kube, Michael
7
Reinhardt, Richard
5
Pernthaler, Jakob
5
Quast, Christian
5
Rabus, Ralf
5
Meyerdierks, Anke
4
Fuchs, Bernhard
4
Gade, Dörte
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All Publications
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2009: Strittmatter Axel W; Liesegang Heiko; Rabus Ralf; Decker Iwona; Amann Judith; Andres Sönke; Henne Anke; Fricke Wolfgang Florian; Martinez-Arias Rosa; Bartels Daniela; Goesmann Alexander; Krause Lutz; Pühler Alfred; Klenk Hans-Peter; Richter Michael; Schüler Margarete; Glöckner Frank Oliver; Meyerdierks Anke; Gottschalk Gerhard; Amann Rudolf
Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide.
Environmental microbiology 2009;11(5):1038-55.
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2009: Wecker Patricia; Klockow Christine; Ellrott Andreas; Quast Christian; Langhammer Philipp; Harder Jens; Glöckner Frank Oliver
Transcriptional response of the model planctomycete Rhodopirellula baltica SH1(T) to changing environmental conditions.
BMC genomics 2009;10():410.
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2008: Amaral-Zettler Linda; Peplies Jörg; Ramette Alban; Fuchs Bernhard; Ludwig Wolfgang; Glöckner Frank Oliver
Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.
Systematic and applied microbiology 2008;31(4):258-68.
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2008: Peplies Jörg; Kottmann Renzo; Ludwig Wolfgang; Glöckner Frank Oliver
A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes.
Systematic and applied microbiology 2008;31(4):251-7.
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2008: Yarza Pablo; Richter Michael; Peplies Jörg; Euzeby Jean; Amann Rudolf; Schleifer Karl-Heinz; Ludwig Wolfgang; Glöckner Frank Oliver; Rosselló-Móra Ramon
The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Systematic and applied microbiology 2008;31(4):241-50.
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2008: Garrity George M; Field Dawn; Kyrpides Nikos; Hirschman Lynette; Sansone Susanna-Assunta; Angiuoli Samuel; Cole James R; Glöckner Frank Oliver; Kolker Eugene; Kowalchuk George; Moran Mary Ann; Ussery Dave; White Owen
Toward a standards-compliant genomic and metagenomic publication record.
Omics : a journal of integrative biology 2008;12(2):157-60.
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2008: Field Dawn; Garrity George M; Sansone Susanna-Assunta; Sterk Peter; Gray Tanya; Kyrpides Nikos; Hirschman Lynette; Glöckner Frank Oliver; Kottmann Renzo; Angiuoli Sam; White Owen; Dawyndt Peter; Thomson Nick; Gil Inigo San; Morrison Norman; Tatusova Tatiana; Mizrachi Ilene; Vaughan Robert; Cochrane Guy; Kagan Leonid; Murphy Sean; Schriml Lynn;
Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.
Omics : a journal of integrative biology 2008;12(2):109-13.
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2008: Field Dawn; Glöckner Frank Oliver; Garrity George M; Gray Tanya; Sterk Peter; Cochrane Guy; Vaughan Robert; Kolker Eugene; Kottmann Renzo; Kyrpides Nikos; Angiuoli Sam; Dawyndt Peter; Guralnick Robert; Goldstein Philip; Hall Neil; Hirschman Lynette; Kravitz Saul; Lister Allyson L; Markowitz Victor; Thomson Nick; Whetzel Trish
Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.
Omics : a journal of integrative biology 2008;12(2):101-8.
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2008: Van Brabant Bart; Gray Tanya; Verslyppe Bert; Kyrpides Nikos; Dietrich Karin; Glöckner Frank Oliver; Cole James; Farris Ryan; Schriml Lynn M; De Vos Paul; De Baets Bernard; Field Dawn; Dawyndt Peter;
Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers.
Omics : a journal of integrative biology 2008;12(2):123-7.
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2008: Kottmann Renzo; Gray Tanya; Murphy Sean; Kagan Leonid; Kravitz Saul; Lombardot Thierry; Field Dawn; Glöckner Frank Oliver;
A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML).
Omics : a journal of integrative biology 2008;12(2):115-21.
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2008: Hieu Cao Xuan; Voigt Birgit; Albrecht Dirk; Becher Dörte; Lombardot Thierry; Glöckner Frank Oliver; Amann Rudolf; Hecker Michael; Schweder Thomas
Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T.
Proteomics 2008;8(8):1608-23.
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2008: Richter Michael; Lombardot Thierry; Kostadinov Ivaylo; Kottmann Renzo; Duhaime Melissa Beth; Peplies Jörg; Glöckner Frank Oliver
JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes.
BMC bioinformatics 2008;9():177.
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2007: Woebken Dagmar; Teeling Hanno; Wecker Patricia; Dumitriu Alexandra; Kostadinov Ivaylo; Delong Edward F; Amann Rudolf; Glöckner Frank O
Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.
The ISME journal 2007;1(5):419-35.
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2007: Mussmann Marc; Hu Fen Z; Richter Michael; de Beer Dirk; Preisler André; Jørgensen Bo B; Huntemann Marcel; Glöckner Frank Oliver; Amann Rudolf; Koopman Werner J H; Lasken Roger S; Janto Benjamin; Hogg Justin; Stoodley Paul; Boissy Robert; Ehrlich Garth D
Insights into the genome of large sulfur bacteria revealed by analysis of single filaments.
PLoS biology 2007;5(9):e230.
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2007: Richter Michael; Kube Michael; Bazylinski Dennis A; Lombardot Thierry; Glöckner Frank Oliver; Reinhardt Richard; Schüler Dirk
Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function.
Journal of bacteriology 2007;189(13):4899-910.
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2007: Fuchs Bernhard M; Spring Stefan; Teeling Hanno; Quast Christian; Wulf Jörg; Schattenhofer Martha; Yan Shi; Ferriera Steve; Johnson Justin; Glöckner Frank Oliver; Amann Rudolf
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(8):2891-6.
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2007: Borriss Michael; Lombardot Thierry; Glöckner Frank Oliver; Becher Dörte; Albrecht Dirk; Schweder Thomas
Genome and proteome characterization of the psychrophilic Flavobacterium bacteriophage 11b.
Extremophiles : life under extreme conditions 2007;11(1):95-104.
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2007: Lombardot Thierry; Kottmann Renzo; Giuliani Gregory; de Bono Andrea; Addor Nans; Glöckner Frank Oliver
MetaLook: a 3D visualisation software for marine ecological genomics.
BMC bioinformatics 2007;8():406.
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2007: Pruesse Elmar; Quast Christian; Knittel Katrin; Fuchs Bernhard M; Ludwig Wolfgang; Peplies Jörg; Glöckner Frank Oliver
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Nucleic acids research 2007;35(21):7188-96.
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2006: Bauer Margarete; Kube Michael; Teeling Hanno; Richter Michael; Lombardot Thierry; Allers Elke; Würdemann Chris A; Quast Christian; Kuhl Heiner; Knaust Florian; Woebken Dagmar; Bischof Kerstin; Mussmann Marc; Choudhuri Jomuna V; Meyer Folker; Reinhardt Richard; Amann Rudolf I; Glöckner Frank Oliver
Whole genome analysis of the marine Bacteroidetes'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter.
Environmental microbiology 2006;8(12):2201-13.
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2006: Schübbe Sabrina; Würdemann Chris; Peplies Jörg; Heyen Udo; Wawer Cathrin; Glöckner Frank Oliver; Schüler Dirk
Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense.
Applied and environmental microbiology 2006;72(9):5757-65.
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2006: Peplies Jörg; Lachmund Christine; Glöckner Frank Oliver; Manz Werner
A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities.
Applied and environmental microbiology 2006;72(7):4829-38.
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2006: Würdemann Chris; Peplies Jörg; Schübbe Sabrina; Ellrott Andreas; Schüler Dirk; Glöckner Frank Oliver
Evaluation of gene expression analysis using RNA-targeted partial genome arrays.
Systematic and applied microbiology 2006;29(5):349-57.
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2006: Lombardot Thierry; Kottmann Renzo; Pfeffer Hauke; Richter Michael; Teeling Hanno; Quast Christian; Glöckner Frank Oliver
Megx.net--database resources for marine ecological genomics.
Nucleic acids research 2006;34(Database issue):D390-3.
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2005: Meyerdierks Anke; Kube Michael; Lombardot Thierry; Knittel Katrin; Bauer Margarete; Glöckner Frank Oliver; Reinhardt Richard; Amann Rudolf
Insights into the genomes of archaea mediating the anaerobic oxidation of methane.
Environmental microbiology 2005;7(12):1937-51.
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2005: Mussmann Marc; Richter Michael; Lombardot Thierry; Meyerdierks Anke; Kuever Jan; Kube Michael; Glöckner Frank Oliver; Amann Rudolf
Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer.
Journal of bacteriology 2005;187(20):7126-37.
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2005: Wallner Sabine R; Bauer Marga; Würdemann Chris; Wecker Patricia; Glöckner Frank O; Faber Kurt
Highly enantioselective sec-alkyl sulfatase activity of the marine planctomycete Rhodopirellula baltica shows retention of configuration.
Angewandte Chemie (International ed. in English) 2005;44(39):6381-4.
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2005: Gade Dörte; Theiss Dorothea; Lange Daniela; Mirgorodskaya Ekaterina; Lombardot Thierry; Glöckner Frank Oliver; Kube Michael; Reinhardt Richard; Amann Rudolf; Lehrach Hans; Rabus Ralf; Gobom Johan
Towards the proteome of the marine bacterium Rhodopirellula baltica: mapping the soluble proteins.
Proteomics 2005;5(14):3654-71.
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2005: Gernert Christine; Glöckner Frank Oliver; Krohne Georg; Hentschel Ute
Microbial diversity of the freshwater sponge Spongilla lacustris.
Microbial ecology 2005;50(2):206-12.
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2005: Lombardot Thierry; Bauer Margarete; Teeling Hanno; Amann Rudolf; Glöckner Frank Oliver
The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons.
FEMS microbiology letters 2005;242(1):137-45.
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2005: Kumar Yadhu; Westram Ralf; Behrens Sebastian; Fuchs Bernhard; Glöckner Frank Oliver; Amann Rudolf; Meier Harald; Ludwig Wolfgang
Graphical representation of ribosomal RNA probe accessibility data using ARB software package.
BMC bioinformatics 2005;6():61.
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2004: Bauer Margarete; Lombardot Thierry; Teeling Hanno; Ward Naomi L; Amann Rudolf I; Glöckner Frank O
Archaea-like genes for C1-transfer enzymes in Planctomycetes: phylogenetic implications of their unexpected presence in this phylum.
Journal of molecular evolution 2004;59(5):571-86.
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2004: Teeling Hanno; Waldmann Jost; Lombardot Thierry; Bauer Margarete; Glöckner Frank Oliver
TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.
BMC bioinformatics 2004;5():163.
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2004: Peplies Jörg; Glöckner Frank Oliver; Amann Rudolf; Ludwig Wolfgang
Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton.
Systematic and applied microbiology 2004;27(5):573-80.
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2004: Teeling Hanno; Meyerdierks Anke; Bauer Margarete; Amann Rudolf; Glöckner Frank Oliver
Application of tetranucleotide frequencies for the assignment of genomic fragments.
Environmental microbiology 2004;6(9):938-47.
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2004: Rabus R; Ruepp A; Frickey T; Rattei T; Fartmann B; Stark M; Bauer M; Zibat A; Lombardot T; Becker I; Amann J; Gellner K; Teeling H; Leuschner W D; Glöckner F-O; Lupas A N; Amann R; Klenk H-P
The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments.
Environmental microbiology 2004;6(9):887-902.
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2004: Heuchert Anja; Glöckner Frank Oliver; Amann Rudolf; Fischer Ulrich
Psychrobacter nivimaris sp. nov., a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica).
Systematic and applied microbiology 2004;27(4):399-406.
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2004: Peplies Jörg; Lau Stanley Chun Kwan; Pernthaler Jakob; Amann Rudolf; Glöckner Frank Oliver
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.
Environmental microbiology 2004;6(6):638-45.
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2004: Teeling Hanno; Lombardot Thierry; Bauer Margarete; Ludwig Wolfgang; Glöckner Frank Oliver
Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees.
International journal of systematic and evolutionary microbiology 2004;54(Pt 3):791-801.
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2004: Gade D; Schlesner H; Glöckner F O; Amann R; Pfeiffer S; Thomm M
Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNA-targeted probes.
Microbial ecology 2004;47(3):243-51.
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2003: Krüger Martin; Meyerdierks Anke; Glöckner Frank Oliver; Amann Rudolf; Widdel Friedrich; Kube Michael; Reinhardt Richard; Kahnt Jörg; Böcher Reinhard; Thauer Rudolf K; Shima Seigo
A conspicuous nickel protein in microbial mats that oxidize methane anaerobically.
Nature 2003;426(6968):878-81.
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2003: Glöckner F O; Kube M; Bauer M; Teeling H; Lombardot T; Ludwig W; Gade D; Beck A; Borzym K; Heitmann K; Rabus R; Schlesner H; Amann R; Reinhardt R
Complete genome sequence of the marine planctomycete Pirellula sp. strain 1.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(14):8298-303.
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2003: Peplies Jörg; Glöckner Frank Oliver; Amann Rudolf
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes.
Applied and environmental microbiology 2003;69(3):1397-407.
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2003: Kniemeyer Olaf; Fischer Thomas; Wilkes Heinz; Glöckner Frank Oliver; Widdel Friedrich
Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium.
Applied and environmental microbiology 2003;69(2):760-8.
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2002: Rabus Ralf; Gade Dörte; Helbig Roger; Bauer Margarete; Glöckner Frank Oliver; Kube Michael; Schlesner Heinz; Reinhardt Richard; Amann Rudolf
Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach.
Proteomics 2002;2(6):649-55.
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2001: Eilers H; Pernthaler J; Peplies J; Glöckner F O; Gerdts G; Amann R
Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton.
Applied and environmental microbiology 2001;67(11):5134-42.
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2001: Pernthaler J; Posch T; Simek K; Vrba J; Pernthaler A; Glöckner F O; Nübel U; Psenner R; Amann R
Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture.
Applied and environmental microbiology 2001;67(5):2145-55.
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2001: Surkov A V; Dubinina G A; Lysenko A M; Glöckner F O; Kuever J
Dethiosulfovibrio russensis sp. nov., Dethosulfovibrio marinus sp. nov. and Dethosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments.
International journal of systematic and evolutionary microbiology 2001;51(Pt 2):327-37.
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2000: Glöckner F O; Zaichikov E; Belkova N; Denissova L; Pernthaler J; Pernthaler A; Amann R
Comparative 16S rRNA analysis of lake bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of actinobacteria.
Applied and environmental microbiology 2000;66(11):5053-65.
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2000: Fuchs B M; Glöckner F O; Wulf J; Amann R
Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes.
Applied and environmental microbiology 2000;66(8):3603-7.
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2000: Eilers H; Pernthaler J; Glöckner F O; Amann R
Culturability and In situ abundance of pelagic bacteria from the North Sea.
Applied and environmental microbiology 2000;66(7):3044-51.
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2000: Weller R; Glöckner F O; Amann R
16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides.
Systematic and applied microbiology 2000;23(1):107-14.
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1999: Glöckner F O; Fuchs B M; Amann R
Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.
Applied and environmental microbiology 1999;65(8):3721-6.
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1999: Glöckner F O; Babenzien H D; Wulf J; Amann R
Phylogeny and diversity of Achromatium oxaliferum.
Systematic and applied microbiology 1999;22(1):28-38.
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1998: Glöckner F O; Babenzien H D; Amann R
Phylogeny and identification in situ of Nevskia ramosa.
Applied and environmental microbiology 1998;64(5):1895-901.
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