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Sean Grimmond

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Oligonucleotide Array Sequence Analysis

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Multiple Endocrine Neoplasia Type 1

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John M Atack; Karrera Y Djoko; Jennifer L Edwards; Sean M Grimmond; Norain H M Hasri; Michael P Jennings; Ulrike Kappler; Dk Seti Maimonah Pg Othman; Yogitha N Srikhanta; Christopher T Steichen; Rachel N vanden Hoven; Jessica P Welch; Michael A Apicella; Alastair G McEwan
Characterization of an ntrX Mutant of Neisseria gonorrhoeae Reveals a Response Regulator That Controls Expression of Respiratory Enzymes in Oxidase-Positive Proteobacteria.
Ryan J Taft; Marjo S van der Knaap; Adeline Vanderver; Ishwar C Verma; Truus E M Abbink; Marianna R Bevova; Susan Blaser; Joanna Crawford; Stephen A Damiani; Irenaeus F M de Coo; Sean M Grimmond; Monica Juneja; Richard J Leventer; Paul J Lockhart; David Miller; Kate Pope; Petra J W Pouwels; Prab Prabhakar; Julian Raiman; Tena Rosser; Kelin Ru; Johanna Schmidt; Cas Simons; Nicole I Wolf
Mutations in DARS Cause Hypomyelination with Brain Stem and Spinal Cord Involvement and Leg Spasticity.
Cas Simons; Jürgen Sperner; Ryan J Taft; Asako Takanohashi; Davide Tonduti; Rudy Van Coster; Marjo S van der Knaap; Ljubica Caldovic; Robert S Chudnow; Joanna Crawford; Joseph M Devaney; Sean M Grimmond; Jill Kisler; Lieven Lagae; Nathan McNeil; David Miller; Kelin Ru; Raphael Schiffmann; Johanna L Schmidt; Nicole I Wolf; Adeline Vanderver
A De Novo Mutation in the β-Tubulin Gene TUBB4A Results in the Leukoencephalopathy Hypomyelination with Atrophy of the Basal Ganglia and Cerebellum.

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All Publications

2013: John M Atack; Karrera Y Djoko; Jennifer L Edwards; Sean M Grimmond; Norain H M Hasri; Michael P Jennings; Ulrike Kappler; Dk Seti Maimonah Pg Othman; Yogitha N Srikhanta; Christopher T Steichen; Rachel N vanden Hoven; Jessica P Welch; Michael A Apicella; Alastair G McEwan
Characterization of an ntrX Mutant of Neisseria gonorrhoeae Reveals a Response Regulator That Controls Expression of Respiratory Enzymes in Oxidase-Positive Proteobacteria.
Journal of bacteriology 2013;195(11):2632-41.
2013: Ryan J Taft; Marjo S van der Knaap; Adeline Vanderver; Ishwar C Verma; Truus E M Abbink; Marianna R Bevova; Susan Blaser; Joanna Crawford; Stephen A Damiani; Irenaeus F M de Coo; Sean M Grimmond; Monica Juneja; Richard J Leventer; Paul J Lockhart; David Miller; Kate Pope; Petra J W Pouwels; Prab Prabhakar; Julian Raiman; Tena Rosser; Kelin Ru; Johanna Schmidt; Cas Simons; Nicole I Wolf
Mutations in DARS Cause Hypomyelination with Brain Stem and Spinal Cord Involvement and Leg Spasticity.
American journal of human genetics 2013;92(5):774-80.
2013: Cas Simons; Jürgen Sperner; Ryan J Taft; Asako Takanohashi; Davide Tonduti; Rudy Van Coster; Marjo S van der Knaap; Ljubica Caldovic; Robert S Chudnow; Joanna Crawford; Joseph M Devaney; Sean M Grimmond; Jill Kisler; Lieven Lagae; Nathan McNeil; David Miller; Kelin Ru; Raphael Schiffmann; Johanna L Schmidt; Nicole I Wolf; Adeline Vanderver
A De Novo Mutation in the β-Tubulin Gene TUBB4A Results in the Leukoencephalopathy Hypomyelination with Atrophy of the Basal Ganglia and Cerebellum.
American journal of human genetics 2013;92(5):767-73.
2013: Keerthana Krishnan; Sunil R Lakhani; Mythily Mariasegaram; Hilary C Martin; Katia Nones; Peter T Simpson; Anita L Steptoe; Alexander Vlassov; Nic Waddell; Shivangi Wani; Nicole Cloonan; Brian Gabrielli; Sean M Grimmond
MicroRNA-182-5p targets a network of genes involved in DNA repair.
RNA (New York, N.Y.) 2013;19(2):230-42.
2012: Jing Yu; Timothy Lawrence Bailey; Mary Duah; Diane Faria; Kylie Georgas; Paul A Gray; Sean M Grimmond; Jin-Jin Guo; Jennifer K Hansard; Jan P Junker; A Michaela Krautzberger; Melissa H Little; Qiufu Ma; Philip Machanick; Jill McMahon; Qun Ren; David H Rowitch; Bree Rumballe; Karl Staser; Charles D Stiles; Rathi D Thiagarajan; Michael T Valerius; Alexander van Oudenaarden; Joe Vaughan; Andrew P McMahon
Identification of molecular compartments and genetic circuitry in the developing mammalian kidney.
Development (Cambridge, England) 2012;139(10):1863-73.
2012: Kate Schroder; Colin A Semple; Harukazu Suzuki; Martin S Taylor; Altuna Akalin; John Kenneth Baillie; Nilesh J Bokil; piero carninci; Carsten O Daub; Lynsey Fairbairn; Geoffrey J Faulkner; Nick Goldman; M Milena Gongora; Sean M Grimmond; Yoshihide Hayashizaki; David A Hume; Katharine M Irvine; Ronan Kapetanovic; Hideya Kawaji; Larisa I Labzin; Kim-Anh Le Cao; Boris Lenhard; Kelly-Anne Masterman; Geoffrey J McLachlan; Matthew J Sweet
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(16):E944-53.
2012: Sarah Song; Darrin Taylor; Nic Waddell; Peter Wilson; Scott Wood; Jianmin Wu; Qinying Xu; Mark Pinese; Matthew Anderson; Andrew V Biankin; Mark J Cowley; Lynn Fink; Anthony J Gill; Sean M Grimmond; Ivon Harliwong; Oliver Holmes; Amber L Johns; Karin S Kassahn; Conrad Leonard; David Miller; Felicity Newell; Katia Nones; Marina Pajic; John Pearson
qpure: A tool to estimate tumor cellularity from genome-wide single-nucleotide polymorphism profiles.
PloS one 2012;7(9):e45835.
2012: Huijun Chen; Hansheng Chiu; Marcel E Dinger; Sean M Grimmond; Peter Koopman; Emmanuelle Lesieur; Melissa H Little; James S Palmer; Alexandra Schulz; Cassy Spiller; Rathi D Thiagarajan; Dagmar Wilhelm
Identification of novel markers of mouse fetal ovary development.
PloS one 2012;7(7):e41683.
2011: Gabriel Kolle; Scott Kuersten; Andrew L Laslett; Kevin McKernan; Ehsan Nourbakhsh; Jill L Shepherd; Darrin F Taylor; Shivangi Wani; David L A Wood; Qi Zhou; Hun S Chy; Nicole Cloonan; brooke gardiner; Karin S Kassahn; Sean M Grimmond
Deep-transcriptome and ribonome sequencing redefines the molecular networks of pluripotency and the extracellular space in human embryonic stem cells.
Genome research 2011;21(12):2014-25.
2011: Karin S Kassahn; Nic Waddell; Sean M Grimmond
Sequencing transcriptomes in toto.
Integrative biology : quantitative biosciences from nano to macro 2011;3(5):522-8.
2011: C E Smart; A Wronski; J D French; S L Edwards; M-L Asselin-Labat; N Waddell; K Peters; B L Brewster; K Brooks; K Simpson; N Manning; Sunil R Lakhani; Sean M Grimmond; G J Lindeman; J E Visvader; Matthew A Brown
Analysis of Brca1-deficient mouse mammary glands reveals reciprocal regulation of Brca1 and c-kit.
Oncogene 2011;30(13):1597-607.
2011: David L A Wood; Qinying Xu; John Pearson; Nicole Cloonan; Sean M Grimmond
X-MATE: a flexible system for mapping short read data.
Bioinformatics (Oxford, England) 2011;27(4):580-1.
2011: Nicole Cloonan; brooke gardiner; Catalin Barbacioru; Kelli S Bramlett; Jian Gu; Sheila Heater; Jeff Ichikawa; Karin S Kassahn; Keerthana Krishnan; Scott Kuersten; K Lea; Clarence Lee; Hilary C Martin; Nicholas A Matigian; Kevin McKernan; Katia Nones; Ehsan Nourbakhsh; Jill Shepherd; Jason A Steen; Anita L Steptoe; Nic Waddell; Xiaohui Wang; Shivangi Wani; David L Wood; Qinying Xu; Sean M Grimmond
MicroRNAs and their isomiRs function cooperatively to target common biological pathways.
Genome biology 2011;12(12):R126.
2011: Rathi D Thiagarajan; Shivangi Wani; Han S Chiu; Nicole Cloonan; brooke gardiner; Kylie Georgas; Gabriel Kolle; Keerthana Krishnan; Melissa H Little; John S Mattick; Tim R Mercer; Ehsan Nourbakhsh; Bree Rumballe; Jason A Steen; Dave Tang; Sean M Grimmond
Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling.
BMC genomics 2011;12():441.
2011: Rathi D Thiagarajan; Kylie Georgas; Bree Rumballe; Emmanuelle Lesieur; Han Sheng Chiu; Darrin Taylor; Dave Tang; Sean M Grimmond; Melissa H Little
Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways.
PloS one 2011;6(2):e17286.
2010: Tim R Mercer; Marcel Dinger; Cameron P Bracken; Gabriel Kolle; Jan M Szubert; Darren J Korbie; Marjan E Askarian-Amiri; brooke gardiner; Gregory J Goodall; Sean M Grimmond; John S Mattick
Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome.
Genome research 2010;20(12):1639-50.
2010: Nicole Cloonan; Nic Waddell; Sean M Grimmond
The clinical potential and challenges of sequencing cancer genomes for personalized medical genomics.
IDrugs : the investigational drugs journal 2010;13(11):778-81.
2010: Nicole Cloonan; Sean M Grimmond
Simplifying complexity.
Nature methods 2010;7(10):793-5.
2010: Tung-Liang Chung; Jennifer P Turner; Nilay Y Thaker; Gabriel Kolle; Justin J Cooper-White; Sean M Grimmond; Martin F Pera; Ernst Wolvetang
Ascorbate promotes epigenetic activation of CD30 in human embryonic stem cells.
Stem cells (Dayton, Ohio) 2010;28(10):1782-93.
2010: Tung-Liang Chung; Romulo M Brena; Gabriel Kolle; Sean M Grimmond; Benjamin P Berman; Peter W Laird; Martin F Pera; Ernst Wolvetang
Vitamin C promotes widespread yet specific DNA demethylation of the epigenome in human embryonic stem cells.
Stem cells (Dayton, Ohio) 2010;28(10):1848-55.
2010: S Adelia Lin; Gabriel Kolle; Sean M Grimmond; Qi Zhou; Elizabeth Doust; Melissa H Little; Bruce Aronow; Sharon D Ricardo; Martin F Pera; John F Bertram; Andrew L Laslett
Subfractionation of differentiating human embryonic stem cell populations allows the isolation of a mesodermal population enriched for intermediate mesoderm and putative renal progenitors.
Stem cells and development 2010;19(10):1637-48.
2010: Nic Waddell; Jeremy Arnold; Sibylle Cocciardi; Leonard da Silva; Anna Marsh; Joan Riley; Cameron N Johnstone; Mohammed Orloff; Guillaume Assie; Charis Eng; Lynne Reid; Patricia Keith; Max Yan; Stephen Fox; Peter Devilee; Andrew K Godwin; Frans B L Hogervorst; Fergus J. Couch; Sean M Grimmond; James M Flanagan; Kumkum Khanna; Peter T Simpson; Sunil R Lakhani; Georgia Chenevix-Trench
Subtypes of familial breast tumours revealed by expression and copy number profiling.
Breast cancer research and treatment 2010;123(3):661-77.
2010: Han Sheng Chiu; John C Szucsik; Kylie Georgas; Julia L Jones; Bree Rumballe; Dave Tang; Sean M Grimmond; Alfor G Lewis; Bruce Aronow; James L Lessard; Melissa H Little
Comparative gene expression analysis of genital tubercle development reveals a putative appendicular Wnt7 network for the epidermal differentiation.
Developmental biology 2010;344(2):1071-87.
2010: Michael R Tallack; Tom Whitington; Wai Shan Yuen; Elanor N Wainwright; Janelle R Keys; brooke gardiner; Ehsan Nourbakhsh; Nicole Cloonan; Sean M Grimmond; Timothy Lawrence Bailey; Andrew C Perkins
A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells.
Genome research 2010;20(8):1052-63.
2010: S J Le; M Milena Gongora; B Zhang; Sean M Grimmond; Gordon R Campbell; Julie H Campbell; Barbara E Rolfe
Gene expression profile of the fibrotic response in the peritoneal cavity.
Differentiation; research in biological diversity 2010;79(4-5):232-43.
2010: Sunder Sims-Lucas; Richard J Young; Gemma Martinez; Darrin Taylor; Sean M Grimmond; Rohan Teasdale; Melissa H Little; John F Bertram; Georgina Caruana
Redirection of renal mesenchyme to stromal and chondrocytic fates in the presence of TGF-beta2.
Differentiation; research in biological diversity 2010;79(4-5):272-84.
2010: Hsing-Ju Wu; Kate L Seib; Yogitha N Srikhanta; Jennifer Edwards; Stephen P Kidd; Tina L Maguire; Amanda Hamilton; Kuan-Tin Pan; He-Hsuan Hsiao; Chen-Wen Yao; Sean M Grimmond; Michael A Apicella; Alastair G McEwan; Andrew H-J Wang; Michael P Jennings
Manganese regulation of virulence factors and oxidative stress resistance in Neisseria gonorrhoeae.
Journal of proteomics 2010;73(5):899-916.
2010: Logan C Walker; Bryony A Thompson; Nic Waddell; Sean M Grimmond; Amanda B Spurdle
Use of DNA-damaging agents and RNA pooling to assess expression profiles associated with BRCA1 and BRCA2 mutation status in familial breast cancer patients.
PLoS genetics 2010;6(2):e1000850.
2010: Jacky Y Suen; Brooke Gardiner; Sean M Grimmond; David P Fairlie
Profiling gene expression induced by protease-activated receptor 2 (PAR2) activation in human kidney cells.
PloS one 2010;5(11):e13809.
2009: Gabriel Kolle; Mirabelle Ho; Qi Zhou; Hun S Chy; Keerthana Krishnan; Nicole Cloonan; Ivan Bertoncello; Andrew L Laslett; Sean M Grimmond
Identification of human embryonic stem cell surface markers by combined membrane-polysome translation state array analysis and immunotranscriptional profiling.
Stem cells (Dayton, Ohio) 2009;27(10):2446-56.
2009: Nicole Cloonan; Qinying Xu; Geoffrey J Faulkner; Darrin F Taylor; Dave Tang; Gabriel Kolle; Sean M Grimmond
RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data.
Bioinformatics (Oxford, England) 2009;25(19):2615-6.
2009: Takehiro Hashimoto; Michiel J L de Hoon; Sean M Grimmond; Carsten O Daub; Yoshihide Hayashizaki; Geoffrey J Faulkner
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
Bioinformatics (Oxford, England) 2009;25(19):2613-4.
2009: Kylie Georgas; Bree Rumballe; Michael T Valerius; Han Sheng Chiu; Rathi D Thiagarajan; Emmanuelle Lesieur; Bruce Aronow; Eric W Brunskill; Alexander N Combes; Dave Tang; Darrin Taylor; Sean M Grimmond; steven potter; Andrew P McMahon; Melissa H Little
Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment.
Developmental biology 2009;332(2):273-86.
2009: Ken C Pang; Marcel Dinger; Tim R Mercer; Lorenzo Malquori; Sean M Grimmond; Weisan Chen; John S Mattick
Genome-wide identification of long noncoding RNAs in CD8+ T cells.
Journal of immunology (Baltimore, Md. : 1950) 2009;182(12):7738-48.
2009: Ryan J Taft; Evgeny Glazov; Nicole Cloonan; Cas Simons; Stuart Stephen; Geoffrey J Faulkner; Timo Lassmann; Alistair Forrest; Sean M Grimmond; Kate Schroder; Katharine M Irvine; Takahiro Arakawa; Mari Nakamura; Atsutaka Kubosaki; Kengo Hayashida; Chika Kawazu; Mitsuyoshi Murata; Hiromi Nishiyori; Shiro Fukuda; Jun Kawai; Carsten O Daub; David A Hume; Harukazu Suzuki; Valerio Orlando; piero carninci; Yoshihide Hayashizaki; John S Mattick
Tiny RNAs associated with transcription start sites in animals.
Nature genetics 2009;41(5):572-8.
2009: Geoffrey J Faulkner; Yasumasa Kimura; Carsten O Daub; Shivangi Wani; Charles Plessy; Katharine M Irvine; Kate Schroder; Nicole Cloonan; Anita L Steptoe; Timo Lassmann; Kazunori Waki; Nadine Hornig; Takahiro Arakawa; Hazuki Takahashi; Jun Kawai; Alistair Forrest; Harukazu Suzuki; Yoshihide Hayashizaki; David A Hume; Valerio Orlando; Sean M Grimmond; piero carninci
The regulated retrotransposon transcriptome of mammalian cells.
Nature genetics 2009;41(5):563-71.
2009: Yogitha N Srikhanta; Stefanie J Dowideit; Jennifer L Edwards; Megan L Falsetta; Hsing-Ju Wu; Odile B Harrison; Kate L Fox; Kate L Seib; Tina L Maguire; Andrew H-J Wang; Martin C Maiden; Sean M Grimmond; Michael A Apicella; Michael P Jennings
Phasevarions mediate random switching of gene expression in pathogenic Neisseria.
PLoS pathogens 2009;5(4):e1000400.
2009: Chikako Ragan; Nicole Cloonan; Sean M Grimmond; Michael Zuker; Mark A Ragan
Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH.
PloS one 2009;4(5):e5745.
2009: Michael Imelfort; Jacqueline Batley; Sean M Grimmond; David Edwards
Genome sequencing approaches and successes.
Methods in molecular biology (Clifton, N.J.) 2009;513():345-58.
2008: Logan C Walker; Nic Waddell; Anette Ten Haaf; Sean M Grimmond; Amanda B Spurdle
Use of expression data and the CGEMS genome-wide breast cancer association study to identify genes that may modify risk in BRCA1/2 mutation carriers.
Breast cancer research and treatment 2008;112(2):229-36.
2008: Marcel Dinger; Paulo P Amaral; Tim R Mercer; Ken C Pang; Stephen J Bruce; brooke gardiner; Marjan E Askarian-Amiri; Kelin Ru; Giulia Soldà; Cas Simons; Susan M Sunkin; Mark L Crowe; Sean M Grimmond; Andrew C Perkins; John S Mattick
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.
Genome research 2008;18(9):1433-45.
2008: Nicole Cloonan; Alistair Forrest; Gabriel Kolle; brooke gardiner; Geoffrey J Faulkner; Mellissa K Brown; Darrin F Taylor; Anita L Steptoe; Shivangi Wani; Graeme Bethel; Alan J Robertson; Andrew C Perkins; Stephen J Bruce; Clarence C Lee; Swati S Ranade; Heather E Peckham; Jonathan M Manning; Kevin J McKernan; Sean M Grimmond
Stem cell transcriptome profiling via massive-scale mRNA sequencing.
Nature methods 2008;5(7):613-9.
2008: Nic Waddell; Anette Ten Haaf; Anna Marsh; Julie Johnson; Logan C Walker; Milena Gongora; Melissa Brown; Piyush Grover; Mark Girolami; Sean M Grimmond; Georgia Chenevix-Trench; Amanda B Spurdle
BRCA1 and BRCA2 missense variants of high and low clinical significance influence lymphoblastoid cell line post-irradiation gene expression.
PLoS genetics 2008;4(5):e1000080.
2008: Andrew P McMahon; Bruce Aronow; Duncan R Davidson; Jamie Andrew Davies; Kevin W Gaido; Sean M Grimmond; James L Lessard; Melissa H Little; steven potter; Elizabeth L Wilder; Pumin Zhang
GUDMAP: the genitourinary developmental molecular anatomy project.
Journal of the American Society of Nephrology : JASN 2008;19(4):667-71.
2008: Geoffrey J Faulkner; Alistair Forrest; Alistair Chalk; Kate Schroder; Yoshihide Hayashizaki; piero carninci; David A Hume; Sean M Grimmond
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
Genomics 2008;91(3):281-8.
2008: Nicole Cloonan; Sean M Grimmond
Transcriptome content and dynamics at single-nucleotide resolution.
Genome biology 2008;9(9):234.
2008: Nicole Cloonan; Mellissa K Brown; Anita L Steptoe; Shivangi Wani; Wei Ling Chan; Alistair Forrest; Gabriel Kolle; Brian Gabrielli; Sean M Grimmond
The miR-17-5p microRNA is a key regulator of the G1/S phase cell cycle transition.
Genome biology 2008;9(8):R127.
2007: M R Gardiner; M Milena Gongora; Sean M Grimmond; Andrew C Perkins
A global role for zebrafish klf4 in embryonic erythropoiesis.
Mechanisms of development 2007;124(9-10):762-74.
2007: Fiona Rae; Kyra Woods; Tedjo Sasmono; Naomi Campanale; Darrin Taylor; Dmitry A Ovchinnikov; Sean M Grimmond; David A Hume; Sharon D Ricardo; Melissa H Little
Characterisation and trophic functions of murine embryonic macrophages based upon the use of a Csf1r-EGFP transgene reporter.
Developmental biology 2007;308(1):232-46.
2007: Stephen J Bruce; brooke gardiner; Les J Burke; M Milena Gongora; Sean M Grimmond; Andrew C Perkins
Dynamic transcription programs during ES cell differentiation towards mesoderm in serum versus serum-freeBMP4 culture.
BMC genomics 2007;8():365.
2007: Andrew L Laslett; Sean M Grimmond; brooke gardiner; Lincon Stamp; Adelia Lin; Susan M Hawes; Sam Wormald; David J Nikolic-Paterson; David Haylock; Martin F Pera
Transcriptional analysis of early lineage commitment in human embryonic stem cells.
BMC developmental biology 2007;7():12.
2007: Kate L Seib; Hsing-Ju Wu; Yogitha N Srikhanta; Jennifer L Edwards; Megan L Falsetta; Amanda J Hamilton; Tina L Maguire; Sean M Grimmond; Michael A Apicella; Alastair G McEwan; Michael P Jennings
Characterization of the OxyR regulon of Neisseria gonorrhoeae.
Molecular microbiology 2007;63(1):54-68.
2006: Nic Waddell; Jyoti Jonnalagadda; Anna Marsh; Scott Grist; Mark Jenkins; Karen Hobson; Malcolm Taylor; Geoffrey J Lindeman; Sean V Tavtigian; Graeme Suthers; David E Goldgar; Peter J Oefner; Darrin Taylor; Sean M Grimmond; Kum Kum Khanna; Georgia Chenevix-Trench
Characterization of the breast cancer associated ATM 7271T>G (V2424G) mutation by gene expression profiling.
Genes, chromosomes & cancer 2006;45(12):1169-81.
2006: Georgina Caruana; Luise A Cullen-McEwen; Amy L Nelson; Xenia Kostoulias; Kyra Woods; brooke gardiner; Melissa J Davis; Darrin F Taylor; Rohan Teasdale; Sean M Grimmond; Melissa H Little; John F Bertram
Spatial gene expression in the T-stage mouse metanephros.
Gene expression patterns : GEP 2006;6(8):807-25.
2006: Paul A Dawson; brooke gardiner; Sean M Grimmond; Daniel Markovich
Transcriptional profile reveals altered hepatic lipid and cholesterol metabolism in hyposulfatemic NaS1 null mice.
Physiological genomics 2006;26(2):116-24.
2006: Gemma Martinez; Kylie Georgas; Grant A Challen; Bree Rumballe; Melissa J Davis; Darrin Taylor; Rohan Teasdale; Sean M Grimmond; Melissa H Little
Definition and spatial annotation of the dynamic secretome during early kidney development.
Developmental dynamics : an official publication of the American Association of Anatomists 2006;235(6):1709-19.
2006: Eleanor K L Mitchell; Darrin F Taylor; Kyra Woods; Melissa J Davis; Amy L Nelson; Rohan Teasdale; Sean M Grimmond; Melissa H Little; John F Bertram; Georgina Caruana
Differential gene expression in the developing mouse ureter.
Gene expression patterns : GEP 2006;6(5):519-38.
2006: Rajith N Aturaliya; J Lynn Fink; Melissa J Davis; Melvena S Teasdale; Kelly A Hanson; Kevin C Miranda; Alistair Forrest; Sean M Grimmond; Harukazu Suzuki; Mutsumi Kanamori; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Rohan Teasdale
Subcellular localization of mammalian type II membrane proteins.
Traffic (Copenhagen, Denmark) 2006;7(5):613-25.
2006: Denise Hodge; Elise Coghill; Janelle R Keys; Tina Maguire; Belinda Hartmann; Alasdair McDowall; Mitchell Weiss; Sean M Grimmond; Andrew Perkins
A global role for EKLF in definitive and primitive erythropoiesis.
Blood 2006;107(8):3359-70.
2006: Martin C Frith; Alistair Forrest; Ehsan Nourbakhsh; Ken C Pang; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Timothy Lawrence Bailey; Sean M Grimmond
The abundance of short proteins in the mammalian proteome.
PLoS genetics 2006;2(4):e52.
2006: Hsing-Ju Wu; Kate L Seib; Yogitha N Srikhanta; Stephen P Kidd; Jennifer L Edwards; Tina L Maguire; Sean M Grimmond; Michael A Apicella; Alastair G McEwan; Michael P Jennings
PerR controls Mn-dependent resistance to oxidative stress in Neisseria gonorrhoeae.
Molecular microbiology 2006;60(2):401-16.
2006: Christine A Wells; Alistair Chalk; Alistair Forrest; Darrin Taylor; Nic Waddell; Kate Schroder; S Roy Himes; Geoffrey J Faulkner; Sandra Lo; Takeya Kasukawa; Hideya Kawaji; Chikatoshi Kai; Jun Kawai; Shintaro Katayama; piero carninci; Yoshihide Hayashizaki; David A Hume; Sean M Grimmond
Alternate transcription of the Toll-like receptor signaling cascade.
Genome biology 2006;7(2):R10.
2006: Alistair Forrest; Darrin F Taylor; Mark L Crowe; Alistair Chalk; Nic J Waddell; Gabriel Kolle; Geoffrey J Faulkner; Rimantas Kodzius; Shintaro Katayama; Christine Wells; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Sean M Grimmond
Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases.
Genome biology 2006;7(1):R5.
2006: Alistair Forrest; Darrin F Taylor; J Lynn Fink; M Milena Gongora; Cameron Flegg; Rohan Teasdale; Harukazu Suzuki; Mutsumi Kanamori; Chikatoshi Kai; Yoshihide Hayashizaki; Sean M Grimmond
PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.
BMC bioinformatics 2006;7():82.
2006: Timothy Ravasi; Harukazu Suzuki; Ken C Pang; Shintaro Katayama; Masaaki Furuno; Rie Okunishi; Shiro Fukuda; Kelin Ru; Martin C Frith; M Milena Gongora; Sean M Grimmond; David A Hume; Yoshihide Hayashizaki; John S Mattick
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.
Genome research 2006;16(1):11-9.
2005: Edwina McGlinn; Kelly Lammerts van Bueren; Salvatore Fiorenza; Rong Mo; Alisa M Poh; Alistair Forrest; M Bento Soares; Maria de Fatima Bonaldo; Sean M Grimmond; Chi-Chung Hui; Brandon J Wainwright; Carol Wicking
Pax9 and Jagged1 act downstream of Gli3 in vertebrate limb development.
Mechanisms of development 2005;122(11):1218-33.
2005: Grant A Challen; brooke gardiner; Georgina Caruana; X Kostoulias; G Martinez; M Crowe; Darrin F Taylor; J Bertram; M Little; Sean M Grimmond
Temporal and spatial transcriptional programs in murine kidney development.
Physiological genomics 2005;23(2):159-71.
2005: Yogitha N Srikhanta; Tina L Maguire; Katryn J Stacey; Sean M Grimmond; Michael P Jennings
The phasevarion: a genetic system controlling coordinated, random switching of expression of multiple genes.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(15):5547-51.
2004: Nicholas E Timmins; Tina L Maguire; Sean M Grimmond; Lars Nielsen
Identification of three gene candidates for multicellular resistance in colon carcinoma.
Cytotechnology 2004;46(1):9-18.
2004: Grant A Challen; Gemma Martinez; Melissa J Davis; Darrin F Taylor; Mark Crowe; Rohan Teasdale; Sean M Grimmond; Melissa H Little
Identifying the molecular phenotype of renal progenitor cells.
Journal of the American Society of Nephrology : JASN 2004;15(9):2344-57.
2004: Fiona Rae; Gemma Martinez; Kevin Robert Gillinder; Aaron Smith; Gary Shooter; Alistair Forrest; Sean M Grimmond; Melissa H Little
Anlaysis of complementary expression profiles following WT1 induction versus repression reveals the cholesterol/fatty acid synthetic pathways as a possible major target of WT1.
Oncogene 2004;23(17):3067-79.
2003: Rita Sousa-Nunes; Amer Ahmed Rana; Ross Kettleborough; Joshua M Brickman; Melanie Clements; Alistair Forrest; Sean M Grimmond; Philip Avner; Jim Smith; Sally L Dunwoodie; Rosa S P Beddington
Characterizing embryonic gene expression patterns in the mouse using nonredundant sequence-based selection.
Genome research 2003;13(12):2609-20.
2003: Alistair Forrest; Timothy Ravasi; Darrin Taylor; Thomas Huber; David A Hume; Sean M Grimmond
Phosphoregulators: protein kinases and protein phosphatases of mouse.
Genome research 2003;13(6B):1443-54.
2003: Timothy Ravasi; Thomas Huber; Mihaela Zavolan; Alistair Forrest; Terry Gaasterland; Sean M Grimmond; David A Hume
Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome.
Genome research 2003;13(6B):1430-42.
2003: Stefano Gustincich; Serge Batalov; Kirk W Beisel; Hidemasa Bono; piero carninci; Colin F Fletcher; Sean M Grimmond; Nobutaka Hirokawa; Erich D Jarvis; Tim Jegla; Yuka Kawasawa; Julianna LeMieux; Harukata Miki; Elio Raviola; Rohan Teasdale; Naoko Tominaga; Ken Yagi; Andreas Zimmer; Yoshihide Hayashizaki; Yasushi Okazaki
Analysis of the mouse transcriptome for genes involved in the function of the nervous system.
Genome research 2003;13(6B):1395-401.
2003: Alistair Forrest; Darrin Taylor; Sean M Grimmond
Exploration of the cell-cycle genes found within the RIKEN FANTOM2 data set.
Genome research 2003;13(6B):1366-75.
2003: Sean M Grimmond; Kevin C Miranda; Zheng Yuan; Melissa J Davis; David A Hume; Ken Yagi; Naoko Tominaga; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Rohan Teasdale
The mouse secretome: functional classification of the proteins secreted into the extracellular environment.
Genome research 2003;13(6B):1350-9.
2003: Alexander Kanapin; Serge Batalov; Melissa J Davis; Julian Gough; Sean M Grimmond; Hideya Kawaji; Michele Magrane; Hideo Matsuda; Christian Schönbach; Rohan Teasdale; Zheng Yuan
Mouse proteome analysis.
Genome research 2003;13(6B):1335-44.
2003: Kevin J Ashton; Kirsty Holmgren; Jason N Peart; Amy R Lankford; G Paul Matherne; Sean M Grimmond; John P Headrick
Effects of A1 adenosine receptor overexpression on normoxic and post-ischemic gene expression.
Cardiovascular research 2003;57(3):715-26.
2002: Wendy J Ingram; Carol Wicking; Sean M Grimmond; Alistair Forrest; Brandon J Wainwright
Novel genes regulated by Sonic Hedgehog in pluripotent mesenchymal cells.
Oncogene 2002;21(53):8196-205.
2002: Timothy Ravasi; Christine Wells; Alistair Forrest; David M Underhill; Brandon J Wainwright; Alan Aderem; Sean M Grimmond; David A Hume
Generation of diversity in the innate immune system: macrophage heterogeneity arises from gene-autonomous transcriptional probability of individual inducible genes.
Journal of immunology (Baltimore, Md. : 1950) 2002;168(1):44-50.
2001: Sean M Grimmond; R Larder; Nick Van Hateren; Pam Siggers; S Morse; T Hacker; Ruth Arkell; Andy Greenfield
Expression of a novel mammalian epidermal growth factor-related gene during mouse neural development.
Mechanisms of development 2001;102(1-2):209-11.
2000: Sean M Grimmond; R Larder; Nick Van Hateren; Pam Siggers; T J Hulsebos; Ruth Arkell; Andy Greenfield
Cloning, mapping, and expression analysis of a gene encoding a novel mammalian EGF-related protein (SCUBE1).
Genomics 2000;70(1):74-81.
2000: Jodi Clyde-Smith; GU Silins; Michael Gartside; Sean M Grimmond; M Etheridge; A Apolloni; N Hayward; John F Hancock
Characterization of RasGRP2, a plasma membrane-targeted, dual specificity Ras/Rap exchange factor.
The Journal of biological chemistry 2000;275(41):32260-7.
2000: L Bergman; C Boothroyd; J Palmer; Sean M Grimmond; M Walters; Bin Tean Teh; J Shepherd; L Hartley; N Hayward
Identification of somatic mutations of the MEN1 gene in sporadic endocrine tumours.
British journal of cancer 2000;83(8):1003-8.
2000: Sean M Grimmond; Nick Van Hateren; Pam Siggers; Ruth Arkell; R Larder; MB Soares; M De Fatima Bonaldo; Lee Smith; Zuzanna Tymowska-Lalanne; C Wells; Andy Greenfield
Sexually dimorphic expression of protease nexin-1 and vanin-1 in the developing mouse gonad prior to overt differentiation suggests a role in mammalian sexual development.
Human molecular genetics 2000;9(10):1553-60.
2000: Daniela Bellomo; J P Headrick; GU Silins; C A Paterson; P S Thomas; Michael Gartside; Arne W Mould; Marian M Cahill; Ian D Tonks; Sean M Grimmond; S Townson; C Wells; M Little; Margaret C Cummings; Nicholas K Hayward; Graham F Kay
Mice lacking the vascular endothelial growth factor-B gene (Vegfb) have smaller hearts, dysfunctional coronary vasculature, and impaired recovery from cardiac ischemia.
Circulation research 2000;86(2):E29-35.
1999: Patrick Gaudray; Georges F Carle; D S Gerhard; M Gessler; marcel mannens; Maria Athanasiou; Jet Bliek; A Calender; L V Debelenko; M Devignes; Glen A Evans; R Favier; S Forbes; G Gaudray; B Gawin; M Gordon; Sean M Grimmond; Paul D Grossfeld; J Harris; M Hattori; F Hosoda; Holger Hummerich; M James; Jörg Kalla; Nicholas Katsanis
Report of the Sixth International Workshop on Human Chromosome 11 Mapping 1998. Nice, France, May 2-5, 1998.
Cytogenetics and cell genetics 1999;86(3-4):167-86.
1999: L Bergman; GU Silins; Sean M Grimmond; Holger Hummerich; C Stewart; P Little; N Hayward
A 500-kb sequence-ready cosmid contig and transcript map of the MEN1 region on 11q13.
Genomics 1999;55(1):49-56.
1998: C Stewart; F Parente; Fredrik Piehl; Filip Farnebo; Danielle Quincey; GU Silins; L Bergman; Georges F Carle; IH Lemmens; Sean M Grimmond; C Z Xian; S Khodei; Bin Tean Teh; J Lagercrantz; Pam Siggers; A Calender; V Van de Vem; Koen Kas; Günther Weber; N Hayward; Patrick Gaudray; Catharina Larsson
Characterization of the mouse Men1 gene and its expression during development.
Oncogene 1998;17(19):2485-93.
1998: S Mazeyrat; N Saut; Carole A Sargent; Sean M Grimmond; guy Longepied; IE Ehrmann; PS Ellis; Andy Greenfield; Nabeel A Affara; Michael John Mitchell
The mouse Y chromosome interval necessary for spermatogonial proliferation is gene dense with syntenic homology to the human AZFa region.
Human molecular genetics 1998;7(11):1713-24.
1998: Bin Tean Teh; Soili Kytölä; Filip Farnebo; L Bergman; FK Wong; Günther Weber; N Hayward; Catharina Larsson; B Skogseid; A Beckers; CM Phelan; M Edwards; M Epstein; F Alford; D Hurley; Sean M Grimmond; GU Silins; M Walters; C Stewart; JW Cardinal; S Khodaei; F Parente; L Tranebjaerg; R Jorde; Pasi Salmela
Mutation analysis of the MEN1 gene in multiple endocrine neoplasia type 1, familial acromegaly and familial isolated hyperparathyroidism.
The Journal of clinical endocrinology and metabolism 1998;83(8):2621-6.
1998: GU Silins; Sean M Grimmond; N Hayward
Characterisation of a new human and murine member of the DnaJ family of proteins.
Biochemical and biophysical research communications 1998;243(1):273-6.
1997: GU Silins; Sean M Grimmond; M Egerton; N Hayward
Analysis of the promoter region of the human VEGF-related factor gene.
Biochemical and biophysical research communications 1997;230(2):413-8.
1997: Günther Weber; Sean M Grimmond; J Lagercrantz; Eitan Friedman; CM Phelan; E Carson; N Hayward; O Jacobovitz; Magnus Nordenskjöld; Catharina Larsson
Exclusion of the phosphoinositide-specific phospholipase C beta 3 (PLCB3) gene as a candidate for multiple endocrine neoplasia type 1.
Human genetics 1997;99(1):130-2.
1996: Sean M Grimmond; J M Palmer; Marilyn K Walters; C Scott; Derek J Nancarrow; Bin Tean Teh; C Elmes; C Pyke; S K Khoo; I Bennett; N Wetzig; Nicholas K Hayward
Confirmation of susceptibility locus on chromosome 13 in Australian breast cancer families.
Human genetics 1996;98(1):80-5.
1996: S Townson; J Lagercrantz; Sean M Grimmond; GU Silins; Magnus Nordenskjöld; Günther Weber; N Hayward
Characterization of the murine VEGF-related factor gene.
Biochemical and biophysical research communications 1996;220(3):922-8.
1996: J Lagercrantz; Catharina Larsson; Sean M Grimmond; M Fredriksson; Günther Weber; Fredrik Piehl
Expression of the VEGF-related factor gene in pre- and postnatal mouse.
Biochemical and biophysical research communications 1996;220(1):147-52.
1996: Sean M Grimmond; J Lagercrantz; C Drinkwater; GU Silins; S Townson; Pam Pollock; D Gotley; E Carson; S Rakar; M Nordenskjöld; L Ward; N Hayward; Günther Weber
Cloning and characterization of a novel human gene related to vascular endothelial growth factor.
Genome research 1996;6(2):124-31.
1996: Sean M Grimmond; Bin Tean Teh; Su Ing Hii; J Cardinal; M Walters; M Epstein; M Edwards; A Hockey; P T Pullan; D Perry-Keene; Steven Boyages; D Cameron; Nicholas K Hayward
Predictive diagnosis of multiple endocrine neoplasia (MEN 1) in four Australian kindreds.
Australian and New Zealand journal of medicine 1996;26(1):27-32.
1995: Bin Tean Teh; Sean M Grimmond; J Shepherd; Catharina Larsson; N Hayward
Multiple endocrine neoplasia type I: clinical syndrome to molecular genetics.
The Australian and New Zealand journal of surgery 1995;65(10):708-13.
1995: J Lagercrantz; Catharina Larsson; Sean M Grimmond; Britt Skogseid; Anders Gobl; Eitan Friedman; E Carson; CM Phelan; K Oberg; Magnus Nordenskjöld
Candidate genes for multiple endocrine neoplasia type 1.
Journal of internal medicine 1995;238(3):245-8.
1995: Catharina Larsson; Alain Calender; Sean M Grimmond; Sophie Giraud; Nicholas K Hayward; Bin Tean Teh; Filip Farnebo
Molecular tools for presymptomatic testing in multiple endocrine neoplasia type 1.
Journal of internal medicine 1995;238(3):239-44.
1995: C V Boothroyd; Sean M Grimmond; DP Cameron; Nicholas K Hayward
G protein mutations in tumours of the pituitary, parathyroid and endocrine pancreas.
Biochemical and biophysical research communications 1995;211(3):1063-70.
1995: J Lagercrantz; E Carson; CM Phelan; Sean M Grimmond; A Rosén; E Daré; Magnus Nordenskjöld; Nicholas K Hayward; Catharina Larsson; Günther Weber
Genomic organization and complete cDNA sequence of the human phosphoinositide-specific phospholipase C beta 3 gene (PLCB3).
Genomics 1995;26(3):467-72.
1995: Sean M Grimmond; Günther Weber; Catharina Larsson; M Walters; Bin Tean Teh; J Shepherd; M Nordenskjold; N Hayward
Exclusion of the 13-kDa rapamycin binding protein gene (FKBP2) as a candidate gene for multiple endocrine neoplasia type 1.
Human genetics 1995;95(4):455-8.
1994: Bin Tean Teh; Su Ing Hii; R David; Venkat Parameswaran; Sean M Grimmond; Marilyn K Walters; T T Tan; Derek J Nancarrow; S P Chan; J Mennon
Multiple endocrine neoplasia type 1 (MEN1) in two Asian families.
Human genetics 1994;94(5):468-72.
1994: Günther Weber; Eitan Friedman; Sean M Grimmond; Nicholas K Hayward; CM Phelan; Britt Skogseid; Anders Gobl; Jan Zedenius; K Sandelin; Bin Tean Teh
The phospholipase C beta 3 gene located in the MEN1 region shows loss of expression in endocrine tumours.
Human molecular genetics 1994;3(10):1775-81.