Username

Password

Preview

Sign-in free and Explore the Exciting World of BiomedExperts:

Over 1.500.000 Profiles
More than 1.800 Organizations worldwide
State of the Art Network Visualizations

Manage your own Profile
Locate Experts in your Country/Region
Locate Experts in your 1. and 2. Level Network
Connect to Experts Worldwide

NetworkView

Nick Grishin

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Genes & Molecular Sequences

Concepts & Ideas

Procedures

Chemicals & Drugs

Sign-in to see full Profile

Sign-in to see all Coauthors

Publications

TOP 3
Sadreyev Ruslan I; Feramisco Jamison D; Tsao Hensin; Grishin Nick V
Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways.
Feramisco Jamison D; Sadreyev Ruslan I; Murray Mitzi L; Grishin Nick V; Tsao Hensin
Phenotypic and genotypic analyses of genetic skin disease through the Online Mendelian Inheritance in Man (OMIM) database.
Pei Jimin; Grishin Nick V
The Rho GTPase inactivation domain in Vibrio cholerae MARTX toxin has a circularly permuted papain-like thiol protease fold.

Sign-in to see all Publications

Sign in free and see...

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the visualized research activity
of experts around the globe

Sign-in to see more

Geonetwork of Nick Grishin (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

Sign-in to see more

All Publications

2009: Sadreyev Ruslan I; Feramisco Jamison D; Tsao Hensin; Grishin Nick V
Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways.
Bioinformatics (Oxford, England) 2009;25(22):2891-6.
2009: Feramisco Jamison D; Sadreyev Ruslan I; Murray Mitzi L; Grishin Nick V; Tsao Hensin
Phenotypic and genotypic analyses of genetic skin disease through the Online Mendelian Inheritance in Man (OMIM) database.
The Journal of investigative dermatology 2009;129(11):2628-36.
2009: Pei Jimin; Grishin Nick V
The Rho GTPase inactivation domain in Vibrio cholerae MARTX toxin has a circularly permuted papain-like thiol protease fold.
Proteins 2009;77(2):413-9.
2009: Salahudeen Ameen A; Thompson Joel W; Ruiz Julio C; Ma He-Wen; Kinch Lisa N; Li Qiming; Grishin Nick V; Bruick Richard K
An E3 ligase possessing an iron-responsive hemerythrin domain is a regulator of iron homeostasis.
Science (New York, N.Y.) 2009;326(5953):722-6.
2009: Liu Ying; Ye Xuecheng; Jiang Feng; Liang Chunyang; Chen Dongmei; Peng Junmin; Kinch Lisa N; Grishin Nick V; Liu Qinghua
C3PO, an endoribonuclease that promotes RNAi by facilitating RISC activation.
Science (New York, N.Y.) 2009;325(5941):750-3.
2009: Pei Jimin; Ma Cong; Rizo Josep; Grishin Nick V
Remote homology between Munc13 MUN domain and vesicle tethering complexes.
Journal of molecular biology 2009;391(3):509-17.
2009: Wang Yong; Sadreyev Ruslan I; Grishin Nick V
PROCAIN server for remote protein sequence similarity search.
Bioinformatics (Oxford, England) 2009;25(16):2076-7.
2009: Sadreyev Ruslan I; Tang Ming; Kim Bong-Hyun; Grishin Nick V
COMPASS server for homology detection: improved statistical accuracy, speed and functionality.
Nucleic acids research 2009;37(Web Server issue):W90-4.
2009: Shi Shuoyong; Chitturi Bhadrachalam; Grishin Nick V
ProSMoS server: a pattern-based search using interaction matrix representation of protein structures.
Nucleic acids research 2009;37(Web Server issue):W526-31.
2009: Kim Bong-Hyun; Cheng Hua; Grishin Nick V
HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic acids research 2009;37(Web Server issue):W532-8.
2009: Sadreyev Ruslan I; Kim Bong-Hyun; Grishin Nick V
Discrete-continuous duality of protein structure space.
Current opinion in structural biology 2009;19(3):321-8.
2009: Huerta Carlos; Borek Dominika; Machius Mischa; Grishin Nick V; Zhang Hong
Structure and mechanism of a eukaryotic FMN adenylyltransferase.
Journal of molecular biology 2009;389(2):388-400.
2009: Wang Yong; Sadreyev Ruslan I; Grishin Nick V
PROCAIN: protein profile comparison with assisting information.
Nucleic acids research 2009;37(11):3522-30.
2009: Sadreyev Ruslan I; Shi ShuoYong; Baker David; Grishin Nick V
Structure similarity measure with penalty for close non-equivalent residues.
Bioinformatics (Oxford, England) 2009;25(10):1259-63.
2009: Pei Jimin; Grishin Nick V
Prediction of a caspase-like fold in Tannerella forsythia virulence factor PrtH.
Cell cycle (Georgetown, Tex.) 2009;8(9):1453-5.
2009: Yin Wu; Romeo Stefano; Chang Shurong; Grishin Nick V; Hobbs Helen H; Cohen Jonathan C
Genetic variation in ANGPTL4 provides insights into protein processing and function.
The Journal of biological chemistry 2009;284(19):13213-22.
2009: Pei Jimin; Lupardus Patrick J; Garcia K Christopher; Grishin Nick V
CPDadh: a new peptidase family homologous to the cysteine protease domain in bacterial MARTX toxins.
Protein science : a publication of the Protein Society 2009;18(4):856-62.
2009: Zhang Junmei; Sprung Robert; Pei Jimin; Tan Xiaohong; Kim Sungchan; Zhu Heng; Liu Chuan-Fa; Grishin Nick V; Zhao Yingming
Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli.
Molecular & cellular proteomics : MCP 2009;8(2):215-25.
2009: Wang Yongyu; Kuan Phillip J; Xing Chao; Cronkhite Jennifer T; Torres Fernando; Rosenblatt Randall L; DiMaio J Michael; Kinch Lisa N; Grishin Nick V; Garcia Christine Kim
Genetic defects in surfactant protein A2 are associated with pulmonary fibrosis and lung cancer.
American journal of human genetics 2009;84(1):52-9.
2009: Yarbrough Melanie L; Li Yan; Kinch Lisa N; Grishin Nick V; Ball Haydn L; Orth Kim
AMPylation of Rho GTPases by Vibrio VopS disrupts effector binding and downstream signaling.
Science (New York, N.Y.) 2009;323(5911):269-72.
2009: Raman Srivatsan; Vernon Robert; Thompson James; Tyka Michael; Sadreyev Ruslan; Pei Jimin; Kim David; Kellogg Elizabeth; DiMaio Frank; Lange Oliver; Kinch Lisa; Sheffler Will; Kim Bong-Hyun; Das Rhiju; Grishin Nick V; Baker David
Structure prediction for CASP8 with all-atom refinement using Rosetta.
Proteins 2009;77 Suppl 9():89-99.
2009: Kinch Lisa N; Yarbrough Melanie L; Orth Kim; Grishin Nick V
Fido, a novel AMPylation domain common to fic, doc, and AvrB.
PloS one 2009;4(6):e5818.
2009: Majumdar Indraneel; Kinch Lisa N; Grishin Nick V
A database of domain definitions for proteins with complex interdomain geometry.
PloS one 2009;4(4):e5084.
2009: Kinch Lisa N; Grishin Nick V
The human Ago2 MC region does not contain an eIF4E-like mRNA cap binding motif.
Biology direct 2009;4():2.
2008: Pei Jimin; Tang Ming; Grishin Nick V
PROMALS3D web server for accurate multiple protein sequence and structure alignments.
Nucleic acids research 2008;36(Web Server issue):W30-4.
2008: Teichmann Sarah A; Grishin Nick V
Sequences and topology: from genome structure to protein structure.
Current opinion in structural biology 2008;18(3):340-1.
2008: Bolliger Marc F; Pei Jimin; Maxeiner Stephan; Boucard Antony A; Grishin Nick V; Südhof Thomas C
Unusually rapid evolution of Neuroligin-4 in mice.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(17):6421-6.
2008: Liu Yanjie; Tewari Rita; Ning Jue; Blagborough Andrew M; Garbom Sara; Pei Jimin; Grishin Nick V; Steele Robert E; Sinden Robert E; Snell William J; Billker Oliver
The conserved plant sterility gene HAP2 functions after attachment of fusogenic membranes in Chlamydomonas and Plasmodium gametes.
Genes & development 2008;22(8):1051-68.
2008: Wrabl James O; Grishin Nick V
Statistics of random protein superpositions: p-values for pairwise structure alignment.
Journal of computational biology : a journal of computational molecular cell biology 2008;15(3):317-55.
2008: Cheng Hua; Kim Bong-Hyun; Grishin Nick V
Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable data sets.
Journal of molecular biology 2008;377(4):1265-78.
2008: Pei Jimin; Kim Bong-Hyun; Grishin Nick V
PROMALS3D: a tool for multiple protein sequence and structure alignments.
Nucleic acids research 2008;36(7):2295-300.
2008: Sadreyev Ruslan I; Grishin Nick V
Accurate statistical model of comparison between multiple sequence alignments.
Nucleic acids research 2008;36(7):2240-8.
2008: Cheng Hua; Kim Bong-Hyun; Grishin Nick V
MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs.
Proteins 2008;70(4):1162-6.
2008: Huang Nian; Sorci Leonardo; Zhang Xuejun; Brautigam Chad A; Li Xiaoqing; Raffaelli Nadia; Magni Giulio; Grishin Nick V; Osterman Andrei L; Zhang Hong
Bifunctional NMN adenylyltransferase/ADP-ribose pyrophosphatase: structure and function in bacterial NAD metabolism.
Structure (London, England : 1993) 2008;16(2):196-209.
2008: Yang Jing; Brown Michael S; Liang Guosheng; Grishin Nick V; Goldstein Joseph L
Identification of the acyltransferase that octanoylates ghrelin, an appetite-stimulating peptide hormone.
Cell 2008;132(3):387-96.
2008: Nelson Erik D; Grishin Nick V
Folding domain B of protein A on a dynamically partitioned free energy landscape.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(5):1489-93.
2008: Infante Rodney E; Radhakrishnan Arun; Abi-Mosleh Lina; Kinch Lisa N; Wang Michael L; Grishin Nick V; Goldstein Joseph L; Brown Michael S
Purified NPC1 protein: II. Localization of sterol binding to a 240-amino acid soluble luminal loop.
The Journal of biological chemistry 2008;283(2):1064-75.
2008: Cheng Hua; Kim Bong-Hyun; Grishin Nick V
MALISAM: a database of structurally analogous motifs in proteins.
Nucleic acids research 2008;36(Database issue):D211-7.
2007: Szymanski Kimberly M; Binns Derk; Bartz René; Grishin Nick V; Li Wei-Ping; Agarwal Anil K; Garg Abhimanyu; Anderson Richard G W; Goodman Joel M
The lipodystrophy protein seipin is found at endoplasmic reticulum lipid droplet junctions and is important for droplet morphology.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(52):20890-5.
2007: Holladay Nathan B; Kinch Lisa N; Grishin Nick V
Optimization of linear disorder predictors yields tight association between crystallographic disorder and hydrophobicity.
Protein science : a publication of the Protein Society 2007;16(10):2140-52.
2007: Sadreyev Ruslan I; Tang Ming; Kim Bong-Hyun; Grishin Nick V
COMPASS server for remote homology inference.
Nucleic acids research 2007;35(Web Server issue):W653-8.
2007: Pei Jimin; Kim Bong-Hyun; Tang Ming; Grishin Nick V
PROMALS web server for accurate multiple protein sequence alignments.
Nucleic acids research 2007;35(Web Server issue):W649-52.
2007: Dikiy Alexander; Novoselov Sergey V; Fomenko Dmitri E; Sengupta Aniruddha; Carlson Bradley A; Cerny Ronald L; Ginalski Krzysztof; Grishin Nick V; Hatfield Dolph L; Gladyshev Vadim N
SelT, SelW, SelH, and Rdx12: genomics and molecular insights into the functions of selenoproteins of a novel thioredoxin-like family.
Biochemistry 2007;46(23):6871-82.
2007: Shi Shuoyong; Zhong Yi; Majumdar Indraneel; Sri Krishna S; Grishin Nick V
Searching for three-dimensional secondary structural patterns in proteins with ProSMoS.
Bioinformatics (Oxford, England) 2007;23(11):1331-8.
2007: Belogurov Georgiy A; Vassylyeva Marina N; Svetlov Vladimir; Klyuyev Sergiy; Grishin Nick V; Vassylyev Dmitry G; Artsimovitch Irina
Structural basis for converting a general transcription factor into an operon-specific virulence regulator.
Molecular cell 2007;26(1):117-29.
2007: Pei Jimin; Grishin Nick V
PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Bioinformatics (Oxford, England) 2007;23(7):802-8.
2007: Qi Yuan; Sadreyev Ruslan I; Wang Yong; Kim Bong-Hyun; Grishin Nick V
A comprehensive system for evaluation of remote sequence similarity detection.
BMC bioinformatics 2007;8():314.
2007: Knizewski Lukasz; Kinch Lisa N; Grishin Nick V; Rychlewski Leszek; Ginalski Krzysztof
Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches.
BMC structural biology 2007;7():40.
2006: Steczkiewicz Kamil; Kinch Lisa; Grishin Nick V; Rychlewski Leszek; Ginalski Krzysztof
Eukaryotic domain of unknown function DUF738 belongs to Gcn5-related N-acetyltransferase superfamily.
Cell cycle (Georgetown, Tex.) 2006;5(24):2927-30.
2006: Kinch Lisa N; Grishin Nick V
Longin-like folds identified in CHiPS and DUF254 proteins: vesicle trafficking complexes conserved in eukaryotic evolution.
Protein science : a publication of the Protein Society 2006;15(11):2669-74.
2006: Makarova Kira S; Grishin Nick V; Koonin Eugene V
The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria.
Bioinformatics (Oxford, England) 2006;22(21):2581-4.
2006: Kim Sung Chan; Sprung Robert; Chen Yue; Xu Yingda; Ball Haydn; Pei Jimin; Cheng Tzuling; Kho Yoonjung; Xiao Hao; Xiao Lin; Grishin Nick V; White Michael; Yang Xiang-Jiao; Zhao Yingming
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.
Molecular cell 2006;23(4):607-18.
2006: Cheek Sara; Krishna S Sri; Grishin Nick V
Structural classification of small, disulfide-rich protein domains.
Journal of molecular biology 2006;359(1):215-37.
2006: Nelson Erik D; Grishin Nick V
Alternate pathways for folding in the flavodoxin fold family revealed by a nucleation-growth model.
Journal of molecular biology 2006;358(3):646-53.
2006: Knizewski Lukasz; Kinch Lisa; Grishin Nick V; Rychlewski Leszek; Ginalski Krzysztof
Human herpesvirus 1 UL24 gene encodes a potential PD-(D/E)XK endonuclease.
Journal of virology 2006;80(5):2575-7.
2006: Nelson Erik D; Grishin Nick V
Scaling approach to the folding kinetics of large proteins.
Physical review. E, Statistical, nonlinear, and soft matter physics 2006;73(1 Pt 1):011904.
2006: Kinch Lisa N; Ginalski Krzysztof; Grishin Nick V
Site-2 protease regulated intramembrane proteolysis: sequence homologs suggest an ancient signaling cascade.
Protein science : a publication of the Protein Society 2006;15(1):84-93.
2006: Pei Jimin; Cai Wei; Kinch Lisa N; Grishin Nick V
Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Bioinformatics (Oxford, England) 2006;22(2):164-71.
2006: Saikatendu Kumar Singh; Zhang Xuejun; Kinch Lisa; Leybourne Matthew; Grishin Nick V; Zhang Hong
Structure of a conserved hypothetical protein SA1388 from S. aureus reveals a capped hexameric toroid with two PII domain lids and a dinuclear metal center.
BMC structural biology 2006;6():27.
2006: Pei Jimin; Grishin Nick V
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information.
Nucleic acids research 2006;34(16):4364-74.
2006: Krishna S Sri; Sadreyev Ruslan I; Grishin Nick V
A tale of two ferredoxins: sequence similarity and structural differences.
BMC structural biology 2006;6():8.
2006: Sadreyev Ruslan I; Grishin Nick V
Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds.
BMC structural biology 2006;6():6.
2006: Makarova Kira S; Grishin Nick V; Shabalina Svetlana A; Wolf Yuri I; Koonin Eugene V
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action.
Biology direct 2006;1():7.
2005: Basu Jayeeta; Shen Nan; Dulubova Irina; Lu Jun; Guan Rong; Guryev Oleg; Grishin Nick V; Rosenmund Christian; Rizo Josep
A minimal domain responsible for Munc13 activity.
Nature structural & molecular biology 2005;12(11):1017-8.
2005: Wrabl James O; Grishin Nick V
Grouping of amino acid types and extraction of amino acid properties from multiple sequence alignments using variance maximization.
Proteins 2005;61(3):523-34.
2005: Pei Jimin; Grishin Nick V
COG3926 and COG5526: a tale of two new lysozyme-like protein families.
Protein science : a publication of the Protein Society 2005;14(10):2574-81.
2005: Kim Bong-Hyun; Sadreyev Ruslan; Grishin Nick V
COG4849 is a novel family of nucleotidyltransferases.
Journal of molecular recognition : JMR 2005;18(5):422-5.
2005: Cheng Hua; Grishin Nick V
DOM-fold: a structure with crossing loops found in DmpA, ornithine acetyltransferase, and molybdenum cofactor-binding domain.
Protein science : a publication of the Protein Society 2005;14(7):1902-10.
2005: Pei Jimin; Grishin Nick V
The P5 protein from bacteriophage phi-6 is a distant homolog of lytic transglycosylases.
Protein science : a publication of the Protein Society 2005;14(5):1370-4.
2005: Zheng Mingzhu; Ginalski Krzysztof; Rychlewski Leszek; Grishin Nick V
Protein domain of unknown function DUF1023 is an alpha/beta hydrolase.
Proteins 2005;59(1):1-6.
2005: Krishna S Sri; Grishin Nick V
Structural drift: a possible path to protein fold change.
Bioinformatics (Oxford, England) 2005;21(8):1308-10.
2005: Araç Demet; Dulubova Irina; Pei Jimin; Huryeva Iryna; Grishin Nick V; Rizo Josep
Three-dimensional structure of the rSly1 N-terminal domain reveals a conformational change induced by binding to syntaxin 5.
Journal of molecular biology 2005;346(2):589-601.
2005: Kinch Lisa N; Cheek Sara; Grishin Nick V
EDD, a novel phosphotransferase domain common to mannose transporter EIIA, dihydroxyacetone kinase, and DegV.
Protein science : a publication of the Protein Society 2005;14(2):360-7.
2005: Qi Yuan; Grishin Nick V
Structural classification of thioredoxin-like fold proteins.
Proteins 2005;58(2):376-88.
2005: Majumdar Indraneel; Krishna S Sri; Grishin Nick V
PALSSE: a program to delineate linear secondary structural elements from protein structures.
BMC bioinformatics 2005;6():202.
2005: Kinch Lisa N; Ginalski Krzysztof; Rychlewski Leszek; Grishin Nick V
Identification of novel restriction endonuclease-like fold families among hypothetical proteins.
Nucleic acids research 2005;33(11):3598-605.
2005: Ginalski Krzysztof; Grishin Nick V; Godzik Adam; Rychlewski Leszek
Practical lessons from protein structure prediction.
Nucleic acids research 2005;33(6):1874-91.
2005: Cheek Sara; Ginalski Krzysztof; Zhang Hong; Grishin Nick V
A comprehensive update of the sequence and structure classification of kinases.
BMC structural biology 2005;5():6.
2004: Cheek Sara; Qi Yuan; Krishna S Sri; Kinch Lisa N; Grishin Nick V
4SCOPmap: automated assignment of protein structures to evolutionary superfamilies.
BMC bioinformatics 2004;5():197.
2004: Qi Yuan; Grishin Nick V
PCOAT: positional correlation analysis using multiple methods.
Bioinformatics (Oxford, England) 2004;20(18):3697-9.
2004: Nelson Erik D; Grishin Nick V
Efficient expansion, folding, and unfolding of proteins.
Physical review. E, Statistical, nonlinear, and soft matter physics 2004;70(5 Pt 1):051906.
2004: Rand Tim A; Ginalski Krzysztof; Grishin Nick V; Wang Xiaodong
Biochemical identification of Argonaute 2 as the sole protein required for RNA-induced silencing complex activity.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(40):14385-9.
2004: Ginalski Krzysztof; Zhang Hong; Grishin Nick V
Raptor protein contains a caspase-like domain.
Trends in biochemical sciences 2004;29(10):522-4.
2004: Cai Wei; Pei Jimin; Grishin Nick V
Reconstruction of ancestral protein sequences and its applications.
BMC evolutionary biology 2004;4():33.
2004: Pei Jimin; Grishin Nick V
Combining evolutionary and structural information for local protein structure prediction.
Proteins 2004;56(4):782-94.
2004: Sadreyev Ruslan I; Grishin Nick V
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments.
BMC bioinformatics 2004;5():106.
2004: Ginalski Krzysztof; Kinch Lisa; Rychlewski Leszek; Grishin Nick V
BTLCP proteins: a novel family of bacterial transglutaminase-like cysteine proteinases.
Trends in biochemical sciences 2004;29(8):392-5.
2004: Cheng Hua; Shen Nan; Pei Jimin; Grishin Nick V
Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease.
Protein science : a publication of the Protein Society 2004;13(8):2260-9.
2004: Krishna S Sri; Grishin Nick V
The finger domain of the human deubiquitinating enzyme HAUSP is a zinc ribbon.
Cell cycle (Georgetown, Tex.) 2004;3(8):1046-9.
2004: Shah Rahul; Coleman Catherine S; Mir Kiran; Baldwin Jeffrey; Van Etten James L; Grishin Nick V; Pegg Anthony E; Stanley Bruce A; Phillips Margaret A
Paramecium bursaria chlorella virus-1 encodes an unusual arginine decarboxylase that is a close homolog of eukaryotic ornithine decarboxylases.
The Journal of biological chemistry 2004;279(34):35760-7.
2004: Krishna S Sri; Grishin Nick V
Structurally analogous proteins do exist!
Structure (London, England : 1993) 2004;12(7):1125-7.
2004: Ginalski Krzysztof; Kinch Lisa; Rychlewski Leszek; Grishin Nick V
DCC proteins: a novel family of thiol-disulfide oxidoreductases.
Trends in biochemical sciences 2004;29(7):339-42.
2004: Ginalski Krzysztof; von Grotthuss Marcin; Grishin Nick V; Rychlewski Leszek
Detecting distant homology with Meta-BASIC.
Nucleic acids research 2004;32(Web Server issue):W576-81.
2004: Ginalski Krzysztof; Kinch Lisa; Rychlewski Leszek; Grishin Nick V
BOF: a novel family of bacterial OB-fold proteins.
FEBS letters 2004;567(2-3):297-301.
2004: Sadreyev Ruslan I; Grishin Nick V
Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs.
Bioinformatics (Oxford, England) 2004;20(6):818-28.
2004: Ginalski Krzysztof; Rychlewski Leszek; Baker David; Grishin Nick V
Protein structure prediction for the male-specific region of the human Y chromosome.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(8):2305-10.
2004: Liang Shide; Grishin Nick V
Effective scoring function for protein sequence design.
Proteins 2004;54(2):271-81.
2004: Wrabl James O; Grishin Nick V
Gaps in structurally similar proteins: towards improvement of multiple sequence alignment.
Proteins 2004;54(1):71-87.
2003: Sadreyev Ruslan I; Baker David; Grishin Nick V
Profile-profile comparisons by COMPASS predict intricate homologies between protein families.
Protein science : a publication of the Protein Society 2003;12(10):2262-72.
2003: Pei Jimin; Dokholyan Nikolay V; Shakhnovich Eugene I; Grishin Nick V
Using protein design for homology detection and active site searches.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(20):11361-6.
2003: Mittelman David; Sadreyev Ruslan; Grishin Nick
Probabilistic scoring measures for profile-profile comparison yield more accurate short seed alignments.
Bioinformatics (Oxford, England) 2003;19(12):1531-9.
2003: Kinch Lisa N; Baker David; Grishin Nick V
Deciphering a novel thioredoxin-like fold family.
Proteins 2003;52(3):323-31.
2003: Pei Jimin; Grishin Nick V
Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases.
Protein science : a publication of the Protein Society 2003;12(5):1131-5.
2003: Zhang Xuejun; Kurnasov Oleg V; Karthikeyan Subramanian; Grishin Nick V; Osterman Andrei L; Zhang Hong
Structural characterization of a human cytosolic NMN/NaMN adenylyltransferase and implication in human NAD biosynthesis.
The Journal of biological chemistry 2003;278(15):13503-11.
2003: Karthikeyan Subramanian; Zhou Qingxian; Mseeh Faika; Grishin Nick V; Osterman Andrei L; Zhang Hong
Crystal structure of human riboflavin kinase reveals a beta barrel fold and a novel active site arch.
Structure (London, England : 1993) 2003;11(3):265-73.
2003: Pei Jimin; Sadreyev Ruslan; Grishin Nick V
PCMA: fast and accurate multiple sequence alignment based on profile consistency.
Bioinformatics (Oxford, England) 2003;19(3):427-8.
2003: Sadreyev Ruslan; Grishin Nick
COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance.
Journal of molecular biology 2003;326(1):317-36.
2003: Krishna S Sri; Majumdar Indraneel; Grishin Nick V
Structural classification of zinc fingers: survey and summary.
Nucleic acids research 2003;31(2):532-50.
2003: Kinch Lisa N; Wrabl James O; Krishna S Sri; Majumdar Indraneel; Sadreyev Ruslan I; Qi Yuan; Pei Jimin; Cheng Hua; Grishin Nick V
CASP5 assessment of fold recognition target predictions.
Proteins 2003;53 Suppl 6():395-409.
2003: Kinch Lisa N; Qi Yuan; Hubbard Tim J P; Grishin Nick V
CASP5 target classification.
Proteins 2003;53 Suppl 6():340-51.
2002: Grishin Vyacheslav N; Grishin Nick V
Euclidian space and grouping of biological objects.
Bioinformatics (Oxford, England) 2002;18(11):1523-34.
2002: Wolf Yuri I; Rogozin Igor B; Grishin Nick V; Koonin Eugene V
Genome trees and the tree of life.
Trends in genetics : TIG 2002;18(9):472-9.
2002: Singh S Kumar; Kurnasov Oleg V; Chen Baozhi; Robinson Howard; Grishin Nick V; Osterman Andrei L; Zhang Hong
Crystal structure of Haemophilus influenzae NadR protein. A bifunctional enzyme endowed with NMN adenyltransferase and ribosylnicotinimide kinase activities.
The Journal of biological chemistry 2002;277(36):33291-9.
2002: Cheek Sara; Zhang Hong; Grishin Nick V
Sequence and structure classification of kinases.
Journal of molecular biology 2002;320(4):855-81.
2002: Kinch Lisa N; Grishin Nick V
Expanding the nitrogen regulatory protein superfamily: Homology detection at below random sequence identity.
Proteins 2002;48(1):75-84.
2002: Kinch Lisa N; Grishin Nick V
Evolution of protein structures and functions.
Current opinion in structural biology 2002;12(3):400-8.
2002: Qi Yuan; Pei Jimin; Grishin Nick V
C-terminal domain of gyrase A is predicted to have a beta-propeller structure.
Proteins 2002;47(3):258-64.
2002: Kinch Lisa N; Saier Milton H; Grishin Nick V
Sec61beta--a component of the archaeal protein secretory system.
Trends in biochemical sciences 2002;27(4):170-1.
2002: Zhou Tianjun; Kurnasov Oleg; Tomchick Diana R; Binns Derk D; Grishin Nick V; Marquez Victor E; Osterman Andrei L; Zhang Hong
Structure of human nicotinamide/nicotinic acid mononucleotide adenylyltransferase. Basis for the dual substrate specificity and activation of the oncolytic agent tiazofurin.
The Journal of biological chemistry 2002;277(15):13148-54.
2002: Pei Jimin; Grishin Nick V
Breaking the singleton of germination protease.
Protein science : a publication of the Protein Society 2002;11(3):691-7.
2002: Sierra David A; Gilbert Debra J; Householder Deborah; Grishin Nick V; Yu Kan; Ukidwe Pallavi; Barker Sheryll A; He Wei; Wensel Theodore G; Otero Glen; Brown Greg; Copeland Neal G; Jenkins Nancy A; Wilkie Thomas M
Evolution of the regulators of G-protein signaling multigene family in mouse and human.
Genomics 2002;79(2):177-85.
2002: Liang Shide; Grishin Nick V
Side-chain modeling with an optimized scoring function.
Protein science : a publication of the Protein Society 2002;11(2):322-31.
2002: Zhang Hong; Zhou Tianjun; Kurnasov Oleg; Cheek Sara; Grishin Nick V; Osterman Andrei
Crystal structures of E. coli nicotinate mononucleotide adenylyltransferase and its complex with deamido-NAD.
Structure (London, England : 1993) 2002;10(1):69-79.
2002: Makarova Kira S; Aravind L; Grishin Nick V; Rogozin Igor B; Koonin Eugene V
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
Nucleic acids research 2002;30(2):482-96.
2001: Wrabl J O; Grishin N V
Homology between O-linked GlcNAc transferases and proteins of the glycogen phosphorylase superfamily.
Journal of molecular biology 2001;314(3):365-74.
2001: Abbott J J; Pei J; Ford J L; Qi Y; Grishin V N; Pitcher L A; Phillips M A; Grishin N V
Structure prediction and active site analysis of the metal binding determinants in gamma -glutamylcysteine synthetase.
The Journal of biological chemistry 2001;276(45):42099-107.
2001: Wolf Y I; Rogozin I B; Grishin N V; Tatusov R L; Koonin E V
Genome trees constructed using five different approaches suggest new major bacterial clades.
BMC evolutionary biology 2001;1():8.
2001: Pei J; Grishin N V
AL2CO: calculation of positional conservation in a protein sequence alignment.
Bioinformatics (Oxford, England) 2001;17(8):700-12.
2001: Pei J; Grishin N V
Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases.
Trends in biochemical sciences 2001;26(5):275-7.
2001: Grishin N V
Treble clef finger--a functionally diverse zinc-binding structural motif.
Nucleic acids research 2001;29(8):1703-14.
2001: Grishin N V
Mh1 domain of Smad is a degraded homing endonuclease.
Journal of molecular biology 2001;307(1):31-7.
2001: Grishin N V
KH domain: one motif, two folds.
Nucleic acids research 2001;29(3):638-43.
2001: Horvath M M; Grishin N V
The C-terminal domain of HPII catalase is a member of the type I glutamine amidotransferase superfamily.
Proteins 2001;42(2):230-6.
2001: Pei J; Grishin N V
GGDEF domain is homologous to adenylyl cyclase.
Proteins 2001;42(2):210-6.
2000: Zhou T; Daugherty M; Grishin N V; Osterman A L; Zhang H
Structure and mechanism of homoserine kinase: prototype for the GHMP kinase superfamily.
Structure (London, England : 1993) 2000;8(12):1247-57.
2000: Galperin M Y; Grishin N V
The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase.
Proteins 2000;41(2):238-47.
2000: Shao X; Grishin N V
Common fold in helix-hairpin-helix proteins.
Nucleic acids research 2000;28(14):2643-50.
2000: Grishin N V; Wolf Y I; Koonin E V
From complete genomes to measures of substitution rate variability within and between proteins.
Genome research 2000;10(7):991-1000.
2000: Grishin N V
C-terminal domains of Escherichia coli topoisomerase I belong to the zinc-ribbon superfamily.
Journal of molecular biology 2000;299(5):1165-77.
2000: Grishin N V
Two tricks in one bundle: helix-turn-helix gains enzymatic activity.
Nucleic acids research 2000;28(11):2229-33.
2000: Wolf Y I; Grishin N V; Koonin E V
Estimating the number of protein folds and families from complete genome data.
Journal of molecular biology 2000;299(4):897-905.
2000: Ye J; Davé U P; Grishin N V; Goldstein J L; Brown M S
Asparagine-proline sequence within membrane-spanning segment of SREBP triggers intramembrane cleavage by site-2 protease.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(10):5123-8.
2000: Leipe D D; Aravind L; Grishin N V; Koonin E V
The bacterial replicative helicase DnaB evolved from a RecA duplication.
Genome research 2000;10(1):5-16.
1999: Makarova K S; Grishin N V
Thermolysin and mitochondrial processing peptidase: how far structure-functional convergence goes.
Protein science : a publication of the Protein Society 1999;8(11):2537-40.
1999: Grishin N V; Osterman A L; Brooks H B; Phillips M A; Goldsmith E J
X-ray structure of ornithine decarboxylase from Trypanosoma brucei: the native structure and the structure in complex with alpha-difluoromethylornithine.
Biochemistry 1999;38(46):15174-84.
1999: Makarova K S; Grishin N V
The Zn-peptidase superfamily: functional convergence after evolutionary divergence.
Journal of molecular biology 1999;292(1):11-7.
1999: Wolf Y I; Aravind L; Grishin N V; Koonin E V
Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.
Genome research 1999;9(8):689-710.
1999: Grishin N V
Phosphatidylinositol phosphate kinase: a link between protein kinase and glutathione synthase folds.
Journal of molecular biology 1999;291(2):239-47.
1999: Makarova K S; Aravind L; Galperin M Y; Grishin N V; Tatusov R L; Wolf Y I; Koonin E V
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.
Genome research 1999;9(7):608-28.
1999: Grishin N V
A novel approach to phylogeny reconstruction from protein sequences.
Journal of molecular evolution 1999;48(3):264-73.
1998: Grishin N V
The R3H motif: a domain that binds single-stranded nucleic acids.
Trends in biochemical sciences 1998;23(9):329-30.
1997: Grishin N V
Estimation of evolutionary distances from protein spatial structures.
Journal of molecular evolution 1997;45(4):359-69.
1996: Grishin N V; Osterman A L; Goldsmith E J; Phillips M A
Crystallization and preliminary X-ray studies of ornithine decarboxylase from Trypanosoma brucei.
Proteins 1996;24(2):272-3.
1995: Grishin N V; Phillips M A; Goldsmith E J
Modeling of the spatial structure of eukaryotic ornithine decarboxylases.
Protein science : a publication of the Protein Society 1995;4(7):1291-304.
1995: Osterman A L; Kinch L N; Grishin N V; Phillips M A
Acidic residues important for substrate binding and cofactor reactivity in eukaryotic ornithine decarboxylase identified by alanine scanning mutagenesis.
The Journal of biological chemistry 1995;270(20):11797-802.
1994: Grishin N V; Phillips M A
The subunit interfaces of oligomeric enzymes are conserved to a similar extent to the overall protein sequences.
Protein science : a publication of the Protein Society 1994;3(12):2455-8.
1994: Osterman A; Grishin N V; Kinch L N; Phillips M A
Formation of functional cross-species heterodimers of ornithine decarboxylase.
Biochemistry 1994;33(46):13662-7.
1992: Osterman A L; Grishin N V; Smulevitch S V; Matz M V; Zagnitko O P; Revina L P; Stepanov V M
Primary structure of carboxypeptidase T: delineation of functionally relevant features in Zn-carboxypeptidase family.
Journal of protein chemistry 1992;11(5):561-70.
1992: Teplyakov A; Polyakov K; Obmolova G; Strokopytov B; Kuranova I; Osterman A; Grishin N; Smulevitch S; Zagnitko O; Galperina O
Crystal structure of carboxypeptidase T from Thermoactinomyces vulgaris.
European journal of biochemistry / FEBS 1992;208(2):281-8.
1991: Smulevitch S V; Osterman A L; Galperina O V; Matz M V; Zagnitko O P; Kadyrov R M; Tsaplina I A; Grishin N V; Chestukhina G G; Stepanov V M
Molecular cloning and primary structure of Thermoactinomyces vulgaris carboxypeptidase T. A metalloenzyme endowed with dual substrate specificity.
FEBS letters 1991;291(1):75-8.

Sign-in to see more

Sign-in free and Explore the Exciting World of BiomedExperts:

NetworkView

Nick Grishin

Research Profile (preview)

Genes & Molecular Sequences

Concepts & Ideas

Procedures

Chemicals & Drugs

Physiology

Phenomena

Occupations

Activities & Behaviors

Network (preview)

Publications

Sign in free and see...

Visualized networks:

GeoTargeted Searches:

Research Profiles:

Geonetwork of Nick Grishin (preview)

All Publications