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Kristina Gruden

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Oligonucleotide Array Sequence Analysis

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TOP 3
Dany Morisset; Dejan Stebih; Kristina Gruden; Mojca Milavec; Jana Zel
Quantitative analysis of food and feed samples with droplet digital PCR.
Irma Virant-Klun; Andrej Vogler; Thomas Skutella; Branko Cvjeticanin; Kristina Gruden; Matjaz Hren; Jasna Sinkovec
Isolation of small SSEA-4-positive putative stem cells from the ovarian surface epithelium of adult human ovaries by two different methods.
Nataša Mehle; Petra Nikolić; Maja Ravnikar; Kristina Gruden; Marina Dermastia
Real-time PCR for specific detection of three phytoplasmas from the apple proliferation group.

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All Publications

2013: Dany Morisset; Dejan Stebih; Kristina Gruden; Mojca Milavec; Jana Zel
Quantitative analysis of food and feed samples with droplet digital PCR.
PloS one 2013;8(5):e62583.
2013: Irma Virant-Klun; Andrej Vogler; Thomas Skutella; Branko Cvjeticanin; Kristina Gruden; Matjaz Hren; Jasna Sinkovec
Isolation of small SSEA-4-positive putative stem cells from the ovarian surface epithelium of adult human ovaries by two different methods.
BioMed research international 2013;2013():690415.
2013: Nataša Mehle; Petra Nikolić; Maja Ravnikar; Kristina Gruden; Marina Dermastia
Real-time PCR for specific detection of three phytoplasmas from the apple proliferation group.
Methods in molecular biology (Clifton, N.J.) 2013;938():269-81.
2013: Nataša Mehle; Nina Prezelj; Maja Ravnikar; Jana Boben; Kristina Gruden; Matjaž Hren; Marina Dermastia
A real-time PCR detection system for the bois noir and flavescence dorée phytoplasmas and quantification of the target DNA.
Methods in molecular biology (Clifton, N.J.) 2013;938():253-68.
2012: Jeroen P van Dijk; Steve J Wilkockson; Ming Zhu; Henriek G Beenen; Katarina Cankar; Howard V Davies; Kristina Gruden; Peter J M Hendriksen; Carlo Leifert; Stanley Scheffer; Louise V T Shepherd; Derek Stewart; Esther J Kok
The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers.
Journal of agricultural and food chemistry 2012;60(9):2090-101.
2012: Marko Petek; Tatjana Popovič; Nina Slapar; Neža Turnšek; Borut Strukelj; Borut Štrukelj; Meti Buh Gašparič; Kristina Gruden; Kristina Gruden; Maruša Pompe Novak; Maarten A Jongsma
A complex of genes involved in adaptation of Leptinotarsa decemlineata larvae to induced potato defense.
Archives of insect biochemistry and physiology 2012;79(3):153-81.
2012: Dragana Miljkovic; Igor Mozetič; Marko Petek; Vid Podpečan; Tjaša Stare; Kamil Witek; Marina Dermastia; Nada Lavrač; Kristina Gruden
Signalling network construction for modelling plant defence response.
PloS one 2012;7(12):e51822.
2012: Helena Motaln; Monika Primon; Ana Rotter; Christian Schichor; Kristina Gruden; Matjaz Hren; Tamara T Lah
Human mesenchymal stem cells exploit the immune response mediating chemokines to impact the phenotype of glioblastoma.
Cell transplantation 2012;21(7):1529-45.
2012: Gabriella Ujhelyi; Marleen M Voorhuijzen; Jeroen P van Dijk; A M Angeline Van Hoef; Henriek G Beenen; Kristina Gruden; Dany Morisset; Theo W Prins; Esther J Kok
Comparison and transfer testing of multiplex ligation detection methods for GM plants.
BMC biotechnology 2012;12():4.
2012: Kristina Gruden; Ana Herman; Matjaž Hren; Alojz Ihan; Tanja Albrecht; Chris Bauer; Andrej Blejec; Miomir Knežević; Andreja Kopitar; Michal Or-Guil; Maja Ravnikar; Primož Rožman; Johannes Schuchardt; Joachim Selbig; Borut Stabuc; Urban Svajger; Klemen Zupančič; Matjaz Jeras
A "crossomics" study analysing variability of different components in peripheral blood of healthy caucasoid individuals.
PloS one 2012;7(1):e28761.
2011: Vid Podpečan; Hannu Toivonen; Igor Trajkovski; Kimmo Kulovesi; Laura Langohr; Nada Lavrač; Helena Motaln; Igor Mozetič; Petra Kralj Novak; Marko Petek; Kristina Gruden
SegMine workflows for semantic microarray data analysis in Orange4WS.
BMC bioinformatics 2011;12():416.
2010: Urška Cepin; Ion Gutiérrez-Aguirre; Leonida Balažic; Maruša Pompe-Novak; Kristina Gruden; Maja Ravnikar
A one-step reverse transcription real-time PCR assay for the detection and quantitation of Grapevine fanleaf virus.
Journal of virological methods 2010;170(1-2):47-56.
2010: Petra Nikolić; Natasa Mehle; Kristina Gruden; Maja Ravnikar; Marina Dermastia
A panel of real-time PCR assays for specific detection of three phytoplasmas from the apple proliferation group.
Molecular and cellular probes 2010;24(5):303-9.
2010: Ana Rotter; Petra Kralj Novak; Špela Baebler; Natasa Toplak; Andrej Blejec; Nada Lavrac; Kristina Gruden
Gene expression data analysis using closed item set mining for labeled data.
Omics : a journal of integrative biology 2010;14(2):177-86.
2010: Meti Buh Gasparic; Torstein Tengs; Jose Luis La Paz; Arne Holst-Jensen; Maria Pla; Teresa Esteve; Jana Zel; Kristina Gruden
Comparison of nine different real-time PCR chemistries for qualitative and quantitative applications in GMO detection.
Analytical and bioanalytical chemistry 2010;396(6):2023-9.
2010: Nina Papazova; David Zhang; Kristina Gruden; Jana Vojvoda; Litao Yang; Meti Buh Gasparic; Andrej Blejec; Stephane Fouilloux; Marc De Loose; Isabel Taverniers
Evaluation of the reliability of maize reference assays for GMO quantification.
Analytical and bioanalytical chemistry 2010;396(6):2189-201.
2010: David Dobnik; Dany Morisset; Kristina Gruden
NAIMA as a solution for future GMO diagnostics challenges.
Analytical and bioanalytical chemistry 2010;396(6):2229-33.
2010: Marko Petek; Špela Baebler; Drago Kuzman; Ana Rotter; Zdravko Podlesek; Kristina Gruden; Maja Ravnikar; Uros Urleb
Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome: modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation.
BMC microbiology 2010;10():159.
2009: Ion Gutiérrez-Aguirre; Natasa Mehle; Duska Delić; Kristina Gruden; Rick Mumford; Maja Ravnikar
Real-time quantitative PCR based sensitive detection and genotype discrimination of Pepino mosaic virus.
Journal of virological methods 2009;162(1-2):46-55.
2009: Petra Krau Novak; Kristina Gruden; Dany Morisset; Nada Lavrac; Dejan Stebih; Ana Rotter; Jana Zel
GMOtrack: generator of cost-effective GMO testing strategies.
Journal of AOAC International 2009;92(6):1739-46.
2009: Dany Morisset; Tina Demsar; Kristina Gruden; Jana Vojvoda; Dejan Stebih; Jana Zel
Detection of genetically modified organisms--closing the gaps.
Nature biotechnology 2009;27(8):700-1.
2009: Špela Baebler; Hana Krecic-Stres; Ana Rotter; Polona Kogovsek; Katarina Cankar; Esther J Kok; Kristina Gruden; Maja Kovac; Jana Zel; Marusa Pompe-Novak; Maja Ravnikar
PVY(NTN) elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation.
Molecular plant pathology 2009;10(2):263-75.
2009: Nada Lavrac; Petra Kralj Novak; Igor Mozetic; Vid Podpecan; Helena Motaln; Marko Petek; Kristina Gruden
Semantic subgroup discovery: using ontologies in microarray data analysis.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2009;2009():5613-6.
2009: Matjaz Hren; Petra Nikolić; Ana Rotter; Andrej Blejec; Nancy Terrier; Maja Ravnikar; Marina Dermastia; Kristina Gruden
'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine.
BMC genomics 2009;10():460.
2009: Ana Rotter; Céline Camps; Marc Lohse; Christian Kappel; Stefania Pilati; Matjaz Hren; Mark Stitt; Pierre Coutos-Thévenot; Claudio Moser; Björn Usadel; Serge Delrot; Kristina Gruden
Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine.
BMC plant biology 2009;9():104.
2008: Dany Morisset; David Dobnik; Sandrine Hamels; Jana Zel; Kristina Gruden
NAIMA: target amplification strategy allowing quantitative on-chip detection of GMOs.
Nucleic acids research 2008;36(18):e118.
2008: Ana Rotter; Matjaz Hren; Špela Baebler; Andrej Blejec; Kristina Gruden
Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing.
Omics : a journal of integrative biology 2008;12(3):171-82.
2008: Katarina Cankar; Valérie Chauvensy-Ancel; Marie-Noelle Fortabat; Kristina Gruden; André Kobilinsky; Jana Zel; Yves A. Bertheau
Detection of nonauthorized genetically modified organisms using differential quantitative polymerase chain reaction: application to 35S in maize.
Analytical biochemistry 2008;376(2):189-99.
2008: P Kogovsek; L Gow; M Pompe-Novak; Kristina Gruden; G D Foster; N Boonham; M Ravnikar
Single-step RT real-time PCR for sensitive detection and discrimination of Potato virus Y isolates.
Journal of virological methods 2008;149(1):1-11.
2007: Jana Zel; Kristina Gruden; Katarina Cankar; Dejan Stebih; Andrej Blejec
Calculation of measurement uncertainty in quantitative analysis of genetically modified organisms using intermediate precision--a practical approach.
Journal of AOAC International 2007;90(2):582-6.
2007: Ana Rotter; Björn Usadel; Špela Baebler; Mark Stitt; Kristina Gruden
Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species.
Plant methods 2007;3():10.
2006: Jerica Sabotic; Dominik Gaser; Boris Rogelj; Kristina Gruden; Borut Strukelj; Joze Brzin
Heterogeneity in the cysteine protease inhibitor clitocypin gene family.
Biological chemistry 2006;387(12):1559-66.
2006: Katarina Cankar; Dejan Stebih; Tanja Dreo; Jana Zel; Kristina Gruden
Critical points of DNA quantification by real-time PCR--effects of DNA extraction method and sample matrix on quantification of genetically modified organisms.
BMC biotechnology 2006;6():37.
2005: Katarina Cankar; Maja Ravnikar; Jana Zel; Kristina Gruden; Natasa Toplak
Real-time polymerase chain reaction detection of cauliflower mosaic virus to complement the 35S screening assay for genetically modified organisms.
Journal of AOAC International 2005;88(3):814-22.
2004: Kristina Gruden; Anja G J Kuipers; Gregor Guncar; Nina Slapar; Borut Strukelj; Maarten Jongsma
Molecular basis of Colorado potato beetle adaptation to potato plant defence at the level of digestive cysteine proteinases.
Insect biochemistry and molecular biology 2004;34(4):365-75.
2003: Kristina Gruden; Tatjana Popovic; Nina Cimerman; Igor Krizaj; Borut Strukelj
Diverse enzymatic specificities of digestive proteases, 'intestains', enable Colorado potato beetle larvae to counteract the potato defence mechanism.
Biological chemistry 2003;384(2):305-10.
2001: A Francky; B M Francky; Borut Strukelj; Kristina Gruden; A Ritonja; Igor Krizaj; I Kregar; Roger H Pain; Joze Pungercar
A basic residue at position 36p of the propeptide is not essential for the correct folding and subsequent autocatalytic activation of prochymosin.
European journal of biochemistry / FEBS 2001;268(8):2362-8.
2000: Borut Strukelj; Brigita Lenarcic; Kristina Gruden; Joze Pungercar; Boris Rogelj; Vito Turk; Dirk Bosch; Maarten Jongsma
Equistatin, a protease inhibitor from the sea anemone actinia equina, is composed of three structural and functional domains.
Biochemical and biophysical research communications 2000;269(3):732-6.
1998: Kristina Gruden; Borut Strukelj; Tatjana Popovic; Brigita Lenarcic; Tadeja Bevec; Joze Brzin; I Kregar; J Herzog-Velikonja; Willem J Stiekema; Dirk Bosch; Maarten Jongsma
The cysteine protease activity of Colorado potato beetle (Leptinotarsa decemlineata Say) guts, which is insensitive to potato protease inhibitors, is inhibited by thyroglobulin type-1 domain inhibitors.
Insect biochemistry and molecular biology 1998;28(8):549-60.
1997: Kristina Gruden; Borut Strukelj; Maja Ravnikar; Mateja Poljsak-Prijatelj; I Mavric; Joze Brzin; Joze Pungercar; I Kregar
Potato cysteine proteinase inhibitor gene family: molecular cloning, characterisation and immunocytochemical localisation studies.
Plant molecular biology 1997;34(2):317-23.