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Debraj GuhaThakurta

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Oligonucleotide Array Sequence Analysis

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Wan-Lin Su; Barmak Modrek; Debraj GuhaThakurta; Stephen Wilton Edwards; Jyoti K Shah; Amit V Kulkarni; Archie Russell; Eric E Schadt; Jason M Johnson; John C Castle
Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences.
Debraj GuhaThakurta; Tao Xie; Manish Anand; Stephen Wilton Edwards; Guoya Li; Susanna S Wang; Eric E Schadt
Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.
Debraj GuhaThakurta
Computational identification of transcriptional regulatory elements in DNA sequence.

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2008: Wan-Lin Su; Barmak Modrek; Debraj GuhaThakurta; Stephen Wilton Edwards; Jyoti K Shah; Amit V Kulkarni; Archie Russell; Eric E Schadt; Jason M Johnson; John C Castle
Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences.
BMC genomics 2008;9():273.
2006: Debraj GuhaThakurta; Tao Xie; Manish Anand; Stephen Wilton Edwards; Guoya Li; Susanna S Wang; Eric E Schadt
Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.
BMC genomics 2006;7():235.
2006: Debraj GuhaThakurta
Computational identification of transcriptional regulatory elements in DNA sequence.
Nucleic acids research 2006;34(12):3585-98.
2005: Eric E Schadt; john lamb; Xia Yang; Jun Zhu; Stephen Wilton Edwards; Debraj GuhaThakurta; Solveig K Sieberts; Stephanie Monks; Marc Reitman; Chunsheng Zhang; Pek Yee Lum; Amy Leonardson; Rolf Thieringer; Joseph M Metzger; Liming Yang; John Castle; Haoyuan Zhu; Shera F Kash; Thomas A Drake; Alan Sachs; Aldons J Lusis
An integrative genomics approach to infer causal associations between gene expression and disease.
Nature genetics 2005;37(7):710-7.
2005: Mark S Dunstan; Debraj GuhaThakurta; David E Draper; Graeme L Conn
Coevolution of protein and RNA structures within a highly conserved ribosomal domain.
Chemistry & biology 2005;12(2):201-6.
2004: Debraj GuhaThakurta; Lawrence A Schriefer; Robert H Waterston; Gary stormo
Novel transcription regulatory elements in Caenorhabditis elegans muscle genes.
Genome research 2004;14(12):2457-68.
2004: Eric E Schadt; Stephen Wilton Edwards; Debraj GuhaThakurta; Daniel J Holder; Lisa Ying; Vladimir Svetnik; Amy Leonardson; Kyle W Hart; Archie Russell; Guoya Li; Guy Cavet; John Castle; Paul McDonagh; Zhengyan Kan; Ronghua Chen; Andrew Kasarskis; Mihai Margarint; Ramon M Caceres; Jason Johnson; Christopher D Armour; Philip Garrett-Engele; Nicholas F Tsinoremas; Daniel D Shoemaker
A comprehensive transcript index of the human genome generated using microarrays and computational approaches.
Genome biology 2004;5(10):R73.
2004: Jun Zhu; Pek Yee Lum; john lamb; Debraj GuhaThakurta; Stephen Wilton Edwards; Rolf Thieringer; Joel P Berger; M S Wu; J Thompson; Alan Sachs; Eric E Schadt
An integrative genomics approach to the reconstruction of gene networks in segregating populations.
Cytogenetic and genome research 2004;105(2-4):363-74.
2002: Tata Pramila; Shawna Miles; Debraj GuhaThakurta; Dave Jemiolo; Linda L Breeden
Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle.
Genes & development 2002;16(23):3034-45.
2002: Debraj GuhaThakurta; Lisanne Palomar; Gary stormo; Pat Tedesco; Thomas Johnson; David W Walker; Gordon Lithgow; Stuart Kim; Christopher D Link
Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods.
Genome research 2002;12(5):701-12.
2002: Debraj GuhaThakurta; Lawrence A Schriefer; Michelle Coutu Hresko; Robert H Waterston; Gary stormo
Identifying muscle regulatory elements and genes in the nematode Caenorhabditis elegans.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():425-36.
2001: Debraj GuhaThakurta; Gary stormo
Identifying target sites for cooperatively binding factors.
Bioinformatics (Oxford, England) 2001;17(7):608-21.
2000: Debraj GuhaThakurta; David E Draper
Contributions of basic residues to ribosomal protein L11 recognition of RNA.
Journal of molecular biology 2000;295(3):569-80.
1999: Debraj GuhaThakurta; David E Draper
Protein-RNA sequence covariation in a ribosomal protein-rRNA complex.
Biochemistry 1999;38(12):3633-40.