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Joseph Hacia

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Oligonucleotide Array Sequence Analysis

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Richard C Pelikan; Akiko Suzuki; Yang Chai; Junichi Iwata; Joseph G Hacia
Identification of candidate downstream targets of TGFβ signaling during palate development by genome-wide transcript profiling.
Ann B Moser; Oliver A Ryder; Junsong Zhao; Laura A Cox; Patricia K Dranchak; Jody Hey; Mazen W Karaman; Joseph G Hacia
Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells.
Rodrigo S Lacruz; Yaping Lei; Joseph D Miller; Michael L Paine; Alan Boyde; Timothy G Bromage; Joseph G Hacia; Yucheng Xu; Malcolm Snead
The circadian clock modulates enamel development.

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All Publications

2013: Richard C Pelikan; Akiko Suzuki; Yang Chai; Junichi Iwata; Joseph G Hacia
Identification of candidate downstream targets of TGFβ signaling during palate development by genome-wide transcript profiling.
Journal of cellular biochemistry 2013;114(4):796-807.
2013: Ann B Moser; Oliver A Ryder; Junsong Zhao; Laura A Cox; Patricia K Dranchak; Jody Hey; Mazen W Karaman; Joseph G Hacia
Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells.
Lipids in health and disease 2013;12():10.
2012: Rodrigo S Lacruz; Yaping Lei; Joseph D Miller; Michael L Paine; Alan Boyde; Timothy G Bromage; Joseph G Hacia; Yucheng Xu; Malcolm Snead
The circadian clock modulates enamel development.
Journal of biological rhythms 2012;27(3):237-45.
2012: Dong Han; Carolina Parada; Hu Zhao; Pablo Bringas; Joseph G Hacia; Yang Chai
A TGFβ-Smad4-Fgf6 signaling cascade controls myogenic differentiation and myoblast fusion during tongue development.
Development (Cambridge, England) 2012;139(9):1640-50.
2012: Rodrigo S Lacruz; Charles E Smith; Susan M Smith; Malcolm Snead; Pablo Bringas; Yi-Bu Chen; Joseph G Hacia; Michael J Hubbard; Ira Kurtz; Michael L Paine
Identification of novel candidate genes involved in mineralization of dental enamel by genome-wide transcript profiling.
Journal of cellular physiology 2012;227(5):2264-75.
2012: Jun-ichi Iwata; Pedro A Sanchez-Lara; Akiko Suzuki; Mark Urata; Joseph G Hacia; Yang Chai
Modulation of noncanonical TGF-β signaling prevents cleft palate in Tgfbr2 mutant mice.
The Journal of clinical investigation 2012;122(3):873-85.
2012: Jun-ichi Iwata; Carolina Parada; Richard Pelikan; Liza Ramenzoni; Pedro A Sanchez-Lara; Akiko Suzuki; Lily Tung; Mark Urata; Obaid Chaudhry; Joseph G Hacia; Yang Chai
Fibroblast growth factor 9 (FGF9)-pituitary homeobox 2 (PITX2) pathway mediates transforming growth factor β (TGFβ) signaling to regulate cell proliferation in palatal mesenchyme during mouse palatogenesis.
The Journal of biological chemistry 2012;287(4):2353-63.
2012: Sebastien Levesque; Pascale Marquis; Charles Morin; Steven J Steinberg; Josee Villeneuve; Wing Yan Yik; Ken Dewar; Simon-Pierre Guay; Joseph G Hacia; Sarn Jiralerspong; Luigi Bouchard; Nancy Braverman
A founder mutation in the PEX6 gene is responsible for increased incidence of Zellweger syndrome in a French Canadian population.
BMC medical genetics 2012;13():72.
2011: Rodrigo S Lacruz; Yi-Bu Chen; Joseph G Hacia; Michael J Hubbard; Charles E Smith; Michael L Paine
Gene-expression analysis of early- and late-maturation-stage rat enamel organ.
European journal of oral sciences 2011;119 Suppl 1():149-57.
2011: Patricia K Dranchak; Erminia Di Pietro; Ann Snowden; Nathan Oesch; Nancy E Braverman; Steven J Steinberg; Joseph G Hacia
Nonsense suppressor therapies rescue peroxisome lipid metabolism and assembly in cells from patients with specific PEX gene mutations.
Journal of cellular biochemistry 2011;112(5):1250-8.
2011: Ann B Moser; Hugo W Moser; Krishna Ramaswamy; Oliver A Ryder; Kimberly D Siegmund; Steven J Steinberg; Paul A Watkins; John J Ely; D Rick Lee; Joseph G Hacia
Human and great ape red blood cells differ in plasmalogen levels and composition.
Lipids in health and disease 2011;10():101.
2011: Rodrigo S Lacruz; Rajamani Lakshminarayanan; Keith M Bromley; Joseph G Hacia; Timothy G Bromage; Malcolm Snead; Janet Moradian-Oldak; Michael L Paine
Structural analysis of a repetitive protein sequence motif in strepsirrhine primate amelogenin.
PloS one 2011;6(3):e18028.
2010: Xiao-Ming Wang; Timothy C Greiner; Marina Bibikova; Brian L Pike; Kimberly D Siegmund; Uttam K Sinha; Markus Müschen; Erich B Jaeger; Dennis D Weisenburger; Wing C Chan; Darryl Shibata; Jian-Bing Fan; Joseph G Hacia
Identification and functional relevance of de novo DNA methylation in cancerous B-cell populations.
Journal of cellular biochemistry 2010;109(4):818-27.
2010: Paul A Watkins; Ann B Moser; Cicely B Toomer; Steven J Steinberg; Hugo W Moser; Mazen W Karaman; Krishna Ramaswamy; Kimberly D Siegmund; D Rick Lee; John J Ely; Oliver A Ryder; Joseph G Hacia
Identification of differences in human and great ape phytanic acid metabolism that could influence gene expression profiles and physiological functions.
BMC physiology 2010;10():19.
2009: Wing Yan Yik; Steven J Steinberg; Ann B Moser; Hugo W Moser; Joseph G Hacia
Identification of novel mutations and sequence variation in the Zellweger syndrome spectrum of peroxisome biogenesis disorders.
Human mutation 2009;30(3):E467-80.
2009: Donna M Toleno; Gabriel Renaud; Tyra G Wolfsberg; Munirul Islam; Derek E Wildman; Kimberly D Siegmund; Joseph G Hacia
Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.
BMC bioinformatics 2009;10():77.
2008: Darren Magda; Philip Lecane; Zhong Wang; Weilin Hu; Patricia Thiemann; Xuan Ma; Patricia K Dranchak; Xiaoming Wang; Vincent Lynch; Wenhao Wei; Viktor Csokai; Joseph G Hacia; Jonathan L Sessler
Synthesis and anticancer properties of water-soluble zinc ionophores.
Cancer research 2008;68(13):5318-25.
2008: Brian L Pike; T C Greiner; X Wang; Dennis D Weisenburger; Ya-Hsuan Hsu; G Renaud; T G Wolfsberg; M Kim; Daniel J Weisenberger; K D Siegmund; W Ye; S Groshen; Ruty Mehrian-Shai; J Delabie; W C Chan; P W Laird; Joseph G Hacia
DNA methylation profiles in diffuse large B-cell lymphoma and their relationship to gene expression status.
Leukemia 2008;22(5):1035-43.
2008: Joseph G Hacia; C Chang I Lee; Daniel F Jimenez; Mazen W Karaman; Vincent V Ho; Kimberley D Siegmund; Alice Tarantal
Age-related gene expression profiles of rhesus monkey bone marrow-derived mesenchymal stem cells.
Journal of cellular biochemistry 2008;103(4):1198-210.
2008: Darren Magda; Philip Lecane; Julia Prescott; Patricia Thiemann; Xuan Ma; Patricia K Dranchak; Donna M Toleno; Krishna Ramaswamy; Kimberly D Siegmund; Joseph G Hacia
mtDNA depletion confers specific gene expression profiles in human cells grown in culture and in xenograft.
BMC genomics 2008;9():521.
2007: Tony K S Ku; Dan C Nguyen; Mazen W Karaman; Parkash Gill; Joseph G Hacia; David L Crowe
Loss of p53 expression correlates with metastatic phenotype and transcriptional profile in a new mouse model of head and neck cancer.
Molecular cancer research : MCR 2007;5(4):351-62.
2007: Zhong Wang; Philip Lecane; Patti Thiemann; Qing Fan; Cecilia Cortez; Xuan Ma; Danielle Tonev; Dale Miles; Louie Naumovski; Richard A Miller; Darren Magda; Dong-Gyu Cho; Jonathan L Sessler; Brian L Pike; Samantha M Yeligar; Mazen W Karaman; Joseph G Hacia
Synthesis and biologic properties of hydrophilic sapphyrins, a new class of tumor-selective inhibitors of gene expression.
Molecular cancer 2007;6():9.
2006: Brian L Pike; Susan Groshen; Ya-Hsuan Hsu; Ruty Mehrian Shai; Xiaoming Wang; Nicholas Holtan; Bernard W Futscher; Joseph G Hacia
Comparisons of PCR-based genome amplification systems using CpG island microarrays.
Human mutation 2006;27(6):589-96.
2006: Timothy C Greiner; Chiranjib Dasgupta; Vincent V Ho; Dennis D Weisenburger; Lynette M Smith; James C Lynch; Julie M Vose; Kai Fu; James O Armitage; Rita M Braziel; Elias Campo; Jan Delabie; Randy D Gascoyne; Elaine S Jaffe; H Konrad Muller-Hermelink; German Ott; Andreas Rosenwald; Louis M Staudt; Michael Y Im; Mazen W Karaman; Brian L Pike; Wing C Chan; Joseph G Hacia
Mutation and genomic deletion status of ataxia telangiectasia mutated (ATM) and p53 confer specific gene expression profiles in mantle cell lymphoma.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(7):2352-7.
2005: Philip Lecane; Mazen W Karaman; Mint Sirisawad; Louie Naumovski; Richard A Miller; Joseph G Hacia; Darren Magda
Motexafin gadolinium and zinc induce oxidative stress responses and apoptosis in B-cell lymphoma lines.
Cancer research 2005;65(24):11676-88.
2005: Darren Magda; Philip Lecane; Richard A Miller; Cheryl Lepp; Dale Miles; Mimi Mesfin; John E Biaglow; Vincent V Ho; Danny Chawannakul; Shailender Nagpal; Mazen W Karaman; Joseph G Hacia
Motexafin gadolinium disrupts zinc metabolism in human cancer cell lines.
Cancer research 2005;65(9):3837-45.
2005: Elisheva Smith; Todd E Meyerrose; Thomas Kohler; Malka Namdar-Attar; Natti Bab; Olga Lahat; Tommy Noh; Jingjing Li; Mazen W Karaman; Joseph G Hacia; Ting T Chen; Jan A Nolta; Ralph Müller; Itai Bab; Baruch Frenkel
Leaky ribosomal scanning in mammalian genomes: significance of histone H4 alternative translation in vivo.
Nucleic acids research 2005;33(4):1298-308.
2005: Mazen W Karaman; Susan Groshen; Chi-Chiang Lee; Brian L Pike; Joseph G Hacia
Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays.
Nucleic acids research 2005;33(3):e33.
2004: Nathalie Leclerc; Cynthia A Luppen; Vincent V Ho; Shailender Nagpal; Joseph G Hacia; Elisheva Smith; Baruch Frenkel
Gene expression profiling of glucocorticoid-inhibited osteoblasts.
Journal of molecular endocrinology 2004;33(1):175-93.
2004: Steven M Lipkin; Laura S Rozek; Gad Rennert; Wei Yang; Peng-Chieh Chen; Joseph G Hacia; Nathan Hunt; Brian Shin; Steve Fodor; Mark Kokoris; Joel K Greenson; Eric R Fearon; Henry Lynch; Francis S Collins; Stephen B Gruber
The MLH1 D132H variant is associated with susceptibility to sporadic colorectal cancer.
Nature genetics 2004;36(7):694-9.
2004: Shailender Nagpal; Mazen W Karaman; Michelle M Timmerman; Vincent V Ho; Brian L Pike; Joseph G Hacia
Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks.
Nucleic acids research 2004;32(5):e51.
2003: Mazen W Karaman; Marlys L Houck; Leona G Chemnick; Shailender Nagpal; Daniel Chawannakul; Dominick Sudano; Brian L Pike; Vincent V Ho; Oliver A Ryder; Joseph G Hacia
Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts.
Genome research 2003;13(7):1619-30.
2003: Nicole Y Fang; Timothy C Greiner; Dennis D Weisenburger; Wing C Chan; Julie M Vose; Lynette M Smith; James O Armitage; R Aeryn Mayer; Brian L Pike; Francis S Collins; Joseph G Hacia
Oligonucleotide microarrays demonstrate the highest frequency of ATM mutations in the mantle cell subtype of lymphoma.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):5372-7.
2002: David L Crowe; Joseph G Hacia; C L Hsieh; Uttam K Sinha; H Rice
Molecular pathology of head and neck cancer.
Histology and histopathology 2002;17(3):909-14.
2001: Joseph G Hacia
Genome of the apes.
Trends in genetics : TIG 2001;17(11):637-45.
2000: Joseph G Hacia; Keith Edgemon; N Fang; R Aeryn Mayer; D Sudano; N Hunt; Francis S Collins
Oligonucleotide microarray based detection of repetitive sequence changes.
Human mutation 2000;16(4):354-63.
1999: Joseph G Hacia; Elizabeth A Novotny; R Aeryn Mayer; S A Woski; MA Ashlock; Francis S Collins
Design of modified oligodeoxyribonucleotide probes to detect telomere repeat sequences in FISH assays.
Nucleic acids research 1999;27(20):4034-9.
1999: Joseph G Hacia; Francis S Collins
Mutational analysis using oligonucleotide microarrays.
Journal of medical genetics 1999;36(10):730-6.
1999: Joseph G Hacia; Jian-Bing Fan; Oliver A Ryder; L Jin; Keith Edgemon; Ghassan Ghandour; R Aeryn Mayer; B Sun; Linda Hsie; Christiane M Robbins; Lawrence C Brody; D Wang; Eric S Lander; Rob Lipshutz; Steve Fodor; Francis S Collins
Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays.
Nature genetics 1999;22(2):164-7.
1999: Joseph G Hacia
Resequencing and mutational analysis using oligonucleotide microarrays.
Nature genetics 1999;21(1 Suppl):42-7.
1998: Joseph G Hacia; B Sun; N Hunt; Keith Edgemon; D Mosbrook; Christiane Robbins; Steve Fodor; Danilo A Tagle; Francis S Collins
Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays.
Genome research 1998;8(12):1245-58.
1998: Joseph G Hacia; Lawrence C Brody; Francis S Collins
Applications of DNA chips for genomic analysis.
Molecular psychiatry 1998;3(6):483-92.
1998: Joseph G Hacia; S A Woski; Jacqueline A Fidanza; Keith Edgemon; N Hunt; Glenn H McGall; Steve Fodor; Francis S Collins
Enhanced high density oligonucleotide array-based sequence analysis using modified nucleoside triphosphates.
Nucleic acids research 1998;26(21):4975-82.
1998: Joseph G Hacia; Keith Edgemon; B Sun; D Stern; Steve Fodor; Francis S Collins
Two color hybridization analysis using high density oligonucleotide arrays and energy transfer dyes.
Nucleic acids research 1998;26(16):3865-6.
1998: Joseph G Hacia; L C Brody; Francis S Collins
New approaches to BRCA1 mutation detection.
Breast disease 1998;10(1-2):45-59.
1998: Joseph G Hacia; W Makalowski; Keith Edgemon; Michael R Erdos; Christiane M Robbins; Steve Fodor; Lawrence C Brody; Francis S Collins
Evolutionary sequence comparisons using high-density oligonucleotide arrays.
Nature genetics 1998;18(2):155-8.
1996: Joseph G Hacia; Lawrence C Brody; M S Chee; Steve Fodor; Francis S Collins
Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis.
Nature genetics 1996;14(4):441-7.