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Shigeaki Harayama

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Koji Mori; Shigeaki Harayama
Methanobacterium petrolearium sp. nov. and Methanobacterium ferruginis sp. nov., mesophilic methanogens isolated from salty environments.
Koji Mori; Hirohito Tsurumaru; Shigeaki Harayama
Iron corrosion activity of anaerobic hydrogen-consuming microorganisms isolated from oil facilities.
Midori Kurahashi; Yukiyo Fukunaga; Yayoi Sakiyama; Shigeaki Harayama; Akira Yokota
Euzebya tangerina gen. nov., sp. nov., a deeply branching marine actinobacterium isolated from the sea cucumber Holothuria edulis, and proposal of Euzebyaceae fam. nov., Euzebyales ord. nov. and Nitriliruptoridae subclassis nov.

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2011: Koji Mori; Shigeaki Harayama
Methanobacterium petrolearium sp. nov. and Methanobacterium ferruginis sp. nov., mesophilic methanogens isolated from salty environments.
International journal of systematic and evolutionary microbiology 2011;61(Pt 1):138-43.
2010: Koji Mori; Hirohito Tsurumaru; Shigeaki Harayama
Iron corrosion activity of anaerobic hydrogen-consuming microorganisms isolated from oil facilities.
Journal of bioscience and bioengineering 2010;110(4):426-30.
2010: Midori Kurahashi; Yukiyo Fukunaga; Yayoi Sakiyama; Shigeaki Harayama; Akira Yokota
Euzebya tangerina gen. nov., sp. nov., a deeply branching marine actinobacterium isolated from the sea cucumber Holothuria edulis, and proposal of Euzebyaceae fam. nov., Euzebyales ord. nov. and Nitriliruptoridae subclassis nov.
International journal of systematic and evolutionary microbiology 2010;60(Pt 10):2314-9.
2010: Takao Iino; Koji Mori; Yoshihito Uchino; Tatsunori Nakagawa; Shigeaki Harayama; Ken-Ichiro Suzuki
Ignavibacterium album gen. nov., sp. nov., a moderately thermophilic anaerobic bacterium isolated from microbial mats at a terrestrial hot spring and proposal of Ignavibacteria classis nov., for a novel lineage at the periphery of green sulfur bacteria.
International journal of systematic and evolutionary microbiology 2010;60(Pt 6):1376-82.
2010: Moriyuki Hamada; Takao Iino; Takahiro Iwami; Shigeaki Harayama; Tomohiko Tamura; Ken-ichiro Suzuki
Mobilicoccus pelagius gen. nov., sp. nov. and Piscicoccus intestinalis gen. nov., sp. nov., two new members of the family Dermatophilaceae, and reclassification of Dermatophilus chelonae (Masters et al. 1995) as Austwickia chelonae gen. nov., comb. nov.
The Journal of general and applied microbiology 2010;56(6):427-36.
2009: Moriyuki Hamada; Takao Iino; Tomohiko Tamura; Takahiro Iwami; Shigeaki Harayama; Ken-Ichiro Suzuki
Serinibacter salmoneus gen. nov., sp. nov., an actinobacterium isolated from the intestinal tract of a fish, and emended descriptions of the families Beutenbergiaceae and Bogoriellaceae.
International journal of systematic and evolutionary microbiology 2009;59(Pt 11):2809-14.
2009: Yukiyo Fukunaga; Midori Kurahashi; Yayoi Sakiyama; Motoyuki Ohuchi; Akira Yokota; Shigeaki Harayama
Phycisphaera mikurensis gen. nov., sp. nov., isolated from a marine alga, and proposal of Phycisphaeraceae fam. nov., Phycisphaerales ord. nov. and Phycisphaerae classis nov. in the phylum Planctomycetes.
The Journal of general and applied microbiology 2009;55(4):267-75.
2009: Shams Khan; Shigeaki Harayama; Tomohiko Tamura; Katsuhiko Ando; Motoki Takagi; Shin-ya Kazuo
Paraoerskovia marina gen. nov., sp. nov., an actinobacterium isolated from marine sediment.
International journal of systematic and evolutionary microbiology 2009;59(Pt 8):2094-8.
2009: Midori Kurahashi; Yukiyo Fukunaga; Yayoi Sakiyama; Shigeaki Harayama; Akira Yokota
Iamia majanohamensis gen. nov., sp. nov., an actinobacterium isolated from sea cucumber Holothuria edulis, and proposal of Iamiaceae fam. nov.
International journal of systematic and evolutionary microbiology 2009;59(Pt 4):869-73.
2008: Yukiyo Fukunaga; Midori Kurahashi; Kensuke Yanagi; Akira Yokota; Shigeaki Harayama
Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'.
International journal of systematic and evolutionary microbiology 2008;58(Pt 11):2597-601.
2008: Hisayuki Komaki; Ryosuke Fudou; Takashi Iizuka; Daisuke Nakajima; Koei Okazaki; Daisuke Shibata; Makoto Ojika; Shigeaki Harayama
PCR detection of type I polyketide synthase genes in myxobacteria.
Applied and environmental microbiology 2008;74(17):5571-4.
2008: Kozue Anzai; Michiyo Ohno; Takuji Nakashima; Natsumi Kuwahara; Rieko Suzuki; Tomohiko Tamura; Hisayuki Komaki; Shinji Miyadoh; Shigeaki Harayama; Katsuhiko Ando
Taxonomic distribution of Streptomyces species capable of producing bioactive compounds among strains preserved at NITE/NBRC.
Applied microbiology and biotechnology 2008;80(2):287-95.
2008: Takao Iino; Tatsunori Nakagawa; Koji Mori; Shigeaki Harayama; Ken-Ichiro Suzuki
Calditerrivibrio nitroreducens gen. nov., sp. nov., a thermophilic, nitrate-reducing bacterium isolated from a terrestrial hot spring in Japan.
International journal of systematic and evolutionary microbiology 2008;58(Pt 7):1675-9.
2008: Shams Khan; Yasuyoshi Nakagawa; Shigeaki Harayama
Fulvibacter tottoriensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment.
International journal of systematic and evolutionary microbiology 2008;58(Pt 7):1670-4.
2008: Daisuke Koma; Toshiya Sawai; Ryotaro Hara; Shigeaki Harayama; Kuniki Kino
Two groups of thermophilic amino acid aminotransferases exhibiting broad substrate specificities for the synthesis of phenylglycine derivatives.
Applied microbiology and biotechnology 2008;79(5):775-84.
2008: Hiromi Takarada; Mitsuo Sekine; Hiroki Kosugi; Yasunori Matsuo; Takatomo Fujisawa; Seiha Omata; Emi Kishi; Ai Shimizu; Naofumi Tsukatani; Satoshi Tanikawa; Nobuyuki Fujita; Shigeaki Harayama
Complete genome sequence of the soil actinomycete Kocuria rhizophila.
Journal of bacteriology 2008;190(12):4139-46.
2008: Kazutaka Yamada; Takeshi Terahara; Shinya Kurata; Toyokazu Yokomaku; Satoshi Tsuneda; Shigeaki Harayama
Retrieval of entire genes from environmental DNA by inverse PCR with pre-amplification of target genes using primers containing locked nucleic acids.
Environmental microbiology 2008;10(4):978-87.
2008: Midori Kurahashi; Yukiyo Fukunaga; Shigeaki Harayama; Akira Yokota
Sneathiella glossodoripedis sp. nov., a marine alphaproteobacterium isolated from the nudibranch Glossodoris cincta, and proposal of Sneathiellales ord. nov. and Sneathiellaceae fam. nov.
International journal of systematic and evolutionary microbiology 2008;58(Pt 3):548-52.
2007: Makoto Urai; Hiroshi Yoshizaki; Hirosi Anzai; Jun Ogihara; Noriyuki Iwabuchi; Shigeaki Harayama; Michio Sunairi; Mutsuyasu Nakajima
Structural analysis of mucoidan, an acidic extracellular polysaccharide produced by a pristane-assimilating marine bacterium, Rhodococcus erythropolis PR4.
Carbohydrate research 2007;342(7):927-32.
2007: Makoto Urai; Hiroshi Yoshizaki; Hirosi Anzai; Jun Ogihara; Noriyuki Iwabuchi; Shigeaki Harayama; Michio Sunairi; Mutsuyasu Nakajima
Structural analysis of an acidic, fatty acid ester-bonded extracellular polysaccharide produced by a pristane-assimilating marine bacterium, Rhodococcus erythropolis PR4.
Carbohydrate research 2007;342(7):933-42.
2007: Hironori Taki; Kazuaki Syutsubo; Richard G Mattison; Shigeaki Harayama
Identification and characterization of o-xylene-degrading Rhodococcus spp. which were dominant species in the remediation of o-xylene-contaminated soils.
Biodegradation 2007;18(1):17-26.
2006: Xue Peng; Hironori Taki; Syoko Komukai; Mitsuo Sekine; Kaneo Kanoh; Hiroaki Kasai; Seon-Kang Choi; Seiha Omata; Satoshi Tanikawa; Shigeaki Harayama; Norihiko Misawa
Characterization of four Rhodococcus alcohol dehydrogenase genes responsible for the oxidation of aromatic alcohols.
Applied microbiology and biotechnology 2006;71(6):824-32.
2006: Makoto Urai; Hirosi Anzai; Jun Ogihara; Noriyuki Iwabuchi; Shigeaki Harayama; Michio Sunairi; Mutsuyasu Nakajima
Structural analysis of an extracellular polysaccharide produced by Rhodococcus rhodochrous strain S-2.
Carbohydrate research 2006;341(6):766-775.
2005: Richard G Mattison; Hironori Taki; Shigeaki Harayama
The soil flagellate Heteromita globosa accelerates bacterial degradation of alkylbenzenes through grazing and acetate excretion in batch culture.
Microbial ecology 2005;49(1):142-50.
2004: Kouhei Ohnishi; Akiko Okuta; Jiansong Ju; Tohru Hamada; Haruo Misono; Shigeaki Harayama
Molecular breeding of 2,3-dihydroxybiphenyl 1,2-dioxygenase for enhanced resistance to 3-chlorocatechol.
Journal of biochemistry 2004;135(3):305-17.
2004: Akiko Okuta; Kouhei Ohnishi; Shigeaki Harayama
Construction of chimeric catechol 2,3-dioxygenase exhibiting improved activity against the suicide inhibitor 4-methylcatechol.
Applied and environmental microbiology 2004;70(3):1804-10.
2004: Akihiro Hara; Sang-ho Baik; Kazuaki Syutsubo; Norihiko Misawa; Theo H M Smits; Jan B van Beilen; Shigeaki Harayama
Cloning and functional analysis of alkB genes in Alcanivorax borkumensis SK2.
Environmental microbiology 2004;6(3):191-7.
2003: Yuki Kasai; Kazutoshi Shindo; Shigeaki Harayama; Norihiko Misawa
Molecular characterization and substrate preference of a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5.
Applied and environmental microbiology 2003;69(11):6688-97.
2003: Akihiro Hara; Kazuaki Syutsubo; Shigeaki Harayama
Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation.
Environmental microbiology 2003;5(9):746-53.
2003: Teruhiko Ide; Sang-Ho Baik; Takao Matsuba; Shigeaki Harayama
Identification by the phage-display technique of peptides that bind to H7 flagellin of Escherichia coli.
Bioscience, biotechnology, and biochemistry 2003;67(6):1335-41.
2003: S-H Baik; T Ide; H Yoshida; O Kagami; Shigeaki Harayama
Significantly enhanced stability of glucose dehydrogenase by directed evolution.
Applied microbiology and biotechnology 2003;61(4):329-35.
2003: Akiko Okuta; Kouhei Ohnishi; Sakiko Yagame; Shigeaki Harayama
Intersubunit interaction and catalytic activity of catechol 2,3-dioxygenases.
The Biochemical journal 2003;371(Pt 2):557-64.
2003: Jun-ichi Tanaka; Kazuaki Syutsubo; Kazuya Watanabe; Hitoshi Izumida; Shigeaki Harayama
Activity and population structure of nitrifying bacteria in an activated-sludge reactor containing polymer beads.
Environmental microbiology 2003;5(4):278-86.
2003: Xue Peng; Norihiko Misawa; Shigeaki Harayama
Isolation and characterization of thermophilic bacilli degrading cinnamic, 4-coumaric, and ferulic acids.
Applied and environmental microbiology 2003;69(3):1417-27.
2003: Yoshihide Matsuo; Makoto Suzuki; Hiroaki Kasai; Yoshikazu Shizuri; Shigeaki Harayama
Isolation and phylogenetic characterization of bacteria capable of inducing differentiation in the green alga Monostroma oxyspermum.
Environmental microbiology 2003;5(1):25-35.
2002: Robert A Kanaly; Shigeaki Harayama; Kazuya Watanabe
Rhodanobacter sp. strain BPC1 in a benzo[a]pyrene-mineralizing bacterial consortium.
Applied and environmental microbiology 2002;68(12):5826-33.
2002: Yuki Kasai; Hideo Kishira; Shigeaki Harayama
Bacteria belonging to the genus cycloclasticus play a primary role in the degradation of aromatic hydrocarbons released in a marine environment.
Applied and environmental microbiology 2002;68(11):5625-33.
2002: Kazuya Watanabe; Maki Teramoto; Shigeaki Harayama
Stable augmentation of activated sludge with foreign catabolic genes harboured by an indigenous dominant bacterium.
Environmental microbiology 2002;4(10):577-83.
2002: Richard G Mattison; Hironori Taki; Shigeaki Harayama
The bacterivorous soil flagellate Heteromita globosa reduces bacterial clogging under denitrifying conditions in sand-filled aquifer columns.
Applied and environmental microbiology 2002;68(9):4539-45.
2002: Kazuya Watanabe; Hiroyuki Futamata; Shigeaki Harayama
Understanding the diversity in catabolic potential of microorganisms for the development of bioremediation strategies.
Antonie van Leeuwenhoek 2002;81(1-4):655-63.
2002: Maki Teramoto; Kouhei Ohnishi; Shigeaki Harayama; Kazuya Watanabe
An AraC/XylS family member at a high level in a hierarchy of regulators for phenol-metabolizing enzymes in Comamonas testosteroni R5.
Journal of bacteriology 2002;184(14):3941-6.
2002: Noriyuki Iwabuchi; Michio Sunairi; Makoto Urai; Chiaki Itoh; Hirosi Anzai; Mutsuyasu Nakajima; Shigeaki Harayama
Extracellular polysaccharides of Rhodococcus rhodochrous S-2 stimulate the degradation of aromatic components in crude oil by indigenous marine bacteria.
Applied and environmental microbiology 2002;68(5):2337-43.
2002: Yuki Kasai; Hideo Kishira; Tetsuya Sasaki; Kazuaki Syutsubo; Kazuya Watanabe; Shigeaki Harayama
Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water.
Environmental microbiology 2002;4(3):141-7.
2002: Miho Kikuchi; Shigeaki Harayama
DNA shuffling and family shuffling for in vitro gene evolution.
Methods in molecular biology (Clifton, N.J.) 2002;182():243-57.
2001: Hiroyuki Futamata; Shigeaki Harayama; Kazuya Watanabe
Group-specific monitoring of phenol hydroxylase genes for a functional assessment of phenol-stimulated trichloroethylene bioremediation.
Applied and environmental microbiology 2001;67(10):4671-7.
2001: M Suzuki; Y Nakagawa; Shigeaki Harayama; S Yamamoto
Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov.
International journal of systematic and evolutionary microbiology 2001;51(Pt 5):1639-52.
2001: H Maki; T Sasaki; Shigeaki Harayama
Photo-oxidation of biodegraded crude oil and toxicity of the photo-oxidized products.
Chemosphere 2001;44(5):1145-51.
2001: Maki Teramoto; Shigeaki Harayama; Kazuya Watanabe
PhcS represses gratuitous expression of phenol-metabolizing enzymes in Comamonas testosteroni R5.
Journal of bacteriology 2001;183(14):4227-34.
2001: Kazuaki Syutsubo; Hideo Kishira; Shigeaki Harayama
Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains.
Environmental microbiology 2001;3(6):371-9.
2001: Yuki Kasai; Hideo Kishira; Kazuaki Syutsubo; Shigeaki Harayama
Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident.
Environmental microbiology 2001;3(4):246-55.
2001: T K Dutta; Shigeaki Harayama
Biodegradation of n-alkylcycloalkanes and n-alkylbenzenes via new pathways in Alcanivorax sp. strain MBIC 4326.
Applied and environmental microbiology 2001;67(4):1970-4.
2001: Kazuya Watanabe; Yumiko Kodama; Shigeaki Harayama
Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting.
Journal of microbiological methods 2001;44(3):253-62.
2001: Robert A Kanaly; R Bartha; Kazuya Watanabe; Shigeaki Harayama
Enhanced mineralization of benzo[a]pyrene in the presence of nonaqueous phase liquids.
Environmental toxicology and chemistry / SETAC 2001;20(3):498-501.
2001: Hiroyuki Futamata; Shigeaki Harayama; Kazuya Watanabe
Diversity in kinetics of trichloroethylene-degrading activities exhibited by phenol-degrading bacteria.
Applied microbiology and biotechnology 2001;55(2):248-53.
2001: Paul Baker; Hiroyuki Futamata; Shigeaki Harayama; Kazuya Watanabe
Bacterial populations occuring in a trichloroethylene-contaminated aquifer during methane injection.
Environmental microbiology 2001;3(3):187-93.
2001: T K Dutta; Shigeaki Harayama
Time-of-flight mass spectrometric analysis of high-molecular-weight alkanes in crude oil by silver nitrate chemical ionization after laser desorption.
Analytical chemistry 2001;73(5):864-9.
2001: T K Dutta; Shigeaki Harayama
Analysis of long-side-chain alkylaromatics in crude oil for evaluation of their fate in the environment.
Environmental science & technology 2001;35(1):102-7.
2001: Richard G Mattison; Shigeaki Harayama
The predatory soil flagellate Heteromita globosa stimulates toluene biodegradation by a Pseudomonas sp.
FEMS microbiology letters 2001;194(1):39-45.
2001: Kazuya Watanabe; J Nelson; Shigeaki Harayama; H Kasai
ICB database: the gyrB database for identification and classification of bacteria.
Nucleic acids research 2001;29(1):344-5.
2000: Noriyuki Iwabuchi; Michio Sunairi; Hirosi Anzai; Mutsuyasu Nakajima; Shigeaki Harayama
Relationships between colony morphotypes and oil tolerance in Rhodococcus rhodochrous.
Applied and environmental microbiology 2000;66(11):5073-7.
2000: Kazuya Watanabe; K Watanabe; Yumiko Kodama; Kazuaki Syutsubo; Shigeaki Harayama
Molecular characterization of bacterial populations in petroleum-contaminated groundwater discharged from underground crude oil storage cavities.
Applied and environmental microbiology 2000;66(11):4803-9.
2000: S Yamamoto; H Kasai; Dawn L Arnold; Robert W Jackson; Alan Vivian; Shigeaki Harayama
Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes.
Microbiology (Reading, England) 2000;146 ( Pt 10)():2385-94.
2000: Robert A Kanaly; R Bartha; Kazuya Watanabe; Shigeaki Harayama
Rapid mineralization of benzo[a]pyrene by a microbial consortium growing on diesel fuel.
Applied and environmental microbiology 2000;66(10):4205-11.
2000: Kazuya Watanabe; M Miyashita; Shigeaki Harayama
Starvation improves survival of bacteria introduced into activated sludge.
Applied and environmental microbiology 2000;66(9):3905-10.
2000: A Saito; T Iwabuchi; Shigeaki Harayama
A novel phenanthrene dioxygenase from Nocardioides sp. Strain KP7: expression in Escherichia coli.
Journal of bacteriology 2000;182(8):2134-41.
2000: Robert A Kanaly; Shigeaki Harayama
Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria.
Journal of bacteriology 2000;182(8):2059-67.
2000: M Kikuchi; Kouhei Ohnishi; Shigeaki Harayama
An effective family shuffling method using single-stranded DNA.
Gene 2000;243(1-2):133-7.
2000: H Kasai; T Tamura; Shigeaki Harayama
Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness.
International journal of systematic and evolutionary microbiology 2000;50 Pt 1():127-34.
2000: H Kasai; T Ezaki; Shigeaki Harayama
Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences.
Journal of clinical microbiology 2000;38(1):301-8.
1999: Maki Teramoto; Hiroyuki Futamata; Shigeaki Harayama; Kazuya Watanabe
Characterization of a high-affinity phenol hydroxylase from Comamonas testosteroni R5 by gene cloning, and expression in Pseudomonas aeruginosa PAO1c.
Molecular & general genetics : MGG 1999;262(3):552-8.
1999: M Suzuki; Y Nakagawa; Shigeaki Harayama; S Yamamoto
Phylogenetic analysis of genus Marinilabilia and related bacteria based on the amino acid sequences of gyrB and emended description of Marinilabilia salmonicolor with Marinilabilia agarovorans as its subjective synonym.
International journal of systematic bacteriology 1999;49 Pt 4():1551-7.
1999: M Kikuchi; Kouhei Ohnishi; Shigeaki Harayama
Novel family shuffling methods for the in vitro evolution of enzymes.
Gene 1999;236(1):159-67.
1999: Shigeaki Harayama; Hideo Kishira; Yuki Kasai; K Shutsubo
Petroleum biodegradation in marine environments.
Journal of molecular microbiology and biotechnology 1999;1(1):63-70.
1999: Kazuya Watanabe; Maki Teramoto; Shigeaki Harayama
An outbreak of nonflocculating catabolic populations caused the breakdown of a phenol-digesting activated-sludge process.
Applied and environmental microbiology 1999;65(7):2813-9.
1999: A Saito; T Iwabuchi; Shigeaki Harayama
Characterization of genes for enzymes involved in the phenanthrene degradation in Nocardioides sp. KP7.
Chemosphere 1999;38(6):1331-7.
1999: S Yamamoto; P J Bouvet; Shigeaki Harayama
Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA-DNA hybridization.
International journal of systematic bacteriology 1999;49 Pt 1():87-95.
1998: Kazuya Watanabe; Maki Teramoto; Hiroyuki Futamata; Shigeaki Harayama
Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge.
Applied and environmental microbiology 1998;64(11):4396-402.
1998: Akiko Okuta; Kouhei Ohnishi; Shigeaki Harayama
PCR isolation of catechol 2,3-dioxygenase gene fragments from environmental samples and their assembly into functional genes.
Gene 1998;212(2):221-8.
1998: T Iwabuchi; Shigeaki Harayama
Biochemical and molecular characterization of 1-hydroxy-2-naphthoate dioxygenase from Nocardioides sp. KP7.
The Journal of biological chemistry 1998;273(14):8332-6.
1998: T Iwabuchi; Shigeaki Harayama
Biochemical and genetic characterization of trans-2'-carboxybenzalpyruvate hydratase-aldolase from a phenanthrene-degrading Nocardioides strain.
Journal of bacteriology 1998;180(4):945-9.
1998: K Venkateswaran; N Dohmoto; Shigeaki Harayama
Cloning and nucleotide sequence of the gyrB gene of Vibrio parahaemolyticus and its application in detection of this pathogen in shrimp.
Applied and environmental microbiology 1998;64(2):681-7.
1997: T Iwabuchi; Shigeaki Harayama
Biochemical and genetic characterization of 2-carboxybenzaldehyde dehydrogenase, an enzyme involved in phenanthrene degradation by Nocardioides sp. strain KP7.
Journal of bacteriology 1997;179(20):6488-94.
1996: K Inoue; Y Takeuchi; S Takeyama; E Yamaha; F Yamazaki; S Odo; Shigeaki Harayama
Adhesive protein cDNA sequence of the mussel Mytilus coruscus and its evolutionary implications.
Journal of molecular evolution 1996;43(4):348-56.
1996: M Shimao; T Tamogami; K Nishi; Shigeaki Harayama
Cloning and characterization of the gene encoding pyrroloquinoline quinone-dependent poly(vinyl alcohol) dehydrogenase of Pseudomonas sp. strain VM15C.
Bioscience, biotechnology, and biochemistry 1996;60(7):1056-62.
1996: M Shimao; T Nakamura; A Okuda; Shigeaki Harayama
Characteristics of transposon insertion mutants of mandelic acid-utilizing Pseudomonas putida strain A10L.
Bioscience, biotechnology, and biochemistry 1996;60(7):1051-5.
1996: K Inoue; Y Takeuchi; D Miki; S Odo; Shigeaki Harayama; J H Waite
Cloning, sequencing and sites of expression of genes for the hydroxyarginine-containing adhesive-plaque protein of the mussel Mytilus galloprovincialis.
European journal of biochemistry / FEBS 1996;239(1):172-6.
1996: S Yamamoto; Shigeaki Harayama
Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products.
International journal of systematic bacteriology 1996;46(2):506-11.
1995: K Inoue; J H Waite; M Matsuoka; S Odo; Shigeaki Harayama
Interspecific variations in adhesive protein sequences of Mytilus edulis, M. galloprovincialis, and M. trossulus.
The Biological bulletin 1995;189(3):370-5.
1995: K Venkateswaran; Shigeaki Harayama
Sequential enrichment of microbial populations exhibiting enhanced biodegradation of crude oil.
Canadian journal of microbiology 1995;41(9):767-75.
1995: J Fernandez; A A Dimarco; L Nicholas Ornston; Shigeaki Harayama
Purification and characterization of Acinetobacter calcoaceticus 4-hydroxybenzoate 3-hydroxylase after its overexpression in Escherichia coli.
Journal of biochemistry 1995;117(6):1261-6.
1995: S Odo; K Kamino; S Kanai; Tadashi Maruyama; Shigeaki Harayama
Biochemical characterization of a Ca(2+)-dependent lectin from the hemolymph of a photosymbiotic marine bivalve, Tridacna derasa (Röding).
Journal of biochemistry 1995;117(5):965-73.
1995: P Cerdan; M Rekik; Shigeaki Harayama
Substrate specificity differences between two catechol 2,3-dioxygenases encoded by the TOL and NAH plasmids from Pseudomonas putida.
European journal of biochemistry / FEBS 1995;229(1):113-8.
1995: J Inoue; J P Shaw; M Rekik; Shigeaki Harayama
Overlapping substrate specificities of benzaldehyde dehydrogenase (the xylC gene product) and 2-hydroxymuconic semialdehyde dehydrogenase (the xylG gene product) encoded by TOL plasmid pWW0 of Pseudomonas putida.
Journal of bacteriology 1995;177(5):1196-201.
1995: S Yamamoto; Shigeaki Harayama
PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains.
Applied and environmental microbiology 1995;61(3):1104-9.
1994: M Kok; M Rekik; Bernard Witholt; Shigeaki Harayama
Conversion of pBR322-based plasmids into broad-host-range vectors by using the Tn3 transposition mechanism.
Journal of bacteriology 1994;176(21):6566-71.
1994: P Cerdan; A Wasserfallen; M Rekik; K N Timmis; Shigeaki Harayama
Substrate specificity of catechol 2,3-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida and its relationship to cell growth.
Journal of bacteriology 1994;176(19):6074-81.
1994: Shigeaki Harayama
Codon usage patterns suggest independent evolution of two catabolic operons on toluene-degradative plasmid TOL pWW0 of Pseudomonas putida.
Journal of molecular evolution 1994;38(4):328-35.
1994: T Köhler; J F Alvarez; Shigeaki Harayama
Regulation of the rpoN, ORF102 and ORF154 genes in Pseudomonas putida.
FEMS microbiology letters 1994;115(2-3):177-84.
1993: A Polissi; Shigeaki Harayama
In vivo reactivation of catechol 2,3-dioxygenase mediated by a chloroplast-type ferredoxin: a bacterial strategy to expand the substrate specificity of aromatic degradative pathways.
The EMBO journal 1993;12(8):3339-47.
1993: J P Shaw; M Rekik; francoise schwager; Shigeaki Harayama
Kinetic studies on benzyl alcohol dehydrogenase encoded by TOL plasmid pWWO. A member of the zinc-containing long chain alcohol dehydrogenase family.
The Journal of biological chemistry 1993;268(15):10842-50.
1993: Shigeaki Harayama; M Rekik
Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution.
Molecular & general genetics : MGG 1993;239(1-2):81-9.
1992: J P Shaw; Shigeaki Harayama
Purification and characterisation of the NADH:acceptor reductase component of xylene monooxygenase encoded by the TOL plasmid pWW0 of Pseudomonas putida mt-2.
European journal of biochemistry / FEBS 1992;209(1):51-61.
1992: J P Shaw; francoise schwager; Shigeaki Harayama
Substrate-specificity of benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase encoded by TOL plasmid pWW0. Metabolic and mechanistic implications.
The Biochemical journal 1992;283 ( Pt 3)():789-94.
1992: Ellen Neidle; C Hartnett; L Nicholas Ornston; Amos Bairoch; M Rekik; Shigeaki Harayama
cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily.
European journal of biochemistry / FEBS 1992;204(1):113-20.
1992: Shigeaki Harayama; M Kok; Ellen Neidle
Functional and evolutionary relationships among diverse oxygenases.
Annual review of microbiology 1992;46():565-601.
1991: Shigeaki Harayama; M Rekik; Amos Bairoch; Ellen Neidle; L Nicholas Ornston
Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases.
Journal of bacteriology 1991;173(23):7540-8.
1991: Ellen Neidle; C Hartnett; L Nicholas Ornston; Amos Bairoch; M Rekik; Shigeaki Harayama
Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases.
Journal of bacteriology 1991;173(17):5385-95.
1991: Shigeaki Harayama; A Polissi; M Rekik
Divergent evolution of chloroplast-type ferredoxins.
FEBS letters 1991;285(1):85-8.
1991: M Suzuki; T Hayakawa; J P Shaw; M Rekik; Shigeaki Harayama
Primary structure of xylene monooxygenase: similarities to and differences from the alkane hydroxylation system.
Journal of bacteriology 1991;173(5):1690-5.
1991: H Nikaido; K Nikaido; Shigeaki Harayama
Identification and characterization of porins in Pseudomonas aeruginosa.
The Journal of biological chemistry 1991;266(2):770-9.
1990: N Hugouvieux-Cotte-Pattat; T Köhler; M Rekik; Shigeaki Harayama
Growth-phase-dependent expression of the Pseudomonas putida TOL plasmid pWW0 catabolic genes.
Journal of bacteriology 1990;172(12):6651-60.
1990: J P Shaw; Shigeaki Harayama
Purification and characterisation of TOL plasmid-encoded benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase of Pseudomonas putida.
European journal of biochemistry / FEBS 1990;191(3):705-14.
1990: Shigeaki Harayama; M Rekik
The meta cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes.
Molecular & general genetics : MGG 1990;221(1):113-20.
1989: T Köhler; J M Cayrol; J L Ramos; Shigeaki Harayama
Nucleotide and deduced amino acid sequence of the RpoN sigma-factor of Pseudomonas putida.
Nucleic acids research 1989;17(23):10125.
1989: Shigeaki Harayama; M Rekik; K L Ngai; L Nicholas Ornston
Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida.
Journal of bacteriology 1989;171(11):6251-8.
1989: Shigeaki Harayama; M Rekik
Bacterial aromatic ring-cleavage enzymes are classified into two different gene families.
The Journal of biological chemistry 1989;264(26):15328-33.
1989: Shigeaki Harayama; M Rekik; M Wubbolts; K Rose; R A Leppik; K N Timmis
Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products.
Journal of bacteriology 1989;171(9):5048-55.
1989: T Köhler; Shigeaki Harayama; J L Ramos; K N Timmis
Involvement of Pseudomonas putida RpoN sigma factor in regulation of various metabolic functions.
Journal of bacteriology 1989;171(8):4326-33.
1989: Shigeaki Harayama; M Rekik
A simple procedure for transferring genes cloned in Escherichia coli vectors into other gram-negative bacteria: phenotypic analysis and mapping of TOL plasmid gene xylK.
Gene 1989;78(1):19-27.
1987: Shigeaki Harayama; M Rekik; A Wasserfallen; Amos Bairoch
Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids.
Molecular & general genetics : MGG 1987;210(2):241-7.
1987: Shigeaki Harayama; N Mermod; M Rekik; P R Lehrbach; K N Timmis
Roles of the divergent branches of the meta-cleavage pathway in the degradation of benzoate and substituted benzoates.
Journal of bacteriology 1987;169(2):558-64.
1986: Shigeaki Harayama; R A Leppik; M Rekik; N Mermod; P R Lehrbach; W Reineke; K N Timmis
Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product.
Journal of bacteriology 1986;167(2):455-61.
1986: Shigeaki Harayama; M Rekik; K N Timmis
Genetic analysis of a relaxed substrate specificity aromatic ring dioxygenase, toluate 1,2-dioxygenase, encoded by TOL plasmid pWW0 of Pseudomonas putida.
Molecular & general genetics : MGG 1986;202(2):226-34.
1984: Shigeaki Harayama; P R Lehrbach; K N Timmis
Transposon mutagenesis analysis of meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2.
Journal of bacteriology 1984;160(1):251-5.