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Daniel Hartl

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Rachel Daniels; Elizabeth J Hamilton; Daniel L Hartl; Amanda K Lukens; Souleymane MBoup; Daouda Ndiaye; Daniel E Neafsey; Danny C Park; Pardis C Sabeti; Stephen F Schaffner; Papa Diogoye Séne; Daria Van Tyne; Hsiao-Han Chang; Dyann F Wirth; Sarah K Volkman
Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal.
Timothy B Sackton; Daniel L Hartl
Meta-analysis reveals that genes regulated by the Y chromosome in Drosophila melanogaster are preferentially localized to repressive chromatin.
Hsiao-Han Chang; Kevin J Galinsky; Souleymane MBoup; Daouda Ndiaye; Omar Ndir; Daniel E Neafsey; Daniel J Park; Pardis C Sabeti; Stephen F Schaffner; Sarah K Volkman; Roger C Wiegand; Dyann F Wirth; Daniel L Hartl
Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population.

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All Publications

2013: Rachel Daniels; Elizabeth J Hamilton; Daniel L Hartl; Amanda K Lukens; Souleymane MBoup; Daouda Ndiaye; Daniel E Neafsey; Danny C Park; Pardis C Sabeti; Stephen F Schaffner; Papa Diogoye Séne; Daria Van Tyne; Hsiao-Han Chang; Dyann F Wirth; Sarah K Volkman
Genetic Surveillance Detects Both Clonal and Epidemic Transmission of Malaria following Enhanced Intervention in Senegal.
PloS one 2013;8(4):e60780.
2013: Timothy B Sackton; Daniel L Hartl
Meta-analysis reveals that genes regulated by the Y chromosome in Drosophila melanogaster are preferentially localized to repressive chromatin.
Genome biology and evolution 2013;5(1):255-66.
2012: Hsiao-Han Chang; Kevin J Galinsky; Souleymane MBoup; Daouda Ndiaye; Omar Ndir; Daniel E Neafsey; Daniel J Park; Pardis C Sabeti; Stephen F Schaffner; Sarah K Volkman; Roger C Wiegand; Dyann F Wirth; Daniel L Hartl
Genomic sequencing of Plasmodium falciparum malaria parasites from Senegal reveals the demographic history of the population.
Molecular biology and evolution 2012;29(11):3427-39.
2012: Daniel J Park; Ulf Ribacke; Pardis C Sabeti; Stephen F Schaffner; Clarissa Valim; Daria Van Tyne; Roger C Wiegand; Dyann F Wirth; Justin S Becker; Hsiao-Han Chang; Kevin Galinsky; Meghan Galligan; Daniel L Hartl; Amanda K Lukens; Souleymane MBoup; Daouda Ndiaye; Daniel E Neafsey; Sarah K Volkman
Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasite.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(32):13052-7.
2012: Jun Zhou; Thomas H Eickbush; Bernardo Lemos; Lene Martinsen; Timothy B Sackton; Daniel L Hartl
Y chromosome mediates ribosomal DNA silencing and modulates the chromatin state in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(25):9941-6.
2012: Sarah K Volkman; Rachel F Daniels; Mahamadou DIAKITE; Daniel L Hartl; Ousmane A Koita; Donald J Krogstad; Marc A T Muskavitch; Daouda Ndiaye; Daniel E Neafsey; Davis Nwakanma; Daniel J Park; Pardis C Sabeti; Dyann F Wirth
Application of genomics to field investigations of malaria by the international centers of excellence for malaria research.
Acta tropica 2012;121(3):324-32.
2012: Rebekah L Rogers; Daniel L Hartl
Chimeric genes as a source of rapid evolution in Drosophila melanogaster.
Molecular biology and evolution 2012;29(2):517-29.
2012: Russell B Corbett-Detig; Daniel L Hartl
Population genomics of inversion polymorphisms in Drosophila melanogaster.
PLoS genetics 2012;8(12):e1003056.
2011: Timothy B Sackton; Horacio Montenegro; Daniel L Hartl; Bernardo Lemos
Interspecific Y chromosome introgressions disrupt testis-specific gene expression and male reproductive phenotypes in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(41):17046-51.
2011: Marna S Costanzo; Daniel L Hartl
The evolutionary landscape of antifolate resistance in Plasmodium falciparum.
Journal of genetics 2011;90(2):187-90.
2011: Kerry A Geiler-Samerotte; Michael F Dion; Bogdan A Budnik; Stephanie M Wang; Daniel L Hartl; D Allan Drummond
Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(2):680-5.
2011: Mauricio O Carneiro; Clifford H Taubes; Daniel L Hartl
Model transcriptional networks with continuously varying expression levels.
BMC evolutionary biology 2011;11():363.
2011: Jun Zhou; Bernardo Lemos; Erik B Dopman; Daniel L Hartl
Copy-number variation: the balance between gene dosage and expression in Drosophila melanogaster.
Genome biology and evolution 2011;3():1014-24.
2011: Marna S Costanzo; Kyle M Brown; Daniel L Hartl
Fitness trade-offs in the evolution of dihydrofolate reductase and drug resistance in Plasmodium falciparum.
PloS one 2011;6(5):e19636.
2010: Kyle M Brown; Marna S Costanzo; Wenxin Xu; Scott Roy; Elena R Lozovsky; Daniel L Hartl
Compensatory mutations restore fitness during the evolution of dihydrofolate reductase.
Molecular biology and evolution 2010;27(12):2682-90.
2010: Bernardo Lemos; Alan T Branco; Daniel L Hartl
Epigenetic effects of polymorphic Y chromosomes modulate chromatin components, immune response, and sexual conflict.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(36):15826-31.
2010: Pan-Pan Jiang; Daniel L Hartl; Bernardo Lemos
Y not a dead end: epistatic interactions between Y-linked regulatory polymorphisms and genetic background affect global gene expression in Drosophila melanogaster.
Genetics 2010;186(1):109-18.
2010: Martine M Zilversmit; Sarah K Volkman; Mark A DePristo; Dyann F Wirth; Philip Awadalla; Daniel L Hartl
Low-complexity regions in Plasmodium falciparum: missing links in the evolution of an extreme genome.
Molecular biology and evolution 2010;27(9):2198-209.
2010: Rebekah L Rogers; Trevor Bedford; Ana M Lyons; Daniel L Hartl
Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(24):10943-8.
2010: Sharmini Gunawardena; Nadira D Karunaweera; Marcelo U Ferreira; Myatt Phone-Kyaw; Richard J Pollack; Michael Alifrangis; Rupika S Rajakaruna; Flemming Konradsen; Priyanie H Amerasinghe; Mette L Schousboe; Gawrie N L Galappaththy; Rabindra R Abeyasinghe; Daniel L Hartl; Dyann F Wirth
Geographic structure of Plasmodium vivax: microsatellite analysis of parasite populations from Sri Lanka, Myanmar, and Ethiopia.
The American journal of tropical medicine and hygiene 2010;82(2):235-42.
2010: Maurício Carneiro; Daniel L Hartl
Colloquium papers: Adaptive landscapes and protein evolution.
Proceedings of the National Academy of Sciences of the United States of America 2010;107 Suppl 1():1747-51.
2010: Luciana O Araripe; Horácio Montenegro; Bernardo Lemos; Daniel L Hartl
Fine-scale genetic mapping of a hybrid sterility factor between Drosophila simulans and D. mauritiana: the varied and elusive functions of "speciation genes".
BMC evolutionary biology 2010;10():385.
2009: Kyle M Brown; Mark A DePristo; Daniel M Weinreich; Daniel L Hartl
Temporal constraints on the incorporation of regulatory mutants in evolutionary pathways.
Molecular biology and evolution 2009;26(11):2455-62.
2009: Elena R Lozovsky; Thanat Chookajorn; Kyle M Brown; Mallika Imwong; Philip J Shaw; Sumalee Kamchonwongpaisan; Daniel E Neafsey; Daniel M Weinreich; Daniel L Hartl
Stepwise acquisition of pyrimethamine resistance in the malaria parasite.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(29):12025-30.
2009: Trevor Bedford; Daniel L Hartl
Optimization of gene expression by natural selection.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(4):1133-8.
2009: Timothy B Sackton; Rob J Kulathinal; Casey M Bergman; Aaron R Quinlan; Erik B Dopman; Mauricio Carneiro; Gabor T Marth; Daniel L Hartl; Andrew G Clark
Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster.
Genome biology and evolution 2009;1():449-65.
2009: Rebekah L Rogers; Trevor B C Bedford; Daniel L Hartl
Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster.
Genetics 2009;181(1):313-22.
2008: Bernardo Lemos; Luciana O Araripe; Pierre Fontanillas; Daniel L Hartl
Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(38):14471-6.
2008: Trevor B C Bedford; Daniel L Hartl
Overdispersion of the molecular clock: temporal variation of gene-specific substitution rates in Drosophila.
Molecular biology and evolution 2008;25(8):1631-8.
2008: John F Baines; Stanley A Sawyer; Daniel L Hartl; John Parsch
Effects of X-linkage and sex-biased gene expression on the rate of adaptive protein evolution in Drosophila.
Molecular biology and evolution 2008;25(8):1639-50.
2008: Michael Lynch; Way Sung; Krystalynne Morris; Nicole Coffey; Christian R Landry; Erik B Dopman; W Joseph Dickinson; Kazufusa Okamoto; Shilpa Kulkarni; Daniel L Hartl; W Kelley Thomas
A genome-wide view of the spectrum of spontaneous mutations in yeast.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(27):9272-7.
2008: Kyle M Brown; Christian R Landry; Daniel L Hartl; Duccio Cavalieri
Cascading transcriptional effects of a naturally occurring frameshift mutation in Saccharomyces cerevisiae.
Molecular ecology 2008;17(12):2985-97.
2008: Olukemi Amodu; Daniel L Hartl; Scott William Roy
Patterns of polymorphism in genomic regions flanking three highly polymorphic surface antigens in Plasmodium falciparum.
Molecular and biochemical parasitology 2008;159(1):1-6.
2008: Nadira D Karunaweera; Marcelo U Ferreira; Anusha Munasinghe; John W Barnwell; William E Collins; Christopher L King; Fumihiko Kawamoto; Daniel L Hartl; Dyann F Wirth
Extensive microsatellite diversity in the human malaria parasite Plasmodium vivax.
Gene 2008;410(1):105-12.
2008: Bernardo Lemos; Luciana O Araripe; Daniel L Hartl
Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences.
Science (New York, N.Y.) 2008;319(5859):91-3.
2008: Daniel E Neafsey; Stephen F Schaffner; Sarah K Volkman; Daniel Park; Philip Montgomery; Danny A Milner; Amanda Lukens; David Rosen; Rachel Daniels; Nathan Houde; Joseph F Cortese; Erin Tyndall; Casey Gates; Nicole Stange-Thomann; Ousmane Sarr; Daouda Ndiaye; Omar Ndir; Soulyemane Mboup; Marcelo U Ferreira; Sandra do Lago Moraes; Aditya P Dash; Chetan E Chitnis; Roger C Wiegand; Daniel L Hartl; Bruce W Birren; Eric S Lander; Pardis C Sabeti; Dyann F Wirth
Genome-wide SNP genotyping highlights the role of natural selection in Plasmodium falciparum population divergence.
Genome biology 2008;9(12):R171.
2007: Erik B Dopman; Daniel L Hartl
A portrait of copy-number polymorphism in Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(50):19920-5.
2007: Thanat Chookajorn; Marna S Costanzo; Daniel L Hartl; Kirk W Deitsch
Malaria: a peek at the var variorum.
Trends in parasitology 2007;23(12):563-5.
2007: Yun Tao; Luciana Araripe; Sarah B Kingan; Yeyan Ke; Hailian Xiao; Daniel L Hartl
A sex-ratio meiotic drive system in Drosophila simulans. II: an X-linked distorter.
PLoS biology 2007;5(11):e293.
2007: Yun Tao; John P Masly; Luciana Araripe; Yeyan Ke; Daniel L Hartl
A sex-ratio meiotic drive system in Drosophila simulans. I: an autosomal suppressor.
PLoS biology 2007;5(11):e292.
2007: Pierre Fontanillas; Daniel L Hartl; Max Reuter
Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin.
PLoS genetics 2007;3(11):e210.
2007: Christian R Landry; Daniel L Hartl; José M Ranz
Genome clashes in hybrids: insights from gene expression.
Heredity 2007;99(5):483-93.
2007: Mark A DePristo; Daniel L Hartl; Daniel M Weinreich
Mutational reversions during adaptive protein evolution.
Molecular biology and evolution 2007;24(8):1608-10.
2007: Christian R Landry; Bernardo Lemos; Scott A Rifkin; W J Dickinson; Daniel L Hartl
Genetic properties influencing the evolvability of gene expression.
Science (New York, N.Y.) 2007;317(5834):118-21.
2007: Stanley A Sawyer; John Parsch; Zhi Zhang; Daniel L Hartl
Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(16):6504-10.
2007: Marcelo U Ferreira; Nadira D Karunaweera; Mônica da Silva Nunes; Natal S da Silva; Dyann F Wirth; Daniel L Hartl
Population structure and transmission dynamics of Plasmodium vivax in rural Amazonia.
The Journal of infectious diseases 2007;195(8):1218-26.
2007: Daniel L Hartl; Daniel J Fairbanks
Mud sticks: on the alleged falsification of Mendel's data.
Genetics 2007;175(3):975-9.
2007: Christian R Landry; Cristian I Castillo-Davis; Atsushi Ogura; Jun Liu; Daniel L Hartl
Systems-level analysis and evolution of the phototransduction network in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(9):3283-8.
2007: Sarah K Volkman; Elena R Lozovsky; Alyssa Barry; Trevor B C Bedford; Lara Bethke; Alissa Myrick; Karen P Day; Daniel L Hartl; Dyann F Wirth; Stanley A Sawyer
Genomic heterogeneity in the density of noncoding single-nucleotide and microsatellite polymorphisms in Plasmodium falciparum.
Gene 2007;387(1-2):1-6.
2007: Thanat Chookajorn; Ron Dzikowski; Matthias Frank; Felomena Li; Alisha Jiwani; Daniel L Hartl; Kirk W Deitsch
Epigenetic memory at malaria virulence genes.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(3):899-902.
2007: Sarah K Volkman; Pardis C Sabeti; David DeCaprio; Daniel E Neafsey; Stephen F Schaffner; Danny A Milner; Johanna Daily; Ousmane Sarr; Daouda Ndiaye; Omar Ndir; Souleymane MBoup; Manoj T Duraisingh; Amanda Lukens; Alan Derr; Nicole Stange-Thomann; Skye Waggoner; Robert Onofrio; Liuda Ziaugra; Evan Mauceli; Sante Gnerre; David B Jaffe; Joanne Zainoun; Roger C Wiegand; Bruce Birren; Daniel L Hartl; James E Galagan; Eric S Lander; Dyann F Wirth
A genome-wide map of diversity in Plasmodium falciparum.
Nature genetics 2007;39(1):113-9.
2006: Lara Bethke; Martine Zilversmit; Kaare Nielsen; Johanna Daily; Sarah K Volkman; Daouda Ndiaye; Elena R Lozovsky; Daniel L Hartl; Dyann F Wirth
Duplication, gene conversion, and genetic diversity in the species-specific acyl-CoA synthetase gene family of Plasmodium falciparum.
Molecular and biochemical parasitology 2006;150(1):10-24.
2006: Thanat Chookajorn; Daniel L Hartl
Position-specific polymorphism of Plasmodium falciparum Stuttering motif in a PHISTc PFI1780w.
Experimental parasitology 2006;114(2):126-8.
2006: Mark A DePristo; Martine M Zilversmit; Daniel L Hartl
On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins.
Gene 2006;378():19-30.
2006: Alyssa Barry; Aleksandra Leliwa-Sytek; Kitty Man; Jacob M Kasper; Daniel L Hartl; Karen P Day
Variable SNP density in aspartyl-protease genes of the malaria parasite Plasmodium falciparum.
Gene 2006;376(2):163-73.
2006: Rita Ponce; Daniel L Hartl
The evolution of the novel Sdic gene cluster in Drosophila melanogaster.
Gene 2006;376(2):174-83.
2006: Scott William Roy; Daniel L Hartl
Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number.
Genome research 2006;16(6):750-6.
2006: Daniel M Weinreich; Nigel F Delaney; Mark A DePristo; Daniel L Hartl
Darwinian evolution can follow only very few mutational paths to fitter proteins.
Science (New York, N.Y.) 2006;312(5770):111-4.
2006: Christian R Landry; Jeffrey Townsend; Daniel L Hartl; Duccio Cavalieri
Ecological and evolutionary genomics of Saccharomyces cerevisiae.
Molecular ecology 2006;15(3):575-91.
2006: Christian R Landry; Julia Oh; Daniel L Hartl; Duccio Cavalieri
Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes.
Gene 2006;366(2):343-51.
2005: Christian R Landry; Patricia J Wittkopp; Clifford H Taubes; José M Ranz; andrew clark; Daniel L Hartl
Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila.
Genetics 2005;171(4):1813-22.
2005: Justin P. Blumenstiel; Daniel L Hartl
Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilis.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(44):15965-70.
2005: Mark A DePristo; Daniel M Weinreich; Daniel L Hartl
Missense meanderings in sequence space: a biophysical view of protein evolution.
Nature reviews. Genetics 2005;6(9):678-87.
2005: Daniel E Neafsey; Daniel L Hartl; Matthew Berriman
Evolution of noncoding and silent coding sites in the Plasmodium falciparum and Plasmodium reichenowi genomes.
Molecular biology and evolution 2005;22(7):1621-6.
2005: Daniel E Neafsey; Daniel L Hartl
Convergent loss of an anciently duplicated, functionally divergent RH2 opsin gene in the fugu and Tetraodon pufferfish lineages.
Gene 2005;350(2):161-71.
2005: Bernardo Lemos; Brian R Bettencourt; Colin D Meiklejohn; Daniel L Hartl
Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.
Molecular biology and evolution 2005;22(5):1345-54.
2005: Bernardo Lemos; Colin D Meiklejohn; Mario Cáceres; Daniel L Hartl
Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories.
Evolution; international journal of organic evolution 2005;59(1):126-37.
2005: Rob J Kulathinal; Daniel L Hartl
The latest buzz in comparative genomics.
Genome biology 2005;6(1):201.
2004: Daniel E Neafsey; Justin P. Blumenstiel; Daniel L Hartl
Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitflies.
Molecular biology and evolution 2004;21(12):2310-8.
2004: Rob J Kulathinal; Brian R Bettencourt; Daniel L Hartl
Compensated deleterious mutations in insect genomes.
Science (New York, N.Y.) 2004;306(5701):1553-4.
2004: Bernardo Lemos; Colin D Meiklejohn; Daniel L Hartl
Regulatory evolution across the protein interaction network.
Nature genetics 2004;36(10):1059-60.
2004: Colin D Meiklejohn; Yuseob Kim; Daniel L Hartl; John Parsch
Identification of a locus under complex positive selection in Drosophila simulans by haplotype mapping and composite-likelihood estimation.
Genetics 2004;168(1):265-79.
2004: Cristian I Castillo-Davis; Daniel L Hartl; Guillaume Achaz
cis-Regulatory and protein evolution in orthologous and duplicate genes.
Genome research 2004;14(8):1530-6.
2004: Cristian I Castillo-Davis; Trevor B C Bedford; Daniel L Hartl
Accelerated rates of intron gain/loss and protein evolution in duplicate genes in human and mouse malaria parasites.
Molecular biology and evolution 2004;21(7):1422-7.
2004: Cristian I Castillo-Davis; Fyodor A Kondrashov; Daniel L Hartl; Rob J Kulathinal
The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint.
Genome research 2004;14(5):802-11.
2004: José M Ranz; Kalsang Namgyal; Greg Gibson; Daniel L Hartl
Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans.
Genome research 2004;14(3):373-9.
2004: Daniel L Hartl
The origin of malaria: mixed messages from genetic diversity.
Nature reviews. Microbiology 2004;2(1):15-22.
2003: Cristian I Castillo-Davis; Daniel L Hartl
Conservation, relocation and duplication in genome evolution.
Trends in genetics : TIG 2003;19(11):593-7.
2003: Alyssa Barry; Aleksandra Leliwa; Mehee Choi; Kaare M Nielsen; Daniel L Hartl; Karen P Day
DNA sequence artifacts and the estimation of time to the most recent common ancestor (TMRCA) of Plasmodium falciparum.
Molecular and biochemical parasitology 2003;130(2):143-7.
2003: Colin D Meiklejohn; John Parsch; José M Ranz; Daniel L Hartl
Rapid evolution of male-biased gene expression in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(17):9894-9.
2003: José M Ranz; Ana Rita Ponce; Daniel L Hartl; Dmitry I Nurminsky
Origin and evolution of a new gene expressed in the Drosophila sperm axoneme.
Genetica 2003;118(2-3):233-44.
2003: José M Ranz; Cristian I Castillo-Davis; Colin D Meiklejohn; Daniel L Hartl
Sex-dependent gene expression and evolution of the Drosophila transcriptome.
Science (New York, N.Y.) 2003;300(5626):1742-5.
2003: Jeffrey Townsend; Duccio Cavalieri; Daniel L Hartl
Population genetic variation in genome-wide gene expression.
Molecular biology and evolution 2003;20(6):955-63.
2003: Jeffrey Townsend; Kaare M Nielsen; Daniel S Fisher; Daniel L Hartl
Horizontal acquisition of divergent chromosomal DNA in bacteria: effects of mutator phenotypes.
Genetics 2003;164(1):13-21.
2003: Cristian I Castillo-Davis; Daniel L Hartl
GeneMerge--post-genomic analysis, data mining, and hypothesis testing.
Bioinformatics (Oxford, England) 2003;19(7):891-2.
2003: Kaare M Nielsen; Jacob Kasper; Mehee Choi; Trevor B C Bedford; Kurt Kristiansen; Dyann F Wirth; Sarah K Volkman; Elena R Lozovsky; Daniel L Hartl
Gene conversion as a source of nucleotide diversity in Plasmodium falciparum.
Molecular biology and evolution 2003;20(5):726-34.
2003: Carlos Bustamante; Rasmus Nielsen; Daniel L Hartl
Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism data.
Theoretical population biology 2003;63(2):91-103.
2003: Sarah K Volkman; Daniel L Hartl
Parasitology. A game of cat and mouth.
Science (New York, N.Y.) 2003;299(5605):353-4.
2003: Duccio Cavalieri; Patrick E McGovern; Daniel L Hartl; Robert Mortimer; Mario Polsinelli
Evidence for S. cerevisiae fermentation in ancient wine.
Journal of molecular evolution 2003;57 Suppl 1():S226-32.
2003: Stanley A Sawyer; Rob J Kulathinal; Carlos Bustamante; Daniel L Hartl
Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection.
Journal of molecular evolution 2003;57 Suppl 1():S154-64.
2003: Elizabeth A Winzeler; Cristian I Castillo-Davis; Guy Oshiro; David Liang; Daniel R Richards; Yingyao Zhou; Daniel L Hartl
Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays.
Genetics 2003;163(1):79-89.
2002: Justin P. Blumenstiel; Daniel L Hartl; Elena R Lozovsky
Patterns of insertion and deletion in contrasting chromatin domains.
Molecular biology and evolution 2002;19(12):2211-25.
2002: Sarah K Volkman; Daniel L Hartl; Dyann F Wirth; Kaare M Nielsen; Mehee Choi; Serge Batalov; Yingyao Zhou; David Plouffe; Karine G Le Roch; Ruben Abagyan; Elizabeth A Winzeler
Excess polymorphisms in genes for membrane proteins in Plasmodium falciparum.
Science (New York, N.Y.) 2002;298(5591):216-8.
2002: Cristian I Castillo-Davis; Sergei L Mekhedov; Daniel L Hartl; Eugene V Koonin; Fyodor A Kondrashov
Selection for short introns in highly expressed genes.
Nature genetics 2002;31(4):415-8.
2002: Paul Grosu; Jeffrey Townsend; Daniel L Hartl; Duccio Cavalieri
Pathway Processor: a tool for integrating whole-genome expression results into metabolic networks.
Genome research 2002;12(7):1121-6.
2002: Daniel L Hartl; Sarah K Volkman; Kaare M Nielsen; Alyssa Barry; Karen P Day; Dyann F Wirth; Elizabeth A Winzeler
The paradoxical population genetics of Plasmodium falciparum.
Trends in parasitology 2002;18(6):266-72.
2002: Cristian I Castillo-Davis; Daniel L Hartl
Genome evolution and developmental constraint in Caenorhabditis elegans.
Molecular biology and evolution 2002;19(5):728-35.
2002: Carlos Bustamante; Rasmus Nielsen; Stanley A Sawyer; Kenneth M Olsen; Michael D Purugganan; Daniel L Hartl
The cost of inbreeding in Arabidopsis.
Nature 2002;416(6880):531-4.
2002: Elena R Lozovsky; Dmitry I Nurminsky; Ernst A Wimmer; Daniel L Hartl
Unexpected stability of mariner transgenes in Drosophila.
Genetics 2002;160(2):527-35.
2002: Allan R Lohe; Daniel L Hartl
Efficient mobilization of mariner in vivo requires multiple internal sequences.
Genetics 2002;160(2):519-26.
2002: Jeffrey Townsend; Daniel L Hartl
Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments.
Genome biology 2002;3(12):RESEARCH0071.
2002: Carlos Bustamante; Rasmus Nielsen; Daniel L Hartl
A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents.
Molecular biology and evolution 2002;19(1):110-7.
2001: Carlos Bustamante; John Wakeley; S Sawyer; Daniel L Hartl
Directional selection and the site-frequency spectrum.
Genetics 2001;159(4):1779-88.
2001: John Parsch; Colin D Meiklejohn; Daniel L Hartl
Patterns of DNA sequence variation suggest the recent action of positive selection in the janus-ocnus region of Drosophila simulans.
Genetics 2001;159(2):647-57.
2001: Sarah K Volkman; Alyssa Barry; E J Lyons; Kaare M Nielsen; Susan M Thomas; Mehee Choi; S S Thakore; Karen P Day; Dyann F Wirth; Daniel L Hartl
Recent origin of Plasmodium falciparum from a single progenitor.
Science (New York, N.Y.) 2001;293(5529):482-4.
2001: John Parsch; Colin D Meiklejohn; E Hauschteck-Jungen; Peter Hunziker; Daniel L Hartl
Molecular evolution of the ocnus and janus genes in the Drosophila melanogaster species subgroup.
Molecular biology and evolution 2001;18(5):801-11.
2000: Daniel L Hartl
Molecular melodies in high and low C.
Nature reviews. Genetics 2000;1(2):145-9.
2000: Duccio Cavalieri; Jeffrey Townsend; Daniel L Hartl
Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(22):12369-74.
2000: John Parsch; J A Russell; I Beerman; Daniel L Hartl; Wolfgang Stephan
Deletion of a conserved regulatory element in the Drosophila Adh gene leads to increased alcohol dehydrogenase activity but also delays development.
Genetics 2000;156(1):219-27.
2000: Dmitri Petrov; Daniel L Hartl
Pseudogene evolution and natural selection for a compact genome.
The Journal of heredity 2000;91(3):221-7.
2000: Carlos Bustamante; Jeffrey Townsend; Daniel L Hartl
Solvent accessibility and purifying selection within proteins of Escherichia coli and Salmonella enterica.
Molecular biology and evolution 2000;17(2):301-8.
2000: Allan R Lohe; C Timmons; I Beerman; ER Lozovskaya; Daniel L Hartl
Self-inflicted wounds, template-directed gap repair and a recombination hotspot. Effects of the mariner transposase.
Genetics 2000;154(2):647-56.
2000: Jeffrey Townsend; Daniel L Hartl
The kinetics of transposable element autoregulation.
Genetica 2000;108(3):229-37.
1999: ER Lozovskaya; Dmitry I Nurminsky; Dmitri Petrov; Daniel L Hartl
Genome size as a mutation-selection-drift process.
Genes & genetic systems 1999;74(5):201-7.
1999: M L Siegal; Daniel L Hartl
Oviposition-site preference in Drosophila following interspecific gene transfer of the Alcohol dehydrogenase locus.
Behavior genetics 1999;29(3):199-204.
1999: EF Boyd; Daniel L Hartl
Analysis of the type 1 pilin gene cluster fim in Salmonella: its distinct evolutionary histories in the 5' and 3' regions.
Journal of bacteriology 1999;181(4):1301-8.
1998: M L Siegal; Daniel L Hartl
An experimental test for lineage-specific position effects on alcohol dehydrogenase (Adh) genes in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(26):15513-8.
1998: Dmitry I Nurminsky; Maria Nurminskaya; D De Aguiar; Daniel L Hartl
Selective sweep of a newly evolved sperm-specific gene in Drosophila.
Nature 1998;396(6711):572-5.
1998: Dmitry I Nurminsky; Maria Nurminskaya; Elizaveta V. Benevolenskay; Yuri Y Shevelyov; Daniel L Hartl; Vladimir A Gvozdev
Cytoplasmic dynein intermediate-chain isoforms with different targeting properties created by tissue-specific alternative splicing.
Molecular and cellular biology 1998;18(11):6816-25.
1998: EF Boyd; Daniel L Hartl
Diversifying selection governs sequence polymorphism in the major adhesin proteins fimA, papA, and sfaA of Escherichia coli.
Journal of molecular evolution 1998;47(3):258-67.
1998: EF Boyd; Daniel L Hartl
Salmonella virulence plasmid. Modular acquisition of the spv virulence region by an F-plasmid in Salmonella enterica subspecies I and insertion into the chromosome of subspecies II, IIIa, IV and VII isolates.
Genetics 1998;149(3):1183-90.
1998: Jorge Vieira; Cristina P Vieira; Daniel L Hartl; ER Lozovskaya
Factors contributing to the hybrid dysgenesis syndrome in Drosophila virilis.
Genetical research 1998;71(2):109-17.
1998: Dmitri Petrov; Daniel L Hartl
High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups.
Molecular biology and evolution 1998;15(3):293-302.
1998: EF Boyd; Daniel L Hartl
Chromosomal regions specific to pathogenic isolates of Escherichia coli have a phylogenetically clustered distribution.
Journal of bacteriology 1998;180(5):1159-65.
1998: Daniel L Hartl; C H Taubes
Towards a theory of evolutionary adaptation.
Genetica 1998;102-103(1-6):525-33.
1997: Dmitri Petrov; Daniel L Hartl
Trash DNA is what gets thrown away: high rate of DNA loss in Drosophila.
Gene 1997;205(1-2):279-89.
1997: Cristina P Vieira; Jorge Vieira; Daniel L Hartl
The evolution of small gene clusters: evidence for an independent origin of the maltase gene cluster in Drosophila virilis and Drosophila melanogaster.
Molecular biology and evolution 1997;14(10):985-93.
1997: Jorge Vieira; Cristina P Vieira; Daniel L Hartl; ER Lozovskaya
Discordant rates of chromosome evolution in the Drosophila virilis species group.
Genetics 1997;147(1):223-30.
1997: Jorge Vieira; Cristina P Vieira; Daniel L Hartl; ER Lozovskaya
A framework physical map of Drosophila virilis based on P1 clones: applications in genome evolution.
Chromosoma 1997;106(2):99-107.
1997: EF Boyd; Daniel L Hartl
Nonrandom location of IS1 elements in the genomes of natural isolates of Escherichia coli.
Molecular biology and evolution 1997;14(7):725-32.
1997: Daniel L Hartl
Mariner sails into Leishmania.
Science (New York, N.Y.) 1997;276(5319):1659-60.
1997: Daniel L Hartl; ER Lozovskaya; Dmitry I Nurminsky; Allan R Lohe
What restricts the activity of mariner-like transposable elements.
Trends in genetics : TIG 1997;13(5):197-201.
1997: EF Boyd; Daniel L Hartl
Recent horizontal transmission of plasmids between natural populations of Escherichia coli and Salmonella enterica.
Journal of bacteriology 1997;179(5):1622-7.
1997: Allan R Lohe; D De Aguiar; Daniel L Hartl
Mutations in the mariner transposase: the D,D(35)E consensus sequence is nonfunctional.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(4):1293-7.
1997: Daniel L Hartl; Allan R Lohe; ER Lozovskaya
Modern thoughts on an ancyent marinere: function, evolution, regulation.
Annual review of genetics 1997;31():337-58.
1997: Daniel L Hartl; Allan R Lohe; ER Lozovskaya
Regulation of the transposable element mariner.
Genetica 1997;100(1-3):177-84.
1996: Dmitri Petrov; ER Lozovskaya; Daniel L Hartl
High intrinsic rate of DNA loss in Drosophila.
Nature 1996;384(6607):346-9.
1996: Allan R Lohe; D T Sullivan; Daniel L Hartl
Subunit interactions in the mariner transposase.
Genetics 1996;144(3):1087-95.
1996: M L Siegal; Daniel L Hartl
Transgene Coplacement and high efficiency site-specific recombination with the Cre/loxP system in Drosophila.
Genetics 1996;144(2):715-26.
1996: Allan R Lohe; Daniel L Hartl
Reduced germline mobility of a mariner vector containing exogenous DNA: effect of size or site?
Genetics 1996;143(3):1299-306.
1996: EF Boyd; C W Hill; S M Rich; Daniel L Hartl
Mosaic structure of plasmids from natural populations of Escherichia coli.
Genetics 1996;143(3):1091-100.
1996: Allan R Lohe; Daniel L Hartl
Germline transformation of Drosophila virilis with the transposable element mariner.
Genetics 1996;143(1):365-74.
1996: Allan R Lohe; Daniel L Hartl
Autoregulation of mariner transposase activity by overproduction and dominant-negative complementation.
Molecular biology and evolution 1996;13(4):549-55.
1996: F J Ayala; J K Wetterer; J T Longino; Daniel L Hartl
Molecular phylogeny of Azteca ants (Hymenoptera:Formicidae) and the colonization of Cecropia trees.
Molecular phylogenetics and evolution 1996;5(2):423-8.
1996: Dmitry I Nurminsky; Daniel L Hartl
Sequence scanning: A method for rapid sequence acquisition from large-fragment DNA clones.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(4):1694-8.
1996: ER Lozovskaya; Dmitry I Nurminsky; Daniel L Hartl; D T Sullivan
Germline transformation of Drosophila virilis mediated by the transposable element hobo.
Genetics 1996;142(1):173-7.
1996: Daniel L Hartl; H Ochman
Inverse polymerase chain reaction.
Methods in molecular biology (Clifton, N.J.) 1996;58():293-301.
1996: Dmitry I Nurminsky; E N Moriyama; ER Lozovskaya; Daniel L Hartl
Molecular phylogeny and genome evolution in the Drosophila virilis species group: duplications of the alcohol dehydrogenase gene.
Molecular biology and evolution 1996;13(1):132-49.
1995: ER Lozovskaya; Daniel L Hartl; Dmitri Petrov
Genomic regulation of transposable elements in Drosophila.
Current opinion in genetics & development 1995;5(6):768-73.
1995: Dmitri Petrov; Jennifer L. Schutzman; Daniel L Hartl; ER Lozovskaya
Diverse transposable elements are mobilized in hybrid dysgenesis in Drosophila virilis.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(17):8050-4.
1995: Allan R Lohe; D A Lidholm; Daniel L Hartl
Genotypic effects, maternal effects and grand-maternal effects of immobilized derivatives of the transposable element mariner.
Genetics 1995;140(1):183-92.
1995: Allan R Lohe; E N Moriyama; D A Lidholm; Daniel L Hartl
Horizontal transmission, vertical inactivation, and stochastic loss of mariner-like transposable elements.
Molecular biology and evolution 1995;12(1):62-72.
1994: Daniel L Hartl; E N Moriyama; S A Sawyer
Selection intensity for codon bias.
Genetics 1994;138(1):227-34.
1994: F J Ayala; D E Krane; Daniel L Hartl
Genetic variation in IncI1-ColIb plasmids.
Journal of molecular evolution 1994;39(2):129-33.
1994: Daniel L Hartl; Dmitry I Nurminsky; R W Jones; ER Lozovskaya
Genome structure and evolution in Drosophila: applications of the framework P1 map.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(15):6824-9.
1994: J P Carulli; D M Chen; William S Stark; Daniel L Hartl
Phylogeny and physiology of Drosophila opsins.
Journal of molecular evolution 1994;38(3):250-62.
1994: Daniel L Hartl; ER Lozovskaya
Genome evolution: between the nucleosome and the chromosome.
EXS 1994;69():579-92.
1994: Daniel L Hartl; Howard Ochman
Inverse polymerase chain reaction.
Methods in molecular biology (Clifton, N.J.) 1994;31():187-96.
1993: F J Ayala; Daniel L Hartl
Molecular drift of the bride of sevenless (boss) gene in Drosophila.
Molecular biology and evolution 1993;10(5):1030-40.
1993: Dmitry I Nurminsky; Daniel L Hartl
Amplification of the ends of DNA fragments cloned in bacteriophage P1.
BioTechniques 1993;15(2):201-2, 206-8.
1993: D A Lidholm; Allan R Lohe; Daniel L Hartl
The transposable element mariner mediates germline transformation in Drosophila melanogaster.
Genetics 1993;134(3):859-68.
1993: E N Moriyama; Daniel L Hartl
Codon usage bias and base composition of nuclear genes in Drosophila.
Genetics 1993;134(3):847-58.
1993: J P Carulli; D E Krane; Daniel L Hartl; Howard Ochman
Compositional heterogeneity and patterns of molecular evolution in the Drosophila genome.
Genetics 1993;134(3):837-45.
1993: ER Lozovskaya; Dmitri Petrov; Daniel L Hartl
A combined molecular and cytogenetic approach to genome evolution in Drosophila using large-fragment DNA cloning.
Chromosoma 1993;102(4):253-66.
1993: Jeffrey G Lawrence; Daniel L Hartl; Howard Ochman
Sequencing products of polymerase chain reaction.
Methods in enzymology 1993;218():26-35.
1993: F J Ayala; B S Chang; Daniel L Hartl
Molecular evolution of the Rh3 gene in Drosophila.
Genetica 1993;92(1):23-32.
1992: ON Danilevskaya; Dmitri Petrov; M N Pavlova; A Koga; Elena Kurenova; Daniel L Hartl
A repetitive DNA element, associated with telomeric sequences in Drosophila melanogaster, contains open reading frames.
Chromosoma 1992;102(1):32-40.
1992: D E Krane; R W Allen; S A Sawyer; Dmitri Petrov; Daniel L Hartl
Genetic differences at four DNA typing loci in Finnish, Italian, and mixed Caucasian populations.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(22):10583-7.
1992: Daniel L Hartl; ER Lozovskaya
The Drosophila genome project: current status of the physical map.
Comparative biochemistry and physiology. B, Comparative biochemistry 1992;103(1):1-8.
1992: J P Carulli; Daniel L Hartl
Variable rates of evolution among Drosophila opsin genes.
Genetics 1992;132(1):193-204.
1992: Jeffrey G Lawrence; Daniel L Hartl
Inference of horizontal genetic transfer from molecular data: an approach using the bootstrap.
Genetics 1992;131(3):753-60.
1992: Daniel L Hartl; V Orel
What did Gregor Mendel think he discovered?
Genetics 1992;131(2):245-53.
1992: Jeffrey G Lawrence; Howard Ochman; Daniel L Hartl
The evolution of insertion sequences within enteric bacteria.
Genetics 1992;131(1):9-20.
1992: P Capy; A Koga; J R David; Daniel L Hartl
Sequence analysis of active mariner elements in natural populations of Drosophila simulans.
Genetics 1992;130(3):499-506.
1992: Daniel L Hartl; J W Ajioka; H Cai; Allan R Lohe; ER Lozovskaya; D A Smoller; I W Duncan
Towards a Drosophila genome map.
Trends in genetics : TIG 1992;8(2):70-5.
1992: Daniel L Hartl; ER Lozovskaya; Jeffrey G Lawrence
Nonautonomous transposable elements in prokaryotes and eukaryotes.
Genetica 1992;86(1-3):47-53.
1991: K Maruyama; Daniel L Hartl
Evidence for interspecific transfer of the transposable element mariner between Drosophila and Zaprionus.
Journal of molecular evolution 1991;33(6):514-24.
1991: P Capy; K Maruyama; J R David; Daniel L Hartl
Insertion sites of the transposable element mariner are fixed in the genome of Drosophila sechellia.
Journal of molecular evolution 1991;33(5):450-6.
1991: D E Krane; Daniel L Hartl; Howard Ochman
Rapid determination of nucleotide content and its application to the study of genome structure.
Nucleic acids research 1991;19(19):5181-5.
1991: M J Palazzolo; S A Sawyer; C H Martin; D A Smoller; Daniel L Hartl
Optimized strategies for sequence-tagged-site selection in genome mapping.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(18):8034-8.
1991: J W Ajioka; D A Smoller; R W Jones; J P Carulli; A E Vellek; D Garza; A J Link; I W Duncan; Daniel L Hartl
Drosophila genome project: one-hit coverage in yeast artificial chromosomes.
Chromosoma 1991;100(8):495-509.
1991: D A Smoller; D Petrov; Daniel L Hartl
Characterization of bacteriophage P1 library containing inserts of Drosophila DNA of 75-100 kilobase pairs.
Chromosoma 1991;100(8):487-94.
1991: Jeffrey G Lawrence; Daniel L Hartl; Howard Ochman
Molecular considerations in the evolution of bacterial genes.
Journal of molecular evolution 1991;33(3):241-50.
1991: Jeffrey G Lawrence; Howard Ochman; Daniel L Hartl
Molecular and evolutionary relationships among enteric bacteria.
Journal of general microbiology 1991;137(8):1911-21.
1991: K Maruyama; K D Schoor; Daniel L Hartl
Identification of nucleotide substitutions necessary for trans-activation of mariner transposable elements in Drosophila: analysis of naturally occurring elements.
Genetics 1991;128(4):777-84.
1991: K Maruyama; Daniel L Hartl
Evolution of the transposable element mariner in Drosophila species.
Genetics 1991;128(2):319-29.
1991: M Medhora; K Maruyama; Daniel L Hartl
Molecular and functional analysis of the mariner mutator element Mos1 in Drosophila.
Genetics 1991;128(2):311-8.
1991: D Garza; M Medhora; A Koga; Daniel L Hartl
Introduction of the transposable element mariner into the germline of Drosophila melanogaster.
Genetics 1991;128(2):303-10.
1991: ON Danilevskaya; Elena Kurenova; M N Pavlova; D V Bebehov; A J Link; A Koga; A Vellek; Daniel L Hartl
He-T family DNA sequences in the Y chromosome of Drosophila melanogaster share homology with the X-linked stellate genes.
Chromosoma 1991;100(2):118-24.
1991: Jeffrey G Lawrence; Daniel L Hartl
Unusual codon bias occurring within insertion sequences in Escherichia coli.
Genetica 1991;84(1):23-9.
1990: D Garza; M M Medhora; Daniel L Hartl
Drosophila nonsense suppressors: functional analysis in Saccharomyces cerevisiae, Drosophila tissue culture cells and Drosophila melanogaster.
Genetics 1990;126(3):625-37.
1990: R F DuBose; Daniel L Hartl
The molecular evolution of bacterial alkaline phosphatase: correlating variation among enteric bacteria to experimental manipulations of the protein.
Molecular biology and evolution 1990;7(6):547-77.
1990: H Ochman; J W Ajioka; D Garza; Daniel L Hartl
Inverse polymerase chain reaction.
Bio/technology (Nature Publishing Company) 1990;8(8):759-60.
1990: G Bryan; D Garza; Daniel L Hartl
Insertion and excision of the transposable element mariner in Drosophila.
Genetics 1990;125(1):103-14.
1989: R F DuBose; Daniel L Hartl
An experimental approach to testing modular evolution: directed replacement of alpha-helices in a bacterial protein.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(24):9966-70.
1989: D Garza; J W Ajioka; David T Burke; Daniel L Hartl
Mapping the Drosophila genome with yeast artificial chromosomes.
Science (New York, N.Y.) 1989;246(4930):641-6.
1989: Daniel L Hartl
Evolving theories of enzyme evolution.
Genetics 1989;122(1):1-6.
1989: B G Hall; L L Parker; P W Betts; R F DuBose; S A Sawyer; Daniel L Hartl
IS103, a new insertion element in Escherichia coli: characterization and distribution in natural populations.
Genetics 1989;121(3):423-31.
1989: Daniel L Hartl
The physiology of weak selection.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1989;31(1):183-9.
1989: Jeffrey G Lawrence; D E Dykhuizen; R F DuBose; Daniel L Hartl
Phylogenetic analysis using insertion sequence fingerprinting in Escherichia coli.
Molecular biology and evolution 1989;6(1):1-14.
1988: Howard Ochman; A S Gerber; Daniel L Hartl
Genetic applications of an inverse polymerase chain reaction.
Genetics 1988;120(3):621-3.
1988: R D Miller; D E Dykhuizen; Daniel L Hartl
Fitness effects of a deletion mutation increasing transcription of the 6-phosphogluconate dehydrogenase gene in Escherichia coli.
Molecular biology and evolution 1988;5(6):691-703.
1988: A M Dean; D E Dykhuizen; Daniel L Hartl
Fitness effects of amino acid replacements in the beta-galactosidase of Escherichia coli.
Molecular biology and evolution 1988;5(5):469-85.
1988: R F DuBose; D E Dykhuizen; Daniel L Hartl
Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(18):7036-40.
1988: M M Medhora; A H MacPeek; Daniel L Hartl
Excision of the Drosophila transposable element mariner: identification and characterization of the Mos factor.
The EMBO journal 1988;7(7):2185-9.
1988: G J Bryan; Daniel L Hartl
Maternally inherited transposon excision in Drosophila simulans.
Science (New York, N.Y.) 1988;240(4849):215-7.
1988: Daniel L Hartl; S A Sawyer
Why do unrelated insertion sequences occur together in the genome of Escherichia coli?
Genetics 1988;118(3):537-41.
1987: S A Sawyer; D E Dykhuizen; Daniel L Hartl
Confidence interval for the number of selectively neutral amino acid polymorphisms.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(17):6225-8.
1987: D E Dykhuizen; A M Dean; Daniel L Hartl
Metabolic flux and fitness.
Genetics 1987;115(1):25-31.
1987: S A Sawyer; D E Dykhuizen; R F DuBose; L Green; T Mutangadura-Mhlanga; D F Wolczyk; Daniel L Hartl
Distribution and abundance of insertion sequences among natural isolates of Escherichia coli.
Genetics 1987;115(1):51-63.
1986: A M Dean; D E Dykhuizen; Daniel L Hartl
Fitness as a function of beta-galactosidase activity in Escherichia coli.
Genetical research 1986;48(1):1-8.
1985: Daniel L Hartl; D E Dykhuizen; A M Dean
Limits of adaptation: the evolution of selective neutrality.
Genetics 1985;111(3):655-74.
1985: D E Dykhuizen; S A Sawyer; L Green; R D Miller; Daniel L Hartl
Joint distribution of insertion elements IS4 and IS5 in natural isolates of Escherichia coli.
Genetics 1985;111(2):219-31.
1984: D E Dykhuizen; J de Framond; Daniel L Hartl
Potential for hitchhiking in the eda-edd-zwf gene cluster of Escherichia coli.
Genetical research 1984;43(3):229-39.
1984: D E Dykhuizen; J de Framond; Daniel L Hartl
Selective neutrality of glucose-6-phosphate dehydrogenase allozymes in Escherichia coli.
Molecular biology and evolution 1984;1(2):162-70.
1983: Daniel L Hartl; D E Dykhuizen; R D Miller; L Green; J de Framond
Transposable element IS50 improves growth rate of E. coli cells without transposition.
Cell 1983;35(2 Pt 1):503-10.
1983: D S Haymer; Daniel L Hartl
The Experimental Assessment of Fitness in Drosophila. II. a Comparison of Competitive and Noncompetitive Measures.
Genetics 1983;104(2):343-52.
1982: D S Haymer; Daniel L Hartl
The experimental assessment of fitness in Drosophila. I. Comparative measures of competitive reproductive success.
Genetics 1982;102(3):455-66.