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Wesley Hatfield

Research Profile

Living Beings

Escherichia coli

Chemicals & Drugs

Genes & Molecular Sequences

Physiology

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Christopher D Wassman; Özlem Demir; Roberta Baronio; Chiung-Kuang Chen; Benjamin P Chung; Linda V Hall; G Wesley Hatfield; Peter Kaiser; Richard H Lathrop; Da-Wei Lin; Hartmut Luecke; A Richard Chamberlin; Faezeh Salehi; Brad D Wallentine; Rommie E Amaro
Computational identification of a transiently open L1/S3 pocket for reactivation of mutant p53.
Özlem Demir; Roberta Baronio; Richard Chamberlin; Linda Hall; G Wesley Hatfield; Peter Kaiser; Richard H Lathrop; Faezeh Salehi; Christopher D Wassman; Rommie E Amaro
Ensemble-based computational approach discriminates functional activity of p53 cancer and rescue mutants.
Fang Fang; Kirsty Salmon; Michael W Y Shen; Kimberly A Aeling; Elaine Ito; Becky Irwin; Uyen Phuong C Tran; G Wesley Hatfield; Nancy A Da Silva; Suzanne Sandmeyer
A vector set for systematic metabolic engineering in Saccharomyces cerevisiae.

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All Publications

2013: Christopher D Wassman; Özlem Demir; Roberta Baronio; Chiung-Kuang Chen; Benjamin P Chung; Linda V Hall; G Wesley Hatfield; Peter Kaiser; Richard H Lathrop; Da-Wei Lin; Hartmut Luecke; A Richard Chamberlin; Faezeh Salehi; Brad D Wallentine; Rommie E Amaro
Computational identification of a transiently open L1/S3 pocket for reactivation of mutant p53.
Nature communications 2013;4():1407.
2011: Özlem Demir; Roberta Baronio; Richard Chamberlin; Linda Hall; G Wesley Hatfield; Peter Kaiser; Richard H Lathrop; Faezeh Salehi; Christopher D Wassman; Rommie E Amaro
Ensemble-based computational approach discriminates functional activity of p53 cancer and rescue mutants.
PLoS computational biology 2011;7(10):e1002238.
2011: Fang Fang; Kirsty Salmon; Michael W Y Shen; Kimberly A Aeling; Elaine Ito; Becky Irwin; Uyen Phuong C Tran; G Wesley Hatfield; Nancy A Da Silva; Suzanne Sandmeyer
A vector set for systematic metabolic engineering in Saccharomyces cerevisiae.
Yeast (Chichester, England) 2011;28(2):123-36.
2010: Roberta Baronio; Samuel A Danziger; Linda V Hall; Kirsty Salmon; G Wesley Hatfield; Richard H Lathrop; Peter Kaiser
All-codon scanning identifies p53 cancer rescue mutations.
Nucleic acids research 2010;38(20):7079-88.
2010: Gene-Errol Ringpis; Inna Aphasizheva; Xiaorong Wang; Lan Huang; Richard H Lathrop; G Wesley Hatfield; Ruslan Aphasizhev
Mechanism of U insertion RNA editing in trypanosome mitochondria: the bimodal TUTase activity of the core complex.
Journal of molecular biology 2010;399(5):680-95.
2010: Sam Wei Polly Chan; She-Pin Hung; Senthil Kumar Raman; G Wesley Hatfield; Richard H Lathrop; Nancy A Da Silva; Szu-Wen Wang
Recombinant human collagen and biomimetic variants using a de novo gene optimized for modular assembly.
Biomacromolecules 2010;11(6):1460-9.
2010: T S Najdi; G Wesley Hatfield; Eric Mjolsness
A 'random steady-state' model for the pyruvate dehydrogenase and alpha-ketoglutarate dehydrogenase enzyme complexes.
Physical biology 2010;7():16016.
2009: Samuel A Danziger; Roberta Baronio; Lydia Ho; Linda Hall; Kirsty Salmon; G Wesley Hatfield; Peter Kaiser; Richard H Lathrop
Predicting positive p53 cancer rescue regions using Most Informative Positive (MIP) active learning.
PLoS computational biology 2009;5(9):e1000498.
2008: Liza S Z Larsen; Nadejda Beliakova-Bethell; Virginia Bilanchone; Min Zhang; Anne Lamsa; Rhonda Dasilva; G Wesley Hatfield; Kunio Nagashima; Suzanne Sandmeyer
Ty3 nucleocapsid controls localization of particle assembly.
Journal of virology 2008;82(5):2501-14.
2008: Liza S Z Larsen; Yu G Kuznetsov; Alexander McPherson; G Wesley Hatfield; Suzanne Sandmeyer
TY3 GAG3 protein forms ordered particles in Escherichia coli.
Virology 2008;370(2):223-7.
2008: Liza S Z Larsen; Christopher D Wassman; G Wesley Hatfield; Richard H Lathrop
Computationally Optimised DNA Assembly of synthetic genes.
International journal of bioinformatics research and applications 2008;4(3):324-36.
2007: Liza S Z Larsen; Min Zhang; Nadejda Beliakova-Bethell; Virginia Bilanchone; Anne Lamsa; Kunio Nagashima; Rani Najdi; Kathryn Kosaka; Vuk Kovacevic; Jianlin Cheng; Pierre Baldi; G Wesley Hatfield; Suzanne Sandmeyer
Ty3 capsid mutations reveal early and late functions of the amino-terminal domain.
Journal of virology 2007;81(13):6957-72.
2007: Mert Döşkaya; Mina Kalantari-Dehaghi; Craig M Walsh; Elzbieta Hiszczyńska-Sawicka; D Huw Davies; Philip L Felgner; Liza S Z Larsen; Richard H Lathrop; G Wesley Hatfield; Jessica R Schulz; Yüksel Gürüz; Frances Jurnak
GRA1 protein vaccine confers better immune response compared to codon-optimized GRA1 DNA vaccine.
Vaccine 2007;25(10):1824-37.
2007: G Wesley Hatfield; David A Roth
Optimizing scaleup yield for protein production: Computationally Optimized DNA Assembly (CODA) and Translation Engineering.
Biotechnology annual review 2007;13():27-42.
2007: Donald F Senear; Vira Tretyachenko-Ladokhina; Michael L Opel; Kimberly A Aeling; G Wesley Hatfield; Laurie M Franklin; Reuben C Darlington; J B Alexander Ross
Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface.
Nucleic acids research 2007;35(6):1761-72.
2007: Kimberly A Aeling; Nicholas R Steffen; Matthew Johnson; G Wesley Hatfield; Richard H Lathrop; Donald F Senear
DNA deformation energy as an indirect recognition mechanism in protein-DNA interactions.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2007;4(1):117-25.
2006: Kimberly A Aeling; Michael L Opel; Nicholas R Steffen; Vira Tretyachenko-Ladokhina; G Wesley Hatfield; Richard H Lathrop; Donald F Senear
Indirect recognition in sequence-specific DNA binding by Escherichia coli integration host factor: the role of DNA deformation energy.
The Journal of biological chemistry 2006;281(51):39236-48.
2006: Christian Tagwerker; Hongwei Zhang; Xiaorong Wang; Liza S Z Larsen; Richard H Lathrop; G Wesley Hatfield; Bernhard Auer; Lan Huang; Peter Kaiser
HB tag modules for PCR-based gene tagging and tandem affinity purification in Saccharomyces cerevisiae.
Yeast (Chichester, England) 2006;23(8):623-32.
2006: Tarek S Najdi; Chin-Rang Yang; Bruce E Shapiro; G Wesley Hatfield; Eric Mjolsness
Application of a generalized MWC model for the mathematical simulation of metabolic pathways regulated by allosteric enzymes.
Journal of bioinformatics and computational biology 2006;4(2):335-55.
2005: Kirsty Salmon; She-Pin Hung; Nicholas R Steffen; Rebecca Krupp; Pierre Baldi; G Wesley Hatfield; Robert P Gunsalus
Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA.
The Journal of biological chemistry 2005;280(15):15084-96.
2005: Chin-Rang Yang; Bruce E Shapiro; She-Pin Hung; Eric Mjolsness; G Wesley Hatfield
A mathematical model for the branched chain amino acid biosynthetic pathways of Escherichia coli K12.
The Journal of biological chemistry 2005;280(12):11224-32.
2005: Chin-Rang Yang; Bruce E Shapiro; Eric Mjolsness; G Wesley Hatfield
An enzyme mechanism language for the mathematical modeling of metabolic pathways.
Bioinformatics (Oxford, England) 2005;21(6):774-80.
2005: Suman Sundaresh; She-Pin Hung; G Wesley Hatfield; Pierre Baldi
How noisy and replicable are DNA microarry data?
International journal of bioinformatics research and applications 2005;1(1):31-50.
2005: Tarek S Najdi; Chin-Rang Yang; Bruce E Shapiro; G Wesley Hatfield; Eric Mjolsness
Application of a generalized MWC model for the mathematical simulation of metabolic pathways regulated by allosteric enzymes.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference 2005;():279-88.
2004: Kevin Lin; Darya Chudova; G Wesley Hatfield; Padhraic Smyth; Bogi Andersen
Identification of hair cycle-associated genes from time-course gene expression profile data by using replicate variance.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(45):15955-60.
2004: Peter H Connolly; Vincent J Caiozzo; Frank Zaldivar; Dan Nemet; Jennifer Larson; She-Pin Hung; J Denis Heck; G Wesley Hatfield; Dan M Cooper
Effects of exercise on gene expression in human peripheral blood mononuclear cells.
Journal of applied physiology (Bethesda, Md. : 1985) 2004;97(4):1461-9.
2004: Michael L Opel; Kimberly A Aeling; Walter M Holmes; Reid C Johnson; Craig J Benham; G Wesley Hatfield
Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism.
Molecular microbiology 2004;53(2):665-74.
2003: Kirsty Salmon; She-Pin Hung; Kathy Mekjian; Pierre Baldi; G Wesley Hatfield; Robert P Gunsalus
Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR.
The Journal of biological chemistry 2003;278(32):29837-55.
2003: G Wesley Hatfield; She-Pin Hung; Pierre Baldi
Differential analysis of DNA microarray gene expression data.
Molecular microbiology 2003;47(4):871-7.
2002: She-Pin Hung; Pierre Baldi; G Wesley Hatfield
Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory protein.
The Journal of biological chemistry 2002;277(43):40309-23.
2002: Nicholas R Steffen; Scott D Murphy; Richard H Lathrop; Michael L Opel; Lorenzo Tolleri; G Wesley Hatfield
The role of DNA deformation energy at individual base steps for the identification of DNA-protein binding sites.
Genome informatics. International Conference on Genome Informatics 2002;13():153-62.
2002: G Wesley Hatfield; Craig J Benham
DNA topology-mediated control of global gene expression in Escherichia coli.
Annual review of genetics 2002;36():175-203.
2002: Nicholas R Steffen; S D Murphy; Lorenzo Tolleri; G Wesley Hatfield; Richard H Lathrop
DNA sequence and structure: direct and indirect recognition in protein-DNA binding.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S22-30.
2001: Anthony D Long; H J Mangalam; B Y Chan; Lorenzo Tolleri; G Wesley Hatfield; Pierre Baldi
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12.
The Journal of biological chemistry 2001;276(23):19937-44.
2001: Steven Sheridan; Michael L Opel; G Wesley Hatfield
Activation and repression of transcription initiation by a distant DNA structural transition.
Molecular microbiology 2001;40(3):684-90.
2001: Michael L Opel; SM Arfin; G Wesley Hatfield
The effects of DNA supercoiling on the expression of operons of the ilv regulon of Escherichia coli suggest a physiological rationale for divergently transcribed operons.
Molecular microbiology 2001;39(5):1109-15.
2001: Michael L Opel; G Wesley Hatfield
DNA supercoiling-dependent transcriptional coupling between the divergently transcribed promoters of the ilvYC operon of Escherichia coli is proportional to promoter strengths and transcript lengths.
Molecular microbiology 2001;39(1):191-8.
2000: SM Arfin; Anthony D Long; E T Ito; Lorenzo Tolleri; Michelle M Riehle; E S Paegle; G Wesley Hatfield
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor.
The Journal of biological chemistry 2000;275(38):29672-84.
1999: K Y Rhee; Michael L Opel; E Ito; S p Hung; SM Arfin; G Wesley Hatfield
Transcriptional coupling between the divergent promoters of a prototypic LysR-type regulatory system, the ilvYC operon of Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(25):14294-9.
1999: Steven Sheridan; Craig J Benham; G Wesley Hatfield
Inhibition of DNA supercoiling-dependent transcriptional activation by a distant B-DNA to Z-DNA transition.
The Journal of biological chemistry 1999;274(12):8169-74.
1998: Steven Sheridan; Craig J Benham; G Wesley Hatfield
Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequence.
The Journal of biological chemistry 1998;273(33):21298-308.
1998: K Y Rhee; Donald F Senear; G Wesley Hatfield
Activation of gene expression by a ligand-induced conformational change of a protein-DNA complex.
The Journal of biological chemistry 1998;273(18):11257-66.
1997: B S Parekh; G Wesley Hatfield
Growth rate-related regulation of the ilvGMEDA operon of Escherichia coli K-12 is a consequence of the polar frameshift mutation in the ilvG gene of this strain.
Journal of bacteriology 1997;179(6):2086-8.
1996: K Y Rhee; B S Parekh; G Wesley Hatfield
Leucine-responsive regulatory protein-DNA interactions in the leader region of the ilvGMEDA operon of Escherichia coli.
The Journal of biological chemistry 1996;271(43):26499-507.
1996: B S Parekh; Steven Sheridan; G Wesley Hatfield
Effects of integration host factor and DNA supercoiling on transcription from the ilvPG promoter of Escherichia coli.
The Journal of biological chemistry 1996;271(34):20258-64.
1996: B S Parekh; G Wesley Hatfield
Transcriptional activation by protein-induced DNA bending: evidence for a DNA structural transmission model.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(3):1173-7.
1995: B Irwin; J D Heck; G Wesley Hatfield
Codon pair utilization biases influence translational elongation step times.
The Journal of biological chemistry 1995;270(39):22801-6.
1992: J M Pagel; J W Winkelman; C W Adams; G Wesley Hatfield
DNA topology-mediated regulation of transcription initiation from the tandem promoters of the ilvGMEDA operon of Escherichia coli.
Journal of molecular biology 1992;224(4):919-35.
1991: J M Pagel; G Wesley Hatfield
Integration host factor-mediated expression of the ilvGMEDA operon of Escherichia coli.
The Journal of biological chemistry 1991;266(3):1985-96.
1990: J W Winkelman; G Wesley Hatfield
Characterization of the integration host factor binding site in the ilvPG1 promoter region of the ilvGMEDA operon of Escherichia coli.
The Journal of biological chemistry 1990;265(17):10055-60.
1990: Janos K Lanyi; A Duschl; G Wesley Hatfield; K May; D Oesterhelt
The primary structure of a halorhodopsin from Natronobacterium pharaonis. Structural, functional and evolutionary implications for bacterial rhodopsins and halorhodopsins.
The Journal of biological chemistry 1990;265(3):1253-60.
1989: George A Gutman; G Wesley Hatfield
Nonrandom utilization of codon pairs in Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(10):3699-703.
1989: J H Sameshima; R C Wek; G Wesley Hatfield
Overlapping transcription and termination of the convergent ilvA and ilvY genes of Escherichia coli.
The Journal of biological chemistry 1989;264(2):1224-31.
1988: R C Wek; G Wesley Hatfield
Transcriptional activation at adjacent operators in the divergent-overlapping ilvY and ilvC promoters of Escherichia coli.
Journal of molecular biology 1988;203(3):643-63.
1988: J D Heck; G Wesley Hatfield
Valyl-tRNA synthetase gene of Escherichia coli K12. Primary structure and homology within a family of aminoacyl-TRNA synthetases.
The Journal of biological chemistry 1988;263(2):868-77.
1988: J D Heck; G Wesley Hatfield
Valyl-tRNA synthetase gene of Escherichia coli K12. Molecular genetic characterization.
The Journal of biological chemistry 1988;263(2):857-67.
1987: R C Wek; J H Sameshima; G Wesley Hatfield
Rho-dependent transcriptional polarity in the ilvGMEDA operon of wild-type Escherichia coli K12.
The Journal of biological chemistry 1987;262(31):15256-61.
1987: R P Lawther; R C Wek; John M Lopes; R Pereira; bruce taillon; G Wesley Hatfield
The complete nucleotide sequence of the ilvGMEDA operon of Escherichia coli K-12.
Nucleic acids research 1987;15(5):2137-55.
1986: R C Wek; G Wesley Hatfield
Examination of the internal promoter, PE, in the ilvGMEDA operon of E. coli K-12.
Nucleic acids research 1986;14(6):2763-77.
1986: R C Wek; G Wesley Hatfield
Nucleotide sequence and in vivo expression of the ilvY and ilvC genes in Escherichia coli K12. Transcription from divergent overlapping promoters.
The Journal of biological chemistry 1986;261(5):2441-50.
1985: C W Adams; M Rosenberg; G Wesley Hatfield
Analysis of in vivo RNA transcription products of the ilvGEDA attenuator region of Escherichia coli K12.
The Journal of biological chemistry 1985;260(14):8538-44.
1985: R C Wek; C A Hauser; G Wesley Hatfield
The nucleotide sequence of the ilvBN operon of Escherichia coli: sequence homologies of the acetohydroxy acid synthase isozymes.
Nucleic acids research 1985;13(11):3995-4010.
1985: C A Hauser; J A Sharp; L K Hatfield; G Wesley Hatfield
Pausing of RNA polymerase during in vitro transcription through the ilvB and ilvGEDA attenuator regions of Escherichia coli K12.
The Journal of biological chemistry 1985;260(3):1765-70.
1984: C W Adams; G Wesley Hatfield
Effects of promoter strengths and growth conditions on copy number of transcription-fusion vectors.
The Journal of biological chemistry 1984;259(12):7399-403.
1984: C A Hauser; G Wesley Hatfield
Attenuation of the ilvB operon by amino acids reflecting substrates or products of the ilvB gene product.
Proceedings of the National Academy of Sciences of the United States of America 1984;81(1):76-9.
1983: C A Hauser; G Wesley Hatfield
Nucleotide sequence of the ilvB multivalent attenuator region of Escherichia coli K12.
Nucleic acids research 1983;11(1):127-39.
1982: R P Lawther; D H Calhoun; J Gray; C W Adams; C A Hauser; G Wesley Hatfield
DNA sequence fine-structure analysis of ilvG (IlvG+) mutations of Escherichia coli K-12.
Journal of bacteriology 1982;149(1):294-8.
1981: R P Lawther; D H Calhoun; C W Adams; C A Hauser; J Gray; G Wesley Hatfield
Molecular basis of valine resistance in Escherichia coli K-12.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(2):922-5.
1980: J S Gantt; C S Chiang; G Wesley Hatfield; S M Arfin
Chinese hamster ovary cells resistant to beta-aspartylhydroxamate contain increased levels of asparagine synthetase.
The Journal of biological chemistry 1980;255(10):4808-13.
1980: R P Lawther; G Wesley Hatfield
Multivalent translational control of transcription termination at attenuator of ilvGEDA operon of Escherichia coli K-12.
Proceedings of the National Academy of Sciences of the United States of America 1980;77(4):1862-6.