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Yoshihide Hayashizaki

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Kenta Yoshida; Junichi Takano; Yoshihide Hayashizaki; Ichiro Ieiri; Yuri Ishizu; Alexander Lezhava; Kazuya Maeda; Yuichi Sugiyama
Direct and rapid genotyping of SLCO1B1 388A>G and 521T>C in human blood specimens using the SmartAmp-2 method.
Ryota Hasegawa; Yoshihide Hayashizaki; Harukazu Suzuki; Yasuhiro Tomaru; Michiel de Hoon; Jay W Shin
Identification of ZNF395 as a novel modulator of adipogenesis.
Yoshiko Maida; Yoshihide Hayashizaki; Satoru Kyo; Timo Lassmann; Kenkichi Masutomi
Off-Target Effect of Endogenous siRNA Derived from RMRP in Human Cells.

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2013: Kenta Yoshida; Junichi Takano; Yoshihide Hayashizaki; Ichiro Ieiri; Yuri Ishizu; Alexander Lezhava; Kazuya Maeda; Yuichi Sugiyama
Direct and rapid genotyping of SLCO1B1 388A>G and 521T>C in human blood specimens using the SmartAmp-2 method.
The AAPS journal 2013;15(2):618-22.
2013: Ryota Hasegawa; Yoshihide Hayashizaki; Harukazu Suzuki; Yasuhiro Tomaru; Michiel de Hoon; Jay W Shin
Identification of ZNF395 as a novel modulator of adipogenesis.
Experimental cell research 2013;319(3):68-76.
2013: Yoshiko Maida; Yoshihide Hayashizaki; Satoru Kyo; Timo Lassmann; Kenkichi Masutomi
Off-Target Effect of Endogenous siRNA Derived from RMRP in Human Cells.
International journal of molecular sciences 2013;14(5):9305-18.
2013: Yasuaki Enokida; Takeshi Hanami; Yoshihide Hayashizaki; Toshihisa Ishikawa; Seiichi Kakegawa; Yuki Kawai; Yasumasa Kimura; Alexander Lezhava; Yohei Miyagi; Yohei Miyamae; Haruhiko Nakayama; Hiroomi Ogawa; Yasuko Okano; Kimihiro Shimizu; Takahiro Soma; Yuki Tanaka; Kengo Usui; Jun Atsumi; Izumi Takeyoshi
Rapid Detection of SNP (c.309T>G) in the MDM2 Gene by the Duplex SmartAmp Method.
PloS one 2013;8(4):e60151.
2012: Jay W Shin; Takahiro Suzuki; Haruka Yabukami; Yuki Hasegawa; Yoshihide Hayashizaki; Mami Kishima; Atsutaka Kubosaki; Noriko Ninomiya; Harukazu Suzuki
Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming.
Nucleic acids research 2012;40(21):e165.
2012: Atsutaka Kubosaki; Jay W Shin; Christophe Simon; Yoshinari Ando; Erina Furuhata; Ryota Hasegawa; Yoshihide Hayashizaki; Takahiro Suzuki; Yasuhiro Tomaru; Harukazu Suzuki
CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication.
Biochemical and biophysical research communications 2012;426(1):141-7.
2012: Wanping Aw; Yoshihide Hayashizaki; Alexander Lezhava; Hiroshi Tanaka; Akira Andoh; Toshihisa Ishikawa
The SmartAmp method: rapid detection of SNPs in thiopurine S-methyltransferase and ABC transporters ABCC4 and ABCG2.
Current drug metabolism 2012;13(7):968-77.
2012: Yasumasa Kimura; Alexander Lezhava; Takahiro Soma; Yuki Tanaka; Michiel J L de Hoon; Takeshi Hanami; Matthias Harbers; Yoshihide Hayashizaki; Kengo Usui
Effect of thiazole orange doubly labeled thymidine on DNA duplex formation.
Biochemistry 2012;51(31):6056-67.
2012: Erik Arner; Piotr J Balwierz; Mireille Cormont; Ingrid Dahlman; Karin Dahlman-Wright; Carsten O Daub; Anna Ehrlund; Yoshihide Hayashizaki; Per Hedén; Agné Kulyté; Jurga Laurencikiene; Silvia Lorente-Cebrián; Niklas Mejhert; Mikhail Pachkov; Mikael Rydén; Jean-François Tanti; Erik van Nimwegen; Peter Arner
Adipose tissue microRNAs as regulators of CCL2 production in human obesity.
Diabetes 2012;61(8):1986-93.
2012: Kate Schroder; Colin A Semple; Harukazu Suzuki; Martin S Taylor; Altuna Akalin; John Kenneth Baillie; Nilesh J Bokil; piero carninci; Carsten O Daub; Lynsey Fairbairn; Geoffrey J Faulkner; Nick Goldman; M Milena Gongora; Sean M Grimmond; Yoshihide Hayashizaki; David A Hume; Katharine M Irvine; Ronan Kapetanovic; Hideya Kawaji; Larisa I Labzin; Kim-Anh Le Cao; Boris Lenhard; Kelly-Anne Masterman; Geoffrey J McLachlan; Matthew J Sweet
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(16):E944-53.
2012: Charles Plessy; Jessica Severin; Roberto Simone; Anne Vassalli; Christina Vlachouli; Silvia Zucchelli; Altuna Akalin; Nicolas Bertin; Claudia Carrieri; Carsten O Daub; Geoffrey J Faulkner; Stefano Gustincich; Yoshihide Hayashizaki; Jun Kawai; Dejan Lazarevic; Boris Lenhard; Peter Mombaerts; Giovanni Pascarella; piero carninci
Promoter architecture of mouse olfactory receptor genes.
Genome research 2012;22(3):486-97.
2012: Lucia Kato; Takahisa Kawaguchi; Jun Kawai; Fumihiko MATSUDA; Nasim A Begum; A Maxwell Burroughs; Carsten O Daub; Tomomitsu Doi; Yoshihide Hayashizaki; Tasuku Honjo
Nonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genes.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(7):2479-84.
2012: A Maxwell Burroughs; Carsten O Daub; Yoshinari Ando; Mitsuoki Kawano; Yoshihide Hayashizaki
pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns.
Nucleic acids research 2012;40(4):1424-37.
2012: Takeshi Hanami; Masayoshi Itoh; Rieko Oyama; Ayako Yasunishi-Koyama; Yoshihide Hayashizaki
New pyrosequencing method to analyze the function of the Klenow fragment (EXO-) for unnatural nucleic acids: pyrophosphorolysis and incorporation efficiency.
Nucleosides, nucleotides & nucleic acids 2012;31(8):608-15.
2012: Takahiro Suzuki; Haruka Yabukami-Okuda; Michiel de Hoon; Yuki Hasegawa; Yoshihide Hayashizaki; Atsutaka Kubosaki; Mika Nakano-Ikegaya; Satomi Saga-Hatano; Jessica Severin; Jay W Shin; Christophe Simon; Harukazu Suzuki
Reconstruction of monocyte transcriptional regulatory network accompanies monocytic functions in human fibroblasts.
PloS one 2012;7(3):e33474.
2012: Masayoshi Itoh; Ai Kaiho; Mutsumi Kanamori-Katayama; Hideya Kawaji; Miki Kojima; Timo Lassmann; Marina Lizio; Sayaka Nagao-Sato; Eri Saijo; piero carninci; Alistair R R Forrest; Yoshihide Hayashizaki
Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer.
PloS one 2012;7(1):e30809.
2011: Takuya Araki; Masaru Baba; Yukiyoshi Fujita; Yoshihide Hayashizaki; Kyoichi Kaira; Seiichi Kakegawa; Yuki Kawai; Alexander Lezhava; Yasumasa Mitani; Yohei Miyamae; Katsunori Nakamura; Tomonori Nakamura; Kyoko Obayashi; Kimihiro Shimizu; Izumi Takeyoshi; Tohru Aomori; Koujirou Yamamoto
Clinical screening assay for EGFR exon 19 mutations using PNA-clamp smart amplification process version 2 in lung adenocarcinoma.
Oncology reports 2011;26(5):1213-9.
2011: Oscar Franzén; Yoshihide Hayashizaki; Daniel Nilsson; Patricia Respuela; Björn Andersson; Erik Arner; Lena Aslund; piero carninci; Marcela Ferella; Carsten O Daub
The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi.
PLoS neglected tropical diseases 2011;5(8):e1283.
2011: Yuki Hasegawa; Alistair R R Forrest; Yohei Kinoshita; Jay W Shin; Harukazu Suzuki; Naoko Takahashi; Yoshihide Hayashizaki
CC chemokine ligand 2 and leukemia inhibitory factor cooperatively promote pluripotency in mouse induced pluripotent cells.
Stem cells (Dayton, Ohio) 2011;29(8):1196-205.
2011: Michael B Clark; Marcel Dinger; Mark B Gerstein; Thomas R Gingeras; Yoshihide Hayashizaki; Paulo P Amaral; piero carninci; Antonin Morillon; Kevin V Morris; Chris P Ponting; John L Rinn; Joel S Rozowsky; Felix J Schlesinger; Peter F Stadler; Ryan J Taft; Claes Wahlestedt; John S Mattick
The reality of pervasive transcription.
PLoS biology 2011;9(7):e1000625; discussion e1001102.
2011: Mutsumi Kanamori-Katayama; Shintaro Katayama; Hideya Kawaji; Miki Kojima; Timo Lassmann; Noriko Ninomiya; Nicolas Bertin; piero carninci; Carsten O Daub; Alistair R R Forrest; Masayoshi Itoh; Ai Kaiho; Yoshihide Hayashizaki
Unamplified cap analysis of gene expression on a single-molecule sequencer.
Genome research 2011;21(7):1150-9.
2011: Hirochika Makino; Kenichi Matsuo; Ryusei Matsuyama; Daisuke Morioka; Tomoyuki Morita; Youji Nagashima; Yasushi Okazaki; Hiroshi Shimada; Daisuke Shimizu; Kuniya Tanaka; Shinji Togo; Itaru Endo; Yasushi Ichikawa; Toru Kubota; Chikara Kunisaki; Yoshihide Hayashizaki
Analysis of gene expression profiles in fatal hepatic failure after hepatectomy in mice.
The Journal of surgical research 2011;169(1):36-43.
2011: Ken-Ichi Azuma; Alexander Lezhava; Makiko Shimizu; Yasumasa Kimura; Yuri Ishizu; Toshihisa Ishikawa; Tetsuya Kamataki; Yoshihide Hayashizaki; Hiroshi Yamazaki
Direct genotyping of Cytochrome P450 2A6 whole gene deletion from human blood samples by the SmartAmp method.
Clinica chimica acta; international journal of clinical chemistry 2011;412(13-14):1249-51.
2011: Yasumasa Kimura; Michiel J L de Hoon; Shintaro Aoki; Yuri Ishizu; Yuki Kawai; Yasushi Kogo; Carsten O Daub; Alexander Lezhava; Erik Arner; Yoshihide Hayashizaki
Optimization of turn-back primers in isothermal amplification.
Nucleic acids research 2011;39(9):e59.
2011: Wanping Aw; Ikuko Ota; Yu Toyoda; Alexander Lezhava; Yasuo Sakai; Tsuneaki Gomi; Yoshihide Hayashizaki; Toshihisa Ishikawa
Pharmacogenomics of human ABC transporters: detection of clinically important SNPs by SmartAmp2 method.
Current pharmaceutical biotechnology 2011;12(4):693-704.
2011: Mutsumi Kanamori-Katayama; Takumi Kishimoto; Yukio Nakamura; Yuko Okamura-Oho; Hisahiko Sekihara; Harukazu Suzuki; Masaaki Abe; Alistair R R Forrest; Okio Hino; Yuri Ishizu; Ai Kaiho; Yoshihide Hayashizaki
LRRN4 and UPK3B are markers of primary mesothelial cells.
PloS one 2011;6(10):e25391.
2011: Hisato Okuizumi; Tomoko Takamiya; Yasushi Okazaki; Yoshihide Hayashizaki
Restriction landmark genome scanning.
Methods in molecular biology (Clifton, N.J.) 2011;791():101-12.
2011: Yoshinari Ando; A Maxwell Burroughs; piero carninci; Joe Chiba; Hisashi Hirano; Yoko Ino; Hideya Kawaji; Ryuichiro Kimura; Atsutaka Kubosaki; Ayako Morinaga; Harukazu Suzuki; Maiko Tagata; Yasuhiro Tomaru; Yoshihide Hayashizaki
Nuclear pore complex protein mediated nuclear localization of dicer protein in human cells.
PloS one 2011;6(8):e23385.
2011: Yoichiro Shindo; hirohito miura; Kana Morishita; piero carninci; Yoshihide Hayashizaki; Akihiro Hino; Tomomasa Kanda; Jun Kawai; Eiichi Kotake; Yuko Kusakabe
FXYD6, a Na,K-ATPase regulator, is expressed in type II taste cells.
Bioscience, biotechnology, and biochemistry 2011;75(6):1061-6.
2011: Jean-Étienne Morlighem; Shintaro Aoki; Mami Kishima; Mitsue Hanami; Chihiro Ogawa; Amadu Jalloh; Yukari Takahashi; Yuki Kawai; Satomi Saga; Eiji Hayashi; Toshiaki Ban; Shinyu Izumi; Akira Wada; Masayuki Mano; Megumu Fukunaga; Yoshiyuki Kijima; Masashi Shiomi; Kaoru Inoue; Takeshi Hata; Yukihiro Koretsune; Koichiro Kudo; Yuji Himeno; Aizan Hirai; Kazuo Takahashi; Yuko Sakai-Tagawa; Kiyoko Iwatsuki-Horimoto; Yoshihiro Kawaoka; Yoshihide Hayashizaki; Toshihisa Ishikawa
Mutation analysis of 2009 pandemic influenza A(H1N1) viruses collected in Japan during the peak phase of the pandemic.
PloS one 2011;6(4):e18956.
2011: Yoshinari Ando; Yoshiko Maida; Ayako Morinaga; Alexander M Burroughs; Ryuichiro Kimura; Joe Chiba; Harukazu Suzuki; Kenkichi Masutomi; Yoshihide Hayashizaki
Two-step cleavage of hairpin RNA with 5' overhangs by human DICER.
BMC molecular biology 2011;12():6.
2011: A Maxwell Burroughs; Yoshinari Ando; Yasuhiro Tomaru; Harukazu Suzuki; Yoshihide Hayashizaki; Michiel Jan Laurens de Hoon; Carsten O Daub
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin.
RNA biology 2011;8(1):158-77.
2011: Timo Lassmann; Yoshihide Hayashizaki; Carsten O Daub
SAMStat: monitoring biases in next generation sequencing data.
Bioinformatics (Oxford, England) 2011;27(1):130-1.
2011: Hiroshi Masuya; Yuko Makita; Norio Kobayashi; Koro Nishikata; Yuko Yoshida; Yoshiki Mochizuki; Koji Doi; Terue Takatsuki; Kazunori Waki; Nobuhiko Tanaka; Manabu Ishii; Akihiro Matsushima; Satoshi Takahashi; Atsushi Hijikata; Kouji Kozaki; Teiichi Furuichi; Hideya Kawaji; Shigeharu Wakana; Yukio Nakamura; Atsushi Yoshiki; Takehide Murata; Kaoru Fukami-Kobayashi; Sujatha Mohan; Osamu Ohara; Yoshihide Hayashizaki; Riichiro Mizoguchi; Yuichi Obata; Tetsuro Toyoda
The RIKEN integrated database of mammals.
Nucleic acids research 2011;39(Database issue):D861-70.
2011: Hideya Kawaji; Jessica Severin; Marina Lizio; Alistair R R Forrest; Erik van Nimwegen; Michael Rehli; Kate Schroder; Katharine Irvine; Harukazu Suzuki; piero carninci; Yoshihide Hayashizaki; Carsten O Daub
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
Nucleic acids research 2011;39(Database issue):D856-60.
2011: Junpei Kurosawa; Hiromi Nishiyori; Yoshihide Hayashizaki
Deep cap analysis of gene expression.
Methods in molecular biology (Clifton, N.J.) 2011;687():147-63.
2010: Ikuko Ota; Aki Sakurai; Yu Toyoda; Satoshi Morita; Takeshi Sasaki; Takashi Chishima; Minoru Yamakado; Yuki Kawai; Takefumi Ishidao; Alexander Lezhava; Koh-ichiro Yoshiura; Shinji Togo; Yoshihide Hayashizaki; Takashi Ishikawa; Toshihisa Ishikawa; Itaru Endo; Hiroshi Shimada
Association between breast cancer risk and the wild-type allele of human ABC transporter ABCC11.
Anticancer research 2010;30(12):5189-94.
2010: Yuki Tanaka; Yasumasa Kimura; Yasumasa Mitani; Yuki Kawai; Alexander Lezhava; Shohei Noma; Michihira Tagami; Jun Kawai; Yoshihide Hayashizaki; Kengo Usui
Effects of the turn-back primer on intermediate product generation in isothermal DNA amplification.
BioTechniques 2010;49(6):888-92.
2010: T Murata; K Takayama; S Katayama; T Urano; Kuniko Horie-Inoue; K Ikeda; S Takahashi; C Kawazu; A Hasegawa; Y Ouchi; Yukio Homma; Yoshihide Hayashizaki; Satoshi Inoue
miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression.
Prostate cancer and prostatic diseases 2010;13(4):356-61.
2010: Morana Vitezic; Timo Lassmann; Alistair R R Forrest; Masanori Suzuki; Yasuhiro Tomaru; Jun Kawai; piero carninci; Harukazu Suzuki; Yoshihide Hayashizaki; Carsten O Daub
Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.
Nucleic acids research 2010;38(22):8141-8.
2010: Mitsuoki Kawano; Chika Kawazu; Marina Lizio; Hideya Kawaji; piero carninci; Harukazu Suzuki; Yoshihide Hayashizaki
Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing.
BioTechniques 2010;49(4):751-5.
2010: A Maxwell Burroughs; Yoshinari Ando; Michiel J L de Hoon; Yasuhiro Tomaru; Takahiro Nishibu; Ryo Ukekawa; Taku Funakoshi; Tsutomu Kurokawa; Harukazu Suzuki; Yoshihide Hayashizaki; Carsten O Daub
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.
Genome research 2010;20(10):1398-410.
2010: Ran Okada; Yuri Ishizu; Ryuta Endo; Alexander Lezhava; Ichiro Ieiri; Hiroyuki Kusuhara; Yuichi Sugiyama; Yoshihide Hayashizaki
Direct and rapid genotyping of glutathione-S-transferase M1 and T1 from human blood specimens using the SmartAmp2 method.
Drug metabolism and disposition: the biological fate of chemicals 2010;38(10):1636-9.
2010: Ryuichiro Kimura; Ryota Shiibashi; Masanori Suzuki; Yoshihide Hayashizaki; Joe Chiba
Enhancement of antibody response by high mobility group box protein-1-based DNA immunization.
Journal of immunological methods 2010;361(1-2):21-30.
2010: Atsutaka Kubosaki; Gabriella Lindgren; Michihira Tagami; Christophe Simon; Yasuhiro Tomaru; Hisashi Miura; Takahiro Suzuki; Erik Arner; Alistair R R Forrest; Katharine M Irvine; Kate Schroder; Yuki Hasegawa; Mutsumi Kanamori-Katayama; Michael Rehli; David A Hume; Jun Kawai; Masanori Suzuki; Harukazu Suzuki; Yoshihide Hayashizaki
The combination of gene perturbation assay and ChIP-chip reveals functional direct target genes for IRF8 in THP-1 cells.
Molecular immunology 2010;47(14):2295-302.
2010: Shannon W Davis; F Castinetti; L R Carvalho; Buffy Ellsworth; Mary Anne Potok; Robert H Lyons Jr; Michelle L Brinkmeier; Lori T Raetzman; piero carninci; A H Mortensen; Yoshihide Hayashizaki; I J P Arnhold; B B Mendonça; T Brue; Sally A Camper
Molecular mechanisms of pituitary organogenesis: In search of novel regulatory genes.
Molecular and cellular endocrinology 2010;323(1):4-19.
2010: André Fujita; Yoshihide Hayashizaki; Emi Ikeda; Seiya Imoto; Masao Nagasaki; Ayumu Saito; Teppei Shimamura; Rui Yamaguchi; Satoru Miyano
Comparison of gene expression profiles produced by cage, illumina microarray and real time rt-PCR.
Genome informatics. International Conference on Genome Informatics 2010;24(1):56-68.
2010: Charles Plessy; Nicolas Bertin; Hazuki Takahashi; Roberto Simone; Md Salimullah; Timo Lassmann; Morana Vitezic; Jessica Severin; Signe Olivarius; Dejan Lazarevic; Nadine Hornig; Valerio Orlando; Ian Bell; Hui Gao; Jacqueline Dumais; Philipp Kapranov; Huaien Wang; Carrie A Davis; Thomas Gingeras; Jun Kawai; Carsten O Daub; Yoshihide Hayashizaki; Stefano Gustincich; piero carninci
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.
Nature methods 2010;7(7):528-34.
2010: Toshihisa Ishikawa; Aki Sakurai; Hiroyuki Hirano; Alexander Lezhava; Minoru Sakurai; Yoshihide Hayashizaki
Emerging new technologies in Pharmacogenomics: rapid SNP detection, molecular dynamic simulation, and QSAR analysis methods to validate clinically important genetic variants of human ABC Transporter ABCB1 (P-gp/MDR1).
Pharmacology & therapeutics 2010;126(1):69-81.
2010: Chisei Shimono; Ri-ichiroh Manabe; Tomiko Yamada; Shiro Fukuda; Jun Kawai; Yutaka Furutani; Ko Tsutsui; Kazuhiro Ikenaka; Yoshihide Hayashizaki; Kiyotoshi Sekiguchi
Identification and characterization of nCLP2, a novel C1q family protein expressed in the central nervous system.
Journal of biochemistry 2010;147(4):565-79.
2010: Yohei Miyamae; Kimihiro Shimizu; Yasumasa Mitani; Takuya Araki; Yuki Kawai; Masaru Baba; Seiichi Kakegawa; Masayuki Sugano; Kyoichi Kaira; Alexander Lezhava; Yoshihide Hayashizaki; Koujirou Yamamoto; Izumi Takeyoshi
Mutation detection of epidermal growth factor receptor and KRAS genes using the smart amplification process version 2 from formalin-fixed, paraffin-embedded lung cancer tissue.
The Journal of molecular diagnostics : JMD 2010;12(2):257-64.
2010: Toshihisa Ishikawa; Wanping Aw; Alexander Lezhava; Yoshihide Hayashizaki
[To promise personalized medicine: development of world's fastest SNP detection method to circumvent drug-induced adverse reactions].
Arerugī = [Allergy] 2010;59(2):98-108.
2010: Alexander Lezhava; Takefumi Ishidao; Yuri Ishizu; Kana Naito; Takeshi Hanami; Atsuko Katayama; Yasushi Kogo; Takahiro Soma; Shuji Ikeda; Kayoko Murakami; Chihiro Nogawa; Masayoshi Itoh; Yasumasa Mitani; Matthias Harbers; Akimitsu Okamoto; Yoshihide Hayashizaki
Exciton Primer-mediated SNP detection in SmartAmp2 reactions.
Human mutation 2010;31(2):208-17.
2010: Michiel J L de Hoon; Ryan J Taft; Takehiro Hashimoto; Mutsumi Kanamori-Katayama; Hideya Kawaji; Mitsuoki Kawano; Mami Kishima; Timo Lassmann; Geoffrey J Faulkner; John S Mattick; Carsten O Daub; piero carninci; Jun Kawai; Harukazu Suzuki; Yoshihide Hayashizaki
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.
Genome research 2010;20(2):257-64.
2010: Alistair Forrest; Mutsumi Kanamori-Katayama; Yasuhiro Tomaru; T Lassmann; N Ninomiya; Y Takahashi; M J L de Hoon; Atsutaka Kubosaki; A Kaiho; M Suzuki; Jun Yasuda; Jun Kawai; Yoshihide Hayashizaki; D A Hume; Harukazu Suzuki
Induction of microRNAs, mir-155, mir-222, mir-424 and mir-503, promotes monocytic differentiation through combinatorial regulation.
Leukemia 2010;24(2):460-6.
2010: Charles A Steward; Sean Humphray; Bob Plumb; Matthew C Jones; Michael A Quail; Stephen Rice; Tony Cox; Rob Davies; James K Bonfield; Thomas M Keane; Michael Nefedov; Pieter J de Jong; Paul Lyons; Linda Wicker; John Todd; Yoshihide Hayashizaki; Omid Gulban; Jayne Danska; Jennifer Harrow; Tim Hubbard; Jane Rogers; David J Adams
Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes.
Genomics 2010;95(2):105-10.
2010: Ulf Schaefer; Rimantas Kodzius; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Vladimir B Bajic
High sensitivity TSS prediction: estimates of locations where TSS cannot occur.
PloS one 2010;5(11):e13934.
2010: Cecilia Castaño-Sánchez; Kanako Fuji; Akiyuki Ozaki; Osamu Hasegawa; Takashi Sakamoto; Kagayaki Morishima; Ichiro Nakayama; Atsushi Fujiwara; Tetsuji Masaoka; Hiroyuki Okamoto; Kengo Hayashida; Michihira Tagami; Jun Kawai; Yoshihide Hayashizaki; Nobuaki Okamoto
A second generation genetic linkage map of Japanese flounder (Paralichthys olivaceus).
BMC genomics 2010;11():554.
2010: Anton Kratz; Erik Arner; Rintaro Saito; Atsutaka Kubosaki; Jun Kawai; Harukazu Suzuki; piero carninci; Takahiro Arakawa; Masaru Tomita; Yoshihide Hayashizaki; Carsten O Daub
Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns.
BMC genomics 2010;11():257.
2010: Ryuichiro Kimura; Ayako Yoda; Yoshihide Hayashizaki; Joe Chiba
Novel ELISA using intracellularly biotinylated antigen for detection of antibody following DNA immunization.
Japanese journal of infectious diseases 2010;63(1):41-8.
2010: Takuya Araki; Kimihiro Shimizu; Katsunori Nakamura; Tomonori Nakamura; Yasumasa Mitani; Kyoko Obayashi; Yukiyoshi Fujita; Seiichi Kakegawa; Yohei Miyamae; Kyoichi Kaira; Takefumi Ishidao; Alexander Lezhava; Yoshihide Hayashizaki; Izumi Takeyoshi; Koujirou Yamamoto
Usefulness of peptide nucleic acid (PNA)-clamp smart amplification process version 2 (SmartAmp2) for clinical diagnosis of KRAS codon 12 mutations in lung adenocarcinoma: comparison of PNA-clamp SmartAmp2 and PCR-related methods.
The Journal of molecular diagnostics : JMD 2010;12(1):118-24.
2010: Erik Arner; Yoshihide Hayashizaki; Carsten O Daub
NGSView: an extensible open source editor for next-generation sequencing data.
Bioinformatics (Oxford, England) 2010;26(1):125-6.
2010: Fuyu Ito; Kengo Usui; Daigo Kawahara; Atsushi Suenaga; Tei Maki; Satoru Kidoaki; Harukazu Suzuki; Makoto Taiji; Masayoshi Itoh; Yoshihide Hayashizaki; Takehisa Matsuda
Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment.
Biomaterials 2010;31(1):58-66.
2009: Shigetoshi Yokoyama; Yoshiaki Ito; Hiroe Ueno-Kudoh; Hirohito Shimizu; Kenta Uchibe; Sonia Albini; Kazuhiko Mitsuoka; Shigeru Miyaki; Minako Kiso; Akane Nagai; Tomohiro Hikata; Tadahiro Osada; Noritsugu Fukuda; Satoshi Yamashita; Daisuke Harada; Valeria Mezzano; Masataka Kasai; Pier Lorenzo Puri; Yoshihide Hayashizaki; Haruo Okado; Megumi Hashimoto; Hiroshi Asahara
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Developmental cell 2009;17(6):836-48.
2009: Sylvia T Victor; Alexander Lezhava; Takefumi Ishidao; Ryuta Endo; Yasumasa Mitani; Yoshihiro Kawaoka; Yoshihide Hayashizaki
Isothermal single nucleotide polymorphism genotyping and direct PCR from whole blood using a novel whole-blood lysis buffer.
Molecular diagnosis & therapy 2009;13(6):383-7.
2009: Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Manami Sato; Makato Inoue; Satoru Watanabe; Yoshihide Hayashizaki; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
NMR solution structures of actin depolymerizing factor homology domains.
Protein science : a publication of the Protein Society 2009;18(11):2384-92.
2009: Timo Lassmann; Yoshihide Hayashizaki; Carsten O Daub
TagDust--a program to eliminate artifacts from next generation sequencing data.
Bioinformatics (Oxford, England) 2009;25(21):2839-40.
2009: Takehiro Hashimoto; Michiel J L de Hoon; Sean M Grimmond; Carsten O Daub; Yoshihide Hayashizaki; Geoffrey J Faulkner
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
Bioinformatics (Oxford, England) 2009;25(19):2613-4.
2009: Yoshiko Maida; Mami Yasukawa; Miho Furuuchi; Timo Lassmann; Richard Possemato; Naoko Okamoto; Vivi Kasim; Yoshihide Hayashizaki; William C Hahn; Kenkichi Masutomi
An RNA-dependent RNA polymerase formed by TERT and the RMRP RNA.
Nature 2009;461(7261):230-5.
2009: Yasumasa Mitani; Alexander Lezhava; Aki Sakurai; Akina Horikawa; Makoto Nagakura; Yoshihide Hayashizaki; Toshihisa Ishikawa
Rapid and cost-effective SNP detection method: application of SmartAmp2 to pharmacogenomics research.
Pharmacogenomics 2009;10(7):1187-97.
2009: Ryan J Taft; Evgeny Glazov; Timo Lassmann; Yoshihide Hayashizaki; piero carninci; John S Mattick
Small RNAs derived from snoRNAs.
RNA (New York, N.Y.) 2009;15(7):1233-40.
2009: Yasumasa Kimura; Atsuko Oguchi-Katayama; Yuki Kawai; Kana Naito; Yasumasa Mitani; Jean-Etienne Morlighem; Yoshihide Hayashizaki; Alexander Lezhava
Tail variation of the folding primer affects the SmartAmp2 process differently.
Biochemical and biophysical research communications 2009;383(4):455-9.
2009: Yu Toyoda; Aki Sakurai; Yasumasa Mitani; Masahiro Nakashima; Koh-ichiro Yoshiura; Hiroshi Nakagawa; Yasuo Sakai; Ikuko Ota; Alexander Lezhava; Yoshihide Hayashizaki; Norio Niikawa; Toshihisa Ishikawa
Earwax, osmidrosis, and breast cancer: why does one SNP (538G>A) in the human ABC transporter ABCC11 gene determine earwax type?
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2009;23(6):2001-13.
2009: Chihiro Ogawa; Kengo Usui; Fuyu Ito; Masayoshi Itoh; Yoshihide Hayashizaki; Harukazu Suzuki
Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly.
The Journal of biological chemistry 2009;284(21):14609-17.
2009: Kengo Usui; Tei Maki; Fuyu Ito; Atsushi Suenaga; Satoru Kidoaki; Masayoshi Itoh; Makoto Taiji; Takehisa Matsuda; Yoshihide Hayashizaki; Harukazu Suzuki
Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.
Protein science : a publication of the Protein Society 2009;18(5):960-9.
2009: Ryan J Taft; Evgeny Glazov; Nicole Cloonan; Cas Simons; Stuart Stephen; Geoffrey J Faulkner; Timo Lassmann; Alistair Forrest; Sean M Grimmond; Kate Schroder; Katharine M Irvine; Takahiro Arakawa; Mari Nakamura; Atsutaka Kubosaki; Kengo Hayashida; Chika Kawazu; Mitsuyoshi Murata; Hiromi Nishiyori; Shiro Fukuda; Jun Kawai; Carsten O Daub; David A Hume; Harukazu Suzuki; Valerio Orlando; piero carninci; Yoshihide Hayashizaki; John S Mattick
Tiny RNAs associated with transcription start sites in animals.
Nature genetics 2009;41(5):572-8.
2009: Geoffrey J Faulkner; Yasumasa Kimura; Carsten O Daub; Shivangi Wani; Charles Plessy; Katharine M Irvine; Kate Schroder; Nicole Cloonan; Anita L Steptoe; Timo Lassmann; Kazunori Waki; Nadine Hornig; Takahiro Arakawa; Hazuki Takahashi; Jun Kawai; Alistair Forrest; Harukazu Suzuki; Yoshihide Hayashizaki; David A Hume; Valerio Orlando; Sean M Grimmond; piero carninci
The regulated retrotransposon transcriptome of mammalian cells.
Nature genetics 2009;41(5):563-71.
2009: Michelle L Brinkmeier; Shannon W Davis; piero carninci; James W MacDonald; Jun Kawai; Debashis Ghosh; Yoshihide Hayashizaki; Robert H Lyons Jr; Sally A Camper
Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches.
Genomics 2009;93(5):449-60.
2009: Shannon W Davis; Mary Anne Potok; Michelle L Brinkmeier; piero carninci; Robert H Lyons Jr; James W MacDonald; Michelle T Fleming; Amanda H Mortensen; Noboru Egashira; Debashis Ghosh; Karen P Steel; Robert Y Osamura; Yoshihide Hayashizaki; Sally A Camper
Genetics, gene expression and bioinformatics of the pituitary gland.
Hormone research 2009;71 Suppl 2():101-15.
2009: Tohru Aomori; Koujirou Yamamoto; Atsuko Oguchi-Katayama; Yuki Kawai; Takefumi Ishidao; Yasumasa Mitani; Yasushi Kogo; Alexander Lezhava; Yukiyoshi Fujita; Kyoko Obayashi; Katsunori Nakamura; Hugo Kohnke; Mia Wadelius; Lena Ekström; Cristine Skogastierna; Anders Rane; Masahiko Kurabayashi; Masami Murakami; Paul E Cizdziel; Yoshihide Hayashizaki; Ryuya Horiuchi
Rapid single-nucleotide polymorphism detection of cytochrome P450 (CYP2C9) and vitamin K epoxide reductase (VKORC1) genes for the warfarin dose adjustment by the SMart-amplification process version 2.
Clinical chemistry 2009;55(4):804-12.
2009: Tetsuya Shimizu; Shinji Togo; Takahumi Kumamoto; Hirochika Makino; Tomoyuki Morita; Kuniya Tanaka; Toru Kubota; Yasushi Ichikawa; Youji Nagasima; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Gene expression during liver regeneration after partial hepatectomy in mice lacking type 1 tumor necrosis factor receptor.
The Journal of surgical research 2009;152(2):178-88.
2009: Yasuhiro Tomaru; Misato Nakanishi; Hisashi Miura; Yasumasa Kimura; Hiroki Ohkawa; Yusuke Ohta; Yoshihide Hayashizaki; Masanori Suzuki
Identification of an inter-transcription factor regulatory network in human hepatoma cells by Matrix RNAi.
Nucleic acids research 2009;37(4):1049-60.
2009: Hisashi Miura; Yasuhiro Tomaru; Misato Nakanishi; Shinji Kondo; Yoshihide Hayashizaki; Masanori Suzuki
Identification of DNA regions and a set of transcriptional regulatory factors involved in transcriptional regulation of several human liver-enriched transcription factor genes.
Nucleic acids research 2009;37(3):778-92.
2009: Eivind Valen; Giovanni Pascarella; Alistair Chalk; Norihiro Maeda; Miki Kojima; Chika Kawazu; Mitsuyoshi Murata; Hiromi Nishiyori; Dejan Lazarevic; Dario Motti; Troels Torben Marstrand; Man-Hung Eric Tang; Xiaobei Zhao; Anders Krogh; Ole Winther; Takahiro Arakawa; Jun Kawai; Christine Wells; Carsten Daub; Matthias Harbers; Yoshihide Hayashizaki; Stefano Gustincich; Albin Sandelin; piero carninci
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
Genome research 2009;19(2):255-65.
2009: Sebastian Schmeier; Cameron R MacPherson; Magbubah Essack; Mandeep Kaur; Ulf Schaefer; Harukazu Suzuki; Yoshihide Hayashizaki; Vladimir Bajic
Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation.
BMC genomics 2009;10():595.
2009: Yuko Saeki; Takaho Endo; Kaori Ide; Takeshi Nagashima; Noriko Yumoto; Tetsuro Toyoda; Harukazu Suzuki; Yoshihide Hayashizaki; Yoshiyuki Sakaki; Mariko Okada-Hatakeyama
Ligand-specific sequential regulation of transcription factors for differentiation of MCF-7 cells.
BMC genomics 2009;10():545.
2009: Yasuhiro Tomaru; Christophe Simon; Alistair Forrest; Hisashi Miura; Atsutaka Kubosaki; Yoshihide Hayashizaki; Masanori Suzuki
Regulatory interdependence of myeloid transcription factors revealed by Matrix RNAi analysis.
Genome biology 2009;10(11):R121.
2009: Trinh Xuan Hoat; Nicolas Bertin; Noriko Ninomiya; Shiro Fukuda; Kengo Usui; Jun Kawai; Yoshihide Hayashizaki; Harukazu Suzuki
Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential.
BMC cell biology 2009;10():69.
2009: Alexander Lezhava; Yoshihide Hayashizaki
Detection of SNP by the isothermal smart amplification method.
Methods in molecular biology (Clifton, N.J.) 2009;578():437-51.
2009: Piotr J Balwierz; piero carninci; Carsten O Daub; Jun Kawai; Yoshihide Hayashizaki; Werner Van Belle; Christian Beisel; Erik van Nimwegen
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.
Genome biology 2009;10(7):R79.
2009: Kanako Kawaura; Keiichi Mochida; Akiko Enju; Yasushi Totoki; Atsushi Toyoda; Yoshiyuki Sakaki; Chikatoshi Kai; Jun Kawai; Yoshihide Hayashizaki; Motoaki Seki; Kazuo Shinozaki; Yasunari Ogihara
Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns.
BMC genomics 2009;10():271.
2009: Hideya Kawaji; Yoshihide Hayashizaki; Carsten O Daub
SDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes.
BMC bioinformatics 2009;10():133.
2009: Atsutaka Kubosaki; Yasuhiro Tomaru; Michihira Tagami; Erik Arner; Hisashi Miura; Takahiro Suzuki; Masanori Suzuki; Harukazu Suzuki; Yoshihide Hayashizaki
Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation.
Genome biology 2009;10(4):R41.
2009: Hideya Kawaji; Jessica Severin; Marina Lizio; Andrew Waterhouse; Shintaro Katayama; Katharine M Irvine; David A Hume; Alistair Forrest; Harukazu Suzuki; piero carninci; Yoshihide Hayashizaki; Carsten O Daub
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
Genome biology 2009;10(4):R40.
2009: Jessica C Mar; Yasumasa Kimura; Kate Schroder; Katharine M Irvine; Yoshihide Hayashizaki; Harukazu Suzuki; David Hume; John Quackenbush
Data-driven normalization strategies for high-throughput quantitative RT-PCR.
BMC bioinformatics 2009;10():110.
2009: Jessica Severin; Andrew M Waterhouse; Hideya Kawaji; Timo Lassmann; Erik van Nimwegen; Piotr J Balwierz; Michiel Jl de Hoon; David A Hume; piero carninci; Yoshihide Hayashizaki; Harukazu Suzuki; Carsten O Daub; Alistair Forrest
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.
Genome biology 2009;10(4):R39.
2009: Altuna Akalin; David Fredman; Erik Arner; Xianjun Dong; Jan Christian Bryne; Harukazu Suzuki; Carsten O Daub; Yoshihide Hayashizaki; Boris Lenhard
Transcriptional features of genomic regulatory blocks.
Genome biology 2009;10(4):R38.
2009: James Fraser; Mathieu Rousseau; Solomon Shenker; Maria A Ferraiuolo; Yoshihide Hayashizaki; Mathieu Blanchette; Josée Dostie
Chromatin conformation signatures of cellular differentiation.
Genome biology 2009;10(4):R37.
2009: Motoaki Seki; Asako Kamiya; piero carninci; Yoshihide Hayashizaki; Kazuo Shinozaki
Generation of full-length cDNA libraries: focus on plants.
Methods in molecular biology (Clifton, N.J.) 2009;533():49-68.
2009: Masako Harada; Yoshihide Hayashizaki
Preparation of full-length cDNA libraries: focus on metazoans.
Methods in molecular biology (Clifton, N.J.) 2009;533():69-107.
2009: Shota Nakamura; Cheng-Song Yang; Naomi Sakon; Mayo Ueda; Takahiro Tougan; Akifumi Yamashita; Naohisa Goto; Kazuo Takahashi; Teruo Yasunaga; Kazuyoshi Ikuta; Tetsuya Mizutani; Yoshiko Okamoto; Michihira Tagami; Ryoji Morita; Norihiro Maeda; Jun Kawai; Yoshihide Hayashizaki; Yoshiyuki Nagai; Toshihiro Horii; Tetsuya Iida; T Nakaya
Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach.
PloS one 2009;4(1):e4219.
2008: Yoichiro Shindo; Hirohito Miura; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Yuzo Ninomiya; Akihiro Hino; Tomomasa Kanda; Yuko Kusakabe
G alpha14 is a candidate mediator of sweet/umami signal transduction in the posterior region of the mouse tongue.
Biochemical and biophysical research communications 2008;376(3):504-8.
2008: Shota Nakamura; Norihiro Maeda; Ionut Mihai Miron; Myonsun Yoh; Kaori Izutsu; Chidoh Kataoka; Takeshi Honda; Teruo Yasunaga; Takaaki Nakaya; Jun Kawai; Yoshihide Hayashizaki; Toshihiro Horii; Tetsuya Iida
Metagenomic diagnosis of bacterial infections.
Emerging infectious diseases 2008;14(11):1784-6.
2008: Martin Taylor; Tim Massingham; Yoshihide Hayashizaki; piero carninci; Nick Goldman; Colin A M Semple
Rapidly evolving human promoter regions.
Nature genetics 2008;40(11):1262-3; author reply 1263-4.
2008: Kenji Tatsumi; Yasumasa Mitani; Jun Watanabe; Hideki Takakura; Kanako Hoshi; Yuki Kawai; Takeshi Kikuchi; Yasushi Kogo; Atsuko Oguchi-Katayama; Yasuhiro Tomaru; Hajime Kanamori; Masaru Baba; Takefumi Ishidao; Kengo Usui; Masayoshi Itoh; Paul E Cizdziel; Alexander Lezhava; Michio Ueda; Yasushi Ichikawa; Itaru Endo; Shinji Togo; Hiroshi Shimada; Yoshihide Hayashizaki
Rapid screening assay for KRAS mutations by the modified smart amplification process.
The Journal of molecular diagnostics : JMD 2008;10(6):520-6.
2008: Hua Li; Seizo Koshiba; Fumiaki Hayashi; Naoya Tochio; Tadashi Tomizawa; Takuma Kasai; Takashi Yabuki; Yoko Motoda; Takushi Harada; Satoru Watanabe; Makoto Inoue; Yoshihide Hayashizaki; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode.
The Journal of biological chemistry 2008;283(40):27165-78.
2008: Kenichi Takayama; Kuniko Horie-Inoue; Kazuhiro Ikeda; Tomohiko Urano; Kayoko Murakami; Yoshihide Hayashizaki; Yasuyoshi Ouchi; Satoshi Inoue
FOXP1 is an androgen-responsive transcription factor that negatively regulates androgen receptor signaling in prostate cancer cells.
Biochemical and biophysical research communications 2008;374(2):388-93.
2008: Ri-ichiroh Manabe; Ko Tsutsui; Tomiko Yamada; Mina Kimura; Itsuko Nakano; Chisei Shimono; Noriko Sanzen; Yutaka Furutani; Tomohiko Fukuda; Yasuko Oguri; Keiko Shimamoto; Daiji Kiyozumi; Yuya Sato; Yoshikazu Sado; Haruki Senoo; Shohei Yamashina; Shiro Fukuda; Jun Kawai; Nobuo Sugiura; Koji Kimata; Yoshihide Hayashizaki; Kiyotoshi Sekiguchi
Transcriptome-based systematic identification of extracellular matrix proteins.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(35):12849-54.
2008: Shiro Tochitani; Yoshihide Hayashizaki
Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation.
Biochemical and biophysical research communications 2008;372(4):691-6.
2008: Takashi Nagata; Sakura Suzuki; Ryuta Endo; Mikako Shirouzu; Takaho Terada; Makoto Inoue; Takanori Kigawa; Naohiro Kobayashi; Peter Güntert; Akiko Tanaka; Yoshihide Hayashizaki; Yutaka Muto; Shigeyuki Yokoyama
The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition.
Nucleic acids research 2008;36(14):4754-67.
2008: Norihiro Maeda; Hiromi Nishiyori; Mari Nakamura; Chika Kawazu; Mitsuyoshi Murata; Hiromi Sano; Kengo Hayashida; Shiro Fukuda; Michihira Tagami; Akira Hasegawa; Kayoko Murakami; Kate Schroder; Katharine Irvine; David Hume; Yoshihide Hayashizaki; piero carninci; Harukazu Suzuki
Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.
BioTechniques 2008;45(1):95-7.
2008: Yuki Kawai; Takeshi Kikuchi; Yasumasa Mitani; Yasushi Kogo; Masayoshi Itoh; Kengo Usui; Hajime Kanamori; Ai Kaiho; Hideki Takakura; Kanako Hoshi; Paul E Cizdziel; Yoshihide Hayashizaki
Sensitive detection of EGFR mutations using a competitive probe to suppress background in the SMart Amplification Process.
Biologicals : journal of the International Association of Biological Standardization 2008;36(4):234-8.
2008: Takafumi Kumamoto; Shinji Togo; Atsushi Ishibe; Daisuke Morioka; Kazuteru Watanabe; Takuji Takahashi; Tetsuya Shimizu; Ken-ichi Matsuo; Toru Kubota; Kuniya Tanaka; Yoji Nagashima; Jun Kawai; Yoshihide Hayashizaki; Hiroshi Shimada
Role of nitric oxide synthesized by nitric oxide synthase 2 in liver regeneration.
Liver international : official journal of the International Association for the Study of the Liver 2008;28(6):865-77.
2008: Kanako Kuwasako; Mari Takahashi; Naoya Tochio; Chikage Abe; Kengo Tsuda; Makoto Inoue; Takaho Terada; Mikako Shirouzu; Naohiro Kobayashi; Takanori Kigawa; Seiichi Taguchi; Akiko Tanaka; Yoshihide Hayashizaki; Peter Güntert; Yutaka Muto; Shigeyuki Yokoyama
Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode.
Biochemistry 2008;47(24):6437-50.
2008: piero carninci; Jun Yasuda; Yoshihide Hayashizaki
Multifaceted mammalian transcriptome.
Current opinion in cell biology 2008;20(3):274-80.
2008: Misato Nakanishi; Yasuhiro Tomaru; Hisashi Miura; Yoshihide Hayashizaki; Masanori Suzuki
Identification of transcriptional regulatory cascades in retinoic acid-induced growth arrest of HepG2 cells.
Nucleic acids research 2008;36(10):3443-54.
2008: Natsue Omi; Etsuko Kiyokawa; Michiyuki Matsuda; Kazuo Kinoshita; Shuichi Yamada; Kazumi Yamada; Yoshibumi Matsushima; Yun Wang; Jun Kawai; Masanori Suzuki; Yoshihide Hayashizaki; Hiroshi Hiai
Mutation of Dock5, a member of the guanine exchange factor Dock180 superfamily, in the rupture of lens cataract mouse.
Experimental eye research 2008;86(5):828-34.
2008: Michiel de Hoon; Yoshihide Hayashizaki
Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference.
BioTechniques 2008;44(5):627-8, 630, 632.
2008: Manabu Ichikawa; Yuko Okamura-Oho; Kazuro Shimokawa; Shinji Kondo; Sakiko Nakamura; Hideo Yokota; Ryutaro Himeno; Klaus-Peter Lesch; Yoshihide Hayashizaki
Expression analysis for inverted effects of serotonin transporter inactivation.
Biochemical and biophysical research communications 2008;368(1):43-9.
2008: Geoffrey J Faulkner; Alistair Forrest; Alistair Chalk; Kate Schroder; Yoshihide Hayashizaki; piero carninci; David A Hume; Sean M Grimmond
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
Genomics 2008;91(3):281-8.
2008: Kazuro Shimokawa; Rimantas Kodzius; Yonehiro Matsumura; Yoshihide Hayashizaki
Calculation of absolute expression values for DNA microarray data.
CSH protocols 2008;2008():pdb.prot4938.
2008: Kazuro Shimokawa; Rimantas Kodzius; Yonehiro Matsumura; Yoshihide Hayashizaki
Calculation of Spot Reliability Evaluation Scores (SRED) for DNA Microarray Data.
CSH protocols 2008;2008():pdb.prot4937.
2008: Hideya Kawaji; Yoshihide Hayashizaki
Genome annotation.
Methods in molecular biology (Clifton, N.J.) 2008;452():125-39.
2008: Hideya Kawaji; Mari Nakamura; Yukari Takahashi; Albin Sandelin; Shintaro Katayama; Shiro Fukuda; Carsten O Daub; Chikatoshi Kai; Jun Kawai; Jun Yasuda; piero carninci; Yoshihide Hayashizaki
Hidden layers of human small RNAs.
BMC genomics 2008;9():157.
2008: Takahiro Suzuki; Shinji Kondo; Teruhiko Wakayama; Paul E Cizdziel; Yoshihide Hayashizaki
Genome-wide analysis of abnormal H3K9 acetylation in cloned mice.
PloS one 2008;3(4):e1905.
2008: Takeshi Nagashima; Takahiro Suzuki; Shinji Kondo; Yoko Kuroki; Kaoru Takahashi; Kaori Ide; Noriko Yumoto; Aki Hasegawa; Tetsuro Toyoda; Toshio Kojima; Akihiko Konagaya; Harukazu Suzuki; Yoshihide Hayashizaki; Yoshiyuki Sakaki; Mariko Hatakeyama
Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells.
PloS one 2008;3(3):e1803.
2008: Hideya Kawaji; Yoshihide Hayashizaki
Exploration of small RNAs.
PLoS genetics 2008;4(1):e22.
2008: Jun Yasuda; Yoshihide Hayashizaki
The RNA continent.
Advances in cancer research 2008;99():77-112.
2008: Martin C Frith; Eivind Valen; Anders Krogh; Yoshihide Hayashizaki; piero carninci; Albin Sandelin
A code for transcription initiation in mammalian genomes.
Genome research 2008;18(1):1-12.
2007: Martin C Frith; piero carninci; Chikatoshi Kai; Jun Kawai; Timothy Lawrence Bailey; Yoshihide Hayashizaki; John S Mattick
Splicing bypasses 3' end formation signals to allow complex gene architectures.
Gene 2007;403(1-2):188-93.
2007: Jun Watanabe; Yasumasa Mitani; Yuki Kawai; Takeshi Kikuchi; Yasushi Kogo; Atsuko Oguchi-Katayama; Hajime Kanamori; Kengo Usui; Masayoshi Itoh; Paul E Cizdziel; Alexander Lezhava; Kenji Tatsumi; Yasushi Ichikawa; Shinji Togo; Hiroshi Shimada; Yoshihide Hayashizaki
Use of a competitive probe in assay design for genotyping of the UGT1A1 *28 microsatellite polymorphism by the smart amplification process.
BioTechniques 2007;43(4):479-84.
2007: Yoshihide Hayashizaki
[New phase of the transcriptome analysis].
[Rinshō ketsueki] The Japanese journal of clinical hematology 2007;48(10):1277-80.
2007: Jun Kawai; piero carninci; Yoshihide Hayashizaki
Transcriptomics resources for functional genomics.
Briefings in functional genomics & proteomics 2007;6(3):171-9.
2007: Kanako Hoshi; Hideki Takakura; Yasumasa Mitani; Kenji Tatsumi; Nobuyoshi Momiyama; Yasushi Ichikawa; Shinji Togo; Toru Miyagi; Yuki Kawai; Yasushi Kogo; Takeshi Kikuchi; Chiaki Kato; Takahiro Arakawa; Syuji Uno; Paul E Cizdziel; Alexander Lezhava; Noburou Ogawa; Yoshihide Hayashizaki; Hiroshi Shimada
Rapid detection of epidermal growth factor receptor mutations in lung cancer by the SMart-Amplification Process.
Clinical cancer research : an official journal of the American Association for Cancer Research 2007;13(17):4974-83.
2007: Yukiko Doi-Katayama; Fumiaki Hayashi; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Takanori Kigawa; Mayumi Yoshida; Mikako Shirouzu; Takaho Terada; Yoshihide Hayashizaki; Shigeyuki Yokoyama; Hiroshi Hirota
Solution structure of the general transcription factor 2I domain in mouse TFII-I protein.
Protein science : a publication of the Protein Society 2007;16(8):1788-92.
2007: Yoshihiro Nakamura; Takashi Umehara; Hiroaki Hamana; Yoshihide Hayashizaki; Makoto Inoue; Takanori Kigawa; Mikako Shirouzu; Takaho Terada; Akiko Tanaka; Balasundaram Padmanabhan; Shigeyuki Yokoyama
Crystal structure analysis of the PHD domain of the transcription co-activator Pygopus.
Journal of molecular biology 2007;370(1):80-92.
2007: Laura L Baxter; Benjamin J Hsu; Lowell Umayam; Tyra G Wolfsberg; Denise M Larson; Martin C Frith; Jun Kawai; Yoshihide Hayashizaki; piero carninci; William J Pavan
Informatic and genomic analysis of melanocyte cDNA libraries as a resource for the study of melanocyte development and function.
Pigment cell research / sponsored by the European Society for Pigment Cell Research and the International Pigment Cell Society 2007;20(3):201-9.
2007: Albin Sandelin; piero carninci; Boris Lenhard; Jasmina Ponjavic; Yoshihide Hayashizaki; David A Hume
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Nature reviews. Genetics 2007;8(6):424-36.
2007: Tetsuo Sugahara; Yzumi Yamashita; Masahito Shinomi; Banri Yamanoha; Hiroyoshi Iseki; Akihiko Takeda; Yasushi Okazaki; Yoshihide Hayashizaki; Kenji Kawai; Hiroshi Suemizu; Toshiwo Andoh
Isolation of a novel mouse gene, mSVS-1/SUSD2, reversing tumorigenic phenotypes of cancer cells in vitro.
Cancer science 2007;98(6):900-8.
2007: Misao Yoneyama; Naoya Tochio; Takashi Umehara; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Satoru Watanabe; Yasuko Tomo; Yuji Nishimura; Takushi Harada; Takaho Terada; Mikako Shirouzu; Yoshihide Hayashizaki; Osamu Ohara; Akiko Tanaka; Takanori Kigawa; Shigeyuki Yokoyama
Structural and functional differences of SWIRM domain subtypes.
Journal of molecular biology 2007;369(1):222-38.
2007: Antje Purmann; Joern Toedling; Markus Schueler; piero carninci; Hans Lehrach; Yoshihide Hayashizaki; Wolfgang Huber; Silke Sperling
Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality.
Genomics 2007;89(5):580-7.
2007: Chihiro Ogawa; Kengo Usui; Makoto Aoki; Fuyu Ito; Masayoshi Itoh; Chikatoshi Kai; Mutsumi Kanamori-Katayama; Yoshihide Hayashizaki; Harukazu Suzuki
Gemin2 plays an important role in stabilizing the survival of motor neuron complex.
The Journal of biological chemistry 2007;282(15):11122-34.
2007: piero carninci; Yoshihide Hayashizaki
Noncoding RNA transcription beyond annotated genes.
Current opinion in genetics & development 2007;17(2):139-44.
2007: Daisuke Sasaki; Shinji Kondo; Norihiro Maeda; Thomas Gingeras; Yuki Hasegawa; Yoshihide Hayashizaki
Characteristics of oligonucleotide tiling arrays measured by hybridizing full-length cDNA clones: causes of signal variation and false positive signals.
Genomics 2007;89(4):541-51.
2007: Yasumasa Mitani; Alexander Lezhava; Yuki Kawai; Takeshi Kikuchi; Atsuko Oguchi-Katayama; Yasushi Kogo; Masayoshi Itoh; Toru Miyagi; Hideki Takakura; Kanako Hoshi; Chiaki Kato; Takahiro Arakawa; Kazuhiro Shibata; Kenji Fukui; Ryoji Masui; Seiki Kuramitsu; Kazuma Kiyotani; Alistair Chalk; Katsuhiko Tsunekawa; Masami Murakami; Tetsuya Kamataki; Takanori Oka; Hiroshi Shimada; Paul E Cizdziel; Yoshihide Hayashizaki
Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology.
Nature methods 2007;4(3):257-62.
2007: Shiro Tochitani; Yoshihide Hayashizaki
Functional screening revisited in the postgenomic era.
Molecular bioSystems 2007;3(3):195-207.
2007: Nemuri Todaka; Shigeharu Moriya; Kanako Saita; Tomoko Hondo; Isao Kiuchi; Hirotoshi Takasu; Moriya Ohkuma; Carninci Piero; Yoshihide Hayashizaki; Toshiaki Kudo
Environmental cDNA analysis of the genes involved in lignocellulose digestion in the symbiotic protist community of Reticulitermes speratus.
FEMS microbiology ecology 2007;59(3):592-9.
2007: Tei Maki; Satoru Kidoaki; Kengo Usui; Harukazu Suzuki; Masayoshi Ito; Fuyu Ito; Yoshihide Hayashizaki; Takehisa Matsuda
Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides.
Langmuir : the ACS journal of surfaces and colloids 2007;23(5):2668-73.
2007: Yoshihiro Nakamura; Kazumi Nakano; Takashi Umehara; Mayumi Kimura; Yoshihide Hayashizaki; Akiko Tanaka; Masami Horikoshi; Balasundaram Padmanabhan; Shigeyuki Yokoyama
Structure of the oncoprotein gankyrin in complex with S6 ATPase of the 26S proteasome.
Structure (London, England : 1993) 2007;15(2):179-89.
2007: Kirk W Beisel; Sonia M S Rocha-Sanchez; Sylvia J Ziegenbein; Ken A Morris; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Robin L Davis
Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells.
Gene 2007;386(1-2):11-23.
2007: Adele Kruger; Oliver Hofmann; piero carninci; Yoshihide Hayashizaki; Winston Hide
Simplified ontologies allowing comparison of developmental mammalian gene expression.
Genome biology 2007;8(10):R229.
2007: Kazuro Shimokawa; Yuko Okamura-Oho; Takio Kurita; Martin C Frith; Jun Kawai; piero carninci; Yoshihide Hayashizaki
Large-scale clustering of CAGE tag expression data.
BMC bioinformatics 2007;8():161.
2006: Hisashi Miura; Yasuhiro Tomaru; Yoshihide Hayashizaki
[Innovation of transcriptome analysis].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2006;51(16 Suppl):2413-9.
2006: Noriko Handa; Mutsuko Kukimoto-Niino; Ryogo Akasaka; Kazutaka Murayama; Takaho Terada; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Emi Nunokawa; Akiko Tanaka; Yoshihide Hayashizaki; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Structure of the UNC5H2 death domain.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 12):1502-9.
2006: Yasuhiro Tomaru; Yoshihide Hayashizaki
Cancer research with non-coding RNA.
Cancer science 2006;97(12):1285-90.
2006: Naoya Tochio; Seizo Koshiba; Naohiro Kobayashi; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Yoko Motoda; Atsuo Kobayashi; Akiko Tanaka; Yoshihide Hayashizaki; Takaho Terada; Mikako Shirouzu; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.
Protein science : a publication of the Protein Society 2006;15(11):2534-43.
2006: Mutsuko Kukimoto-Niino; Tetsuo Takagi; Ryogo Akasaka; Kazutaka Murayama; Tomomi Uchikubo-Kamo; Takaho Terada; Makoto Inoue; Satoru Watanabe; Akiko Tanaka; Yoshihide Hayashizaki; Takanori Kigawa; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of the RUN domain of the RAP2-interacting protein x.
The Journal of biological chemistry 2006;281(42):31843-53.
2006: Noriko Handa; Mutsuko Kukimoto-Niino; Ryogo Akasaka; Seiichiro Kishishita; Kazutaka Murayama; Takaho Terada; Makoto Inoue; Takanori Kigawa; Shingo Kose; Naoko Imamoto; Akiko Tanaka; Yoshihide Hayashizaki; Mikako Shirouzu; Shigeyuki Yokoyama
The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain.
Journal of molecular biology 2006;363(1):114-24.
2006: Kazuhiro Wada; Jason T Howard; Patrick McConnell; Osceola Whitney; Thierry Lints; Miriam V Rivas; Haruhito Horita; Michael A Patterson; Stephanie A White; Constance Scharff; Sebastian Haesler; Shengli Zhao; Hironobu Sakaguchi; Masatoshi Hagiwara; Toshiyuki Shiraki; Tomoko Hirozane-Kishikawa; Pate Skene; Yoshihide Hayashizaki; piero carninci; Erich D Jarvis
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(41):15212-7.
2006: Stefano Gustincich; Albin Sandelin; Charles Plessy; Shintaro Katayama; Roberto Simone; Dejan Lazarevic; Yoshihide Hayashizaki; piero carninci
The complexity of the mammalian transcriptome.
The Journal of physiology 2006;575(Pt 2):321-32.
2006: Masayoshi Itoh; Ayako Yasunishi; Kengo Imamura; Mutsumi Kanamori-Katayama; Harukazu Suzuki; Masanori Suzuki; piero carninci; Jun Kawai; Yoshihide Hayashizaki
Constructing ORFeome resources with removable termination codons.
BioTechniques 2006;41(1):44, 46, 48 passim.
2006: Hnin Thanda Aung; Kate Schroder; S Roy Himes; Kristian Brion; Wendy van Zuylen; Angela Trieu; Harukazu Suzuki; Yoshihide Hayashizaki; David A Hume; Matthew J Sweet; Timothy Ravasi
LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2006;20(9):1315-27.
2006: Martin C Frith; Jasmina Ponjavic; David Fredman; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Yoshihide Hayshizaki; Albin Sandelin
Evolutionary turnover of mammalian transcription start sites.
Genome research 2006;16(6):713-22.
2006: Rajith N Aturaliya; J Lynn Fink; Melissa J Davis; Melvena S Teasdale; Kelly A Hanson; Kevin C Miranda; Alistair Forrest; Sean M Grimmond; Harukazu Suzuki; Mutsumi Kanamori; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Rohan Teasdale
Subcellular localization of mammalian type II membrane proteins.
Traffic (Copenhagen, Denmark) 2006;7(5):613-25.
2006: Tatsushi Shimokuni; Keiji Tanimoto; Keiko Hiyama; Keiko Otani; Megu Ohtaki; Jun Hihara; Kazuhiro Yoshida; Tsuyoshi Noguchi; Katsunobu Kawahara; Shoji Natsugoe; Takashi Aikou; Yasushi Okazaki; Yoshihide Hayashizaki; Yuji Sato; Satoru Todo; Eiso Hiyama; Masahiko Nishiyama
Chemosensitivity prediction in esophageal squamous cell carcinoma: novel marker genes and efficacy-prediction formulae using their expression data.
International journal of oncology 2006;28(5):1153-62.
2006: Yoshihide Hayashizaki; piero carninci
Genome Network and FANTOM3: assessing the complexity of the transcriptome.
PLoS genetics 2006;2(4):e63.
2006: Vladimir Bajic; Sin Lam Tan; Alan Christoffels; Christian Schönbach; Leonard Lipovich; Liang Yang; Oliver Hofmann; Adele Kruger; Winston Hide; Chikatoshi Kai; Jun Kawai; David A Hume; piero carninci; Yoshihide Hayashizaki
Mice and men: their promoter properties.
PLoS genetics 2006;2(4):e54.
2006: Martin C Frith; Alistair Forrest; Ehsan Nourbakhsh; Ken C Pang; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Timothy Lawrence Bailey; Sean M Grimmond
The abundance of short proteins in the mammalian proteome.
PLoS genetics 2006;2(4):e52.
2006: Pär G Engström; Harukazu Suzuki; Noriko Ninomiya; Altuna Akalin; Luca Sessa; Giovanni Lavorgna; Alessandro Brozzi; Lucilla Luzi; Sin Lam Tan; Liang Yang; Galih Kunarso; Edwin Lian-Chong Ng; Serge Batalov; Claes Wahlestedt; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Christine Wells; Vladimir Bajic; Valerio Orlando; James F Reid; Boris Lenhard; Leonard Lipovich
Complex Loci in human and mouse genomes.
PLoS genetics 2006;2(4):e47.
2006: Melissa J Davis; Kelly A Hanson; Francis Clark; J Lynn Fink; Fasheng Zhang; Takeya Kasukawa; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Rohan Teasdale
Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units.
PLoS genetics 2006;2(4):e46.
2006: Tzu-Ming Chern; Erik van Nimwegen; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Mihaela Zavolan
A simple physical model predicts small exon length variations.
PLoS genetics 2006;2(4):e45.
2006: Shigeto Seno; Yoichi Takenaka; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Hideo Matsuda
A method for similarity search of genomic positional expression using CAGE.
PLoS genetics 2006;2(4):e44.
2006: Masaaki Furuno; Ken C Pang; Noriko Ninomiya; Shiro Fukuda; Martin C Frith; Carol Bult; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; John S Mattick; Harukazu Suzuki
Clusters of internally primed transcripts reveal novel long noncoding RNAs.
PLoS genetics 2006;2(4):e37.
2006: Martin Taylor; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Colin Semple
Heterotachy in mammalian promoter evolution.
PLoS genetics 2006;2(4):e30.
2006: Martin C Frith; Laurens G Wilming; Alistair Forrest; Hideya Kawaji; Sin Lam Tan; Claes Wahlestedt; Vladimir Bajic; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Timothy Lawrence Bailey; Lukasz Huminiecki
Pseudo-messenger RNA: phantoms of the transcriptome.
PLoS genetics 2006;2(4):e23.
2006: Rimantas Kodzius; Miki Kojima; Hiromi Nishiyori; Mari Nakamura; Shiro Fukuda; Michihira Tagami; Daisuke Sasaki; Kengo Imamura; Chikatoshi Kai; Matthias Harbers; Yoshihide Hayashizaki; piero carninci
CAGE: cap analysis of gene expression.
Nature methods 2006;3(3):211-22.
2006: Yoshinari Ando; Yoshihide Hayashizaki
Restriction landmark genomic scanning.
Nature protocols 2006;1(6):2774-83.
2006: Manisha Brahmachary; Christian Schönbach; Liang Yang; Enli Huang; Sin Lam Tan; Rajesh Chowdhary; S P T Krishnan; Chin-Yo Lin; David A Hume; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Vladimir Bajic
Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.
BMC bioinformatics 2006;7 Suppl 5():S8.
2006: Hideya Kawaji; Martin C Frith; Shintaro Katayama; Albin Sandelin; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki
Dynamic usage of transcription start sites within core promoters.
Genome biology 2006;7(12):R118.
2006: Martin C Frith; Timothy Lawrence Bailey; Takeya Kasukawa; Flavio Mignone; Sarah K Kummerfeld; Martin Madera; Sirisha Sunkara; Masaaki Furuno; Carol Bult; John Quackenbush; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Graziano Pesole; John S Mattick
Discrimination of non-protein-coding transcripts from protein-coding mRNA.
RNA biology 2006;3(1):40-8.
2006: Jasmina Ponjavic; Boris Lenhard; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Albin Sandelin
Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters.
Genome biology 2006;7(8):R78.
2006: Yuki Hasegawa; Shiro Fukuda; Kazuro Shimokawa; Shinji Kondo; Norihiro Maeda; Yoshihide Hayashizaki
A RecA-mediated exon profiling method.
Nucleic acids research 2006;34(13):e97.
2006: Hiromi Nishida; Takahiro Suzuki; Shinji Kondo; Hisashi Miura; Yu-ichi Fujimura; Yoshihide Hayashizaki
Histone H3 acetylated at lysine 9 in promoter is associated with low nucleosome density in the vicinity of transcription start site in human cell.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2006;14(2):203-11.
2006: Christine A Wells; Alistair Chalk; Alistair Forrest; Darrin Taylor; Nic Waddell; Kate Schroder; S Roy Himes; Geoffrey J Faulkner; Sandra Lo; Takeya Kasukawa; Hideya Kawaji; Chikatoshi Kai; Jun Kawai; Shintaro Katayama; piero carninci; Yoshihide Hayashizaki; David A Hume; Sean M Grimmond
Alternate transcription of the Toll-like receptor signaling cascade.
Genome biology 2006;7(2):R10.
2006: Alistair Forrest; Darrin F Taylor; Mark L Crowe; Alistair Chalk; Nic J Waddell; Gabriel Kolle; Geoffrey J Faulkner; Rimantas Kodzius; Shintaro Katayama; Christine Wells; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Sean M Grimmond
Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases.
Genome biology 2006;7(1):R5.
2006: Alistair Forrest; Darrin F Taylor; J Lynn Fink; M Milena Gongora; Cameron Flegg; Rohan Teasdale; Harukazu Suzuki; Mutsumi Kanamori; Chikatoshi Kai; Yoshihide Hayashizaki; Sean M Grimmond
PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.
BMC bioinformatics 2006;7():82.
2006: Atsushi Noguchi; Naoko Watanabe; Ryoji Fujimaki; Toshio Kitamura; Yoshihide Hayashizaki; Shigeru Miyaki; Ken-ichi Tezuka; Nobumichi Hozumi
Use of the SST-REX method for the identification of genes expressed at the condensation stage of chondrogenic cell line ATDC5.
Journal of bone and mineral metabolism 2006;24(2):153-7.
2006: Hideya Kawaji; Takeya Kasukawa; Shiro Fukuda; Shintaro Katayama; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.
Nucleic acids research 2006;34(Database issue):D632-6.
2006: J Lynn Fink; Rajith N Aturaliya; Melissa J Davis; Fasheng Zhang; Kelly Hanson; Melvena S Teasdale; Chikatoshi Kai; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Rohan Teasdale
LOCATE: a mouse protein subcellular localization database.
Nucleic acids research 2006;34(Database issue):D213-7.
2006: Timothy Ravasi; Harukazu Suzuki; Ken C Pang; Shintaro Katayama; Masaaki Furuno; Rie Okunishi; Shiro Fukuda; Kelin Ru; Martin C Frith; M Milena Gongora; Sean M Grimmond; David A Hume; Yoshihide Hayashizaki; John S Mattick
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.
Genome research 2006;16(1):11-9.
2005: Kouji Miyagawa; Chouhei Sakakura; Susumu Nakashima; Tetsuji Yoshikawa; Shuichi Kin; Yuen Nakase; Kenichirou Fukuda; Akeo Hagiwara; Yasushi Okazaki; Yoshihide Hayashizaki; Hisakazu Yamagishi
[Analysis of Reg IV expression in peritoneal dissemination of gastric cancer using real-time RT-PCR].
Gan to kagaku ryoho. Cancer & chemotherapy 2005;32(11):1707-8.
2005: Vassilis Aidinis; piero carninci; Maria Armaka; Walter Witke; Vaggelis Harokopos; Norman Pavelka; Dirk Koczan; Christos Argyropoulos; Maung-Maung Thwin; Steffen Möller; Kazunori Waki; Waki Kazunori; Ponnampalam Gopalakrishnakone; Paola Ricciardi-Castagnoli; Hans-Jürgen Thiesen; Yoshihide Hayashizaki; george kollias
Cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled rheumatoid arthritis.
PLoS genetics 2005;1(4):e48.
2005: Alimjan Idiris; Satoru Kidoaki; Kengo Usui; Tei Maki; Harukazu Suzuki; Masayoshi Ito; Makoto Aoki; Yoshihide Hayashizaki; Takehisa Matsuda
Force measurement for antigen-antibody interaction by atomic force microscopy using a photograft-polymer spacer.
Biomacromolecules 2005;6(5):2776-84.
2005: Hua Li; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Emi Nunokawa; Yoko Motoda; Atsuo Kobayashi; Takaho Terada; Mikako Shirouzu; Seizo Koshiba; Yi-Jan Lin; Peter Güntert; Harukazu Suzuki; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold.
Journal of biomolecular NMR 2005;32(4):329-34.
2005: Manabu Ichikawa; Yuko Okamura-Oho; Rie Okunishi; Mutsumi Kanamori; Harukazu Suzuki; Akishige Ritani; Hiroaki Nitta; Naomi Eguchi; Yoshihiro Urade; Yoshihide Hayashizaki
Expression analysis of genes responsible for serotonin signaling in the brain.
Neurobiology of disease 2005;19(3):378-85.
2005: Yutaka Furutani; Ri-ichiroh Manabe; Ko Tsutsui; Tomiko Yamada; Nagisa Sugimoto; Shiro Fukuda; Jun Kawai; Nobuo Sugiura; Koji Kimata; Yoshihide Hayashizaki; Kiyotoshi Sekiguchi
Identification and characterization of photomedins: novel olfactomedin-domain-containing proteins with chondroitin sulphate-E-binding activity.
The Biochemical journal 2005;389(Pt 3):675-84.
2005: Ken-ichi Matsuo; Shinji Togo; Hitoshi Sekido; Tomoyuki Morita; Masako Kamiyama; Daisuke Morioka; Toru Kubota; Yasuhiko Miura; Kuniya Tanaka; Takashi Ishikawa; Yasushi Ichikawa; Itaru Endo; Hitoshi Goto; Hiroyuki Nitanda; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Pharmacologic preconditioning effects: prostaglandin E1 induces heat-shock proteins immediately after ischemia/reperfusion of the mouse liver.
Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract 2005;9(6):758-68.
2005: Keiko Hiyama; Keiko Otani; Megu Ohtaki; Kenichi Satoh; Tsutomu Kumazaki; Tomoko Takahashi; Youji Mitsui; Yasushi Okazaki; Yoshihide Hayashizaki; Hideaki Omatsu; Takuya Noguchi; Keiji Tanimoto; Masahiko Nishiyama
Differentially expressed genes throughout the cellular immortalization processes are quite different between normal human fibroblasts and endothelial cells.
International journal of oncology 2005;27(1):87-95.
2005: Ryoichi Arai; Mutsuko Kukimoto-Niino; Hiroko Uda-Tochio; Satoshi Morita; Tomomi Uchikubo-Kamo; Ryogo Akasaka; Yuuka Etou; Yoshihide Hayashizaki; Takanori Kigawa; Takaho Terada; Mikako Shirouzu; Shigeyuki Yokoyama
Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution.
Protein science : a publication of the Protein Society 2005;14(7):1888-93.
2005: Noriyuki Nishioka; Seiichi Nagano; Rika Nakayama; Hiroshi Kiyonari; Takashi Ijiri; Kenichiro Taniguchi; William Shawlot; Yoshihide Hayashizaki; Heiner Westphal; Richard R Behringer; Yoichi Matsuda; Saburo Sakoda; Hisato Kondoh; Hiroshi Sasaki
Ssdp1 regulates head morphogenesis of mouse embryos by activating the Lim1-Ldb1 complex.
Development (Cambridge, England) 2005;132(11):2535-46.
2005: Yonehiro Matsumura; Kazuro Shimokawa; Yoshihide Hayashizaki; Kazuho Ikeo; Yoshio Tateno; Jun Kawai
Development of a spot reliability evaluation score for DNA microarrays.
Gene 2005;350(2):149-60.
2005: Noriyuki Kitagawa; Takanori Washio; Shunichi Kosugi; Tomoya Yamashita; Kenji Higashi; Hiroshi Yanagawa; Kenichi Higo; Koji Satoh; Yasuhiro Ohtomo; Tomomi Sunako; Kazuo Murakami; Kenichi Matsubara; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Shoshi Kikuchi; Masaru Tomita
Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa).
Bioinformatics (Oxford, England) 2005;21(9):1758-63.
2005: Atsushi Nakabachi; Shuji Shigenobu; Naoko Sakazume; Toshiyuki Shiraki; Yoshihide Hayashizaki; piero carninci; Hajime Ishikawa; Toshiaki Kudo; Takema Fukatsu
Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(15):5477-82.
2005: Hidenori Kiyosawa; Nathan Mise; Shigeru Iwase; Yoshihide Hayashizaki; Kuniya Abe
Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized.
Genome research 2005;15(4):463-74.
2005: Miriam Barrios-Rodiles; Kevin R Brown; Barish Ozdamar; Rohit Bose; Zhong Liu; Robert S Donovan; Fukiko Shinjo; Yongmei Liu; Joanna Dembowy; Ian W Taylor; Valbona Luga; Natasa Przulj; Mark Robinson; Harukazu Suzuki; Yoshihide Hayashizaki; Igor Jurisica; Jeffrey L Wrana
High-throughput mapping of a dynamic signaling network in mammalian cells.
Science (New York, N.Y.) 2005;307(5715):1621-5.
2005: Tsuyoshi Takagi; Chouhei Sakakura; Shuichi Kin; Yuen Nakase; Kenichiro Fukuda; Katsumi Shimomura; Tadao Ito; Junshin Fujiyama; Junya Yamasaki; Hiroyuki Tsujimoto; Yasushi Okazaki; Yoshihide Hayashizaki; Hisakazu Yamagishi; Akeo Hagiwara
Dextran sulfate suppresses cell adhesion and cell cycle progression of melanoma cells.
Anticancer research 2005;25(2A):895-902.
2005: Ken A Morris; Einat Snir; Celine Pompeia; Irina V Koroleva; Anne E White-Olson; Yoshihide Hayashizaki; piero carninci; M Bento Soares; Kirk W Beisel
Differential expression of genes within the cochlea as defined by a custom mouse inner ear microarray.
Journal of the Association for Research in Otolaryngology : JARO 2005;6(1):75-89.
2005: Nobukazu Nameki; Naoya Tochio; Seizo Koshiba; Makoto Inoue; Takashi Yabuki; Masaaki Aoki; Eiko Seki; Takayoshi Matsuda; Yukiko Fujikura; Miyuki Saito; Masaomi Ikari; Megumi Watanabe; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Hiroshi Hirota; Akiko Tanaka; Yoshihide Hayashizaki; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
Protein science : a publication of the Protein Society 2005;14(3):756-64.
2005: Kengo Usui; Shintaro Katayama; Mutsumi Kanamori-Katayama; Chihiro Ogawa; Chikatoshi Kai; Makiko Okada; Jun Kawai; Takahiro Arakawa; piero carninci; Masayoshi Itoh; Koji Takio; Masashi Miyano; Satoru Kidoaki; Takehisa Matsuda; Yoshihide Hayashizaki; Harukazu Suzuki
Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Genome biology 2005;6(12):R98.
2005: David P Sester; Angela Trieu; Kristian Brion; Kate Schroder; Timothy Ravasi; Jodie A Robinson; Rebecca C McDonald; Vera Ripoll; Christine A Wells; Harukazu Suzuki; Yoshihide Hayashizaki; Katryn J Stacey; David A Hume; Matthew J Sweet
LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action.
Immunobiology 2005;210(2-4):97-107.
2005: Hiromi Nishida; Takahiro Suzuki; Hiroki Ookawa; Yasuhiro Tomaru; Yoshihide Hayashizaki
Comparative analysis of expression of histone H2a genes in mouse.
BMC genomics 2005;6():108.
2005: Harukazu Suzuki; Yoshihide Hayashizaki
Human genome research enters a new phase.
Genome biology 2005;6(8):337.
2005: Hiromi Nishida; Yasuhiro Tomaru; Yuko Oho; Yoshihide Hayashizaki
Naturally occurring antisense RNA of histone H2a in mouse cultured cell lines.
BMC genetics 2005;6():23.
2005: Hiromi Nishida; Takahiro Suzuki; Yasuhiro Tomaru; Yoshihide Hayashizaki
A novel replication-independent histone H2a gene in mouse.
BMC genetics 2005;6():10.
2005: Randolph B Caldwell; Andrzej M Kierzek; Hiroshi Arakawa; Yuri Bezzubov; Jolanta Zaim; Petra Fiedler; Stefan Kutter; Artem Blagodatski; Diyana Kostovska; Marek Koter; Jiri Plachy; piero carninci; Yoshihide Hayashizaki; Jean-Marie Buerstedde
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis.
Genome biology 2005;6(1):R6.
2005: Ken C Pang; Stuart Stephen; Pär G Engström; Khairina Tajul-Arifin; Weisan Chen; Claes Wahlestedt; Boris Lenhard; Yoshihide Hayashizaki; John S Mattick
RNAdb--a comprehensive mammalian noncoding RNA database.
Nucleic acids research 2005;33(Database issue):D125-30.
2004: Akira Watahiki; Kazunori Waki; Norihito Hayatsu; Toshiyuki Shiraki; Shinji Kondo; Mari Nakamura; Daisuke Sasaki; Takahiro Arakawa; Jun Kawai; Matthias Harbers; Yoshihide Hayashizaki; piero carninci
Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas.
Nature methods 2004;1(3):233-9.
2004: Yoshihide Hayashizaki
[Future views on genome network projects].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):3017.
2004: Yoshihide Hayashizaki; Toshihiko Oinuma; Shotaro Kohtsuki
[Genomic project network and the patents (discussion)].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):3001-16.
2004: Miki Nishikawa; Yoshihide Hayashizaki
[Significance of RNAi in biology].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):2832-6.
2004: Yoshihide Hayashizaki
[Genome network: the new researching style].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):2617-9.
2004: Harukazu Suzuki; Chihiro Ogawa; Kengo Usui; Yoshihide Hayashizaki
In vitro pull-down assay without expression constructs.
BioTechniques 2004;37(6):918, 920.
2004: Takeya Kasukawa; Shintaro Katayama; Hideya Kawaji; Harukazu Suzuki; David A Hume; Yoshihide Hayashizaki
Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis.
Genomics 2004;84(6):913-21.
2004: Thomas Weaver; Johannes Maurer; Yoshihide Hayashizaki
Sharing genomes: an integrated approach to funding, managing and distributing genomic clone resources.
Nature reviews. Genetics 2004;5(11):861-6.
2004: Ryoichi Arai; Kaori Ito; Motoaki Wakiyama; Eiko Matsumoto; Ayako Sakamoto; Yuuka Etou; Makiko Otsuki; Mio Inoue; Yoshihide Hayashizaki; Makoto Miyagishi; Kazunari Taira; Mikako Shirouzu; Shigeyuki Yokoyama
Establishment of stable hFis1 knockdown cells with an siRNA expression vector.
Journal of biochemistry 2004;136(4):421-5.
2004: Kouji Miyagawa; Chouhei Sakakura; Shuichi Kin; Yuen Nakase; Kenichirou Fukuda; Akeo Hagiwara; Yasushi Okazaki; Yoshihide Hayashizaki; Hisakazu Yamagishi
[Over expression of Reg IV in peritoneal dissemination of gastric cancer].
Gan to kagaku ryoho. Cancer & chemotherapy 2004;31(11):1909-11.
2004: Chouhei Sakakura; Manabu Takemura; Kouji Miyagawa; Ken-ichiro Fukuda; Katsumi Shimomura; Shuichi Kin; Yuen Nakase; Yoshiaki Kuriu; Susumu Nakashima; Tetsuji Yoshikawa; Yuji Ueda; Junshin Fujiyama; Teruhisa Sonoyama; Yasushi Okazaki; Yoshihide Hayashizaki; Akeo Hagiwara; Hisakazu Yamagishi
[Utility of dopa decarboxylase as a novel marker for the detection of peritoneal micro-metastases of gastric cancer with realtime RT-PCR].
Gan to kagaku ryoho. Cancer & chemotherapy 2004;31(11):1906-8.
2004: Martin Yuille; Bernhard Korn; Troy Moore; Andrew A Farmer; John A Carrino; Christa Prange; Yoshihide Hayashizaki
The responsibility to share: sharing the responsibility.
Genome research 2004;14(10B):2015-9.
2004: Toshifumi Nagata; Shigemi Iizumi; Kouji Satoh; Hisako Ooka; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Yasuhiro Otomo; Kazuo Murakami; Kenichi Matsubara; Shoshi Kikuchi
Comparative analysis of plant and animal calcium signal transduction element using plant full-length cDNA data.
Molecular biology and evolution 2004;21(10):1855-70.
2004: Mutsumi Kanamori; Hideaki Konno; Naoki Osato; Jun Kawai; Yoshihide Hayashizaki; Harukazu Suzuki
A genome-wide and nonredundant mouse transcription factor database.
Biochemical and biophysical research communications 2004;322(3):787-93.
2004: Tomotaka Tanaka; Keiji Tanimoto; Keiko Otani; Kenichi Satoh; Megu Ohtaki; Kazuhiro Yoshida; Tetsuya Toge; Hiroshi Yahata; Shinji Tanaka; Kazuaki Chayama; Yasushi Okazaki; Yoshihide Hayashizaki; Keiko Hiyama; Masahiko Nishiyama
Concise prediction models of anticancer efficacy of 8 drugs using expression data from 12 selected genes.
International journal of cancer. Journal international du cancer 2004;111(4):617-26.
2004: Shintaro Katayama; Mutsumi Kanamori; Yoshihide Hayashizaki
Integrated analysis of the genome and the transcriptome by FANTOM.
Briefings in bioinformatics 2004;5(3):249-58.
2004: Harukazu Suzuki; Rie Okunishi; Wataru Hashizume; Shintaro Katayama; Noriko Ninomiya; Naoki Osato; Kenjiro Sato; Mari Nakamura; Juri Iida; Mutsumi Kanamori; Yoshihide Hayashizaki
Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR.
FEBS letters 2004;573(1-3):214-8.
2004: David M Lin; Yee Hwa Yang; jonathan scolnick; Lisa J Brunet; Heather Marsh; Vivian Peng; Yasushi Okazaki; Yoshihide Hayashizaki; Terence P Speed; John Ngai
Spatial patterns of gene expression in the olfactory bulb.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(34):12718-23.
2004: Yasunari Ogihara; Keiichi Mochida; Kanako Kawaura; Koji Murai; Motoaki Seki; Asako Kamiya; Kazuo Shinozaki; piero carninci; Yoshihide Hayashizaki; Tadasu Shin-i; Yuji Kohara; Yukiko Yamazaki
Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags.
Genes & genetic systems 2004;79(4):227-32.
2004: Masanori Suzuki; Yoshihide Hayashizaki
Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs.
BioEssays : news and reviews in molecular, cellular and developmental biology 2004;26(8):833-43.
2004: Nobukazu Nameki; Misao Yoneyama; Seizo Koshiba; Naoya Tochio; Makoto Inoue; Eiko Seki; Takayoshi Matsuda; Yasuko Tomo; Takushi Harada; Kohei Saito; Naohiro Kobayashi; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Natsuko Matsuda; Noriko Sakagami; Takaho Terada; Mikako Shirouzu; Mayumi Yoshida; Hiroshi Hirota; Takashi Osanai; Akiko Tanaka; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Kengo Kinoshita; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the RWD domain of the mouse GCN2 protein.
Protein science : a publication of the Protein Society 2004;13(8):2089-100.
2004: Yasumasa Mitani; Takayuki Nakayama; Matthias Harbers; Yoshihide Hayashizaki
Aptamer-dependent full-length cDNA synthesis by overlap extension PCR.
BioTechniques 2004;37(1):124, 126, 128-9.
2004: Tomonari Sasazuki; Tatsuma Okazaki; Kurisu Tada; Sachiko Sakon-Komazawa; Mitsuo Katano; Masao Tanaka; Hideo Yagita; Ko Okumura; Naoko Tominaga; Yoshihide Hayashizaki; Yasushi Okazaki; Hiroyasu Nakano
Genome wide analysis of TNF-inducible genes reveals that antioxidant enzymes are induced by TNF and responsible for elimination of ROS.
Molecular immunology 2004;41(5):547-51.
2004: Hideaki Fujita; Yusuke Umezuki; Kanako Imamura; Daisuke Ishikawa; Seiko Uchimura; Atsuki Nara; Tamotsu Yoshimori; Yoshihide Hayashizaki; Jun Kawai; Kazumi Ishidoh; Yoshitaka Tanaka; Masaru Himeno
Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B.
Journal of cell science 2004;117(Pt 14):2997-3009.
2004: Yasuhiko Nagano; Kaoru Nagahori; F Yoshiro; Y Hamaguchi; Takashi Ishikawa; Yasushi Ichikawa; Shinji Togo; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Gene expression profile analysis of regenerating liver after portal vein ligation in rats by a cDNA microarray system.
Liver international : official journal of the International Association for the Study of the Liver 2004;24(3):253-8.
2004: Kirk W Beisel; Toshiyuki Shiraki; Ken A Morris; Celine Pompeia; Anne E White-Olson; Takahiro Arakawa; Hidemasa Bono; Jun Kawai; Yoshihide Hayashizaki; piero carninci
Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library.
Genomics 2004;83(6):1012-23.
2004: Junshi Yazaki; Zenpei Shimatani; Akiko Hashimoto; Yuko Nagata; Fumiko Fujii; Keiichi Kojima; Kohji Suzuki; Toshiki Taya; Mio Tonouchi; Charles Nelson; Allen Nakagawa; Yasuhiro Otomo; Kazuo Murakami; Kenichi Matsubara; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Shoshi Kikuchi
Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.
Physiological genomics 2004;17(2):87-100.
2004: Stefano Gustincich; Massimo Contini; manuela gariboldi; Michelino Puopolo; Koji Kadota; Hidemasa Bono; Julianna LeMieux; Pamela Walsh; piero carninci; Yoshihide Hayashizaki; Yasushi Okazaki; Elio Raviola
Gene discovery in genetically labeled single dopaminergic neurons of the retina.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(14):5069-74.
2004: Yoshihide Hayashizaki; Mutsumi Kanamori
Dynamic transcriptome of mice.
Trends in biotechnology 2004;22(4):161-7.
2004: Takeshi Maeda; Makoto Inoue; Seizo Koshiba; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Yoko Motoda; Atsuo Kobayashi; Fumiko Hiroyasu; Mikako Shirouzu; Takaho Terada; Nobuhiro Hayami; Yoshiko Ishizuka; Naoko Shinya; Ayako Tatsuguchi; Mayumi Yoshida; Hiroshi Hirota; Yo Matsuo; Kazutoshi Tani; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16).
The Journal of biological chemistry 2004;279(13):13174-82.
2004: Katsumi Shimomura; Chouhei Sakakura; Manabu Takemura; Tsuyoshi Takagi; Kenichiro Fukuda; Shuichi Kin; Yuen Nakase; Kouji Miyagawa; Masaharu Ohgaki; Junshin Fujiyama; Yoshifumi Fujita; Masayoshi Nakanishi; Akeo Hagiwara; Masatomo Shirane; Yasushi Okazaki; Yoshihide Hayashizaki; Hisakazu Yamagishi
Combination of L-3-phosphoserine phosphatase and CEA using real-time RT-PCR improves accuracy in detection of peritoneal micrometastasis of gastric cancer.
Anticancer research 2004;24(2C):1113-20.
2004: Shinji Togo; Hirochika Makino; Takatoshi Kobayashi; Tomoyuki Morita; Tetsuya Shimizu; Toru Kubota; Yasushi Ichikawa; Takashi Ishikawa; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Mechanism of liver regeneration after partial hepatectomy using mouse cDNA microarray.
Journal of hepatology 2004;40(3):464-71.
2004: Yoshihide Hayashizaki; Jun Kawai
A new approach to the distribution and storage of genetic resources.
Nature reviews. Genetics 2004;5(3):223-8.
2004: Chiung-Wen Chang; Chi-Wei Tsai; Hsiao-Fang Wang; Hsiu-Chao Tsai; Huei-Ying Chen; Ting-Fen Tsai; Hiroshi Takahashi; Hui-Yun Li; Ming-Ji Fann; Chu-Wen Yang; Yoshihide Hayashizaki; Tetsuichiro Saito; Fu-Chin Liu
Identification of a developmentally regulated striatum-enriched zinc-finger gene, Nolz-1, in the mammalian brain.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(8):2613-8.
2004: Takashi Shimoji; Hiroaki Kanda; Tomoyuki Kitagawa; Koji Kadota; Ryoichi Asai; Katsutoshi Takahashi; Noriyoshi Kawaguchi; Seiichi Matsumoto; Yoshihide Hayashizaki; Yasushi Okazaki; Kenichi Shinomiya
Clinico-molecular study of dedifferentiation in well-differentiated liposarcoma.
Biochemical and biophysical research communications 2004;314(4):1133-40.
2004: Rimantas Kodzius; Yonehiro Matsumura; Takeya Kasukawa; Kazuro Shimokawa; Shiro Fukuda; Toshiyuki Shiraki; Mari Nakamura; Takahiro Arakawa; Daisuke Sasaki; Jun Kawai; Matthias Harbers; piero carninci; Yoshihide Hayashizaki
Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags.
FEBS letters 2004;559(1-3):22-6.
2004: Juan Hou; Kenta Yashiro; Yasushi Okazaki; Yukio Saijoh; Yoshihide Hayashizaki; Hiroshi Hamada
Identification of a novel left-right asymmetrically expressed gene in the mouse belonging to the BPI/PLUNC superfamily.
Developmental dynamics : an official publication of the American Association of Anatomists 2004;229(2):373-9.
2004: Takuma Kasai; Makoto Inoue; Seizo Koshiba; Takashi Yabuki; Masaaki Aoki; Emi Nunokawa; Eiko Seki; Takayoshi Matsuda; Natsuko Matsuda; Yasuko Tomo; Mikako Shirouzu; Takaho Terada; Naomi Obayashi; Hiroaki Hamana; Naoko Shinya; Ayako Tatsuguchi; Satoko Yasuda; Mayumi Yoshida; Hiroshi Hirota; Yo Matsuo; Kazutoshi Tani; Harukazu Suzuki; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Takanori Kigawa; Shigeyuki Yokoyama
Solution structure of a BolA-like protein from Mus musculus.
Protein science : a publication of the Protein Society 2004;13(2):545-8.
2004: Wenzheng Zhang; Yoshihide Hayashizaki; Bruce Kone
Structure and regulation of the mDot1 gene, a mouse histone H3 methyltransferase.
The Biochemical journal 2004;377(Pt 3):641-51.
2004: Yutaka Suzuki; Riu Yamashita; Matsuyuki Shirota; Yuta Sakakibara; Joe Chiba; Junko Mizushima-Sugano; Alexander Kel; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Toshihisa Takagi; Kenta Nakai; Sumio Sugano
Large-scale collection and characterization of promoters of human and mouse genes.
In silico biology 2004;4(4):429-44.
2004: Taku Tanaka; Yasuhiro Tomaru; Yuki Nomura; Hisashi Miura; Masanori Suzuki; Yoshihide Hayashizaki
Comprehensive search for HNF-1beta-regulated genes in mouse hepatoma cells perturbed by transcription regulatory factor-targeted RNAi.
Nucleic acids research 2004;32(9):2740-50.
2004: Takeya Kasukawa; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Hideo Matsuda
MaXML: mouse annotation XML.
In silico biology 2004;4(1):7-15.
2004: Itoshi Nikaido; Chika Saito; Akiko Wakamoto; Yasuhiro Tomaru; Takahiro Arakawa; Yoshihide Hayashizaki; Yasushi Okazaki
EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes.
Nucleic acids research 2004;32(Database issue):D548-51.
2004: Takeshi Nagashima; Hideo Matsuda; Diego G Silva; Nikolai Petrovsky; Akihiko Konagaya; Christian Schönbach; Takeya Kasukawa; Takahiro Arakawa; piero carninci; Jun Kawai; Yoshihide Hayashizaki
FREP: a database of functional repeats in mouse cDNAs.
Nucleic acids research 2004;32(Database issue):D471-5.
2003: Hisako Ooka; Kouji Satoh; Koji Doi; Toshifumi Nagata; Yasuhiro Otomo; Kazuo Murakami; Kenichi Matsubara; Naoki Osato; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Koji Suzuki; Keiichi Kojima; Yoshinori Takahara; Koji Yamamoto; Shoshi Kikuchi
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
DNA research : an international journal for rapid publication of reports on genes and genomes 2003;10(6):239-47.
2003: Toshiyuki Shiraki; Shinji Kondo; Shintaro Katayama; Kazunori Waki; Takeya Kasukawa; Hideya Kawaji; Rimantas Kodzius; Akira Watahiki; Mari Nakamura; Takahiro Arakawa; Shiro Fukuda; Daisuke Sasaki; Anna J Podhajska; Matthias Harbers; Jun Kawai; piero carninci; Yoshihide Hayashizaki
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(26):15776-81.
2003: Sugiko Futaki; Yoshitaka Hayashi; Megumi Yamashita; Ken Yagi; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Kiyotoshi Sekiguchi
Molecular basis of constitutive production of basement membrane components. Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells.
The Journal of biological chemistry 2003;278(50):50691-701.
2003: Shigeo Fujimori; Takanori Washio; Kenichi Higo; Yasuhiro Ohtomo; Kazuo Murakami; Kenichi Matsubara; Jun Kawai; piero carninci; Yoshihide Hayashizaki; Shoshi Kikuchi; Masaru Tomita
A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription.
FEBS letters 2003;554(1-2):17-22.
2003: manuela gariboldi; Monica Spinola; Silvano Milani; Carmen Pignatiello; Koji Kadota; Hidemasa Bono; Yoshihide Hayashizaki; Tommaso A Dragani; Yasushi Okazaki
Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.
Carcinogenesis 2003;24(11):1819-26.
2003: Yasuhiro Tomaru; Shinji Kondo; Masanori Suzuki; Yoshihide Hayashizaki
A comprehensive search for HNF-3alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis.
Biochemical and biophysical research communications 2003;310(2):667-74.
2003: Mutsumi Kanamori; Peter Sandy; Stefania Marzinotto; Roberta Benetti; Chikatoshi Kai; Yoshihide Hayashizaki; Claudio Schneider; Harukazu Suzuki
The PDZ protein tax-interacting protein-1 inhibits beta-catenin transcriptional activity and growth of colorectal cancer cells.
The Journal of biological chemistry 2003;278(40):38758-64.
2003: Yoshihide Hayashizaki
The Riken mouse genome encyclopedia project.
Comptes rendus biologies 2003;326(10-11):923-9.
2003: Chouhei Sakakura; Kouji Miyagawa; Kenichiro Fukuda; Katsumi Shimomura; Manabu Takemura; Tsuyoshi Takagi; Shuichi Kin; Yuen Nakase; Junshin Fujiyama; Katsuhiko Mikoshiba; Yasushi Okazaki; Yoshihide Hayashizaki; Akeo Hagiwara; Hisakazu Yamagishi
[Possible involvement of inositol 1, 4, 5-trisphosphate receptor type 3 (IP3R3) in the peritoneal dissemination of gastric cancers].
Gan to kagaku ryoho. Cancer & chemotherapy 2003;30(11):1784-7.
2003: Tomoko Hirozane-Kishikawa; Toshiyuki Shiraki; Kazunori Waki; Mari Nakamura; Takahiro Arakawa; Jun Kawai; Michela Fagiolini; Takao K Hensch; Yoshihide Hayashizaki; piero carninci
Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts.
BioTechniques 2003;35(3):510-6, 518.
2003: Chikara Kokubu; Bettina Wilm; Tomoko Kokubu; Matthias Wahl; Isabel Rodrigo; Norio Sakai; Fabio Santagati; Yoshihide Hayashizaki; Misao Suzuki; Ken-Ichi Yamamura; Kuniya Abe; Kenji Imai
Undulated short-tail deletion mutation in the mouse ablates Pax1 and leads to ectopic activation of neighboring Nkx2-2 in domains that normally express Pax1.
Genetics 2003;165(1):299-307.
2003: Christine A Wells; Timothy Ravasi; Geoffrey J Faulkner; piero carninci; Yasushi Okazaki; Yoshihide Hayashizaki; Matthew J Sweet; Brandon J Wainwright; David A Hume
Genetic control of the innate immune response.
BMC immunology 2003;4():5.
2003: Tomoaki Nishiyama; Tomomichi Fujita; Tadasu Shin-i; Motoaki Seki; Hiroyo Nishide; Ikuo Uchiyama; Asako Kamiya; piero carninci; Yoshihide Hayashizaki; Kazuo Shinozaki; Yuji Kohara; Mitsuyasu Hasebe
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(13):8007-12.
2003: Takeya Kasukawa; Masaaki Furuno; Itoshi Nikaido; Hidemasa Bono; David A Hume; Carol Bult; David P Hill; Richard Baldarelli; Julian Gough; Alexander Kanapin; Hideo Matsuda; Lynn M Schriml; Yoshihide Hayashizaki; Yasushi Okazaki; John Quackenbush
Development and evaluation of an automated annotation pipeline and cDNA annotation system.
Genome research 2003;13(6B):1542-51.
2003: Harukazu Suzuki; Rintaro Saito; Mutsumi Kanamori; Chikatoshi Kai; Christian Schönbach; Takeshi Nagashima; Junko Hosaka; Yoshihide Hayashizaki
The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.
Genome research 2003;13(6B):1534-41.
2003: Jun Kawai; Yoshihide Hayashizaki
DNA book.
Genome research 2003;13(6B):1488-95.
2003: Masaaki Furuno; Takeya Kasukawa; Rintaro Saito; Jun Adachi; Harukazu Suzuki; Richard Baldarelli; Yoshihide Hayashizaki; Yasushi Okazaki
CDS annotation in full-length cDNA sequence.
Genome research 2003;13(6B):1478-87.
2003: Itoshi Nikaido; Chika Saito; Yosuke Mizuno; Makiko Meguro; Hidemasa Bono; Moritoshi Kadomura; Tomohiro Kono; Gerard A J Morris; Paul A Lyons; Mitsuo Oshimura; Yoshihide Hayashizaki; Yasushi Okazaki
Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling.
Genome research 2003;13(6B):1402-9.
2003: Stefano Gustincich; Serge Batalov; Kirk W Beisel; Hidemasa Bono; piero carninci; Colin F Fletcher; Sean M Grimmond; Nobutaka Hirokawa; Erich D Jarvis; Tim Jegla; Yuka Kawasawa; Julianna LeMieux; Harukata Miki; Elio Raviola; Rohan Teasdale; Naoko Tominaga; Ken Yagi; Andreas Zimmer; Yoshihide Hayashizaki; Yasushi Okazaki
Analysis of the mouse transcriptome for genes involved in the function of the nervous system.
Genome research 2003;13(6B):1395-401.
2003: Sean M Grimmond; Kevin C Miranda; Zheng Yuan; Melissa J Davis; David A Hume; Ken Yagi; Naoko Tominaga; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Rohan Teasdale
The mouse secretome: functional classification of the proteins secreted into the extracellular environment.
Genome research 2003;13(6B):1350-9.
2003: Hidemasa Bono; Itoshi Nikaido; Takeya Kasukawa; Yoshihide Hayashizaki; Yasushi Okazaki
Comprehensive analysis of the mouse metabolome based on the transcriptome.
Genome research 2003;13(6B):1345-9.
2003: Hidenori Kiyosawa; Itaru Yamanaka; Naoki Osato; Shinji Kondo; Yoshihide Hayashizaki
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.
Genome research 2003;13(6B):1324-34.
2003: Hidemasa Bono; Ken Yagi; Takeya Kasukawa; Itoshi Nikaido; Naoko Tominaga; Rika Miki; Yosuke Mizuno; Yasuhiro Tomaru; Hitoshi Goto; Hiroyuki Nitanda; Daisuke Shimizu; Hirochika Makino; Tomoyuki Morita; Junshin Fujiyama; Takehito Sakai; Takashi Shimoji; David A Hume; Yoshihide Hayashizaki; Yasushi Okazaki
Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.
Genome research 2003;13(6B):1318-23.
2003: Koji Numata; Akio Kanai; Rintaro Saito; Shinji Kondo; Jun Adachi; Laurens G Wilming; David A Hume; Yoshihide Hayashizaki; Masaru Tomita
Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection.
Genome research 2003;13(6B):1301-6.
2003: Mihaela Zavolan; Shinji Kondo; Christian Schönbach; Jun Adachi; David A Hume; Yoshihide Hayashizaki; Terry Gaasterland
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.
Genome research 2003;13(6B):1290-300.
2003: Hidetada Shimizu; Hirokazu Taniguchi; Yoshitaka Hippo; Yoshihide Hayashizaki; Hiroyuki Aburatani; Toshihisa Ishikawa
Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12.
Gene 2003;310():17-28.
2003: Shogo Suzuki; Shinji Kondo; Yoshihide Hayashizaki
[Identification of genes by mouse genome and transcriptome analysis].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2003;48(6):747-59.
2003: Elva Diaz; Yee Hwa Yang; Todd Ferreira; Kenneth C Loh; Yasushi Okazaki; Yoshihide Hayashizaki; Marc Tessier-Lavigne; Terence P Speed; John Ngai
Analysis of gene expression in the developing mouse retina.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):5491-6.
2003: manuela gariboldi; Bernard Peissel; Alessandra Fabbri; Anna Saran; Daniela Zaffaroni; F Stefania Falvella; Monica Spinola; Jun-ichi Tanuma; Simonetta Pazzaglia; Mariateresa Mancuso; Andrea Maurichi; Cesare Bartoli; Sule Cataltepe; Gary A Silverman; Silvana Pilotti; Yoshihide Hayashizaki; Yasushi Okazaki; Tommaso A Dragani
SCCA2-like serpins mediate genetic predisposition to skin tumors.
Cancer research 2003;63(8):1871-5.
2003: Rintaro Saito; Harukazu Suzuki; Yoshihide Hayashizaki
Construction of reliable protein-protein interaction networks with a new interaction generality measure.
Bioinformatics (Oxford, England) 2003;19(6):756-63.
2003: Nicole C Walsh; Marian Cahill; piero carninci; Jun Kawai; Yasushi Okazaki; Yoshihide Hayashizaki; David A Hume; A Ian Cassady
Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene.
Gene 2003;307():111-23.
2003: Rintaro Saito; Harukazu Suzuki; Yoshihide Hayashizaki
Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality.
Biochemical and biophysical research communications 2003;301(3):633-40.
2003: Koji Kadota; Shin-Ichiro Nishimura; Hidemasa Bono; Shugo Nakamura; Yoshihide Hayashizaki; Yasushi Okazaki; Katsutoshi Takahashi
Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure.
Physiological genomics 2003;12(3):251-9.
2003: Hidemasa Bono; Takeya Kasukawa; Masaaki Furuno; Yoshihide Hayashizaki; Yasushi Okazaki
[FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones].
Seikagaku. The Journal of Japanese Biochemical Society 2003;75(2):149-52.
2003: Yoshihide Hayashizaki
Mouse Genome Encyclopedia Project.
Cold Spring Harbor symposia on quantitative biology 2003;68():195-204.
2003: Naoki Osato; Hitomi Yamada; Kouji Satoh; Hisako Ooka; Makoto Yamamoto; Kohji Suzuki; Jun Kawai; piero carninci; Yasuhiro Ohtomo; Kazuo Murakami; Kenichi Matsubara; Shoshi Kikuchi; Yoshihide Hayashizaki
Antisense transcripts with rice full-length cDNAs.
Genome biology 2003;5(1):R5.
2003: Kazuhiro Shibata; Masaki Izawa; Yoshihide Hayashizaki; Masanori Watahiki
Practical application of transcriptional sequencing for GC-rich templates.
Journal of structural and functional genomics 2003;4(1):35-9.
2003: Yoshihide Hayashizaki
RIKEN mouse genome encyclopedia.
Mechanisms of ageing and development 2003;124(1):93-102.
2002: Mutsumi Kanamori; Chikatoshi Kai; Yoshihide Hayashizaki; Harukazu Suzuki
NF-kappaB activator Act1 associates with IL-1/Toll pathway adaptor molecule TRAF6.
FEBS letters 2002;532(1-2):241-6.
2002: Erich D Jarvis; V Anne Smith; Kazuhiro Wada; Miriam V Rivas; M McElroy; Tom V Smulders; piero carninci; Yoshihide Hayashizaki; Fred S Dietrich; X Wu; Patrick McConnell; Jing Yu; P P Wang; Alexander J Hartemink; Simon Lin
A framework for integrating the songbird brain.
Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology 2002;188(11-12):961-80.
2002: Motoaki Seki; Junko Ishida; Mari Narusaka; Miki Fujita; Tokihiko Nanjo; Taishi Umezawa; Asako Kamiya; Maiko Nakajima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Kenji Akiyama; Kazuko Yamaguchi-Shinozaki; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Kazuo Shinozaki
Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray.
Functional & integrative genomics 2002;2(6):282-91.
2002: A Sakurai; Shigeo Fujimori; Hiromi Kochiwa; S Kitamura-Abe; Takanori Washio; Rintaro Saito; piero carninci; Yoshihide Hayashizaki; Masaru Tomita
On biased distribution of introns in various eukaryotes.
Gene 2002;300(1-2):89-95.
2002: Y Ozawa; S Hanaoka; Rintaro Saito; Takanori Washio; S Nakano; A Shinagawa; Masayoshi Itoh; K Shibata; piero carninci; H Konno; Jun Kawai; Yoshihide Hayashizaki; Masaru Tomita
Comprehensive sequence analysis of translation termination sites in various eukaryotes.
Gene 2002;300(1-2):79-87.
2002: Elva Diaz; Yongchao Ge; Yee Hwa Yang; Kenneth C Loh; Tito A Serafini; Yasushi Okazaki; Yoshihide Hayashizaki; Terence P Speed; John Ngai; Peter Scheiffele
Molecular analysis of gene expression in the developing pontocerebellar projection system.
Neuron 2002;36(3):417-34.
2002: Yasushi Ichikawa; Takashi Ishikawa; Shinji Takahashi; Yohei Hamaguchi; Tomoyuki Morita; Itaru Nishizuka; Shigeki Yamaguchi; Itaru Endo; Hideyuki Ike; Shinji Togo; Shigeo Oki; Hiroshi Shimada; Koji Kadota; Shugo Nakamura; Hitoshi Goto; Hiroyuki Nitanda; Susumu Satomi; Takehito Sakai; Ichiei Narita; Fumitake Gejyo; Yasuhiro Tomaru; Kentaro Shimizu; Yoshihide Hayashizaki; Yasushi Okazaki
Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method.
Biochemical and biophysical research communications 2002;296(2):497-506.
2002: Mark Stapleton; Guochun Liao; Peter Brokstein; Ling Hong; piero carninci; Toshiyuki Shiraki; Yoshihide Hayashizaki; Mark Champe; Joanne Pacleb; Ken Wan; Charles Yu; Joe Carlson; Reed George; Susan E Celniker; Gerald M Rubin
The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes.
Genome research 2002;12(8):1294-300.
2002: Hiromi Kochiwa; Ryosuke Suzuki; Takanori Washio; Rintaro Saito; Hidemasa Bono; piero carninci; Yasushi Okazaki; Rika Miki; Yoshihide Hayashizaki; Masaru Tomita
Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data.
Genome research 2002;12(8):1286-93.
2002: Motoaki Seki; Mari Narusaka; Junko Ishida; Tokihiko Nanjo; Miki Fujita; Youko Oono; Asako Kamiya; Maiko Nakajima; Akiko Enju; Tetsuya Sakurai; Masakazu Satou; Kenji Akiyama; Teruaki Taji; Kazuko Yamaguchi-Shinozaki; piero carninci; Jun Kawai; Yoshihide Hayashizaki; Kazuo Shinozaki
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray.
The Plant journal : for cell and molecular biology 2002;31(3):279-92.
2002: Shinji Ito; Toshihiko Fujimori; Yoshihide Hayashizaki; Yo-ichi Nabeshima
Identification of a novel mouse membrane-bound family 1 glycosidase-like protein, which carries an atypical active site structure.
Biochimica et biophysica acta 2002;1576(3):341-5.
2002: Naoki Osato; Masayoshi Itoh; Hideaki Konno; Shinji Kondo; Kazuhiro Shibata; piero carninci; Toshiyuki Shiraki; Akira Shinagawa; Takahiro Arakawa; Shoshi Kikuchi; Kouji Sato; Jun Kawai; Yoshihide Hayashizaki
A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs.
Genome research 2002;12(7):1127-34.
2002: Sei Komatsu; Hidenori Kiyosawa; Atsushi Yoshiki; Yasushi Okazaki; Masayasu Yoshino; Yasuhiro Tomaru; Sachihiko Watanabe; Masami Muramatsu; Moriaki Kusakabe; Yoshihide Hayashizaki
Identification of seven loci for static glucokinesis and dynamic glucokinesis in mice.
Mammalian genome : official journal of the International Mammalian Genome Society 2002;13(6):293-8.
2002: Motoaki Seki; Mari Narusaka; Asako Kamiya; Junko Ishida; Masakazu Satou; Tetsuya Sakurai; Maiko Nakajima; Akiko Enju; Kenji Akiyama; Youko Oono; Masami Muramatsu; Yoshihide Hayashizaki; Jun Kawai; piero carninci; Masayoshi Itoh; Yoshiyuki Ishii; Takahiro Arakawa; Kazuhiro Shibata; Akira Shinagawa; Kazuo Shinozaki
Functional annotation of a full-length Arabidopsis cDNA collection.
Science (New York, N.Y.) 2002;296(5565):141-5.
2002: Hideya Kawaji; Christian Schönbach; Yo Matsuo; Jun Kawai; Yasushi Okazaki; Yoshihide Hayashizaki; Hideo Matsuda
Exploration of novel motifs derived from mouse cDNA sequences.
Genome research 2002;12(3):367-78.
2002: Rintaro Saito; Harukazu Suzuki; Yoshihide Hayashizaki
Interaction generality, a measurement to assess the reliability of a protein-protein interaction.
Nucleic acids research 2002;30(5):1163-8.
2002: Yosuke Mizuno; Yusuke Sotomaru; Yukiko Katsuzawa; Tomohiro Kono; Makiko Meguro; Mitsuo Oshimura; Jun Kawai; Yasuhiro Tomaru; Hidenori Kiyosawa; Itoshi Nikaido; Hiroshi Amanuma; Yoshihide Hayashizaki; Yasushi Okazaki
Asb4, Ata3, and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray.
Biochemical and biophysical research communications 2002;290(5):1499-505.
2002: Mutsumi Kanamori; Harukazu Suzuki; Rintaro Saito; Masami Muramatsu; Yoshihide Hayashizaki
T2BP, a novel TRAF2 binding protein, can activate NF-kappaB and AP-1 without TNF stimulation.
Biochemical and biophysical research communications 2002;290(3):1108-13.
2002: Itaru Yamanaka; Hidenori Kiyosawa; Shinji Kondo; Tetsuya Saito; piero carninci; Akira Shinagawa; Katsunori Aizawa; Shiro Fukuda; Ayako Hara; Masayoshi Itoh; Jun Kawai; Kazuhiro Shibata; Takahiro Arakawa; Yoshiyuki Ishii; Yoshihide Hayashizaki
Mapping of 19032 mouse cDNAs on mouse chromosomes.
Journal of structural and functional genomics 2002;2(1):23-8.
2002: Tomoyuki Morita; Shinji Togo; Toru Kubota; Nobuyuki Kamimukai; Itaru Nishizuka; Takatoshi Kobayashi; Yasushi Ichikawa; Takashi Ishikawa; Shinji Takahashi; Kenichi Matsuo; Yasuhiro Tomaru; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Mechanism of postoperative liver failure after excessive hepatectomy investigated using a cDNA microarray.
Journal of hepato-biliary-pancreatic surgery 2002;9(3):352-9.
2002: Itaru Nishizuka; Takashi Ishikawa; Yohei Hamaguchi; Masako Kamiyama; Yasushi Ichikawa; Koji Kadota; Rika Miki; Yasuhiro Tomaru; Yosuke Mizuno; Naoko Tominaga; Rieko Yano; Hitoshi Goto; Hiroyuki Nitanda; Shinji Togo; Yasushi Okazaki; Yoshihide Hayashizaki; Hiroshi Shimada
Analysis of gene expression involved in brain metastasis from breast cancer using cDNA microarray.
Breast cancer (Tokyo, Japan) 2002;9(1):26-32.
2002: Hidemasa Bono; Takeya Kasukawa; Yoshihide Hayashizaki; Yasushi Okazaki
READ: RIKEN Expression Array Database.
Nucleic acids research 2002;30(1):211-3.
2002: Hidemasa Bono; Takeya Kasukawa; Masaaki Furuno; Yoshihide Hayashizaki; Yasushi Okazaki
FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.
Nucleic acids research 2002;30(1):116-8.
2001: Y Shibata; piero carninci; K Sato; Norihito Hayatsu; Toshiyuki Shiraki; Y Ishii; Takahiro Arakawa; A Hara; N Ohsato; M Izawa; K Aizawa; Masayoshi Itoh; Kazuhiro Shibata; Akira Shinagawa; Jun Kawai; Y Ota; S Kikuchi; N Kishimoto; Masami Muramatsu; Yoshihide Hayashizaki
Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencing.
BioTechniques 2001;31(5):1042, 1044, 1048-9.
2001: H Sakai; Takanori Washio; Rintaro Saito; A Shinagawa; Masayoshi Itoh; K Shibata; piero carninci; H Konno; Jun Kawai; Yoshihide Hayashizaki; Masaru Tomita
Correlation between sequence conservation of the 5' untranslated region and codon usage bias in Mus musculus genes.
Gene 2001;276(1-2):101-5.
2001: Harukazu Suzuki; Y Fukunishi; I Kagawa; Rintaro Saito; H Oda; T Endo; Shinji Kondo; Hidemasa Bono; Yasushi Okazaki; Yoshihide Hayashizaki
Protein-protein interaction panel using mouse full-length cDNAs.
Genome research 2001;11(10):1758-65.
2001: Shinji Kondo; Akira Shinagawa; T Saito; Hidenori Kiyosawa; Itaru Yamanaka; K Aizawa; Shiro Fukuda; A Hara; Masayoshi Itoh; Jun Kawai; Kazuhiro Shibata; Yoshihide Hayashizaki
Computational analysis of full-length mouse cDNAs compared with human genome sequences.
Mammalian genome : official journal of the International Mammalian Genome Society 2001;12(9):673-7.
2001: piero carninci; Y Shibata; Norihito Hayatsu; Masayoshi Itoh; Toshiyuki Shiraki; T Hirozane; Akira Watahiki; Kazuhiro Shibata; Hideaki Konno; Masami Muramatsu; Yoshihide Hayashizaki
Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis.
Genomics 2001;77(1-2):79-90.
2001: Y Shibata; piero carninci; Akira Watahiki; Toshiyuki Shiraki; H Konno; Masami Muramatsu; Yoshihide Hayashizaki
Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method.
BioTechniques 2001;30(6):1250-4.
2001: Y Fukunishi; Yoshihide Hayashizaki
Amino acid translation program for full-length cDNA sequences with frameshift errors.
Physiological genomics 2001;5(2):81-7.
2001: Rika Miki; Koji Kadota; Hidemasa Bono; Yosuke Mizuno; Yasuhiro Tomaru; piero carninci; Masayoshi Itoh; Kazuhiro Shibata; Jun Kawai; H Konno; S Watanabe; K Sato; Y Tokusumi; N Kikuchi; Y Ishii; Yohei Hamaguchi; Itaru Nishizuka; Hitoshi Goto; Hiroyuki Nitanda; S Satomi; A Yoshiki; M Kusakabe; Joe L DeRisi; Michael B Eisen; Vishwanath R Iyer; P O Brown; Masami Muramatsu; Hiroshi Shimada; Yasushi Okazaki; Yoshihide Hayashizaki
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2199-204.
2001: Hideaki Konno; Y Fukunishi; Kazuhiro Shibata; Masayoshi Itoh; piero carninci; Y Sugahara; Yoshihide Hayashizaki
Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library.
Genome research 2001;11(2):281-9.
2001: Y Sugahara; piero carninci; Masayoshi Itoh; K Shibata; H Konno; T Endo; M Muramatsu; Yoshihide Hayashizaki
Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries.
Gene 2001;263(1-2):93-102.
2001: Koji Kadota; Rika Miki; Hidemasa Bono; K Shimizu; Yasushi Okazaki; Yoshihide Hayashizaki
Preprocessing implementation for microarray (PRIM): an efficient method for processing cDNA microarray data.
Physiological genomics 2001;4(3):183-8.
2001: Motoaki Seki; Mari Narusaka; H Abe; M Kasuga; Kazuko Yamaguchi-Shinozaki; piero carninci; Yoshihide Hayashizaki; Kazuo Shinozaki
Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray.
The Plant cell 2001;13(1):61-72.
2000: piero carninci; Y Shibata; Norihito Hayatsu; Y Sugahara; Kazuhiro Shibata; Masayoshi Itoh; Hideaki Konno; Yasushi Okazaki; Masami Muramatsu; Yoshihide Hayashizaki
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Genome research 2000;10(10):1617-30.
2000: S Komatsu; Yasushi Okazaki; M Tateno; J Kawai; H Konno; Moriaki Kusakabe; Atsushi Yoshiki; M Muramatsu; Werner Held; Yoshihide Hayashizaki
Methylation and downregulated expression of mac25/insulin-like growth factor binding protein-7 is associated with liver tumorigenesis in SV40T/t antigen transgenic mice, screened by restriction landmark genomic scanning for methylation (RLGS-M).
Biochemical and biophysical research communications 2000;267(1):109-17.
1999: Y Sugahara; S Akiyoshi; Yasushi Okazaki; I Tanihata; Yoshihide Hayashizaki; M Nishimura
Application of the RLGS image analysis tool (RAT) to the construction of a genetic linkage map of recombinant inbred strain SMXA.
Mammalian genome : official journal of the International Mammalian Genome Society 1999;10(6):611-6.
1999: Masayoshi Itoh; T Kitsunai; J Akiyama; Kazuhiro Shibata; M Izawa; Jun Kawai; Yasuhiro Tomaru; piero carninci; Y Shibata; Y Ozawa; Masami Muramatsu; Yasushi Okazaki; Yoshihide Hayashizaki
Automated filtration-based high-throughput plasmid preparation system.
Genome research 1999;9(5):463-70.
1999: Y Mizuno; piero carninci; Yasushi Okazaki; M Tateno; J Kawai; H Amanuma; M Muramatsu; Yoshihide Hayashizaki
Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display.
Nucleic acids research 1999;27(5):1345-9.
1999: RS Pearsall; Christoph Plass; MA Romano; Michael D Garrick; H Shibata; Yoshihide Hayashizaki; Werner Held
A direct repeat sequence at the Rasgrf1 locus and imprinted expression.
Genomics 1999;55(2):194-201.
1999: piero carninci; Yoshihide Hayashizaki
High-efficiency full-length cDNA cloning.
Methods in enzymology 1999;303():19-44.
1998: N Sasaki; M Izawa; Y Sugahara; T Tanaka; Masanori Watahiki; K Ozawa; E Ohara; H Funaki; Y Yoneda; S Matsuura; M Muramatsu; Yasushi Okazaki; Yoshihide Hayashizaki
Identification of stable RNA hairpins causing band compression in transcriptional sequencing and their elimination by use of inosine triphosphate.
Gene 1998;222(1):17-23.
1998: M Mori; S Akiyoshi; Y Mizuno; H Okuizumi; Yasushi Okazaki; Yoshihide Hayashizaki; M Nishimura
Genetic profile of the SMXA recombinant inbred mouse strains revealed with restriction landmark genomic scanning.
Mammalian genome : official journal of the International Mammalian Genome Society 1998;9(9):695-709.
1998: Y Sugahara; S Akiyoshi; Yasushi Okazaki; Yoshihide Hayashizaki; I Tanihata
An automatic image analysis system for RLGS films.
Mammalian genome : official journal of the International Mammalian Genome Society 1998;9(8):643-51.
1998: M Izawa; N Sasaki; Masanori Watahiki; E Ohara; Y Yoneda; M Muramatsu; Yasushi Okazaki; Yoshihide Hayashizaki
Recognition sites of 3'-OH group by T7 RNA polymerase and its application to transcriptional sequencing.
The Journal of biological chemistry 1998;273(23):14242-6.
1998: N Sasaki; S Nagaoka; Masayoshi Itoh; M Izawa; H Konno; piero carninci; A Yoshiki; M Kusakabe; T Moriuchi; M Muramatsu; Yasushi Okazaki; Yoshihide Hayashizaki
Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones.
Genomics 1998;49(2):167-79.
1998: H Shibata; Y Yoda; R Kato; T Ueda; M Kamiya; Noriko Hiraiwa; Atsushi Yoshiki; Christoph Plass; RS Pearsall; Werner Held; M Muramatsu; H Sasaki; M Kusakabe; Yoshihide Hayashizaki
A methylation imprint mark in the mouse imprinted gene Grf1/Cdc25Mm locus shares a common feature with the U2afbp-rs gene: an association with a short tandem repeat and a hypermethylated region.
Genomics 1998;49(1):30-7.
1998: N Sasaki; M Izawa; Masanori Watahiki; K Ozawa; T Tanaka; Y Yoneda; S Matsuura; piero carninci; M Muramatsu; Yasushi Okazaki; Yoshihide Hayashizaki
Transcriptional sequencing: A method for DNA sequencing using RNA polymerase.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(7):3455-60.
1998: RS Pearsall; K Imai; H Shibata; Yoshihide Hayashizaki; Verne M Chapman; Werner Held; Christoph Plass
The Rasgrf1-repeat sequence (D9Ncvs53) maps between Mod1 and Rbp1 on mouse chromosome 9 and may define a putative imprinted region.
Mammalian genome : official journal of the International Mammalian Genome Society 1998;9(3):261-2.
1998: piero carninci; Y Nishiyama; A Westover; Masayoshi Itoh; S Nagaoka; N Sasaki; Yasushi Okazaki; M Muramatsu; Yoshihide Hayashizaki
Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(2):520-4.
1997: N Sasaki; M Izawa; M Shimojo; K Shibata; J Akiyama; Masayoshi Itoh; S Nagaoka; piero carninci; Yasushi Okazaki; T Moriuchi; M Muramatsu; S Watanabe; Yoshihide Hayashizaki
A novel control system for polymerase chain reaction using a RIKEN GS384 thermalcycler.
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(6):387-91.
1997: Yasushi Okazaki; M Muramatsu; Yoshihide Hayashizaki
[The role of the laboratory mouse and the application of RLGS to the mouse genome].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1997;42(17 Suppl):2887-96.
1997: Y Nishiyama; piero carninci; S Yoneya; Yoshihide Hayashizaki
[New approach for an analysis of full-length cDNA library].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1997;42(17 Suppl):2858-63.
1997: H Shibata; T Ueda; M Kamiya; Atsushi Yoshiki; M Kusakabe; Christoph Plass; Werner Held; S Sunahara; M Katsuki; M Muramatsu; Yoshihide Hayashizaki
An oocyte-specific methylation imprint center in the mouse U2afbp-rs/U2af1-rs1 gene marks the establishment of allele-specific methylation during preimplantation development.
Genomics 1997;44(2):171-8.
1997: Masayoshi Itoh; piero carninci; S Nagaoka; N Sasaki; Yasushi Okazaki; T Ohsumi; M Muramatsu; Yoshihide Hayashizaki
Simple and rapid preparation of plasmid template by a filtration method using microtiter filter plates.
Nucleic acids research 1997;25(6):1315-6.
1997: piero carninci; A Westover; Y Nishiyama; T Ohsumi; Masayoshi Itoh; S Nagaoka; N Sasaki; Yasushi Okazaki; M Muramatsu; C Schneider; Yoshihide Hayashizaki
High efficiency selection of full-length cDNA by improved biotinylated cap trapper.
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(1):61-6.
1997: H Okuizumi; T Ohsumi; N Sakaki; H Imoto; Y Mizuno; T Hanami; H Yamashita; M Kamiya; S Takada; A Kitamura; M Muramatsu; M Nishimura; M Mori; Y Matsuda; O Tagaya; Yasushi Okazaki; Yoshihide Hayashizaki
Linkage map of Syrian hamster with restriction landmark genomic scanning.
Mammalian genome : official journal of the International Mammalian Genome Society 1997;8(2):121-8.
1997: J Kuromitsu; H Yamashita; H Kataoka; T Takahara; M Muramatsu; T Sekine; N Okamoto; Y Furuichi; Yoshihide Hayashizaki
A unique downregulation of h2-calponin gene expression in Down syndrome: a possible attenuation mechanism for fetal survival by methylation at the CpG island in the trisomic chromosome 21.
Molecular and cellular biology 1997;17(2):707-12.
1996: H Suzuki; J Kawai; C Taga; Takeshi Yaoi; A Hara; K Hirose; Yoshihide Hayashizaki; S Watanabe
Stac, a novel neuron-specific protein with cysteine-rich and SH3 domains.
Biochemical and biophysical research communications 1996;229(3):902-9.
1996: piero carninci; C Kvam; A Kitamura; T Ohsumi; Yasushi Okazaki; Masayoshi Itoh; M Kamiya; K Shibata; N Sasaki; M Izawa; M Muramatsu; Yoshihide Hayashizaki; C Schneider
High-efficiency full-length cDNA cloning by biotinylated CAP trapper.
Genomics 1996;37(3):327-36.
1996: S Hirotsune; T Takahara; N Sasaki; H Imoto; Yasushi Okazaki; T Eki; Y Murakami; M Abe; K Furuya; M Muramatsu; Y Eto; Verne M Chapman; Yoshihide Hayashizaki
Construction of high-resolution physical maps from yeast artificial chromosomes using restriction landmark genomic scanning (RLGS).
Genomics 1996;37(1):87-95.
1996: Christoph Plass; H Shibata; I Kalcheva; L Mullins; N Kotelevtseva; J Mullins; R Kato; H Sasaki; S Hirotsune; Yasushi Okazaki; Werner Held; Yoshihide Hayashizaki; Verne M Chapman
Identification of Grf1 on mouse chromosome 9 as an imprinted gene by RLGS-M.
Nature genetics 1996;14(1):106-9.
1996: S Takada; Yasushi Okazaki; M Kamiya; T Ohsumi; O Nomura; H Okuizumi; N Sasaki; H Shibata; M Mori; M Nishimura; M Muramatsu; Yoshihide Hayashizaki; Y Matsuda
Five candidate genes for hamster cardiomyopathy did not map to the cardiomyopathy locus by FISH analysis.
DNA research : an international journal for rapid publication of reports on genes and genomes 1996;3(4):273-6.
1996: T Takahara; T Ohsumi; J Kuromitsu; K Shibata; N Sasaki; Yasushi Okazaki; H Shibata; S Sato; Atsushi Yoshiki; M Kusakabe; M Muramatsu; M Ueki; K Okuda; Yoshihide Hayashizaki
Dysfunction of the Orleans reeler gene arising from exon skipping due to transposition of a full-length copy of an active L1 sequence into the skipped exon.
Human molecular genetics 1996;5(7):989-93.
1996: H Shibata; K Yoshino; S Sunahara; Y Gondo; M Katsuki; T Ueda; M Kamiya; M Muramatsu; Y Murakami; I Kalcheva; Christoph Plass; Verne M Chapman; Yoshihide Hayashizaki
Inactive allele-specific methylation and chromatin structure of the imprinted gene U2af1-rs1 on mouse chromosome 11.
Genomics 1996;35(1):248-52.
1996: RS Pearsall; H Shibata; A Brozowska; K Yoshino; K Okuda; P J deJong; Christoph Plass; Verne M Chapman; Yoshihide Hayashizaki; Werner Held
Absence of imprinting in U2AFBPL, a human homologue of the imprinted mouse gene U2afbp-rs.
Biochemical and biophysical research communications 1996;222(1):171-7.
1996: Yasushi Okazaki; H Okuizumi; T Ohsumi; O Nomura; S Takada; M Kamiya; N Sasaki; Y Matsuda; M Nishimura; O Tagaya; M Muramatsu; Yoshihide Hayashizaki
A genetic linkage map of the Syrian hamster and localization of cardiomyopathy locus on chromosome 9qa2.1-b1 using RLGS spot-mapping.
Nature genetics 1996;13(1):87-90.
1995: J Kuromitsu; H Kataoka; H Yamashita; M Muramatsu; Y Furuichi; T Sekine; Yoshihide Hayashizaki
Reproducible alterations of DNA methylation at a specific population of CpG islands during blast formation of peripheral blood lymphocytes.
DNA research : an international journal for rapid publication of reports on genes and genomes 1995;2(6):263-7.
1995: H Okuizumi; Yasushi Okazaki; T Ohsumi; T Hanami; Y Mizuno; M Muramatsu; Yoshihide Hayashizaki; Christoph Plass; Verne M Chapman
A single gel analysis of 575 dominant and codominant restriction landmark genomic scanning loci in mice interspecific backcross progeny.
Electrophoresis 1995;16(2):253-60.
1995: H Okuizumi; Yasushi Okazaki; T Ohsumi; Yoshihide Hayashizaki; Christoph Plass; Verne M Chapman
Genetic mapping of restriction landmark genomic scanning loci in the mouse.
Electrophoresis 1995;16(2):233-40.
1995: S Watanabe; J Kawai; S Hirotsune; H Suzuki; K Hirose; C Taga; N Ozawa; S Fushiki; Yoshihide Hayashizaki
Accessibility to tissue-specific genes from methylation profiles of mouse brain genomic DNA.
Electrophoresis 1995;16(2):218-26.
1995: H Shibata; K Yoshino; M Muramatsu; Christoph Plass; Verne M Chapman; Yoshihide Hayashizaki
The use of restriction landmark genomic scanning to scan the mouse genome for endogenous loci with imprinted patterns of methylation.
Electrophoresis 1995;16(2):210-7.
1995: T Ohsumi; Yasushi Okazaki; S Hirotsune; H Shibata; M Muramatsu; H Suzuki; C Taga; S Watanabe; Yoshihide Hayashizaki
A spot cloning method for restriction landmark genomic scanning.
Electrophoresis 1995;16(2):203-9.
1995: Yasushi Okazaki; H Okuizumi; N Sasaki; T Ohsumi; J Kuromitsu; N Hirota; M Muramatsu; Yoshihide Hayashizaki
An expanded system of restriction landmark genomic scanning (RLGS Ver. 1.8).
Electrophoresis 1995;16(2):197-202.
1995: Christoph Plass; J Kawai; I Kalcheva; L Davis; S Watanabe; Yoshihide Hayashizaki; Verne M Chapman
Comparative analysis of mouse NotI linking clones with mouse and human genomic sequences and transcripts.
DNA research : an international journal for rapid publication of reports on genes and genomes 1995;2(1):27-35.
1994: Yoshihide Hayashizaki; S Hirotsune; Yasushi Okazaki; H Shibata; A Akasako; M Muramatsu; J Kawai; T Hirasawa; S Watanabe; T Shiroishi
A genetic linkage map of the mouse using restriction landmark genomic scanning (RLGS).
Genetics 1994;138(4):1207-38.
1994: S Hirotsune; K Hirose; H Kataoka; J Kuromitsu; Y Furuichi; M Muramatsu; Y Matsuda; Yoshihide Hayashizaki
Spot mapping on the standard profile of restriction landmark genomic scanning (RLGS) of sorted chromosome 20 using methylation-insensitive enzyme.
Genomics 1994;24(3):593-6.
1994: J Kawai; K Hirose; S Fushiki; S Hirotsune; N Ozawa; A Hara; Yoshihide Hayashizaki; S Watanabe
Comparison of DNA methylation patterns among mouse cell lines by restriction landmark genomic scanning.
Molecular and cellular biology 1994;14(11):7421-7.
1994: M Tada; T Tada; N Takagi; Yoshihide Hayashizaki; H Shibata; S Hirotsune; Y Okazaki; M Muramatsu; H Sasaki; T Ueda
Localization of mouse imprinted gene U2af1-rs1 to A3.2-4 band of chromosome 11 by FISH.
Mammalian genome : official journal of the International Mammalian Genome Society 1994;5(10):655.
1994: N Sasaki; Yoshihide Hayashizaki; M Muramatsu; Y Matsuda; Y Ando; T Kuramoto; T Serikawa; T Azuma; A Naito; T Agui
The gene responsible for LEC hepatitis, located on rat chromosome 16, is the homolog to the human Wilson disease gene.
Biochemical and biophysical research communications 1994;202(1):512-8.
1994: Yoshihide Hayashizaki; H Shibata; S Hirotsune; H Sugino; Yasushi Okazaki; N Sasaki; K Hirose; H Imoto; H Okuizumi; M Muramatsu
Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method.
Nature genetics 1994;6(1):33-40.
1994: H Imoto; S Hirotsune; M Muramatsu; K Okuda; O Sugimoto; Verne M Chapman; Yoshihide Hayashizaki
Direct determination of NotI cleavage sites in the genomic DNA of adult mouse kidney and human trophoblast using whole-range restriction landmark genomic scanning.
DNA research : an international journal for rapid publication of reports on genes and genomes 1994;1(5):239-43.
1994: H Okuizumi; Y Okazaki; N Sasaki; M Muramatsu; K Nakashima; K Fan; H Tano; K Ohba; Yoshihide Hayashizaki
Application of the RLGS method to large-size genomes using a restriction trapper.
DNA research : an international journal for rapid publication of reports on genes and genomes 1994;1(2):99-102.
1993: J Kawai; S Hirotsune; K Hirose; S Fushiki; S Watanabe; Yoshihide Hayashizaki
Methylation profiles of genomic DNA of mouse developmental brain detected by restriction landmark genomic scanning (RLGS) method.
Nucleic acids research 1993;21(24):5604-8.
1993: Yoshihide Hayashizaki; S Hirotsune; Y Okazaki; Izuho Hatada; H Shibata; J Kawai; K Hirose; S Watanabe; S Fushiki; S Wada
Restriction landmark genomic scanning method and its various applications.
Electrophoresis 1993;14(4):251-8.
1993: Yoshihide Hayashizaki; Izuho Hatada; S Hirotsune; Tsunehiro Mukai
[Genomic scanning method--restriction landmark genomic scanning].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1993;38(3):573-80.
1993: Yoshihide Hayashizaki; Izuho Hatada; S Hirotsune; Y Okazaki; H Shibata; T Mukai
[Restriction landmark genomic scanning (RLGS) method and its application].
Seikagaku. The Journal of Japanese Biochemical Society 1993;65(2):109-15.
1992: Yoshihide Hayashizaki; S Hirotsune; Izuho Hatada; S Tamatsukuri; C Miyamoto; Y Furuichi; Tsunehiro Mukai
A new method for constructing NotI linking and boundary libraries using a restriction trapper.
Genomics 1992;14(3):733-9.
1991: Izuho Hatada; Yoshihide Hayashizaki; S Hirotsune; H Komatsubara; Tsunehiro Mukai
A genomic scanning method for higher organisms using restriction sites as landmarks.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(21):9523-7.
1987: S Watanabe; Yoshihide Hayashizaki; Y Endo; M Hirono; N Takimoto; M Tamaki; H Teraoka; K Miyai; K Matsubara
Production of human thyroid-stimulating hormone in Chinese hamster ovary cells.
Biochemical and biophysical research communications 1987;149(3):1149-55.