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Yoshihide Hayashizaki

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Oligonucleotide Array Sequence Analysis

Genes & Molecular Sequences

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Publications

TOP 3
Ito Fuyu; Usui Kengo; Kawahara Daigo; Suenaga Atsushi; Maki Tei; Kidoaki Satoru; Suzuki Harukazu; Taiji Makoto; Itoh Masayoshi; Hayashizaki Yoshihide; Matsuda Takehisa
Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment.
Goroncy Alexander K; Koshiba Seizo; Tochio Naoya; Tomizawa Tadashi; Sato Manami; Inoue Makato; Watanabe Satoru; Hayashizaki Yoshihide; Tanaka Akiko; Kigawa Takanori; Yokoyama Shigeyuki
NMR solution structures of actin depolymerizing factor homology domains.
Lassmann Timo; Hayashizaki Yoshihide; Daub Carsten O
TagDust--a program to eliminate artifacts from next generation sequencing data.

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All Publications

2010: Ito Fuyu; Usui Kengo; Kawahara Daigo; Suenaga Atsushi; Maki Tei; Kidoaki Satoru; Suzuki Harukazu; Taiji Makoto; Itoh Masayoshi; Hayashizaki Yoshihide; Matsuda Takehisa
Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment.
Biomaterials 2010;31(1):58-66.
2009: Goroncy Alexander K; Koshiba Seizo; Tochio Naoya; Tomizawa Tadashi; Sato Manami; Inoue Makato; Watanabe Satoru; Hayashizaki Yoshihide; Tanaka Akiko; Kigawa Takanori; Yokoyama Shigeyuki
NMR solution structures of actin depolymerizing factor homology domains.
Protein science : a publication of the Protein Society 2009;18(11):2384-92.
2009: Lassmann Timo; Hayashizaki Yoshihide; Daub Carsten O
TagDust--a program to eliminate artifacts from next generation sequencing data.
Bioinformatics (Oxford, England) 2009;25(21):2839-40.
2009: Hashimoto Takehiro; de Hoon Michiel J L; Grimmond Sean M; Daub Carsten O; Hayashizaki Yoshihide; Faulkner Geoffrey J
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.
Bioinformatics (Oxford, England) 2009;25(19):2613-4.
2009: Maida Yoshiko; Yasukawa Mami; Furuuchi Miho; Lassmann Timo; Possemato Richard; Okamoto Naoko; Kasim Vivi; Hayashizaki Yoshihide; Hahn William C; Masutomi Kenkichi
An RNA-dependent RNA polymerase formed by TERT and the RMRP RNA.
Nature 2009;461(7261):230-5.
2009: Mitani Yasumasa; Lezhava Alexander; Sakurai Aki; Horikawa Akina; Nagakura Makoto; Hayashizaki Yoshihide; Ishikawa Toshihisa
Rapid and cost-effective SNP detection method: application of SmartAmp2 to pharmacogenomics research.
Pharmacogenomics 2009;10(7):1187-97.
2009: Taft Ryan J; Glazov Evgeny A; Lassmann Timo; Hayashizaki Yoshihide; Carninci Piero; Mattick John S
Small RNAs derived from snoRNAs.
RNA (New York, N.Y.) 2009;15(7):1233-40.
2009: Toyoda Yu; Sakurai Aki; Mitani Yasumasa; Nakashima Masahiro; Yoshiura Koh-ichiro; Nakagawa Hiroshi; Sakai Yasuo; Ota Ikuko; Lezhava Alexander; Hayashizaki Yoshihide; Niikawa Norio; Ishikawa Toshihisa
Earwax, osmidrosis, and breast cancer: why does one SNP (538G>A) in the human ABC transporter ABCC11 gene determine earwax type?
The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2009;23(6):2001-13.
2009: Kimura Yasumasa; Oguchi-Katayama Atsuko; Kawai Yuki; Naito Kana; Mitani Yasumasa; Morlighem Jean-Etienne; Hayashizaki Yoshihide; Lezhava Alexander
Tail variation of the folding primer affects the SmartAmp2 process differently.
Biochemical and biophysical research communications 2009;383(4):455-9.
2009: Usui Kengo; Maki Tei; Ito Fuyu; Suenaga Atsushi; Kidoaki Satoru; Itoh Masayoshi; Taiji Makoto; Matsuda Takehisa; Hayashizaki Yoshihide; Suzuki Harukazu
Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.
Protein science : a publication of the Protein Society 2009;18(5):960-9.
2009: Taft Ryan J; Glazov Evgeny A; Cloonan Nicole; Simons Cas; Stephen Stuart; Faulkner Geoffrey J; Lassmann Timo; Forrest Alistair R R; Grimmond Sean M; Schroder Kate; Irvine Katharine; Arakawa Takahiro; Nakamura Mari; Kubosaki Atsutaka; Hayashida Kengo; Kawazu Chika; Murata Mitsuyoshi; Nishiyori Hiromi; Fukuda Shiro; Kawai Jun; Daub Carsten O; Hume David A; Suzuki Harukazu; Orlando Valerio; Carninci Piero; Hayashizaki Yoshihide; Mattick John S
Tiny RNAs associated with transcription start sites in animals.
Nature genetics 2009;41(5):572-8.
2009: Faulkner Geoffrey J; Kimura Yasumasa; Daub Carsten O; Wani Shivangi; Plessy Charles; Irvine Katharine M; Schroder Kate; Cloonan Nicole; Steptoe Anita L; Lassmann Timo; Waki Kazunori; Hornig Nadine; Arakawa Takahiro; Takahashi Hazuki; Kawai Jun; Forrest Alistair R R; Suzuki Harukazu; Hayashizaki Yoshihide; Hume David A; Orlando Valerio; Grimmond Sean M; Carninci Piero
The regulated retrotransposon transcriptome of mammalian cells.
Nature genetics 2009;41(5):563-71.
2009: Ogawa Chihiro; Usui Kengo; Ito Fuyu; Itoh Masayoshi; Hayashizaki Yoshihide; Suzuki Harukazu
Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly.
The Journal of biological chemistry 2009;284(21):14609-17.
2009: Brinkmeier Michelle L; Davis Shannon W; Carninci Piero; MacDonald James W; Kawai Jun; Ghosh Debashis; Hayashizaki Yoshihide; Lyons Robert H; Camper Sally A
Discovery of transcriptional regulators and signaling pathways in the developing pituitary gland by bioinformatic and genomic approaches.
Genomics 2009;93(5):449-60.
2009: Davis Shannon W; Potok Mary Anne; Brinkmeier Michelle L; Carninci Piero; Lyons Robert H; MacDonald James W; Fleming Michelle T; Mortensen Amanda H; Egashira Noboru; Ghosh Debashis; Steel Karen P; Osamura Robert Y; Hayashizaki Yoshihide; Camper Sally A
Genetics, gene expression and bioinformatics of the pituitary gland.
Hormone research 2009;71 Suppl 2():101-15.
2009: Aomori Tohru; Yamamoto Koujirou; Oguchi-Katayama Atsuko; Kawai Yuki; Ishidao Takefumi; Mitani Yasumasa; Kogo Yasushi; Lezhava Alexander; Fujita Yukiyoshi; Obayashi Kyoko; Nakamura Katsunori; Kohnke Hugo; Wadelius Mia; Ekström Lena; Skogastierna Cristine; Rane Anders; Kurabayashi Masahiko; Murakami Masami; Cizdziel Paul E; Hayashizaki Yoshihide; Horiuchi Ryuya
Rapid single-nucleotide polymorphism detection of cytochrome P450 (CYP2C9) and vitamin K epoxide reductase (VKORC1) genes for the warfarin dose adjustment by the SMart-amplification process version 2.
Clinical chemistry 2009;55(4):804-12.
2009: Shimizu Tetsuya; Togo Shinji; Kumamoto Takahumi; Makino Hirochika; Morita Tomoyuki; Tanaka Kuniya; Kubota Toru; Ichikawa Yasushi; Nagasima Youji; Okazaki Yasushi; Hayashizaki Yoshihide; Shimada Hiroshi
Gene expression during liver regeneration after partial hepatectomy in mice lacking type 1 tumor necrosis factor receptor.
The Journal of surgical research 2009;152(2):178-88.
2009: Tomaru Yasuhiro; Nakanishi Misato; Miura Hisashi; Kimura Yasumasa; Ohkawa Hiroki; Ohta Yusuke; Hayashizaki Yoshihide; Suzuki Masanori
Identification of an inter-transcription factor regulatory network in human hepatoma cells by Matrix RNAi.
Nucleic acids research 2009;37(4):1049-60.
2009: Miura Hisashi; Tomaru Yasuhiro; Nakanishi Misato; Kondo Shinji; Hayashizaki Yoshihide; Suzuki Masanori
Identification of DNA regions and a set of transcriptional regulatory factors involved in transcriptional regulation of several human liver-enriched transcription factor genes.
Nucleic acids research 2009;37(3):778-92.
2009: Valen Eivind; Pascarella Giovanni; Chalk Alistair; Maeda Norihiro; Kojima Miki; Kawazu Chika; Murata Mitsuyoshi; Nishiyori Hiromi; Lazarevic Dejan; Motti Dario; Marstrand Troels Torben; Tang Man-Hung Eric; Zhao Xiaobei; Krogh Anders; Winther Ole; Arakawa Takahiro; Kawai Jun; Wells Christine; Daub Carsten; Harbers Matthias; Hayashizaki Yoshihide; Gustincich Stefano; Sandelin Albin; Carninci Piero
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.
Genome research 2009;19(2):255-65.
2009: Hoat Trinh Xuan; Bertin Nicolas; Ninomiya Noriko; Fukuda Shiro; Usui Kengo; Kawai Jun; Hayashizaki Yoshihide; Suzuki Harukazu
Development of a high-throughput method for the systematic identification of human proteins nuclear translocation potential.
BMC cell biology 2009;10():69.
2009: Lezhava Alexander; Hayashizaki Yoshihide
Detection of SNP by the isothermal smart amplification method.
Methods in molecular biology (Clifton, N.J.) 2009;578():437-51.
2009: Balwierz Piotr J; Carninci Piero; Daub Carsten O; Kawai Jun; Hayashizaki Yoshihide; Van Belle Werner; Beisel Christian; van Nimwegen Erik
Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.
Genome biology 2009;10(7):R79.
2009: Kawaura Kanako; Mochida Keiichi; Enju Akiko; Totoki Yasushi; Toyoda Atsushi; Sakaki Yoshiyuki; Kai Chikatoshi; Kawai Jun; Hayashizaki Yoshihide; Seki Motoaki; Shinozaki Kazuo; Ogihara Yasunari
Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns.
BMC genomics 2009;10():271.
2009: Kawaji Hideya; Hayashizaki Yoshihide; Daub Carsten O
SDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes.
BMC bioinformatics 2009;10():133.
2009: Kubosaki Atsutaka; Tomaru Yasuhiro; Tagami Michihira; Arner Erik; Miura Hisashi; Suzuki Takahiro; Suzuki Masanori; Suzuki Harukazu; Hayashizaki Yoshihide
Genome-wide investigation of in vivo EGR-1 binding sites in monocytic differentiation.
Genome biology 2009;10(4):R41.
2009: Kawaji Hideya; Severin Jessica; Lizio Marina; Waterhouse Andrew; Katayama Shintaro; Irvine Katharine M; Hume David A; Forrest Alistair R R; Suzuki Harukazu; Carninci Piero; Hayashizaki Yoshihide; Daub Carsten O
The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
Genome biology 2009;10(4):R40.
2009: Mar Jessica C; Kimura Yasumasa; Schroder Kate; Irvine Katharine M; Hayashizaki Yoshihide; Suzuki Harukazu; Hume David; Quackenbush John
Data-driven normalization strategies for high-throughput quantitative RT-PCR.
BMC bioinformatics 2009;10():110.
2009: Severin Jessica; Waterhouse Andrew M; Kawaji Hideya; Lassmann Timo; van Nimwegen Erik; Balwierz Piotr J; de Hoon Michiel Jl; Hume David A; Carninci Piero; Hayashizaki Yoshihide; Suzuki Harukazu; Daub Carsten O; Forrest Alistair Rr
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions.
Genome biology 2009;10(4):R39.
2009: Akalin Altuna; Fredman David; Arner Erik; Dong Xianjun; Bryne Jan Christian; Suzuki Harukazu; Daub Carsten O; Hayashizaki Yoshihide; Lenhard Boris
Transcriptional features of genomic regulatory blocks.
Genome biology 2009;10(4):R38.
2009: Fraser James; Rousseau Mathieu; Shenker Solomon; Ferraiuolo Maria A; Hayashizaki Yoshihide; Blanchette Mathieu; Dostie Josée
Chromatin conformation signatures of cellular differentiation.
Genome biology 2009;10(4):R37.
2009: Seki Motoaki; Kamiya Asako; Carninci Piero; Hayashizaki Yoshihide; Shinozaki Kazuo
Generation of full-length cDNA libraries: focus on plants.
Methods in molecular biology (Clifton, N.J.) 2009;533():49-68.
2009: Harada Masako; Hayashizaki Yoshihide
Preparation of full-length cDNA libraries: focus on metazoans.
Methods in molecular biology (Clifton, N.J.) 2009;533():69-107.
2009: Nakamura Shota; Yang Cheng-Song; Sakon Naomi; Ueda Mayo; Tougan Takahiro; Yamashita Akifumi; Goto Naohisa; Takahashi Kazuo; Yasunaga Teruo; Ikuta Kazuyoshi; Mizutani Tetsuya; Okamoto Yoshiko; Tagami Michihira; Morita Ryoji; Maeda Norihiro; Kawai Jun; Hayashizaki Yoshihide; Nagai Yoshiyuki; Horii Toshihiro; Iida Tetsuya; Nakaya Takaaki
Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach.
PloS one 2009;4(1):e4219.
2008: Nakamura Shota; Maeda Norihiro; Miron Ionut Mihai; Yoh Myonsun; Izutsu Kaori; Kataoka Chidoh; Honda Takeshi; Yasunaga Teruo; Nakaya Takaaki; Kawai Jun; Hayashizaki Yoshihide; Horii Toshihiro; Iida Tetsuya
Metagenomic diagnosis of bacterial infections.
Emerging infectious diseases 2008;14(11):1784-6.
2008: Taylor Martin S; Massingham Tim; Hayashizaki Yoshihide; Carninci Piero; Goldman Nick; Semple Colin A M
Rapidly evolving human promoter regions.
Nature genetics 2008;40(11):1262-3; author reply 1263-4.
2008: Tatsumi Kenji; Mitani Yasumasa; Watanabe Jun; Takakura Hideki; Hoshi Kanako; Kawai Yuki; Kikuchi Takeshi; Kogo Yasushi; Oguchi-Katayama Atsuko; Tomaru Yasuhiro; Kanamori Hajime; Baba Masaru; Ishidao Takefumi; Usui Kengo; Itoh Masayoshi; Cizdziel Paul E; Lezhava Alexander; Ueda Michio; Ichikawa Yasushi; Endo Itaru; Togo Shinji; Shimada Hiroshi; Hayashizaki Yoshihide
Rapid screening assay for KRAS mutations by the modified smart amplification process.
The Journal of molecular diagnostics : JMD 2008;10(6):520-6.
2008: Shindo Yoichiro; Miura Hirohito; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide; Ninomiya Yuzo; Hino Akihiro; Kanda Tomomasa; Kusakabe Yuko
G alpha14 is a candidate mediator of sweet/umami signal transduction in the posterior region of the mouse tongue.
Biochemical and biophysical research communications 2008;376(3):504-8.
2008: Li Hua; Koshiba Seizo; Hayashi Fumiaki; Tochio Naoya; Tomizawa Tadashi; Kasai Takuma; Yabuki Takashi; Motoda Yoko; Harada Takushi; Watanabe Satoru; Inoue Makoto; Hayashizaki Yoshihide; Tanaka Akiko; Kigawa Takanori; Yokoyama Shigeyuki
Structure of the C-terminal phosphotyrosine interaction domain of Fe65L1 complexed with the cytoplasmic tail of amyloid precursor protein reveals a novel peptide binding mode.
The Journal of biological chemistry 2008;283(40):27165-78.
2008: Manabe Ri-ichiroh; Tsutsui Ko; Yamada Tomiko; Kimura Mina; Nakano Itsuko; Shimono Chisei; Sanzen Noriko; Furutani Yutaka; Fukuda Tomohiko; Oguri Yasuko; Shimamoto Keiko; Kiyozumi Daiji; Sato Yuya; Sado Yoshikazu; Senoo Haruki; Yamashina Shohei; Fukuda Shiro; Kawai Jun; Sugiura Nobuo; Kimata Koji; Hayashizaki Yoshihide; Sekiguchi Kiyotoshi
Transcriptome-based systematic identification of extracellular matrix proteins.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(35):12849-54.
2008: Takayama Kenichi; Horie-Inoue Kuniko; Ikeda Kazuhiro; Urano Tomohiko; Murakami Kayoko; Hayashizaki Yoshihide; Ouchi Yasuyoshi; Inoue Satoshi
FOXP1 is an androgen-responsive transcription factor that negatively regulates androgen receptor signaling in prostate cancer cells.
Biochemical and biophysical research communications 2008;374(2):388-93.
2008: Nagata Takashi; Suzuki Sakura; Endo Ryuta; Shirouzu Mikako; Terada Takaho; Inoue Makoto; Kigawa Takanori; Kobayashi Naohiro; Güntert Peter; Tanaka Akiko; Hayashizaki Yoshihide; Muto Yutaka; Yokoyama Shigeyuki
The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition.
Nucleic acids research 2008;36(14):4754-67.
2008: Tochitani Shiro; Hayashizaki Yoshihide
Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation.
Biochemical and biophysical research communications 2008;372(4):691-6.
2008: Maeda Norihiro; Nishiyori Hiromi; Nakamura Mari; Kawazu Chika; Murata Mitsuyoshi; Sano Hiromi; Hayashida Kengo; Fukuda Shiro; Tagami Michihira; Hasegawa Akira; Murakami Kayoko; Schroder Kate; Irvine Katharine; Hume David; Hayashizaki Yoshihide; Carninci Piero; Suzuki Harukazu
Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.
BioTechniques 2008;45(1):95-7.
2008: Kawai Yuki; Kikuchi Takeshi; Mitani Yasumasa; Kogo Yasushi; Itoh Masayoshi; Usui Kengo; Kanamori Hajime; Kaiho Ai; Takakura Hideki; Hoshi Kanako; Cizdziel Paul E; Hayashizaki Yoshihide
Sensitive detection of EGFR mutations using a competitive probe to suppress background in the SMart Amplification Process.
Biologicals : journal of the International Association of Biological Standardization 2008;36(4):234-8.
2008: Kumamoto Takafumi; Togo Shinji; Ishibe Atsushi; Morioka Daisuke; Watanabe Kazuteru; Takahashi Takuji; Shimizu Tetsuya; Matsuo Ken-ichi; Kubota Toru; Tanaka Kuniya; Nagashima Yoji; Kawai Jun; Hayashizaki Yoshihide; Shimada Hiroshi
Role of nitric oxide synthesized by nitric oxide synthase 2 in liver regeneration.
Liver international : official journal of the International Association for the Study of the Liver 2008;28(6):865-77.
2008: Kuwasako Kanako; Takahashi Mari; Tochio Naoya; Abe Chikage; Tsuda Kengo; Inoue Makoto; Terada Takaho; Shirouzu Mikako; Kobayashi Naohiro; Kigawa Takanori; Taguchi Seiichi; Tanaka Akiko; Hayashizaki Yoshihide; Güntert Peter; Muto Yutaka; Yokoyama Shigeyuki
Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode.
Biochemistry 2008;47(24):6437-50.
2008: Carninci Piero; Yasuda Jun; Hayashizaki Yoshihide
Multifaceted mammalian transcriptome.
Current opinion in cell biology 2008;20(3):274-80.
2008: Nakanishi Misato; Tomaru Yasuhiro; Miura Hisashi; Hayashizaki Yoshihide; Suzuki Masanori
Identification of transcriptional regulatory cascades in retinoic acid-induced growth arrest of HepG2 cells.
Nucleic acids research 2008;36(10):3443-54.
2008: Omi Natsue; Kiyokawa Etsuko; Matsuda Michiyuki; Kinoshita Kazuo; Yamada Shuichi; Yamada Kazumi; Matsushima Yoshibumi; Wang Yun; Kawai Jun; Suzuki Masanori; Hayashizaki Yoshihide; Hiai Hiroshi
Mutation of Dock5, a member of the guanine exchange factor Dock180 superfamily, in the rupture of lens cataract mouse.
Experimental eye research 2008;86(5):828-34.
2008: de Hoon Michiel; Hayashizaki Yoshihide
Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference.
BioTechniques 2008;44(5):627-8, 630, 632.
2008: Ichikawa Manabu; Okamura-Oho Yuko; Shimokawa Kazuro; Kondo Shinji; Nakamura Sakiko; Yokota Hideo; Himeno Ryutaro; Lesch Klaus-Peter; Hayashizaki Yoshihide
Expression analysis for inverted effects of serotonin transporter inactivation.
Biochemical and biophysical research communications 2008;368(1):43-9.
2008: Faulkner Geoffrey J; Forrest Alistair R R; Chalk Alistair M; Schroder Kate; Hayashizaki Yoshihide; Carninci Piero; Hume David A; Grimmond Sean M
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
Genomics 2008;91(3):281-8.
2008: Kawaji Hideya; Hayashizaki Yoshihide
Exploration of small RNAs.
PLoS genetics 2008;4(1):e22.
2008: Frith Martin C; Valen Eivind; Krogh Anders; Hayashizaki Yoshihide; Carninci Piero; Sandelin Albin
A code for transcription initiation in mammalian genomes.
Genome research 2008;18(1):1-12.
2008: Kawaji Hideya; Hayashizaki Yoshihide
Genome annotation.
Methods in molecular biology (Clifton, N.J.) 2008;452():125-39.
2008: Kawaji Hideya; Nakamura Mari; Takahashi Yukari; Sandelin Albin; Katayama Shintaro; Fukuda Shiro; Daub Carsten O; Kai Chikatoshi; Kawai Jun; Yasuda Jun; Carninci Piero; Hayashizaki Yoshihide
Hidden layers of human small RNAs.
BMC genomics 2008;9():157.
2008: Suzuki Takahiro; Kondo Shinji; Wakayama Teruhiko; Cizdziel Paul E; Hayashizaki Yoshihide
Genome-wide analysis of abnormal H3K9 acetylation in cloned mice.
PloS one 2008;3(4):e1905.
2008: Nagashima Takeshi; Suzuki Takahiro; Kondo Shinji; Kuroki Yoko; Takahashi Kaoru; Ide Kaori; Yumoto Noriko; Hasegawa Aki; Toyoda Tetsuro; Kojima Toshio; Konagaya Akihiko; Suzuki Harukazu; Hayashizaki Yoshihide; Sakaki Yoshiyuki; Hatakeyama Mariko
Integrative genome-wide expression analysis bears evidence of estrogen receptor-independent transcription in heregulin-stimulated MCF-7 cells.
PloS one 2008;3(3):e1803.
2008: Yasuda Jun; Hayashizaki Yoshihide
The RNA continent.
Advances in cancer research 2008;99():77-112.
2007: Frith Martin C; Carninci Piero; Kai Chikatoshi; Kawai Jun; Bailey Timothy L; Hayashizaki Yoshihide; Mattick John S
Splicing bypasses 3' end formation signals to allow complex gene architectures.
Gene 2007;403(1-2):188-93.
2007: Watanabe Jun; Mitani Yasumasa; Kawai Yuki; Kikuchi Takeshi; Kogo Yasushi; Oguchi-Katayama Atsuko; Kanamori Hajime; Usui Kengo; Itoh Masayoshi; Cizdziel Paul E; Lezhava Alexander; Tatsumi Kenji; Ichikawa Yasushi; Togo Shinji; Shimada Hiroshi; Hayashizaki Yoshihide
Use of a competitive probe in assay design for genotyping of the UGT1A1 *28 microsatellite polymorphism by the smart amplification process.
BioTechniques 2007;43(4):479-84.
2007: Hayashizaki Yoshihide
[New phase of the transcriptome analysis]
[Rinsho ketsueki] The Japanese journal of clinical hematology 2007;48(10):1277-80.
2007: Kawai Jun; Carninci Piero; Hayashizaki Yoshihide
Transcriptomics resources for functional genomics.
Briefings in functional genomics & proteomics 2007;6(3):171-9.
2007: Hoshi Kanako; Takakura Hideki; Mitani Yasumasa; Tatsumi Kenji; Momiyama Nobuyoshi; Ichikawa Yasushi; Togo Shinji; Miyagi Toru; Kawai Yuki; Kogo Yasushi; Kikuchi Takeshi; Kato Chiaki; Arakawa Takahiro; Uno Syuji; Cizdziel Paul E; Lezhava Alexander; Ogawa Noburou; Hayashizaki Yoshihide; Shimada Hiroshi
Rapid detection of epidermal growth factor receptor mutations in lung cancer by the SMart-Amplification Process.
Clinical cancer research : an official journal of the American Association for Cancer Research 2007;13(17):4974-83.
2007: Doi-Katayama Yukiko; Hayashi Fumiaki; Inoue Makoto; Yabuki Takashi; Aoki Masaaki; Seki Eiko; Matsuda Takayoshi; Kigawa Takanori; Yoshida Mayumi; Shirouzu Mikako; Terada Takaho; Hayashizaki Yoshihide; Yokoyama Shigeyuki; Hirota Hiroshi
Solution structure of the general transcription factor 2I domain in mouse TFII-I protein.
Protein science : a publication of the Protein Society 2007;16(8):1788-92.
2007: Baxter Laura L; Hsu Benjamin J; Umayam Lowell; Wolfsberg Tyra G; Larson Denise M; Frith Martin C; Kawai Jun; Hayashizaki Yoshihide; Carninci Piero; Pavan William J
Informatic and genomic analysis of melanocyte cDNA libraries as a resource for the study of melanocyte development and function.
Pigment cell research / sponsored by the European Society for Pigment Cell Research and the International Pigment Cell Society 2007;20(3):201-9.
2007: Nakamura Yoshihiro; Umehara Takashi; Hamana Hiroaki; Hayashizaki Yoshihide; Inoue Makoto; Kigawa Takanori; Shirouzu Mikako; Terada Takaho; Tanaka Akiko; Padmanabhan Balasundaram; Yokoyama Shigeyuki
Crystal structure analysis of the PHD domain of the transcription co-activator Pygopus.
Journal of molecular biology 2007;370(1):80-92.
2007: Sandelin Albin; Carninci Piero; Lenhard Boris; Ponjavic Jasmina; Hayashizaki Yoshihide; Hume David A
Mammalian RNA polymerase II core promoters: insights from genome-wide studies.
Nature reviews. Genetics 2007;8(6):424-36.
2007: Sugahara Tetsuo; Yamashita Yzumi; Shinomi Masahito; Yamanoha Banri; Iseki Hiroyoshi; Takeda Akihiko; Okazaki Yasushi; Hayashizaki Yoshihide; Kawai Kenji; Suemizu Hiroshi; Andoh Toshiwo
Isolation of a novel mouse gene, mSVS-1/SUSD2, reversing tumorigenic phenotypes of cancer cells in vitro.
Cancer science 2007;98(6):900-8.
2007: Yoneyama Misao; Tochio Naoya; Umehara Takashi; Koshiba Seizo; Inoue Makoto; Yabuki Takashi; Aoki Masaaki; Seki Eiko; Matsuda Takayoshi; Watanabe Satoru; Tomo Yasuko; Nishimura Yuji; Harada Takushi; Terada Takaho; Shirouzu Mikako; Hayashizaki Yoshihide; Ohara Osamu; Tanaka Akiko; Kigawa Takanori; Yokoyama Shigeyuki
Structural and functional differences of SWIRM domain subtypes.
Journal of molecular biology 2007;369(1):222-38.
2007: Purmann Antje; Toedling Joern; Schueler Markus; Carninci Piero; Lehrach Hans; Hayashizaki Yoshihide; Huber Wolfgang; Sperling Silke
Genomic organization of transcriptomes in mammals: Coregulation and cofunctionality.
Genomics 2007;89(5):580-7.
2007: Carninci Piero; Hayashizaki Yoshihide
Noncoding RNA transcription beyond annotated genes.
Current opinion in genetics & development 2007;17(2):139-44.
2007: Ogawa Chihiro; Usui Kengo; Aoki Makoto; Ito Fuyu; Itoh Masayoshi; Kai Chikatoshi; Kanamori-Katayama Mutsumi; Hayashizaki Yoshihide; Suzuki Harukazu
Gemin2 plays an important role in stabilizing the survival of motor neuron complex.
The Journal of biological chemistry 2007;282(15):11122-34.
2007: Sasaki Daisuke; Kondo Shinji; Maeda Norihiro; Gingeras Thomas R; Hasegawa Yuki; Hayashizaki Yoshihide
Characteristics of oligonucleotide tiling arrays measured by hybridizing full-length cDNA clones: causes of signal variation and false positive signals.
Genomics 2007;89(4):541-51.
2007: Mitani Yasumasa; Lezhava Alexander; Kawai Yuki; Kikuchi Takeshi; Oguchi-Katayama Atsuko; Kogo Yasushi; Itoh Masayoshi; Miyagi Toru; Takakura Hideki; Hoshi Kanako; Kato Chiaki; Arakawa Takahiro; Shibata Kazuhiro; Fukui Kenji; Masui Ryoji; Kuramitsu Seiki; Kiyotani Kazuma; Chalk Alistair; Tsunekawa Katsuhiko; Murakami Masami; Kamataki Tetsuya; Oka Takanori; Shimada Hiroshi; Cizdziel Paul E; Hayashizaki Yoshihide
Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology.
Nature methods 2007;4(3):257-62.
2007: Tochitani Shiro; Hayashizaki Yoshihide
Functional screening revisited in the postgenomic era.
Molecular bioSystems 2007;3(3):195-207.
2007: Todaka Nemuri; Moriya Shigeharu; Saita Kanako; Hondo Tomoko; Kiuchi Isao; Takasu Hirotoshi; Ohkuma Moriya; Piero Carninci; Hayashizaki Yoshihide; Kudo Toshiaki
Environmental cDNA analysis of the genes involved in lignocellulose digestion in the symbiotic protist community of Reticulitermes speratus.
FEMS microbiology ecology 2007;59(3):592-9.
2007: Nakamura Yoshihiro; Nakano Kazumi; Umehara Takashi; Kimura Mayumi; Hayashizaki Yoshihide; Tanaka Akiko; Horikoshi Masami; Padmanabhan Balasundaram; Yokoyama Shigeyuki
Structure of the oncoprotein gankyrin in complex with S6 ATPase of the 26S proteasome.
Structure (London, England : 1993) 2007;15(2):179-89.
2007: Maki Tei; Kidoaki Satoru; Usui Kengo; Suzuki Harukazu; Ito Masayoshi; Ito Fuyu; Hayashizaki Yoshihide; Matsuda Takehisa
Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides.
Langmuir : the ACS journal of surfaces and colloids 2007;23(5):2668-73.
2007: Beisel Kirk W; Rocha-Sanchez Sonia M; Ziegenbein Sylvia J; Morris Ken A; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Davis Robin L
Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells.
Gene 2007;386(1-2):11-23.
2007: Kruger Adele; Hofmann Oliver; Carninci Piero; Hayashizaki Yoshihide; Hide Winston
Simplified ontologies allowing comparison of developmental mammalian gene expression.
Genome biology 2007;8(10):R229.
2007: Shimokawa Kazuro; Okamura-Oho Yuko; Kurita Takio; Frith Martin C; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide
Large-scale clustering of CAGE tag expression data.
BMC bioinformatics 2007;8():161.
2006: Miura Hisashi; Tomaru Yasuhiro; Hayashizaki Yoshihide
[Innovation of transcriptome analysis]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2006;51(16 Suppl):2413-9.
2006: Handa Noriko; Kukimoto-Niino Mutsuko; Akasaka Ryogo; Murayama Kazutaka; Terada Takaho; Inoue Makoto; Yabuki Takashi; Aoki Masaaki; Seki Eiko; Matsuda Takayoshi; Nunokawa Emi; Tanaka Akiko; Hayashizaki Yoshihide; Kigawa Takanori; Shirouzu Mikako; Yokoyama Shigeyuki
Structure of the UNC5H2 death domain.
Acta crystallographica. Section D, Biological crystallography 2006;62(Pt 12):1502-9.
2006: Tomaru Yasuhiro; Hayashizaki Yoshihide
Cancer research with non-coding RNA.
Cancer science 2006;97(12):1285-90.
2006: Tochio Naoya; Koshiba Seizo; Kobayashi Naohiro; Inoue Makoto; Yabuki Takashi; Aoki Masaaki; Seki Eiko; Matsuda Takayoshi; Tomo Yasuko; Motoda Yoko; Kobayashi Atsuo; Tanaka Akiko; Hayashizaki Yoshihide; Terada Takaho; Shirouzu Mikako; Kigawa Takanori; Yokoyama Shigeyuki
Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.
Protein science : a publication of the Protein Society 2006;15(11):2534-43.
2006: Wada Kazuhiro; Howard Jason T; McConnell Patrick; Whitney Osceola; Lints Thierry; Rivas Miriam V; Horita Haruhito; Patterson Michael A; White Stephanie A; Scharff Constance; Haesler Sebastian; Zhao Shengli; Sakaguchi Hironobu; Hagiwara Masatoshi; Shiraki Toshiyuki; Hirozane-Kishikawa Tomoko; Skene Pate; Hayashizaki Yoshihide; Carninci Piero; Jarvis Erich D
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(41):15212-7.
2006: Handa Noriko; Kukimoto-Niino Mutsuko; Akasaka Ryogo; Kishishita Seiichiro; Murayama Kazutaka; Terada Takaho; Inoue Makoto; Kigawa Takanori; Kose Shingo; Imamoto Naoko; Tanaka Akiko; Hayashizaki Yoshihide; Shirouzu Mikako; Yokoyama Shigeyuki
The crystal structure of mouse Nup35 reveals atypical RNP motifs and novel homodimerization of the RRM domain.
Journal of molecular biology 2006;363(1):114-24.
2006: Kukimoto-Niino Mutsuko; Takagi Tetsuo; Akasaka Ryogo; Murayama Kazutaka; Uchikubo-Kamo Tomomi; Terada Takaho; Inoue Makoto; Watanabe Satoru; Tanaka Akiko; Hayashizaki Yoshihide; Kigawa Takanori; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of the RUN domain of the RAP2-interacting protein x.
The Journal of biological chemistry 2006;281(42):31843-53.
2006: Gustincich Stefano; Sandelin Albin; Plessy Charles; Katayama Shintaro; Simone Roberto; Lazarevic Dejan; Hayashizaki Yoshihide; Carninci Piero
The complexity of the mammalian transcriptome.
The Journal of physiology 2006;575(Pt 2):321-32.
2006: Itoh Masayoshi; Yasunishi Ayako; Imamura Kengo; Kanamori-Katayama Mutsumi; Suzuki Harukazu; Suzuki Masanori; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide
Constructing ORFeome resources with removable termination codons.
BioTechniques 2006;41(1):44, 46, 48 passim.
2006: Aung Hnin Thanda; Schroder Kate; Himes Stewart R; Brion Kristian; van Zuylen Wendy; Trieu Angela; Suzuki Harukazu; Hayashizaki Yoshihide; Hume David A; Sweet Matthew J; Ravasi Timothy
LPS regulates proinflammatory gene expression in macrophages by altering histone deacetylase expression.
The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2006;20(9):1315-27.
2006: Frith Martin C; Ponjavic Jasmina; Fredman David; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Sandelin Albin
Evolutionary turnover of mammalian transcription start sites.
Genome research 2006;16(6):713-22.
2006: Aturaliya Rajith N; Fink J Lynn; Davis Melissa J; Teasdale Melvena S; Hanson Kelly A; Miranda Kevin C; Forrest Alistair R R; Grimmond Sean M; Suzuki Harukazu; Kanamori Mutsumi; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Teasdale Rohan D
Subcellular localization of mammalian type II membrane proteins.
Traffic (Copenhagen, Denmark) 2006;7(5):613-25.
2006: Shimokuni Tatsushi; Tanimoto Keiji; Hiyama Keiko; Otani Keiko; Ohtaki Megu; Hihara Jun; Yoshida Kazuhiro; Noguchi Tsuyoshi; Kawahara Katsunobu; Natsugoe Shoji; Aikou Takashi; Okazaki Yasushi; Hayashizaki Yoshihide; Sato Yuji; Todo Satoru; Hiyama Eiso; Nishiyama Masahiko
Chemosensitivity prediction in esophageal squamous cell carcinoma: novel marker genes and efficacy-prediction formulae using their expression data.
International journal of oncology 2006;28(5):1153-62.
2006: Hayashizaki Yoshihide; Carninci Piero
Genome Network and FANTOM3: assessing the complexity of the transcriptome.
PLoS genetics 2006;2(4):e63.
2006: Bajic Vladimir B; Tan Sin Lam; Christoffels Alan; Schönbach Christian; Lipovich Leonard; Yang Liang; Hofmann Oliver; Kruger Adele; Hide Winston; Kai Chikatoshi; Kawai Jun; Hume David A; Carninci Piero; Hayashizaki Yoshihide
Mice and men: their promoter properties.
PLoS genetics 2006;2(4):e54.
2006: Frith Martin C; Forrest Alistair R; Nourbakhsh Ehsan; Pang Ken C; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Bailey Timothy L; Grimmond Sean M
The abundance of short proteins in the mammalian proteome.
PLoS genetics 2006;2(4):e52.
2006: Engström Pär G; Suzuki Harukazu; Ninomiya Noriko; Akalin Altuna; Sessa Luca; Lavorgna Giovanni; Brozzi Alessandro; Luzi Lucilla; Tan Sin Lam; Yang Liang; Kunarso Galih; Ng Edwin Lian-Chong; Batalov Serge; Wahlestedt Claes; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Wells Christine; Bajic Vladimir B; Orlando Valerio; Reid James F; Lenhard Boris; Lipovich Leonard
Complex Loci in human and mouse genomes.
PLoS genetics 2006;2(4):e47.
2006: Davis Melissa J; Hanson Kelly A; Clark Francis; Fink J Lynn; Zhang Fasheng; Kasukawa Takeya; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Teasdale Rohan D
Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units.
PLoS genetics 2006;2(4):e46.
2006: Chern Tzu-Ming; van Nimwegen Erik; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Zavolan Mihaela
A simple physical model predicts small exon length variations.
PLoS genetics 2006;2(4):e45.
2006: Seno Shigeto; Takenaka Yoichi; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Matsuda Hideo
A method for similarity search of genomic positional expression using CAGE.
PLoS genetics 2006;2(4):e44.
2006: Furuno Masaaki; Pang Ken C; Ninomiya Noriko; Fukuda Shiro; Frith Martin C; Bult Carol; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Mattick John S; Suzuki Harukazu
Clusters of internally primed transcripts reveal novel long noncoding RNAs.
PLoS genetics 2006;2(4):e37.
2006: Taylor Martin S; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Semple Colin A M
Heterotachy in mammalian promoter evolution.
PLoS genetics 2006;2(4):e30.
2006: Frith Martin C; Wilming Laurens G; Forrest Alistair; Kawaji Hideya; Tan Sin Lam; Wahlestedt Claes; Bajic Vladimir B; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Bailey Timothy L; Huminiecki Lukasz
Pseudo-messenger RNA: phantoms of the transcriptome.
PLoS genetics 2006;2(4):e23.
2006: Kodzius Rimantas; Kojima Miki; Nishiyori Hiromi; Nakamura Mari; Fukuda Shiro; Tagami Michihira; Sasaki Daisuke; Imamura Kengo; Kai Chikatoshi; Harbers Matthias; Hayashizaki Yoshihide; Carninci Piero
CAGE: cap analysis of gene expression.
Nature methods 2006;3(3):211-22.
2006: Frith Martin C; Bailey Timothy L; Kasukawa Takeya; Mignone Flavio; Kummerfeld Sarah K; Madera Martin; Sunkara Sirisha; Furuno Masaaki; Bult Carol J; Quackenbush John; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Pesole Graziano; Mattick John S
Discrimination of non-protein-coding transcripts from protein-coding mRNA.
RNA biology 2006;3(1):40-8.
2006: Kawaji Hideya; Kasukawa Takeya; Fukuda Shiro; Katayama Shintaro; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide
CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.
Nucleic acids research 2006;34(Database issue):D632-6.
2006: Fink J Lynn; Aturaliya Rajith N; Davis Melissa J; Zhang Fasheng; Hanson Kelly; Teasdale Melvena S; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Teasdale Rohan D
LOCATE: a mouse protein subcellular localization database.
Nucleic acids research 2006;34(Database issue):D213-7.
2006: Ravasi Timothy; Suzuki Harukazu; Pang Ken C; Katayama Shintaro; Furuno Masaaki; Okunishi Rie; Fukuda Shiro; Ru Kelin; Frith Martin C; Gongora M Milena; Grimmond Sean M; Hume David A; Hayashizaki Yoshihide; Mattick John S
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.
Genome research 2006;16(1):11-9.
2006: Ando Yoshinari; Hayashizaki Yoshihide
Restriction landmark genomic scanning.
Nature protocols 2006;1(6):2774-83.
2006: Brahmachary Manisha; Schönbach Christian; Yang Liang; Huang Enli; Tan Sin Lam; Chowdhary Rajesh; Krishnan S P T; Lin Chin-Yo; Hume David A; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Bajic Vladimir B
Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.
BMC bioinformatics 2006;7 Suppl 5():S8.
2006: Kawaji Hideya; Frith Martin C; Katayama Shintaro; Sandelin Albin; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide
Dynamic usage of transcription start sites within core promoters.
Genome biology 2006;7(12):R118.
2006: Ponjavic Jasmina; Lenhard Boris; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Sandelin Albin
Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters.
Genome biology 2006;7(8):R78.
2006: Hasegawa Yuki; Fukuda Shiro; Shimokawa Kazuro; Kondo Shinji; Maeda Norihiro; Hayashizaki Yoshihide
A RecA-mediated exon profiling method.
Nucleic acids research 2006;34(13):e97.
2006: Nishida Hiromi; Suzuki Takahiro; Kondo Shinji; Miura Hisashi; Fujimura Yu-ichi; Hayashizaki Yoshihide
Histone H3 acetylated at lysine 9 in promoter is associated with low nucleosome density in the vicinity of transcription start site in human cell.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2006;14(2):203-11.
2006: Wells Christine A; Chalk Alistair M; Forrest Alistair; Taylor Darrin; Waddell Nic; Schroder Kate; Himes S Roy; Faulkner Geoffrey; Lo Sandra; Kasukawa Takeya; Kawaji Hideya; Kai Chikatoshi; Kawai Jun; Katayama Shintaro; Carninci Piero; Hayashizaki Yoshihide; Hume David A; Grimmond Sean M
Alternate transcription of the Toll-like receptor signaling cascade.
Genome biology 2006;7(2):R10.
2006: Forrest Alistair R R; Taylor Darrin F; Crowe Mark L; Chalk Alistair M; Waddell Nic J; Kolle Gabriel; Faulkner Geoffrey J; Kodzius Rimantas; Katayama Shintaro; Wells Christine; Kai Chikatoshi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Grimmond Sean M
Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases.
Genome biology 2006;7(1):R5.
2006: Forrest Alistair R R; Taylor Darrin F; Fink J Lynn; Gongora M Milena; Flegg Cameron; Teasdale Rohan D; Suzuki Harukazu; Kanamori Mutsumi; Kai Chikatoshi; Hayashizaki Yoshihide; Grimmond Sean M
PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.
BMC bioinformatics 2006;7():82.
2006: Noguchi Atsushi; Watanabe Naoko; Fujimaki Ryoji; Kitamura Toshio; Hayashizaki Yoshihide; Miyaki Shigeru; Tezuka Kenichi; Hozumi Nobumichi
Use of the SST-REX method for the identification of genes expressed at the condensation stage of chondrogenic cell line ATDC5.
Journal of bone and mineral metabolism 2006;24(2):153-7.
2005: Miyagawa Kouji; Sakakura Chohei; Nakashima Susumu; Yoshikawa Tetsuji; Kin Shuichi; Nakase Yuen; Fukuda Kenichirou; Hagiwara Akeo; Okazaki Yasushi; Hayashizaki Yoshihide; Yamagishi Hisakazu
[Analysis of Reg IV expression in peritoneal dissemination of gastric cancer using real-time RT-PCR]
Gan to kagaku ryoho. Cancer & chemotherapy 2005;32(11):1707-8.
2005: Aidinis Vassilis; Carninci Piero; Armaka Maria; Witke Walter; Harokopos Vaggelis; Pavelka Norman; Koczan Dirk; Argyropoulos Christos; Thwin Maung-Maung; Möller Steffen; Waki Kazunori; Gopalakrishnakone Ponnampalam; Ricciardi-Castagnoli Paola; Thiesen Hans-Jürgen; Hayashizaki Yoshihide; Kollias George
Cytoskeletal rearrangements in synovial fibroblasts as a novel pathophysiological determinant of modeled rheumatoid arthritis.
PLoS genetics 2005;1(4):e48.
2005: Idiris Alimjan; Kidoaki Satoru; Usui Kengo; Maki Tei; Suzuki Harukazu; Ito Masayoshi; Aoki Makoto; Hayashizaki Yoshihide; Matsuda Takehisa
Force measurement for antigen-antibody interaction by atomic force microscopy using a photograft-polymer spacer.
Biomacromolecules 2005;6(5):2776-84.
2005: Li Hua; Inoue Makoto; Yabuki Takashi; Aoki Masaaki; Seki Eiko; Matsuda Takayoshi; Nunokawa Emi; Motoda Yoko; Kobayashi Atsuo; Terada Takaho; Shirouzu Mikako; Koshiba Seizo; Lin Yi-Jan; Güntert Peter; Suzuki Harukazu; Hayashizaki Yoshihide; Kigawa Takanori; Yokoyama Shigeyuki
Solution structure of the mouse enhancer of rudimentary protein reveals a novel fold.
Journal of biomolecular NMR 2005;32(4):329-34.
2005: Ichikawa Manabu; Okamura-Oho Yuko; Okunishi Rie; Kanamori Mutsumi; Suzuki Harukazu; Ritani Akishige; Nitta Hiroaki; Eguchi Naomi; Urade Yoshihiro; Hayashizaki Yoshihide
Expression analysis of genes responsible for serotonin signaling in the brain.
Neurobiology of disease 2005;19(3):378-85.
2005: Furutani Yutaka; Manabe Ri-ichiroh; Tsutsui Ko; Yamada Tomiko; Sugimoto Nagisa; Fukuda Shiro; Kawai Jun; Sugiura Nobuo; Kimata Koji; Hayashizaki Yoshihide; Sekiguchi Kiyotoshi
Identification and characterization of photomedins: novel olfactomedin-domain-containing proteins with chondroitin sulphate-E-binding activity.
The Biochemical journal 2005;389(Pt 3):675-84.
2005: Matsuo Ken-ichi; Togo Shinji; Sekido Hitoshi; Morita Tomoyuki; Kamiyama Masako; Morioka Daisuke; Kubota Toru; Miura Yasuhiko; Tanaka Kuniya; Ishikawa Takashi; Ichikawa Yasushi; Endo Itaru; Goto Hitoshi; Nitanda Hiroyuki; Okazaki Yasushi; Hayashizaki Yoshihide; Shimada Hiroshi
Pharmacologic preconditioning effects: prostaglandin E1 induces heat-shock proteins immediately after ischemia/reperfusion of the mouse liver.
Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract 2005;9(6):758-68.
2005: Hiyama Keiko; Otani Keiko; Ohtaki Megu; Satoh Kenichi; Kumazaki Tsutomu; Takahashi Tomoko; Mitsui Youji; Okazaki Yasushi; Hayashizaki Yoshihide; Omatsu Hideaki; Noguchi Takuya; Tanimoto Keiji; Nishiyama Masahiko
Differentially expressed genes throughout the cellular immortalization processes are quite different between normal human fibroblasts and endothelial cells.
International journal of oncology 2005;27(1):87-95.
2005: Arai Ryoichi; Kukimoto-Niino Mutsuko; Uda-Tochio Hiroko; Morita Satoshi; Uchikubo-Kamo Tomomi; Akasaka Ryogo; Etou Yuuka; Hayashizaki Yoshihide; Kigawa Takanori; Terada Takaho; Shirouzu Mikako; Yokoyama Shigeyuki
Crystal structure of an enhancer of rudimentary homolog (ERH) at 2.1 Angstroms resolution.
Protein science : a publication of the Protein Society 2005;14(7):1888-93.
2005: Nishioka Noriyuki; Nagano Seiichi; Nakayama Rika; Kiyonari Hiroshi; Ijiri Takashi; Taniguchi Kenichiro; Shawlot William; Hayashizaki Yoshihide; Westphal Heiner; Behringer Richard R; Matsuda Yoichi; Sakoda Saburo; Kondoh Hisato; Sasaki Hiroshi
Ssdp1 regulates head morphogenesis of mouse embryos by activating the Lim1-Ldb1 complex.
Development (Cambridge, England) 2005;132(11):2535-46.
2005: Matsumura Yonehiro; Shimokawa Kazuro; Hayashizaki Yoshihide; Ikeo Kazuho; Tateno Yoshio; Kawai Jun
Development of a spot reliability evaluation score for DNA microarrays.
Gene 2005;350(2):149-60.
2005: Kitagawa Noriyuki; Washio Takanori; Kosugi Shunichi; Yamashita Tomoya; Higashi Kenji; Yanagawa Hiroshi; Higo Kenichi; Satoh Koji; Ohtomo Yasuhiro; Sunako Tomomi; Murakami Kazuo; Matsubara Kenichi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Kikuchi Shoshi; Tomita Masaru
Computational analysis suggests that alternative first exons are involved in tissue-specific transcription in rice (Oryza sativa).
Bioinformatics (Oxford, England) 2005;21(9):1758-63.
2005: Nakabachi Atsushi; Shigenobu Shuji; Sakazume Naoko; Shiraki Toshiyuki; Hayashizaki Yoshihide; Carninci Piero; Ishikawa Hajime; Kudo Toshiaki; Fukatsu Takema
Transcriptome analysis of the aphid bacteriocyte, the symbiotic host cell that harbors an endocellular mutualistic bacterium, Buchnera.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(15):5477-82.
2005: Kiyosawa Hidenori; Mise Nathan; Iwase Shigeru; Hayashizaki Yoshihide; Abe Kuniya
Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized.
Genome research 2005;15(4):463-74.
2005: Takagi Tsuyoshi; Sakakura Chouhei; Kin Shuichi; Nakase Yuen; Fukuda Kenichiro; Shimomura Katsumi; Ito Tadao; Fujiyama Junshin; Yamasaki Junya; Tsujimoto Hiroyuki; Okazaki Yasushi; Hayashizaki Yoshihide; Yamagishi Hisakazu; Hagiwara Akeo
Dextran sulfate suppresses cell adhesion and cell cycle progression of melanoma cells.
Anticancer research 2005;25(2A):895-902.
2005: Barrios-Rodiles Miriam; Brown Kevin R; Ozdamar Barish; Bose Rohit; Liu Zhong; Donovan Robert S; Shinjo Fukiko; Liu Yongmei; Dembowy Joanna; Taylor Ian W; Luga Valbona; Przulj Natasa; Robinson Mark; Suzuki Harukazu; Hayashizaki Yoshihide; Jurisica Igor; Wrana Jeffrey L
High-throughput mapping of a dynamic signaling network in mammalian cells.
Science (New York, N.Y.) 2005;307(5715):1621-5.
2005: Morris Ken A; Snir Einat; Pompeia Celine; Koroleva Irina V; Kachar Bechara; Hayashizaki Yoshihide; Carninci Piero; Soares M Bento; Beisel Kirk W
Differential expression of genes within the cochlea as defined by a custom mouse inner ear microarray.
Journal of the Association for Research in Otolaryngology : JARO 2005;6(1):75-89.
2005: Nameki Nobukazu; Tochio Naoya; Koshiba Seizo; Inoue Makoto; Yabuki Takashi; Aoki Masaaki; Seki Eiko; Matsuda Takayoshi; Fujikura Yukiko; Saito Miyuki; Ikari Masaomi; Watanabe Megumi; Terada Takaho; Shirouzu Mikako; Yoshida Mayumi; Hirota Hiroshi; Tanaka Akiko; Hayashizaki Yoshihide; Güntert Peter; Kigawa Takanori; Yokoyama Shigeyuki
Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
Protein science : a publication of the Protein Society 2005;14(3):756-64.
2005: Pang Ken C; Stephen Stuart; Engström Pär G; Tajul-Arifin Khairina; Chen Weisan; Wahlestedt Claes; Lenhard Boris; Hayashizaki Yoshihide; Mattick John S
RNAdb--a comprehensive mammalian noncoding RNA database.
Nucleic acids research 2005;33(Database issue):D125-30.
2005: Usui Kengo; Katayama Shintaro; Kanamori-Katayama Mutsumi; Ogawa Chihiro; Kai Chikatoshi; Okada Makiko; Kawai Jun; Arakawa Takahiro; Carninci Piero; Itoh Masayoshi; Takio Koji; Miyano Masashi; Kidoaki Satoru; Matsuda Takehisa; Hayashizaki Yoshihide; Suzuki Harukazu
Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Genome biology 2005;6(12):R98.
2005: Sester David P; Trieu Angela; Brion Kristian; Schroder Kate; Ravasi Timothy; Robinson Jodie A; McDonald Rebecca C; Ripoll Vera; Wells Christine A; Suzuki Harukazu; Hayashizaki Yoshihide; Stacey Katryn J; Hume David A; Sweet Matthew J
LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action.
Immunobiology 2005;210(2-4):97-107.
2005: Nishida Hiromi; Suzuki Takahiro; Ookawa Hiroki; Tomaru Yasuhiro; Hayashizaki Yoshihide
Comparative analysis of expression of histone H2a genes in mouse.
BMC genomics 2005;6():108.
2005: Suzuki Harukazu; Hayashizaki Yoshihide
Human genome research enters a new phase.
Genome biology 2005;6(8):337.
2005: Nishida Hiromi; Tomaru Yasuhiro; Oho Yuko; Hayashizaki Yoshihide
Naturally occurring antisense RNA of histone H2a in mouse cultured cell lines.
BMC genetics 2005;6(1):23.
2005: Nishida Hiromi; Suzuki Takahiro; Tomaru Yasuhiro; Hayashizaki Yoshihide
A novel replication-independent histone H2a gene in mouse.
BMC genetics 2005;6(1):10.
2005: Caldwell Randolph B; Kierzek Andrzej M; Arakawa Hiroshi; Bezzubov Yuri; Zaim Jolanta; Fiedler Petra; Kutter Stefan; Blagodatski Artem; Kostovska Diyana; Koter Marek; Plachy Jiri; Carninci Piero; Hayashizaki Yoshihide; Buerstedde Jean-Marie
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis.
Genome biology 2005;6(1):R6.
2004: Watahiki Akira; Waki Kazunori; Hayatsu Norihito; Shiraki Toshiyuki; Kondo Shinji; Nakamura Mari; Sasaki Daisuke; Arakawa Takahiro; Kawai Jun; Harbers Matthias; Hayashizaki Yoshihide; Carninci Piero
Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas.
Nature methods 2004;1(3):233-9.
2004: Hayashizaki Yoshihide
[Future views on genome network projects]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):3017.
2004: Hayashizaki Yoshihide; Oinuma Toshihiko; Kohtsuki Shotaro
[Genomic project network and the patents (discussion)]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):3001-16.
2004: Nishikawa Miki; Hayashizaki Yoshihide
[Significance of RNAi in biology]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):2832-6.
2004: Hayashizaki Yoshihide
[Genome network: the new researching style]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(17 Suppl):2617-9.
2004: Suzuki Harukazu; Ogawa Chihiro; Usui Kengo; Hayashizaki Yoshihide
In vitro pull-down assay without expression constructs.
BioTechniques 2004;37(6):918, 920.
2004: Kasukawa Takeya; Katayama Shintaro; Kawaji Hideya; Suzuki Harukazu; Hume David A; Hayashizaki Yoshihide
Construction of representative transcript and protein sets of human, mouse, and rat as a platform for their transcriptome and proteome analysis.
Genomics 2004;84(6):913-21.
2004: Weaver Thomas; Maurer Johannes; Hayashizaki Yoshihide
Sharing genomes: an integrated approach to funding, managing and distributing genomic clone resources.
Nature reviews. Genetics 2004;5(11):861-6.
2004: Arai Ryoichi; Ito Kaori; Wakiyama Motoaki; Matsumoto Eiko; Sakamoto Ayako; Etou Yuuka; Otsuki Makiko; Inoue Mio; Hayashizaki Yoshihide; Miyagishi Makoto; Taira Kazunari; Shirouzu Mikako; Yokoyama Shigeyuki
Establishment of stable hFis1 knockdown cells with an siRNA expression vector.
Journal of biochemistry 2004;136(4):421-5.
2004: Miyagawa Kouji; Sakakura Chohei; Kin Shuichi; Nakase Yuenn; Fukuda Kenichirou; Hagiwara Akeo; Okazaki Yasushi; Hayashizaki Yoshihide; Yamagishi Hisakazu
[Over expression of Reg IV in peritoneal dissemination of gastric cancer]
Gan to kagaku ryoho. Cancer & chemotherapy 2004;31(11):1909-11.
2004: Sakakura Chouhei; Takemura Manabu; Miyagawa Kouji; Fukuda Ken-ichiro; Shimomura Katsumi; Kin Shuichi; Nakase Yuen; Kuriu Yoshiaki; Nakashima Susumu; Yoshikawa Tetsuji; Ueda Yuji; Fujiyama Junshin; Sonoyama Teruhisa; Okazaki Yasushi; Hayashizaki Yoshihide; Hagiwara Akeo; Yamagishi Hisakazu
[Utility of dopa decarboxylase as a novel marker for the detection of peritoneal micro-metastases of gastric cancer with realtime RT-PCR]
Gan to kagaku ryoho. Cancer & chemotherapy 2004;31(11):1906-8.
2004: Yuille Martin; Korn Bernhard; Moore Troy; Farmer Andrew A; Carrino John; Prange Christa; Hayashizaki Yoshihide
The responsibility to share: sharing the responsibility.
Genome research 2004;14(10B):2015-9.
2004: Nagata Toshifumi; Iizumi Shigemi; Satoh Kouji; Ooka Hisako; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Otomo Yasuhiro; Murakami Kazuo; Matsubara Kenichi; Kikuchi Shoshi
Comparative analysis of plant and animal calcium signal transduction element using plant full-length cDNA data.
Molecular biology and evolution 2004;21(10):1855-70.
2004: Katayama Shintaro; Kanamori Mutsumi; Hayashizaki Yoshihide
Integrated analysis of the genome and the transcriptome by FANTOM.
Briefings in bioinformatics 2004;5(3):249-58.
2004: Kanamori Mutsumi; Konno Hideaki; Osato Naoki; Kawai Jun; Hayashizaki Yoshihide; Suzuki Harukazu
A genome-wide and nonredundant mouse transcription factor database.
Biochemical and biophysical research communications 2004;322(3):787-93.
2004: Tanaka Tomotaka; Tanimoto Keiji; Otani Keiko; Satoh Kenichi; Ohtaki Megu; Yoshida Kazuhiro; Toge Tetsuya; Yahata Hiroshi; Tanaka Shinji; Chayama Kazuaki; Okazaki Yasushi; Hayashizaki Yoshihide; Hiyama Keiko; Nishiyama Masahiko
Concise prediction models of anticancer efficacy of 8 drugs using expression data from 12 selected genes.
International journal of cancer. Journal international du cancer 2004;111(4):617-26.
2004: Ogihara Yasunari; Mochida Keiichi; Kawaura Kanako; Murai Koji; Seki Motoaki; Kamiya Asako; Shinozaki Kazuo; Carninci Piero; Hayashizaki Yoshihide; Shin-I Tadasu; Kohara Yuji; Yamazaki Yukiko
Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags.
Genes & genetic systems 2004;79(4):227-32.
2004: Suzuki Harukazu; Okunishi Rie; Hashizume Wataru; Katayama Shintaro; Ninomiya Noriko; Osato Naoki; Sato Kenjiro; Nakamura Mari; Iida Juri; Kanamori Mutsumi; Hayashizaki Yoshihide
Identification of region-specific transcription factor genes in the adult mouse brain by medium-scale real-time RT-PCR.
FEBS letters 2004;573(1-3):214-8.
2004: Lin David M; Yang Yee Hwa; Scolnick Jonathan A; Brunet Lisa J; Marsh Heather; Peng Vivian; Okazaki Yasushi; Hayashizaki Yoshihide; Speed Terence P; Ngai John
Spatial patterns of gene expression in the olfactory bulb.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(34):12718-23.
2004: Suzuki Masanori; Hayashizaki Yoshihide
Mouse-centric comparative transcriptomics of protein coding and non-coding RNAs.
BioEssays : news and reviews in molecular, cellular and developmental biology 2004;26(8):833-43.
2004: Nameki Nobukazu; Yoneyama Misao; Koshiba Seizo; Tochio Naoya; Inoue Makoto; Seki Eiko; Matsuda Takayoshi; Tomo Yasuko; Harada Takushi; Saito Kohei; Kobayashi Naohiro; Yabuki Takashi; Aoki Masaaki; Nunokawa Emi; Matsuda Natsuko; Sakagami Noriko; Terada Takaho; Shirouzu Mikako; Yoshida Mayumi; Hirota Hiroshi; Osanai Takashi; Tanaka Akiko; Arakawa Takahiro; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide; Kinoshita Kengo; Güntert Peter; Kigawa Takanori; Yokoyama Shigeyuki
Solution structure of the RWD domain of the mouse GCN2 protein.
Protein science : a publication of the Protein Society 2004;13(8):2089-100.
2004: Mitani Yasumasa; Nakayama Takayuki; Harbers Matthias; Hayashizaki Yoshihide
Aptamer-dependent full-length cDNA synthesis by overlap extension PCR.
BioTechniques 2004;37(1):124, 126, 128-9.
2004: Sasazuki Tomonari; Okazaki Tatsuma; Tada Kurisu; Sakon-Komazawa Sachiko; Katano Mitsuo; Tanaka Masao; Yagita Hideo; Okumura Ko; Tominaga Naoko; Hayashizaki Yoshihide; Okazaki Yasushi; Nakano Hiroyasu
Genome wide analysis of TNF-inducible genes reveals that antioxidant enzymes are induced by TNF and responsible for elimination of ROS.
Molecular immunology 2004;41(5):547-51.
2004: Nagano Y; Nagahori K; Yoshiro F; Hamaguchi Y; Ishikawa T; Ichikawa Y; Togo S; Okazaki Y; Hayashizaki Y; Shimada H
Gene expression profile analysis of regenerating liver after portal vein ligation in rats by a cDNA microarray system.
Liver international : official journal of the International Association for the Study of the Liver 2004;24(3):253-8.
2004: Beisel Kirk W; Shiraki Toshiyuki; Morris Ken A; Pompeia Celine; Kachar Bechara; Arakawa Takahiro; Bono Hidemasa; Kawai Jun; Hayashizaki Yoshihide; Carninci Piero
Identification of unique transcripts from a mouse full-length, subtracted inner ear cDNA library.
Genomics 2004;83(6):1012-23.
2004: Fujita Hideaki; Umezuki Yusuke; Imamura Kanako; Ishikawa Daisuke; Uchimura Seiko; Nara Atsuki; Yoshimori Tamotsu; Hayashizaki Yoshihide; Kawai Jun; Ishidoh Kazumi; Tanaka Yoshitaka; Himeno Masaru
Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B.
Journal of cell science 2004;117(Pt 14):2997-3009.
2004: Gustincich Stefano; Contini Massimo; Gariboldi Manuela; Puopolo Michelino; Kadota Koji; Bono Hidemasa; LeMieux Julianna; Walsh Pamela; Carninci Piero; Hayashizaki Yoshihide; Okazaki Yasushi; Raviola Elio
Gene discovery in genetically labeled single dopaminergic neurons of the retina.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(14):5069-74.
2004: Hayashizaki Yoshihide; Kanamori Mutsumi
Dynamic transcriptome of mice.
Trends in biotechnology 2004;22(4):161-7.
2004: Yazaki Junshi; Shimatani Zenpei; Hashimoto Akiko; Nagata Yuko; Fujii Fumiko; Kojima Keiichi; Suzuki Kohji; Taya Toshiki; Tonouchi Mio; Nelson Charles; Nakagawa Allen; Otomo Yasuhiro; Murakami Kazuo; Matsubara Kenichi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Kikuchi Shoshi
Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.
Physiological genomics 2004;17(2):87-100.
2004: Shimomura Katsumi; Sakakura Chouhei; Takemura Manabu; Takagi Tsuyoshi; Fukuda Kenichiro; Kin Shuichi; Nakase Yuen; Miyagawa Kouji; Ohgaki Masaharu; Fujiyama Junshin; Fujita Yoshifumi; Nakanishi Masayoshi; Hagiwara Akeo; Shirane Masatomo; Okazaki Yasushi; Hayashizaki Yoshihide; Yamagishi Hisakazu
Combination of L-3-phosphoserine phosphatase and CEA using real-time RT-PCR improves accuracy in detection of peritoneal micrometastasis of gastric cancer.
Anticancer research 2004;24(2C):1113-20.
2004: Togo Shinji; Makino Hirochika; Kobayashi Takatoshi; Morita Tomoyuki; Shimizu Tetsuya; Kubota Toru; Ichikawa Yasushi; Ishikawa Takashi; Okazaki Yasushi; Hayashizaki Yoshihide; Shimada Hiroshi
Mechanism of liver regeneration after partial hepatectomy using mouse cDNA microarray.
Journal of hepatology 2004;40(3):464-71.
2004: Hayashizaki Yoshihide; Kawai Jun
A new approach to the distribution and storage of genetic resources.
Nature reviews. Genetics 2004;5(3):223-8.
2004: Maeda Takeshi; Inoue Makoto; Koshiba Seizo; Yabuki Takashi; Aoki Masaaki; Nunokawa Emi; Seki Eiko; Matsuda Takayoshi; Motoda Yoko; Kobayashi Atsuo; Hiroyasu Fumiko; Shirouzu Mikako; Terada Takaho; Hayami Nobuhiro; Ishizuka Yoshiko; Shinya Naoko; Tatsuguchi Ayako; Yoshida Mayumi; Hirota Hiroshi; Matsuo Yo; Tani Kazutoshi; Arakawa Takahiro; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide; Kigawa Takanori; Yokoyama Shigeyuki
Solution structure of the SEA domain from the murine homologue of ovarian cancer antigen CA125 (MUC16).
The Journal of biological chemistry 2004;279(13):13174-82.
2004: Chang Chiung-Wen; Tsai Chi-Wei; Wang Hsiao-Fang; Tsai Hsiu-Chao; Chen Huei-Ying; Tsai Ting-Fen; Takahashi Hiroshi; Li Hui-Yun; Fann Ming-Ji; Yang Chu-Wen; Hayashizaki Yoshihide; Saito Tetsuichiro; Liu Fu-Chin
Identification of a developmentally regulated striatum-enriched zinc-finger gene, Nolz-1, in the mammalian brain.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(8):2613-8.
2004: Kodzius Rimantas; Matsumura Yonehiro; Kasukawa Takeya; Shimokawa Kazuro; Fukuda Shiro; Shiraki Toshiyuki; Nakamura Mari; Arakawa Takahiro; Sasaki Daisuke; Kawai Jun; Harbers Matthias; Carninci Piero; Hayashizaki Yoshihide
Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags.
FEBS letters 2004;559(1-3):22-6.
2004: Shimoji Takashi; Kanda Hiroaki; Kitagawa Tomoyuki; Kadota Koji; Asai Ryoichi; Takahashi Katsutoshi; Kawaguchi Noriyoshi; Matsumoto Seiichi; Hayashizaki Yoshihide; Okazaki Yasushi; Shinomiya Kenichi
Clinico-molecular study of dedifferentiation in well-differentiated liposarcoma.
Biochemical and biophysical research communications 2004;314(4):1133-40.
2004: Hou Juan; Yashiro Kenta; Okazaki Yasushi; Saijoh Yukio; Hayashizaki Yoshihide; Hamada Hiroshi
Identification of a novel left-right asymmetrically expressed gene in the mouse belonging to the BPI/PLUNC superfamily.
Developmental dynamics : an official publication of the American Association of Anatomists 2004;229(2):373-9.
2004: Kasai Takuma; Inoue Makoto; Koshiba Seizo; Yabuki Takashi; Aoki Masaaki; Nunokawa Emi; Seki Eiko; Matsuda Takayoshi; Matsuda Natsuko; Tomo Yasuko; Shirouzu Mikako; Terada Takaho; Obayashi Naomi; Hamana Hiroaki; Shinya Naoko; Tatsuguchi Ayako; Yasuda Satoko; Yoshida Mayumi; Hirota Hiroshi; Matsuo Yo; Tani Kazutoshi; Suzuki Harukazu; Arakawa Takahiro; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide; Kigawa Takanori; Yokoyama Shigeyuki
Solution structure of a BolA-like protein from Mus musculus.
Protein science : a publication of the Protein Society 2004;13(2):545-8.
2004: Zhang Wenzheng; Hayashizaki Yoshihide; Kone Bruce C
Structure and regulation of the mDot1 gene, a mouse histone H3 methyltransferase.
The Biochemical journal 2004;377(Pt 3):641-51.
2004: Nikaido Itoshi; Saito Chika; Wakamoto Akiko; Tomaru Yasuhiro; Arakawa Takahiro; Hayashizaki Yoshihide; Okazaki Yasushi
EICO (Expression-based Imprint Candidate Organizer): finding disease-related imprinted genes.
Nucleic acids research 2004;32(Database issue):D548-51.
2004: Nagashima Takeshi; Matsuda Hideo; Silva Diego G; Petrovsky Nikolai; Konagaya Akihiko; Schönbach Christian; Kasukawa Takeya; Arakawa Takahiro; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide;
FREP: a database of functional repeats in mouse cDNAs.
Nucleic acids research 2004;32(Database issue):D471-5.
2004: Suzuki Yutaka; Yamashita Riu; Shirota Matsuyuki; Sakakibara Yuta; Chiba Joe; Mizushima-Sugano Junko; Kel Alexander E; Arakawa Takahiro; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide; Takagi Toshihisa; Nakai Kenta; Sugano Sumio
Large-scale collection and characterization of promoters of human and mouse genes.
In silico biology 2004;4(4):429-44.
2004: Tanaka Taku; Tomaru Yasuhiro; Nomura Yuki; Miura Hisashi; Suzuki Masanori; Hayashizaki Yoshihide
Comprehensive search for HNF-1beta-regulated genes in mouse hepatoma cells perturbed by transcription regulatory factor-targeted RNAi.
Nucleic acids research 2004;32(9):2740-50.
2004: Kasukawa Takeya; Bono Hidemasa; Hayashizaki Yoshihide; Okazaki Yasushi; Matsuda Hideo
MaXML: mouse annotation XML.
In silico biology 2004;4(1):7-15.
2003: Ooka Hisako; Satoh Kouji; Doi Koji; Nagata Toshifumi; Otomo Yasuhiro; Murakami Kazuo; Matsubara Kenichi; Osato Naoki; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Suzuki Koji; Kojima Keiichi; Takahara Yoshinori; Yamamoto Koji; Kikuchi Shoshi
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
DNA research : an international journal for rapid publication of reports on genes and genomes 2003;10(6):239-47.
2003: Shiraki Toshiyuki; Kondo Shinji; Katayama Shintaro; Waki Kazunori; Kasukawa Takeya; Kawaji Hideya; Kodzius Rimantas; Watahiki Akira; Nakamura Mari; Arakawa Takahiro; Fukuda Shiro; Sasaki Daisuke; Podhajska Anna; Harbers Matthias; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(26):15776-81.
2003: Futaki Sugiko; Hayashi Yoshitaka; Yamashita Megumi; Yagi Ken; Bono Hidemasa; Hayashizaki Yoshihide; Okazaki Yasushi; Sekiguchi Kiyotoshi
Molecular basis of constitutive production of basement membrane components. Gene expression profiles of Engelbreth-Holm-Swarm tumor and F9 embryonal carcinoma cells.
The Journal of biological chemistry 2003;278(50):50691-701.
2003: Fujimori Shigeo; Washio Takanori; Higo Kenichi; Ohtomo Yasuhiro; Murakami Kazuo; Matsubara Kenichi; Kawai Jun; Carninci Piero; Hayashizaki Yoshihide; Kikuchi Shoshi; Tomita Masaru
A novel feature of microsatellites in plants: a distribution gradient along the direction of transcription.
FEBS letters 2003;554(1-2):17-22.
2003: Gariboldi Manuela; Spinola Monica; Milani Silvano; Pignatiello Carmen; Kadota Koji; Bono Hidemasa; Hayashizaki Yoshihide; Dragani Tommaso A; Okazaki Yasushi
Gene expression profile of normal lungs predicts genetic predisposition to lung cancer in mice.
Carcinogenesis 2003;24(11):1819-26.
2003: Hayashizaki Yoshihide
The Riken mouse genome encyclopedia project.
Comptes rendus biologies 2003;326(10-11):923-9.
2003: Sakakura Chouhei; Miyagawa Koji; Fukuda Kenichiro; Shimomura Katsumi; Takemura Manabu; Takagi Tsuyoshi; Kin Shuichi; Nakase Yuen; Fujiyama Junshin; Mikoshiba Katsuhiko; Okazaki Yasushi; Hayashizaki Yoshihide; Hagiwara Akeo; Yamagishi Hisakazu
[Possible involvement of inositol 1, 4, 5-trisphosphate receptor type 3 (IP3R3) in the peritoneal dissemination of gastric cancers]
Gan to kagaku ryoho. Cancer & chemotherapy 2003;30(11):1784-7.
2003: Tomaru Yasuhiro; Kondo Shinji; Suzuki Masanori; Hayashizaki Yoshihide
A comprehensive search for HNF-3alpha-regulated genes in mouse hepatoma cells by 60K cDNA microarray and chromatin immunoprecipitation/PCR analysis.
Biochemical and biophysical research communications 2003;310(2):667-74.
2003: Kanamori Mutsumi; Sandy Peter; Marzinotto Stefania; Benetti Roberta; Kai Chikatoshi; Hayashizaki Yoshihide; Schneider Claudio; Suzuki Harukazu
The PDZ protein tax-interacting protein-1 inhibits beta-catenin transcriptional activity and growth of colorectal cancer cells.
The Journal of biological chemistry 2003;278(40):38758-64.
2003: Hirozane-Kishikawa Tomoko; Shiraki Toshiyuki; Waki Kazunori; Nakamura Mari; Arakawa Takahiro; Kawai Jun; Fagiolini Michela; Hensch Takao K; Hayashizaki Yoshihide; Carninci Piero
Subtraction of cap-trapped full-length cDNA libraries to select rare transcripts.
BioTechniques 2003;35(3):510-6, 518.
2003: Kokubu Chikara; Wilm Bettina; Kokubu Tomoko; Wahl Matthias; Rodrigo Isabel; Sakai Norio; Santagati Fabio; Hayashizaki Yoshihide; Suzuki Misao; Yamamura Ken-Ichi; Abe Kuniya; Imai Kenji
Undulated short-tail deletion mutation in the mouse ablates Pax1 and leads to ectopic activation of neighboring Nkx2-2 in domains that normally express Pax1.
Genetics 2003;165(1):299-307.
2003: Wells Christine A; Ravasi Timothy; Faulkner Geoffrey J; Carninci Piero; Okazaki Yasushi; Hayashizaki Yoshihide; Sweet Matthew; Wainwright Brandon J; Hume David A
Genetic control of the innate immune response.
BMC immunology 2003;4():5.
2003: Kasukawa Takeya; Furuno Masaaki; Nikaido Itoshi; Bono Hidemasa; Hume David A; Bult Carol; Hill David P; Baldarelli Richard; Gough Julian; Kanapin Alexander; Matsuda Hideo; Schriml Lynn M; Hayashizaki Yoshihide; Okazaki Yasushi; Quackenbush John
Development and evaluation of an automated annotation pipeline and cDNA annotation system.
Genome research 2003;13(6B):1542-51.
2003: Suzuki Harukazu; Saito Rintaro; Kanamori Mutsumi; Kai Chikatoshi; Schönbach Christian; Nagashima Takeshi; Hosaka Junko; Hayashizaki Yoshihide
The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewer.
Genome research 2003;13(6B):1534-41.
2003: Kawai Jun; Hayashizaki Yoshihide
DNA book.
Genome research 2003;13(6B):1488-95.
2003: Furuno Masaaki; Kasukawa Takeya; Saito Rintaro; Adachi Jun; Suzuki Harukazu; Baldarelli Richard; Hayashizaki Yoshihide; Okazaki Yasushi
CDS annotation in full-length cDNA sequence.
Genome research 2003;13(6B):1478-87.
2003: Nikaido Itoshi; Saito Chika; Mizuno Yosuke; Meguro Makiko; Bono Hidemasa; Kadomura Moritoshi; Kono Tomohiro; Morris Gerard A; Lyons Paul A; Oshimura Mitsuo; Hayashizaki Yoshihide; Okazaki Yasushi;
Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling.
Genome research 2003;13(6B):1402-9.
2003: Gustincich Stefano; Batalov Serge; Beisel Kirk W; Bono Hidemasa; Carninci Piero; Fletcher Colin F; Grimmond Sean; Hirokawa Nobutaka; Jarvis Erich D; Jegla Tim; Kawasawa Yuka; LeMieux Julianna; Miki Harukata; Raviola Elio; Teasdale Rohan D; Tominaga Naoko; Yagi Ken; Zimmer Andreas; Hayashizaki Yoshihide; Okazaki Yasushi;
Analysis of the mouse transcriptome for genes involved in the function of the nervous system.
Genome research 2003;13(6B):1395-401.
2003: Grimmond Sean M; Miranda Kevin C; Yuan Zheng; Davis Melissa J; Hume David A; Yagi Ken; Tominaga Naoko; Bono Hidemasa; Hayashizaki Yoshihide; Okazaki Yasushi; Teasdale Rohan D;
The mouse secretome: functional classification of the proteins secreted into the extracellular environment.
Genome research 2003;13(6B):1350-9.
2003: Bono Hidemasa; Nikaido Itoshi; Kasukawa Takeya; Hayashizaki Yoshihide; Okazaki Yasushi;
Comprehensive analysis of the mouse metabolome based on the transcriptome.
Genome research 2003;13(6B):1345-9.
2003: Kiyosawa Hidenori; Yamanaka Itaru; Osato Naoki; Kondo Shinji; Hayashizaki Yoshihide;
Antisense transcripts with FANTOM2 clone set and their implications for gene regulation.
Genome research 2003;13(6B):1324-34.
2003: Bono Hidemasa; Yagi Ken; Kasukawa Takeya; Nikaido Itoshi; Tominaga Naoko; Miki Rika; Mizuno Yosuke; Tomaru Yasuhiro; Goto Hitoshi; Nitanda Hiroyuki; Shimizu Daisuke; Makino Hirochika; Morita Tomoyuki; Fujiyama Junshin; Sakai Takehito; Shimoji Takashi; Hume David A; Hayashizaki Yoshihide; Okazaki Yasushi;
Systematic expression profiling of the mouse transcriptome using RIKEN cDNA microarrays.
Genome research 2003;13(6B):1318-23.
2003: Numata Koji; Kanai Akio; Saito Rintaro; Kondo Shinji; Adachi Jun; Wilming Laurens G; Hume David A; Hayashizaki Yoshihide; Tomita Masaru;
Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection.
Genome research 2003;13(6B):1301-6.
2003: Zavolan Mihaela; Kondo Shinji; Schonbach Christian; Adachi Jun; Hume David A; Hayashizaki Yoshihide; Gaasterland Terry;
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.
Genome research 2003;13(6B):1290-300.
2003: Nishiyama Tomoaki; Fujita Tomomichi; Shin-I Tadasu; Seki Motoaki; Nishide Hiroyo; Uchiyama Ikuo; Kamiya Asako; Carninci Piero; Hayashizaki Yoshihide; Shinozaki Kazuo; Kohara Yuji; Hasebe Mitsuyasu
Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(13):8007-12.
2003: Suzuki Shogo; Kondo Shinji; Hayashizaki Yoshihide
[Identification of genes by mouse genome and transcriptome analysis]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2003;48(6):747-59.
2003: Shimizu Hidetada; Taniguchi Hirokazu; Hippo Yoshitaka; Hayashizaki Yoshihide; Aburatani Hiroyuki; Ishikawa Toshihisa
Characterization of the mouse Abcc12 gene and its transcript encoding an ATP-binding cassette transporter, an orthologue of human ABCC12.
Gene 2003;310():17-28.
2003: Díaz Elva; Yang Yee Hwa; Ferreira Todd; Loh Kenneth C; Okazaki Yasushi; Hayashizaki Yoshihide; Tessier-Lavigne Marc; Speed Terence P; Ngai John
Analysis of gene expression in the developing mouse retina.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):5491-6.
2003: Gariboldi Manuela; Peissel Bernard; Fabbri Alessandra; Saran Anna; Zaffaroni Daniela; Falvella F Stefania; Spinola Monica; Tanuma Jun-ichi; Pazzaglia Simonetta; Mancuso Maria Teresa; Maurichi Andrea; Bartoli Cesare; Cataltepe Sule; Silverman Gary A; Pilotti Silvana; Hayashizaki Yoshihide; Okazaki Yasushi; Dragani Tommaso A
SCCA2-like serpins mediate genetic predisposition to skin tumors.
Cancer research 2003;63(8):1871-5.
2003: Saito Rintaro; Suzuki Harukazu; Hayashizaki Yoshihide
Construction of reliable protein-protein interaction networks with a new interaction generality measure.
Bioinformatics (Oxford, England) 2003;19(6):756-63.
2003: Walsh Nicole C; Cahill Marian; Carninci Piero; Kawai Jun; Okazaki Yasushi; Hayashizaki Yoshihide; Hume David A; Cassady A Ian
Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase gene.
Gene 2003;307():111-23.
2003: Bono Hidemasa; Kasukawa Takeya; Furuno Masaaki; Hayashizaki Yoshihide; Okazaki Yasushi
[FANTOM-DB: database of functional annotation of RIKEN mouse cDNA clones]
Seikagaku. The Journal of Japanese Biochemical Society 2003;75(2):149-52.
2003: Saito Rintaro; Suzuki Harukazu; Hayashizaki Yoshihide
Global insights into protein complexes through integrated analysis of the reliable interactome and knockout lethality.
Biochemical and biophysical research communications 2003;301(3):633-40.
2003: Kadota Koji; Nishimura Shin-Ichiro; Bono Hidemasa; Nakamura Shugo; Hayashizaki Yoshihide; Okazaki Yasushi; Takahashi Katsutoshi
Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure.
Physiological genomics 2003;12(3):251-9.
2003: Hayashizaki Yoshihide
RIKEN mouse genome encyclopedia.
Mechanisms of ageing and development 2003;124(1):93-102.
2003: Hayashizaki Y
Mouse Genome Encyclopedia Project.
Cold Spring Harbor symposia on quantitative biology 2003;68():195-204.
2003: Osato Naoki; Yamada Hitomi; Satoh Kouji; Ooka Hisako; Yamamoto Makoto; Suzuki Kohji; Kawai Jun; Carninci Piero; Ohtomo Yasuhiro; Murakami Kazuo; Matsubara Kenichi; Kikuchi Shoshi; Hayashizaki Yoshihide
Antisense transcripts with rice full-length cDNAs.
Genome biology 2003;5(1):R5.
2003: Shibata Kazuhiro; Izawa Masaki; Hayashizaki Yoshihide; Watahiki Masanori
Practical application of transcriptional sequencing for GC-rich templates.
Journal of structural and functional genomics 2003;4(1):35-9.
2002: Jarvis E D; Smith V A; Wada K; Rivas M V; McElroy M; Smulders T V; Carninci P; Hayashizaki Y; Dietrich F; Wu X; McConnell P; Yu J; Wang P P; Hartemink A J; Lin S
A framework for integrating the songbird brain.
Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology 2002;188(11-12):961-80.
2002: Kanamori Mutsumi; Kai Chikatoshi; Hayashizaki Yoshihide; Suzuki Harukazu
NF-kappaB activator Act1 associates with IL-1/Toll pathway adaptor molecule TRAF6.
FEBS letters 2002;532(1-2):241-6.
2002: Seki Motoaki; Ishida Junko; Narusaka Mari; Fujita Miki; Nanjo Tokihiko; Umezawa Taishi; Kamiya Asako; Nakajima Maiko; Enju Akiko; Sakurai Tetsuya; Satou Masakazu; Akiyama Kenji; Yamaguchi-Shinozaki Kazuko; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide; Shinozaki Kazuo
Monitoring the expression pattern of around 7,000 Arabidopsis genes under ABA treatments using a full-length cDNA microarray.
Functional & integrative genomics 2002;2(6):282-91.
2002: Sakurai A; Fujimori S; Kochiwa H; Kitamura-Abe S; Washio T; Saito R; Carninci P; Hayashizaki Y; Tomita M
On biased distribution of introns in various eukaryotes.
Gene 2002;300(1-2):89-95.
2002: Ozawa Y; Hanaoka S; Saito R; Washio T; Nakano S; Shinagawa A; Itoh M; Shibata K; Carninci P; Konno H; Kawai J; Hayashizaki Y; Tomita M
Comprehensive sequence analysis of translation termination sites in various eukaryotes.
Gene 2002;300(1-2):79-87.
2002: Díaz Elva; Ge Yongchao; Yang Yee Hwa; Loh Kenneth C; Serafini Tito A; Okazaki Yasushi; Hayashizaki Yoshihide; Speed Terence P; Ngai John; Scheiffele Peter
Molecular analysis of gene expression in the developing pontocerebellar projection system.
Neuron 2002;36(3):417-34.
2002: Stapleton Mark; Liao Guochun; Brokstein Peter; Hong Ling; Carninci Piero; Shiraki Toshiyuki; Hayashizaki Yoshihide; Champe Mark; Pacleb Joanne; Wan Ken; Yu Charles; Carlson Joe; George Reed; Celniker Susan; Rubin Gerald M
The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes.
Genome research 2002;12(8):1294-300.
2002: Kochiwa Hiromi; Suzuki Ryosuke; Washio Takanori; Saito Rintaro; Bono Hidemasa; Carninci Piero; Okazaki Yasushi; Miki Rika; Hayashizaki Yoshihide; Tomita Masaru;
Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data.
Genome research 2002;12(8):1286-93.
2002: Seki Motoaki; Narusaka Mari; Ishida Junko; Nanjo Tokihiko; Fujita Miki; Oono Youko; Kamiya Asako; Nakajima Maiko; Enju Akiko; Sakurai Tetsuya; Satou Masakazu; Akiyama Kenji; Taji Teruaki; Yamaguchi-Shinozaki Kazuko; Carninci Piero; Kawai Jun; Hayashizaki Yoshihide; Shinozaki Kazuo
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray.
The Plant journal : for cell and molecular biology 2002;31(3):279-92.
2002: Ichikawa Yasushi; Ishikawa Takashi; Takahashi Shinji; Hamaguchi Youhei; Morita Tomoyuki; Nishizuka Itaru; Yamaguchi Shigeki; Endo Itaru; Ike Hideyuki; Togo Shinji; Oki Shigeo; Shimada Hiroshi; Kadota Koji; Nakamura Shugo; Goto Hitoshi; Nitanda Hiroyuki; Satomi Susumu; Sakai Takehito; Narita Ichiei; Gejyo Fumitake; Tomaru Yasuhiro; Shimizu Kentaro; Hayashizaki Yoshihide; Okazaki Yasushi
Identification of genes regulating colorectal carcinogenesis by using the algorithm for diagnosing malignant state method.
Biochemical and biophysical research communications 2002;296(2):497-506.
2002: Osato Naoki; Itoh Masayoshi; Konno Hideaki; Kondo Shinji; Shibata Kazuhiro; Carninci Piero; Shiraki Toshiyuki; Shinagawa Akira; Arakawa Takahiro; Kikuchi Shoshi; Sato Kouji; Kawai Jun; Hayashizaki Yoshihide
A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs.
Genome research 2002;12(7):1127-34.
2002: Ito Shinji; Fujimori Toshihiko; Hayashizaki Yoshihide; Nabeshima Yo-ichi
Identification of a novel mouse membrane-bound family 1 glycosidase-like protein, which carries an atypical active site structure.
Biochimica et biophysica acta 2002;1576(3):341-5.
2002: Komatsu Sei; Kiyosawa Hidenori; Yoshiki Atsushi; Okazaki Yasushi; Yoshino Masayasu; Tomaru Yasuhiro; Watanabe Sachihiko; Muramatsu Masami; Kusakabe Moriaki; Hayashizaki Yoshihide
Identification of seven loci for static glucokinesis and dynamic glucokinesis in mice.
Mammalian genome : official journal of the International Mammalian Genome Society 2002;13(6):293-8.
2002: Seki Motoaki; Narusaka Mari; Kamiya Asako; Ishida Junko; Satou Masakazu; Sakurai Tetsuya; Nakajima Maiko; Enju Akiko; Akiyama Kenji; Oono Youko; Muramatsu Masami; Hayashizaki Yoshihide; Kawai Jun; Carninci Piero; Itoh Masayoshi; Ishii Yoshiyuki; Arakawa Takahiro; Shibata Kazuhiro; Shinagawa Akira; Shinozaki Kazuo
Functional annotation of a full-length Arabidopsis cDNA collection.
Science (New York, N.Y.) 2002;296(5565):141-5.
2002: Kawaji Hideya; Schönbach Christian; Matsuo Yo; Kawai Jun; Okazaki Yasushi; Hayashizaki Yoshihide; Matsuda Hideo
Exploration of novel motifs derived from mouse cDNA sequences.
Genome research 2002;12(3):367-78.
2002: Saito Rintaro; Suzuki Harukazu; Hayashizaki Yoshihide
Interaction generality, a measurement to assess the reliability of a protein-protein interaction.
Nucleic acids research 2002;30(5):1163-8.
2002: Mizuno Yosuke; Sotomaru Yusuke; Katsuzawa Yukiko; Kono Tomohiro; Meguro Makiko; Oshimura Mitsuo; Kawai Jun; Tomaru Yasuhiro; Kiyosawa Hidenori; Nikaido Itoshi; Amanuma Hiroshi; Hayashizaki Yoshihide; Okazaki Yasushi
Asb4, Ata3, and Dcn are novel imprinted genes identified by high-throughput screening using RIKEN cDNA microarray.
Biochemical and biophysical research communications 2002;290(5):1499-505.
2002: Kanamori Mutsumi; Suzuki Harukazu; Saito Rintaro; Muramatsu Masami; Hayashizaki Yoshihide
T2BP, a novel TRAF2 binding protein, can activate NF-kappaB and AP-1 without TNF stimulation.
Biochemical and biophysical research communications 2002;290(3):1108-13.
2002: Bono Hidemasa; Kasukawa Takeya; Hayashizaki Yoshihide; Okazaki Yasushi
READ: RIKEN Expression Array Database.
Nucleic acids research 2002;30(1):211-3.
2002: Bono Hidemasa; Kasukawa Takeya; Furuno Masaaki; Hayashizaki Yoshihide; Okazaki Yasushi
FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones.
Nucleic acids research 2002;30(1):116-8.
2002: Yamanaka Itaru; Kiyosawa Hidenori; Kondo Shinji; Saito Tetsuya; Carninci Piero; Shinagawa Akira; Aizawa Katsunori; Fukuda Shiro; Hara Ayako; Itoh Masayoshi; Kawai Jun; Shibata Kazuhiro; Arakawa Takahiro; Ishii Yoshiyuki; Hayashizaki Yoshihide
Mapping of 19032 mouse cDNAs on mouse chromosomes.
Journal of structural and functional genomics 2002;2(1):23-8.
2002: Morita Tomoyuki; Togo Shinji; Kubota Toru; Kamimukai Nobuyuki; Nishizuka Itaru; Kobayashi Takatoshi; Ichikawa Yasushi; Ishikawa Takashi; Takahashi Shinji; Matsuo Kenichi; Tomaru Yasuhiro; Okazaki Yasushi; Hayashizaki Yoshihide; Shimada Hiroshi
Mechanism of postoperative liver failure after excessive hepatectomy investigated using a cDNA microarray.
Journal of hepato-biliary-pancreatic surgery 2002;9(3):352-9.
2002: Nishizuka Itaru; Ishikawa Takashi; Hamaguchi Yohei; Kamiyama Masako; Ichikawa Yasushi; Kadota Koji; Miki Rika; Tomaru Yasuhiro; Mizuno Yosuke; Tominaga Naoko; Yano Rieko; Goto Hitoshi; Nitanda Hiroyuki; Togo Shinji; Okazaki Y; Hayashizaki Yoshihide; Shimada Hiroshi
Analysis of gene expression involved in brain metastasis from breast cancer using cDNA microarray.
Breast cancer (Tokyo, Japan) 2002;9(1):26-32.
2001: Shibata Y; Carninci P; Sato K; Hayatsu N; Shiraki T; Ishii Y; Arakawa T; Hara A; Ohsato N; Izawa M; Aizawa K; Itoh M; Shibata K; Shinagawa A; Kawai J; Ota Y; Kikuchi S; Kishimoto N; Muramatsu M; Hayashizaki Y
Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencing.
BioTechniques 2001;31(5):1042, 1044, 1048-9.
2001: Suzuki H; Fukunishi Y; Kagawa I; Saito R; Oda H; Endo T; Kondo S; Bono H; Okazaki Y; Hayashizaki Y
Protein-protein interaction panel using mouse full-length cDNAs.
Genome research 2001;11(10):1758-65.
2001: Sakai H; Washio T; Saito R; Shinagawa A; Itoh M; Shibata K; Carninci P; Konno H; Kawai J; Hayashizaki Y; Tomita M
Correlation between sequence conservation of the 5' untranslated region and codon usage bias in Mus musculus genes.
Gene 2001;276(1-2):101-5.
2001: Kondo S; Shinagawa A; Saito T; Kiyosawa H; Yamanaka I; Aizawa K; Fukuda S; Hara A; Itoh M; Kawai J; Shibata K; Hayashizaki Y
Computational analysis of full-length mouse cDNAs compared with human genome sequences.
Mammalian genome : official journal of the International Mammalian Genome Society 2001;12(9):673-7.
2001: Carninci P; Shibata Y; Hayatsu N; Itoh M; Shiraki T; Hirozane T; Watahiki A; Shibata K; Konno H; Muramatsu M; Hayashizaki Y
Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysis.
Genomics 2001;77(1-2):79-90.
2001: Shibata Y; Carninci P; Watahiki A; Shiraki T; Konno H; Muramatsu M; Hayashizaki Y
Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation method.
BioTechniques 2001;30(6):1250-4.
2001: Fukunishi Y; Hayashizaki Y
Amino acid translation program for full-length cDNA sequences with frameshift errors.
Physiological genomics 2001;5(2):81-7.
2001: Miki R; Kadota K; Bono H; Mizuno Y; Tomaru Y; Carninci P; Itoh M; Shibata K; Kawai J; Konno H; Watanabe S; Sato K; Tokusumi Y; Kikuchi N; Ishii Y; Hamaguchi Y; Nishizuka I; Goto H; Nitanda H; Satomi S; Yoshiki A; Kusakabe M; DeRisi J L; Eisen M B; Iyer V R; Brown P O; Muramatsu M; Shimada H; Okazaki Y; Hayashizaki Y
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arrays.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(5):2199-204.
2001: Konno H; Fukunishi Y; Shibata K; Itoh M; Carninci P; Sugahara Y; Hayashizaki Y
Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library.
Genome research 2001;11(2):281-9.
2001: Sugahara Y; Carninci P; Itoh M; Shibata K; Konno H; Endo T; Muramatsu M; Hayashizaki Y
Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries.
Gene 2001;263(1-2):93-102.
2001: Kadota K; Miki R; Bono H; Shimizu K; Okazaki Y; Hayashizaki Y
Preprocessing implementation for microarray (PRIM): an efficient method for processing cDNA microarray data.
Physiological genomics 2001;4(3):183-8.
2001: Seki M; Narusaka M; Abe H; Kasuga M; Yamaguchi-Shinozaki K; Carninci P; Hayashizaki Y; Shinozaki K
Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray.
The Plant cell 2001;13(1):61-72.
2000: Carninci P; Shibata Y; Hayatsu N; Sugahara Y; Shibata K; Itoh M; Konno H; Okazaki Y; Muramatsu M; Hayashizaki Y
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Genome research 2000;10(10):1617-30.
2000: Komatsu S; Okazaki Y; Tateno M; Kawai J; Konno H; Kusakabe M; Yoshiki A; Muramatsu M; Held W A; Hayashizaki Y
Methylation and downregulated expression of mac25/insulin-like growth factor binding protein-7 is associated with liver tumorigenesis in SV40T/t antigen transgenic mice, screened by restriction landmark genomic scanning for methylation (RLGS-M).
Biochemical and biophysical research communications 2000;267(1):109-17.
1999: Sugahara Y; Akiyoshi S; Okazaki Y; Tanihata I; Hayashizaki Y; Nishimura M
Application of the RLGS image analysis tool (RAT) to the construction of a genetic linkage map of recombinant inbred strain SMXA.
Mammalian genome : official journal of the International Mammalian Genome Society 1999;10(6):611-6.
1999: Itoh M; Kitsunai T; Akiyama J; Shibata K; Izawa M; Kawai J; Tomaru Y; Carninci P; Shibata Y; Ozawa Y; Muramatsu M; Okazaki Y; Hayashizaki Y
Automated filtration-based high-throughput plasmid preparation system.
Genome research 1999;9(5):463-70.
1999: Mizuno Y; Carninci P; Okazaki Y; Tateno M; Kawai J; Amanuma H; Muramatsu M; Hayashizaki Y
Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA display.
Nucleic acids research 1999;27(5):1345-9.
1999: Pearsall R S; Plass C; Romano M A; Garrick M D; Shibata H; Hayashizaki Y; Held W A
A direct repeat sequence at the Rasgrf1 locus and imprinted expression.
Genomics 1999;55(2):194-201.
1999: Carninci P; Hayashizaki Y
High-efficiency full-length cDNA cloning.
Methods in enzymology 1999;303():19-44.
1998: Sasaki N; Izawa M; Sugahara Y; Tanaka T; Watahiki M; Ozawa K; Ohara E; Funaki H; Yoneda Y; Matsuura S; Muramatsu M; Okazaki Y; Hayashizaki Y
Identification of stable RNA hairpins causing band compression in transcriptional sequencing and their elimination by use of inosine triphosphate.
Gene 1998;222(1):17-23.
1998: Mori M; Akiyoshi S; Mizuno Y; Okuizumi H; Okazaki Y; Hayashizaki Y; Nishimura M
Genetic profile of the SMXA recombinant inbred mouse strains revealed with restriction landmark genomic scanning.
Mammalian genome : official journal of the International Mammalian Genome Society 1998;9(9):695-709.
1998: Sugahara Y; Akiyoshi S; Okazaki Y; Hayashizaki Y; Tanihata I
An automatic image analysis system for RLGS films.
Mammalian genome : official journal of the International Mammalian Genome Society 1998;9(8):643-51.
1998: Izawa M; Sasaki N; Watahiki M; Ohara E; Yoneda Y; Muramatsu M; Okazaki Y; Hayashizaki Y
Recognition sites of 3'-OH group by T7 RNA polymerase and its application to transcriptional sequencing.
The Journal of biological chemistry 1998;273(23):14242-6.
1998: Sasaki N; Nagaoka S; Itoh M; Izawa M; Konno H; Carninci P; Yoshiki A; Kusakabe M; Moriuchi T; Muramatsu M; Okazaki Y; Hayashizaki Y
Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clones.
Genomics 1998;49(2):167-79.
1998: Shibata H; Yoda Y; Kato R; Ueda T; Kamiya M; Hiraiwa N; Yoshiki A; Plass C; Pearsall R S; Held W A; Muramatsu M; Sasaki H; Kusakabe M; Hayashizaki Y
A methylation imprint mark in the mouse imprinted gene Grf1/Cdc25Mm locus shares a common feature with the U2afbp-rs gene: an association with a short tandem repeat and a hypermethylated region.
Genomics 1998;49(1):30-7.
1998: Sasaki N; Izawa M; Watahiki M; Ozawa K; Tanaka T; Yoneda Y; Matsuura S; Carninci P; Muramatsu M; Okazaki Y; Hayashizaki Y
Transcriptional sequencing: A method for DNA sequencing using RNA polymerase.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(7):3455-60.
1998: Pearsall R S; Imai K; Shibata H; Hayashizaki Y; Chapman V M; Held W A; Plass C
The Rasgrf1-repeat sequence (D9Ncvs53) maps between Mod1 and Rbp1 on mouse chromosome 9 and may define a putative imprinted region.
Mammalian genome : official journal of the International Mammalian Genome Society 1998;9(3):261-2.
1998: Carninci P; Nishiyama Y; Westover A; Itoh M; Nagaoka S; Sasaki N; Okazaki Y; Muramatsu M; Hayashizaki Y
Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(2):520-4.
1997: Sasaki N; Izawa M; Shimojo M; Shibata K; Akiyama J; Itoh M; Nagaoka S; Carninci P; Okazaki Y; Moriuchi T; Muramatsu M; Watanabe S; Hayashizaki Y
A novel control system for polymerase chain reaction using a RIKEN GS384 thermalcycler.
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(6):387-91.
1997: Okazaki Y; Muramatsu M; Hayashizaki Y
[The role of the laboratory mouse and the application of RLGS to the mouse genome]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1997;42(17 Suppl):2887-96.
1997: Nishiyama Y; Carninci P; Yoneya S; Hayashizaki Y
[New approach for an analysis of full-length cDNA library]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1997;42(17 Suppl):2858-63.
1997: Shibata H; Ueda T; Kamiya M; Yoshiki A; Kusakabe M; Plass C; Held W A; Sunahara S; Katsuki M; Muramatsu M; Hayashizaki Y
An oocyte-specific methylation imprint center in the mouse U2afbp-rs/U2af1-rs1 gene marks the establishment of allele-specific methylation during preimplantation development.
Genomics 1997;44(2):171-8.
1997: Itoh M; Carninci P; Nagaoka S; Sasaki N; Okazaki Y; Ohsumi T; Muramatsu M; Hayashizaki Y
Simple and rapid preparation of plasmid template by a filtration method using microtiter filter plates.
Nucleic acids research 1997;25(6):1315-6.
1997: Carninci P; Westover A; Nishiyama Y; Ohsumi T; Itoh M; Nagaoka S; Sasaki N; Okazaki Y; Muramatsu M; Schneider C; Hayashizaki Y
High efficiency selection of full-length cDNA by improved biotinylated cap trapper.
DNA research : an international journal for rapid publication of reports on genes and genomes 1997;4(1):61-6.
1997: Okuizumi H; Ohsumi T; Sakaki N; Imoto H; Mizuno Y; Hanami T; Yamashita H; Kamiya M; Takada S; Kitamura A; Muramatsu M; Nishimura M; Mori M; Matsuda Y; Tagaya O; Okazaki Y; Hayashizaki Y
Linkage map of Syrian hamster with restriction landmark genomic scanning.
Mammalian genome : official journal of the International Mammalian Genome Society 1997;8(2):121-8.
1997: Kuromitsu J; Yamashita H; Kataoka H; Takahara T; Muramatsu M; Sekine T; Okamoto N; Furuichi Y; Hayashizaki Y
A unique downregulation of h2-calponin gene expression in Down syndrome: a possible attenuation mechanism for fetal survival by methylation at the CpG island in the trisomic chromosome 21.
Molecular and cellular biology 1997;17(2):707-12.
1996: Suzuki H; Kawai J; Taga C; Yaoi T; Hara A; Hirose K; Hayashizaki Y; Watanabe S
Stac, a novel neuron-specific protein with cysteine-rich and SH3 domains.
Biochemical and biophysical research communications 1996;229(3):902-9.
1996: Carninci P; Kvam C; Kitamura A; Ohsumi T; Okazaki Y; Itoh M; Kamiya M; Shibata K; Sasaki N; Izawa M; Muramatsu M; Hayashizaki Y; Schneider C
High-efficiency full-length cDNA cloning by biotinylated CAP trapper.
Genomics 1996;37(3):327-36.
1996: Hirotsune S; Takahara T; Sasaki N; Imoto H; Okazaki Y; Eki T; Murakami Y; Abe M; Furuya K; Muramatsu M; Eto Y; Chapman V M; Hayashizaki Y
Construction of high-resolution physical maps from yeast artificial chromosomes using restriction landmark genomic scanning (RLGS).
Genomics 1996;37(1):87-95.
1996: Plass C; Shibata H; Kalcheva I; Mullins L; Kotelevtseva N; Mullins J; Kato R; Sasaki H; Hirotsune S; Okazaki Y; Held W A; Hayashizaki Y; Chapman V M
Identification of Grf1 on mouse chromosome 9 as an imprinted gene by RLGS-M.
Nature genetics 1996;14(1):106-9.
1996: Takada S; Okazaki Y; Kamiya M; Ohsumi T; Nomura O; Okuizumi H; Sasaki N; Shibata H; Mori M; Nishimura M; Muramatsu M; Hayashizaki Y; Matsuda Y
Five candidate genes for hamster cardiomyopathy did not map to the cardiomyopathy locus by FISH analysis.
DNA research : an international journal for rapid publication of reports on genes and genomes 1996;3(4):273-6.
1996: Takahara T; Ohsumi T; Kuromitsu J; Shibata K; Sasaki N; Okazaki Y; Shibata H; Sato S; Yoshiki A; Kusakabe M; Muramatsu M; Ueki M; Okuda K; Hayashizaki Y
Dysfunction of the Orleans reeler gene arising from exon skipping due to transposition of a full-length copy of an active L1 sequence into the skipped exon.
Human molecular genetics 1996;5(7):989-93.
1996: Shibata H; Yoshino K; Sunahara S; Gondo Y; Katsuki M; Ueda T; Kamiya M; Muramatsu M; Murakami Y; Kalcheva I; Plass C; Chapman V M; Hayashizaki Y
Inactive allele-specific methylation and chromatin structure of the imprinted gene U2af1-rs1 on mouse chromosome 11.
Genomics 1996;35(1):248-52.
1996: Okazaki Y; Okuizumi H; Ohsumi T; Nomura O; Takada S; Kamiya M; Sasaki N; Matsuda Y; Nishimura M; Tagaya O; Muramatsu M; Hayashizaki Y
A genetic linkage map of the Syrian hamster and localization of cardiomyopathy locus on chromosome 9qa2.1-b1 using RLGS spot-mapping.
Nature genetics 1996;13(1):87-90.
1996: Pearsall R S; Shibata H; Brozowska A; Yoshino K; Okuda K; deJong P J; Plass C; Chapman V M; Hayashizaki Y; Held W A
Absence of imprinting in U2AFBPL, a human homologue of the imprinted mouse gene U2afbp-rs.
Biochemical and biophysical research communications 1996;222(1):171-7.
1995: Kuromitsu J; Kataoka H; Yamashita H; Muramatsu M; Furuichi Y; Sekine T; Hayashizaki Y
Reproducible alterations of DNA methylation at a specific population of CpG islands during blast formation of peripheral blood lymphocytes.
DNA research : an international journal for rapid publication of reports on genes and genomes 1995;2(6):263-7.
1995: Okuizumi H; Okazaki Y; Ohsumi T; Hanami T; Mizuno Y; Muramatsu M; Hayashizaki Y; Plass C; Chapman V M
A single gel analysis of 575 dominant and codominant restriction landmark genomic scanning loci in mice interspecific backcross progeny.
Electrophoresis 1995;16(2):253-60.
1995: Okuizumi H; Okazaki Y; Ohsumi T; Hayashizaki Y; Plass C; Chapman V M
Genetic mapping of restriction landmark genomic scanning loci in the mouse.
Electrophoresis 1995;16(2):233-40.
1995: Watanabe S; Kawai J; Hirotsune S; Suzuki H; Hirose K; Taga C; Ozawa N; Fushiki S; Hayashizaki Y
Accessibility to tissue-specific genes from methylation profiles of mouse brain genomic DNA.
Electrophoresis 1995;16(2):218-26.
1995: Shibata H; Yoshino K; Muramatsu M; Plass C; Chapman V M; Hayashizaki Y
The use of restriction landmark genomic scanning to scan the mouse genome for endogenous loci with imprinted patterns of methylation.
Electrophoresis 1995;16(2):210-7.
1995: Ohsumi T; Okazaki Y; Hirotsune S; Shibata H; Muramatsu M; Suzuki H; Taga C; Watanabe S; Hayashizaki Y
A spot cloning method for restriction landmark genomic scanning.
Electrophoresis 1995;16(2):203-9.
1995: Okazaki Y; Okuizumi H; Sasaki N; Ohsumi T; Kuromitsu J; Hirota N; Muramatsu M; Hayashizaki Y
An expanded system of restriction landmark genomic scanning (RLGS Ver. 1.8).
Electrophoresis 1995;16(2):197-202.
1995: Plass C; Kawai J; Kalcheva I; Davis L; Watanabe S; Hayashizaki Y; Chapman V
Comparative analysis of mouse NotI linking clones with mouse and human genomic sequences and transcripts.
DNA research : an international journal for rapid publication of reports on genes and genomes 1995;2(1):27-35.
1994: Hayashizaki Y; Hirotsune S; Okazaki Y; Shibata H; Akasako A; Muramatsu M; Kawai J; Hirasawa T; Watanabe S; Shiroishi T
A genetic linkage map of the mouse using restriction landmark genomic scanning (RLGS).
Genetics 1994;138(4):1207-38.
1994: Hirotsune S; Hirose K; Kataoka H; Kuromitsu J; Furuichi Y; Muramatsu M; Matsuda Y; Hayashizaki Y
Spot mapping on the standard profile of restriction landmark genomic scanning (RLGS) of sorted chromosome 20 using methylation-insensitive enzyme.
Genomics 1994;24(3):593-6.
1994: Kawai J; Hirose K; Fushiki S; Hirotsune S; Ozawa N; Hara A; Hayashizaki Y; Watanabe S
Comparison of DNA methylation patterns among mouse cell lines by restriction landmark genomic scanning.
Molecular and cellular biology 1994;14(11):7421-7.
1994: Tada M; Tada T; Takagi N; Hayashizaki Y; Shibata H; Hirotsune S; Okazaki Y; Muramatsu M; Sasaki H; Ueda T
Localization of mouse imprinted gene U2af1-rs1 to A3.2-4 band of chromosome 11 by FISH.
Mammalian genome : official journal of the International Mammalian Genome Society 1994;5(10):655.
1994: Sasaki N; Hayashizaki Y; Muramatsu M; Matsuda Y; Ando Y; Kuramoto T; Serikawa T; Azuma T; Naito A; Agui T
The gene responsible for LEC hepatitis, located on rat chromosome 16, is the homolog to the human Wilson disease gene.
Biochemical and biophysical research communications 1994;202(1):512-8.
1994: Hayashizaki Y; Shibata H; Hirotsune S; Sugino H; Okazaki Y; Sasaki N; Hirose K; Imoto H; Okuizumi H; Muramatsu M
Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method.
Nature genetics 1994;6(1):33-40.
1994: Imoto H; Hirotsune S; Muramatsu M; Okuda K; Sugimoto O; Chapman V M; Hayashizaki Y
Direct determination of NotI cleavage sites in the genomic DNA of adult mouse kidney and human trophoblast using whole-range restriction landmark genomic scanning.
DNA research : an international journal for rapid publication of reports on genes and genomes 1994;1(5):239-43.
1994: Okuizumi H; Okazaki Y; Sasaki N; Muramatsu M; Nakashima K; Fan K; Tano H; Ohba K; Hayashizaki Y
Application of the RLGS method to large-size genomes using a restriction trapper.
DNA research : an international journal for rapid publication of reports on genes and genomes 1994;1(2):99-102.
1993: Kawai J; Hirotsune S; Hirose K; Fushiki S; Watanabe S; Hayashizaki Y
Methylation profiles of genomic DNA of mouse developmental brain detected by restriction landmark genomic scanning (RLGS) method.
Nucleic acids research 1993;21(24):5604-8.
1993: Hayashizaki Y; Hirotsune S; Okazaki Y; Hatada I; Shibata H; Kawai J; Hirose K; Watanabe S; Fushiki S; Wada S
Restriction landmark genomic scanning method and its various applications.
Electrophoresis 1993;14(4):251-8.
1993: Hayashizaki Y; Hatada I; Hirotsune S; Mukai T
[Genomic scanning method--restriction landmark genomic scanning]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1993;38(3):573-80.
1993: Hayashizaki Y; Hatada I; Hirotsune S; Okazaki Y; Shibata H; Mukai T
[Restriction landmark genomic scanning (RLGS) method and its application]
Seikagaku. The Journal of Japanese Biochemical Society 1993;65(2):109-15.
1992: Hayashizaki Y; Hirotsune S; Hatada I; Tamatsukuri S; Miyamoto C; Furuichi Y; Mukai T
A new method for constructing NotI linking and boundary libraries using a restriction trapper.
Genomics 1992;14(3):733-9.
1991: Hatada I; Hayashizaki Y; Hirotsune S; Komatsubara H; Mukai T
A genomic scanning method for higher organisms using restriction sites as landmarks.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(21):9523-7.
1987: Watanabe S; Hayashizaki Y; Endo Y; Hirono M; Takimoto N; Tamaki M; Teraoka H; Miyai K; Matsubara K
Production of human thyroid-stimulating hormone in Chinese hamster ovary cells.
Biochemical and biophysical research communications 1987;149(3):1149-55.

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