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Jeffrey Hayes

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Chemicals & Drugs

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Giles O Elliott; Jeffrey J Hayes; Kevin J Murphy; Christophe Thiriet
Replication-independent nucleosome exchange is enhanced by local and specific acetylation of histone H4.
He Fang; David J Clark; Jeffrey J Hayes
DNA and nucleosomes direct distinct folding of a linker histone H1 C-terminal domain.
Ning Liu; Craig L Peterson; Jeffrey J Hayes
SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes.

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All Publications

2013: Giles O Elliott; Jeffrey J Hayes; Kevin J Murphy; Christophe Thiriet
Replication-independent nucleosome exchange is enhanced by local and specific acetylation of histone H4.
Nucleic acids research 2013;41(4):2228-38.
2012: He Fang; David J Clark; Jeffrey J Hayes
DNA and nucleosomes direct distinct folding of a linker histone H1 C-terminal domain.
Nucleic acids research 2012;40(4):1475-84.
2011: Ning Liu; Craig L Peterson; Jeffrey J Hayes
SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes.
Molecular and cellular biology 2011;31(20):4165-75.
2011: Tamara L Caterino; He Fang; Jeffrey J Hayes
Nucleosome linker DNA contacts and induces specific folding of the intrinsically disordered H1 carboxyl-terminal domain.
Molecular and cellular biology 2011;31(11):2341-8.
2011: Tamara L Caterino; Jeffrey J Hayes
Structure of the H1 C-terminal domain and function in chromatin condensation.
Biochemistry and cell biology = Biochimie et biologie cellulaire 2011;89(1):35-44.
2011: Ning Liu; Angela Balliano; Jeffrey J Hayes
Mechanism(s) of SWI/SNF-induced nucleosome mobilization.
Chembiochem : a European journal of chemical biology 2011;12(2):196-204.
2010: Ning Liu; Jeffrey J Hayes
When push comes to shove: SWI/SNF uses a nucleosome to get rid of a nucleosome.
Molecular cell 2010;38(4):484-6.
2010: Hope A Cole; Jenna M Tabor-Godwin; Jeffrey J Hayes
Uracil DNA glycosylase activity on nucleosomal DNA depends on rotational orientation of targets.
The Journal of biological chemistry 2010;285(4):2876-85.
2009: Christophe Thiriet; Jeffrey J Hayes
Linker histone phosphorylation regulates global timing of replication origin firing.
The Journal of biological chemistry 2009;284(5):2823-9.
2009: David R Chafin; Jeffrey J Hayes
Site-directed cleavage of DNA by protein-Fe(II) EDTA conjugates within model chromatin complexes.
Methods in molecular biology (Clifton, N.J.) 2009;543():121-38.
2009: Indu Jagannathan; Jeffrey J Hayes
Hydroxyl radical footprinting of protein-DNA complexes.
Methods in molecular biology (Clifton, N.J.) 2009;543():57-71.
2009: Pu-Yeh Kan; Tamara L Caterino; Jeffrey J Hayes
The H4 tail domain participates in intra- and internucleosome interactions with protein and DNA during folding and oligomerization of nucleosome arrays.
Molecular and cellular biology 2009;29(2):538-46.
2008: Xiaodong Wang; Jeffrey J Hayes
Acetylation mimics within individual core histone tail domains indicate distinct roles in regulating the stability of higher-order chromatin structure.
Molecular and cellular biology 2008;28(1):227-36.
2007: Xiaodong Wang; Jeffrey J Hayes
Site-specific binding affinities within the H2B tail domain indicate specific effects of lysine acetylation.
The Journal of biological chemistry 2007;282(45):32867-76.
2007: Tamara L Caterino; Jeffrey J Hayes
Chromatin structure depends on what's in the nucleosome's pocket.
Nature structural & molecular biology 2007;14(11):1056-8.
2007: Zungyoon Yang; Chunyang Zheng; Jeffrey J Hayes
The core histone tail domains contribute to sequence-dependent nucleosome positioning.
The Journal of biological chemistry 2007;282(11):7930-8.
2007: Pu-Yeh Kan; Jeffrey J Hayes
Detection of interactions between nucleosome arrays mediated by specific core histone tail domains.
Methods (San Diego, Calif.) 2007;41(3):278-85.
2007: Pu-Yeh Kan; Xu Lu; Jeffrey C Hansen; Jeffrey J Hayes
The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays.
Molecular and cellular biology 2007;27(6):2084-91.
2006: Xiaodong Wang; Jeffrey J Hayes
Physical methods used to study core histone tail structures and interactions in solution.
Biochemistry and cell biology = Biochimie et biologie cellulaire 2006;84(4):578-88.
2006: Christophe Thiriet; Jeffrey J Hayes
Histone dynamics during transcription: exchange of H2A/H2B dimers and H3/H4 tetramers during pol II elongation.
Results and problems in cell differentiation 2006;41():77-90.
2006: Indu Jagannathan; Hope A Cole; Jeffrey J Hayes
Base excision repair in nucleosome substrates.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2006;14(1):27-37.
2005: Chunyang Zheng; Xu Lu; Jeffrey C Hansen; Jeffrey J Hayes
Salt-dependent intra- and internucleosomal interactions of the H3 tail domain in a model oligonucleosomal array.
The Journal of biological chemistry 2005;280(39):33552-7.
2005: Barbara A L Owen; Zungyoon Yang; Maoyi Lai; Maciej Gajec; Maciez Gajek; John D Badger; Jeffrey J Hayes; Winfried Edelmann; Raju Kucherlapati; Teresa M Wilson; Cynthia T McMurray
(CAG)(n)-hairpin DNA binds to Msh2-Msh3 and changes properties of mismatch recognition.
Nature structural & molecular biology 2005;12(8):663-70.
2005: Christophe Thiriet; Jeffrey J Hayes
Chromatin in need of a fix: phosphorylation of H2AX connects chromatin to DNA repair.
Molecular cell 2005;18(6):617-22.
2005: Christophe Thiriet; Jeffrey J Hayes
Replication-independent core histone dynamics at transcriptionally active loci in vivo.
Genes & development 2005;19(6):677-82.
2005: Zungyoon Yang; Chunyang Zheng; Christophe Thiriet; Jeffrey J Hayes
The core histone N-terminal tail domains negatively regulate binding of transcription factor IIIA to a nucleosome containing a 5S RNA gene via a novel mechanism.
Molecular and cellular biology 2005;25(1):241-9.
2004: Zungyoon Yang; Jeffrey J Hayes
Large scale preparation of nucleosomes containing site-specifically chemically modified histones lacking the core histone tail domains.
Methods (San Diego, Calif.) 2004;33(1):25-32.
2004: Jeffrey J Hayes
In vitro analysis of chromatin structure in model systems.
Methods (San Diego, Calif.) 2004;33(1):1-2.
2004: Chunyang Zheng; Jeffrey J Hayes
Probing core histone tail-DNA interactions in a model dinucleosome system.
Methods in enzymology 2004;375():179-93.
2004: Joseph M Vitolo; Zungyoon Yang; Ravi Basavappa; Jeffrey J Hayes
Structural features of transcription factor IIIA bound to a nucleosome in solution.
Molecular and cellular biology 2004;24(2):697-707.
2003: Sayura Aoyagi; Paul A Wade; Jeffrey J Hayes
Nucleosome sliding induced by the xMi-2 complex does not occur exclusively via a simple twist-diffusion mechanism.
The Journal of biological chemistry 2003;278(33):30562-8.
2003: Chunyang Zheng; Jeffrey J Hayes
Intra- and inter-nucleosomal protein-DNA interactions of the core histone tail domains in a model system.
The Journal of biological chemistry 2003;278(26):24217-24.
2003: Zungyoon Yang; Jeffrey J Hayes
Xenopus transcription factor IIIA and the 5S nucleosome: development of a useful in vitro system.
Biochemistry and cell biology = Biochimie et biologie cellulaire 2003;81(3):177-84.
2003: Chunyang Zheng; Jeffrey J Hayes
Structures and interactions of the core histone tail domains.
Biopolymers 2003;68(4):539-46.
2002: Junqiang Ye; Zungyoon Yang; Jeffrey J Hayes; Thomas H Eickbush
R2 retrotransposition on assembled nucleosomes depends on the translational position of the target site.
The EMBO journal 2002;21(24):6853-64.
2002: Christine F Huggins; David R Chafin; Sayura Aoyagi; Leigh A Henricksen; Robert A Bambara; Jeffrey J Hayes
Flap endonuclease 1 efficiently cleaves base excision repair and DNA replication intermediates assembled into nucleosomes.
Molecular cell 2002;10(5):1201-11.
2002: Sayura Aoyagi; Jeffrey J Hayes
hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism.
Molecular and cellular biology 2002;22(21):7484-90.
2002: Sayura Aoyagi; Geeta J Narlikar; Chunyang Zheng; Saïd Sif; Robert E Kingston; Jeffrey J Hayes
Nucleosome remodeling by the human SWI/SNF complex requires transient global disruption of histone-DNA interactions.
Molecular and cellular biology 2002;22(11):3653-62.
2002: Kiyoe Ura; Jeffrey J Hayes
Nucleotide excision repair and chromatin remodeling.
European journal of biochemistry / FEBS 2002;269(9):2288-93.
2002: Jeffrey J Hayes
Changing chromatin from the inside.
Nature structural biology 2002;9(3):161-3.
2002: Jeffrey J Hayes; Jeffrey C Hansen
New insights into unwrapping DNA from the nucleosome from a single-molecule optical tweezers method.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(4):1752-4.
2001: Christophe Thiriet; Jeffrey J Hayes
A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo.
Genes & development 2001;15(16):2048-53.
2001: Dimitar Angelov; Joseph M Vitolo; V Mutskov; Stefan Dimitrov; Jeffrey J Hayes
Preferential interaction of the core histone tail domains with linker DNA.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(12):6599-604.
2001: Joseph M Vitolo; Christophe Thiriet; Jeffrey J Hayes
DNase I and hydroxyl radical characterization of chromatin complexes.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2001;Chapter 21():Unit 21.4.
2001: Jeffrey J Hayes; J C Hansen
Nucleosomes and the chromatin fiber.
Current opinion in genetics & development 2001;11(2):124-9.
2001: Christophe Thiriet; Jeffrey J Hayes
Assembly into chromatin and subtype-specific transcriptional effects of exogenous linker histones directly introduced into a living Physarum cell.
Journal of cell science 2001;114(Pt 5):965-73.
2001: David R Chafin; Jeffrey J Hayes
Site-directed cleavage of DNA by linker histone-Fe(II) EDTA conjugates.
Methods in molecular biology (Clifton, N.J.) 2001;148():275-90.
2000: David R Chafin; Joseph M Vitolo; Leigh A Henricksen; Robert A Bambara; Jeffrey J Hayes
Human DNA ligase I efficiently seals nicks in nucleosomes.
The EMBO journal 2000;19(20):5492-501.
2000: HR Widlund; Joseph M Vitolo; Christophe Thiriet; Jeffrey J Hayes
DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal.
Biochemistry 2000;39(13):3835-41.
2000: Antonio R Fernández de Henestrosa; T Ogi; S Aoyagi; David R Chafin; Jeffrey J Hayes; H Ohmori; Roger Woodgate
Identification of additional genes belonging to the LexA regulon in Escherichia coli.
Molecular microbiology 2000;35(6):1560-72.
2000: Joseph M Vitolo; Christophe Thiriet; Jeffrey J Hayes
The H3-H4 N-terminal tail domains are the primary mediators of transcription factor IIIA access to 5S DNA within a nucleosome.
Molecular and cellular biology 2000;20(6):2167-75.
1999: KM Lee; Saïd Sif; Robert E Kingston; Jeffrey J Hayes
hSWI/SNF disrupts interactions between the H2A N-terminal tail and nucleosomal DNA.
Biochemistry 1999;38(26):8423-9.
1999: Christophe Thiriet; Jeffrey J Hayes
Chromatin remodeling by cell cycle stage-specific extracts from Physarum polycephalum.
European journal of cell biology 1999;78(3):214-20.
1999: Christophe Thiriet; Jeffrey J Hayes
Histone proteins in vivo: cell-cycle-dependent physiological effects of exogenous linker histones incorporated into Physarum polycephalum.
Methods (San Diego, Calif.) 1999;17(2):140-50.
1999: Alan P Wolffe; Jeffrey J Hayes
Chromatin disruption and modification.
Nucleic acids research 1999;27(3):711-20.
1999: David R Chafin; KM Lee; Jeffrey J Hayes
Site-directed chemical probing of histone-DNA interactions.
Methods in molecular biology (Clifton, N.J.) 1999;119():27-43.
1999: KM Lee; David R Chafin; Jeffrey J Hayes
Targeted cross-linking and DNA cleavage within model chromatin complexes.
Methods in enzymology 1999;304():231-51.
1998: Christophe Thiriet; Jeffrey J Hayes
Functionally relevant histone-DNA interactions extend beyond the classically defined nucleosome core region.
The Journal of biological chemistry 1998;273(33):21352-8.
1998: KM Lee; Jeffrey J Hayes
Linker DNA and H1-dependent reorganization of histone-DNA interactions within the nucleosome.
Biochemistry 1998;37(24):8622-8.
1998: A Ehmann; David R Chafin; KM Lee; Jeffrey J Hayes
(1,4,7-trimethyl-1,4,7-triazacyclononane)iron (III)-mediated cleavage of DNA: detection of selected protein-DNA interactions.
Nucleic acids research 1998;26(9):2086-91.
1998: K W Winterling; David R Chafin; Jeffrey J Hayes; J Sun; Arthur S Levine; R E Yasbin; Roger Woodgate
The Bacillus subtilis DinR binding site: redefinition of the consensus sequence.
Journal of bacteriology 1998;180(8):2201-11.
1997: KM Lee; Jeffrey J Hayes
The N-terminal tail of histone H2A binds to two distinct sites within the nucleosome core.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(17):8959-64.
1997: Christophe Thiriet; Jeffrey J Hayes
Antisera directed against anti-histone H4 antibodies recognize linker histones. Novel immunological probes to detect histone interactions.
The Journal of biological chemistry 1997;272(30):18740-5.
1997: Jeffrey J Hayes; K M Lee
In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins.
Methods (San Diego, Calif.) 1997;12(1):2-9.
1996: D Pruss; Blaine Bartholomew; Jim Persinger; Jeffrey J Hayes; G Arents; E N Moudrianakis; Alan P Wolffe
An asymmetric model for the nucleosome: a binding site for linker histones inside the DNA gyres.
Science (New York, N.Y.) 1996;274(5287):614-7.
1996: Jeffrey J Hayes; R Kaplan; K Ura; D Pruss; Alan P Wolffe
A putative DNA binding surface in the globular domain of a linker histone is not essential for specific binding to the nucleosome.
The Journal of biological chemistry 1996;271(42):25817-22.
1996: Jeffrey J Hayes
Site-directed cleavage of DNA by a linker histone--Fe(II) EDTA conjugate: localization of a globular domain binding site within a nucleosome.
Biochemistry 1996;35(37):11931-7.
1995: K Ura; Jeffrey J Hayes; Alan P Wolffe
A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: restriction by linker histones.
The EMBO journal 1995;14(15):3752-65.
1995: T E Strzelecka; Jeffrey J Hayes; G Marius Clore; Angela M Gronenborn
DNA binding specificity of the Mu Ner protein.
Biochemistry 1995;34(9):2946-55.
1995: Jeffrey J Hayes
Chemical probes of DNA structure in chromatin.
Chemistry & biology 1995;2(3):127-35.
1995: D Pruss; Jeffrey J Hayes; Alan P Wolffe
Nucleosomal anatomy--where are the histones?
BioEssays : news and reviews in molecular, cellular and developmental biology 1995;17(2):161-70.
1994: K Ura; Alan P Wolffe; Jeffrey J Hayes
Core histone acetylation does not block linker histone binding to a nucleosome including a Xenopus borealis 5 S rRNA gene.
The Journal of biological chemistry 1994;269(44):27171-4.
1994: Jeffrey J Hayes; D Pruss; Alan P Wolffe
Contacts of the globular domain of histone H5 and core histones with DNA in a "chromatosome".
Proceedings of the National Academy of Sciences of the United States of America 1994;91(16):7817-21.
1994: W R Bauer; Jeffrey J Hayes; J H White; A P Wolffe
Nucleosome structural changes due to acetylation.
Journal of molecular biology 1994;236(3):685-90.
1994: P J Alfonso; M P Crippa; Jeffrey J Hayes; Michael Bustin
The footprint of chromosomal proteins HMG-14 and HMG-17 on chromatin subunits.
Journal of molecular biology 1994;236(1):189-98.
1993: Jeffrey J Hayes; Alan P Wolffe
Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(14):6415-9.
1993: J Bashkin; Jeffrey J Hayes; TD Tullius; Alan P Wolffe
Structure of DNA in a nucleosome core at high salt concentration and at high temperature.
Biochemistry 1993;32(8):1895-8.
1993: D Y Lee; Jeffrey J Hayes; D Pruss; Alan P Wolffe
A positive role for histone acetylation in transcription factor access to nucleosomal DNA.
Cell 1993;72(1):73-84.
1993: Alan P Wolffe; G Almouzni; K Ura; D Pruss; Jeffrey J Hayes
Transcription factor access to DNA in the nucleosome.
Cold Spring Harbor symposia on quantitative biology 1993;58():225-35.
1992: Jeffrey J Hayes; K R Clemens
Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5S RNA gene.
Biochemistry 1992;31(46):11600-5.
1992: Jeffrey J Hayes; TD Tullius
Structure of the TFIIIA-5 S DNA complex.
Journal of molecular biology 1992;227(2):407-17.
1992: Jeffrey J Hayes; Alan P Wolffe
The interaction of transcription factors with nucleosomal DNA.
BioEssays : news and reviews in molecular, cellular and developmental biology 1992;14(9):597-603.
1992: Jeffrey J Hayes; A P Wolffe
Experimental determination of DNA helical repeats.
Trends in biochemical sciences 1992;17(7):250.
1992: Jeffrey J Hayes; Alan P Wolffe
Histones H2A/H2B inhibit the interaction of transcription factor IIIA with the Xenopus borealis somatic 5S RNA gene in a nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(4):1229-33.
1991: Jeffrey J Hayes; J Bashkin; TD Tullius; Alan P Wolffe
The histone core exerts a dominant constraint on the structure of DNA in a nucleosome.
Biochemistry 1991;30(34):8434-40.
1991: Jeffrey J Hayes; D J Clark; Alan P Wolffe
Histone contributions to the structure of DNA in the nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(15):6829-33.
1991: Jeffrey J Hayes; W M Scovell
cis-diamminedichloroplatinum (II) modified chromatin and nucleosomal core particle.
Biochimica et biophysica acta 1991;1089(3):377-85.
1991: Jeffrey J Hayes; W M Scovell
cis-Diamminedichloroplatinum (II) modified chromatin and nucleosomal core particle probed with DNase I.
Biochimica et biophysica acta 1991;1088(3):413-8.
1991: W J Dixon; Jeffrey J Hayes; J R Levin; M F Weidner; B A Dombroski; TD Tullius
Hydroxyl radical footprinting.
Methods in enzymology 1991;208():380-413.
1990: Jeffrey J Hayes; TD Tullius; Alan P Wolffe
The structure of DNA in a nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(19):7405-9.
1990: Mair E A Churchill; Jeffrey J Hayes; TD Tullius
Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus.
Biochemistry 1990;29(25):6043-50.
1990: Jeffrey J Hayes; L Kam; TD Tullius
Footprinting protein-DNA complexes with gamma-rays.
Methods in enzymology 1990;186():545-9.
1989: Jeffrey J Hayes; TD Tullius
The missing nucleoside experiment: a new technique to study recognition of DNA by protein.
Biochemistry 1989;28(24):9521-7.
1989: Jeffrey J Hayes; TD Tullius; Alan P Wolffe
A protein-protein interaction is essential for stable complex formation on a 5 S RNA gene.
The Journal of biological chemistry 1989;264(11):6009-12.