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Jeffrey Hayes

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Chemicals & Drugs

Living Beings

Anatomy

Chromatin

Phenomena

Protein Binding

Concepts & Ideas

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Co-Publications
Name
17
Wolffe, Alan
14
Thiriet, Christophe
9
Tullius, TD
9
Chafin, David
7
Yang, Zungyoon
6
Zheng, Chunyang
6
Pruss, D
6
Vitolo, Joseph
6
Lee, KM
4
Aoyagi, Sayura
3
Kan, Pu-Yeh
3
Wang, Xiaodong
2
Woodgate, Roger
2
Sif, Saïd
2
Kingston, Robert

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Publications

TOP 3
Thiriet Christophe; Hayes Jeffrey J
Linker histone phosphorylation regulates global timing of replication origin firing.
Kan Pu-Yeh; Caterino Tamara L; Hayes Jeffrey J
The H4 tail domain participates in intra- and internucleosome interactions with protein and DNA during folding and oligomerization of nucleosome arrays.
Chafin David R; Hayes Jeffrey J
Site-directed cleavage of DNA by protein-Fe(II) EDTA conjugates within model chromatin complexes.

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All Publications

2009: Thiriet Christophe; Hayes Jeffrey J
Linker histone phosphorylation regulates global timing of replication origin firing.
The Journal of biological chemistry 2009;284(5):2823-9.
2009: Kan Pu-Yeh; Caterino Tamara L; Hayes Jeffrey J
The H4 tail domain participates in intra- and internucleosome interactions with protein and DNA during folding and oligomerization of nucleosome arrays.
Molecular and cellular biology 2009;29(2):538-46.
2009: Chafin David R; Hayes Jeffrey J
Site-directed cleavage of DNA by protein-Fe(II) EDTA conjugates within model chromatin complexes.
Methods in molecular biology (Clifton, N.J.) 2009;543():121-38.
2009: Jagannathan Indu; Hayes Jeffrey J
Hydroxyl radical footprinting of protein-DNA complexes.
Methods in molecular biology (Clifton, N.J.) 2009;543():57-71.
2008: Wang Xiaodong; Hayes Jeffrey J
Acetylation mimics within individual core histone tail domains indicate distinct roles in regulating the stability of higher-order chromatin structure.
Molecular and cellular biology 2008;28(1):227-36.
2007: Caterino Tamara L; Hayes Jeffrey J
Chromatin structure depends on what's in the nucleosome's pocket.
Nature structural & molecular biology 2007;14(11):1056-8.
2007: Wang Xiaodong; Hayes Jeffrey J
Site-specific binding affinities within the H2B tail domain indicate specific effects of lysine acetylation.
The Journal of biological chemistry 2007;282(45):32867-76.
2007: Kan Pu-Yeh; Hayes Jeffrey J
Detection of interactions between nucleosome arrays mediated by specific core histone tail domains.
Methods (San Diego, Calif.) 2007;41(3):278-85.
2007: Kan Pu-Yeh; Lu Xu; Hansen Jeffrey C; Hayes Jeffrey J
The H3 tail domain participates in multiple interactions during folding and self-association of nucleosome arrays.
Molecular and cellular biology 2007;27(6):2084-91.
2007: Yang Zungyoon; Zheng Chunyang; Hayes Jeffrey J
The core histone tail domains contribute to sequence-dependent nucleosome positioning.
The Journal of biological chemistry 2007;282(11):7930-8.
2006: Wang Xiaodong; Hayes Jeffrey J
Physical methods used to study core histone tail structures and interactions in solution.
Biochemistry and cell biology = Biochimie et biologie cellulaire 2006;84(4):578-88.
2006: Thiriet Christophe; Hayes Jeffrey J
Histone dynamics during transcription: exchange of H2A/H2B dimers and H3/H4 tetramers during pol II elongation.
Results and problems in cell differentiation 2006;41():77-90.
2006: Jagannathan Indu; Cole Hope A; Hayes Jeffrey J
Base excision repair in nucleosome substrates.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2006;14(1):27-37.
2005: Zheng Chunyang; Lu Xu; Hansen Jeffrey C; Hayes Jeffrey J
Salt-dependent intra- and internucleosomal interactions of the H3 tail domain in a model oligonucleosomal array.
The Journal of biological chemistry 2005;280(39):33552-7.
2005: Owen Barbara A L; Yang Zungyoon; Lai Maoyi; Gajec Maciej; Badger John D; Hayes Jeffrey J; Edelmann Winfried; Kucherlapati Raju; Wilson Teresa M; McMurray Cynthia T
(CAG)(n)-hairpin DNA binds to Msh2-Msh3 and changes properties of mismatch recognition.
Nature structural & molecular biology 2005;12(8):663-70.
2005: Thiriet Christophe; Hayes Jeffrey J
Chromatin in need of a fix: phosphorylation of H2AX connects chromatin to DNA repair.
Molecular cell 2005;18(6):617-22.
2005: Thiriet Christophe; Hayes Jeffrey J
Replication-independent core histone dynamics at transcriptionally active loci in vivo.
Genes & development 2005;19(6):677-82.
2005: Yang Zungyoon; Zheng Chunyang; Thiriet Christophe; Hayes Jeffrey J
The core histone N-terminal tail domains negatively regulate binding of transcription factor IIIA to a nucleosome containing a 5S RNA gene via a novel mechanism.
Molecular and cellular biology 2005;25(1):241-9.
2004: Yang Zungyoon; Hayes Jeffrey J
Large scale preparation of nucleosomes containing site-specifically chemically modified histones lacking the core histone tail domains.
Methods (San Diego, Calif.) 2004;33(1):25-32.
2004: Hayes Jeffrey J
In vitro analysis of chromatin structure in model systems.
Methods (San Diego, Calif.) 2004;33(1):1-2.
2004: Vitolo Joseph M; Yang Zungyoon; Basavappa Ravi; Hayes Jeffrey J
Structural features of transcription factor IIIA bound to a nucleosome in solution.
Molecular and cellular biology 2004;24(2):697-707.
2004: Zheng Chunyang; Hayes Jeffrey J
Probing core histone tail-DNA interactions in a model dinucleosome system.
Methods in enzymology 2004;375():179-93.
2003: Aoyagi Sayura; Wade Paul A; Hayes Jeffrey J
Nucleosome sliding induced by the xMi-2 complex does not occur exclusively via a simple twist-diffusion mechanism.
The Journal of biological chemistry 2003;278(33):30562-8.
2003: Yang Zungyoon; Hayes Jeffrey J
Xenopus transcription factor IIIA and the 5S nucleosome: development of a useful in vitro system.
Biochemistry and cell biology = Biochimie et biologie cellulaire 2003;81(3):177-84.
2003: Zheng Chunyang; Hayes Jeffrey J
Intra- and inter-nucleosomal protein-DNA interactions of the core histone tail domains in a model system.
The Journal of biological chemistry 2003;278(26):24217-24.
2003: Zheng Chunyang; Hayes Jeffrey J
Structures and interactions of the core histone tail domains.
Biopolymers 2003;68(4):539-46.
2002: Ye Junqiang; Yang Zungyoon; Hayes Jeffrey J; Eickbush Thomas H
R2 retrotransposition on assembled nucleosomes depends on the translational position of the target site.
The EMBO journal 2002;21(24):6853-64.
2002: Huggins Christine F; Chafin David R; Aoyagi Sayura; Henricksen Leigh A; Bambara Robert A; Hayes Jeffrey J
Flap endonuclease 1 efficiently cleaves base excision repair and DNA replication intermediates assembled into nucleosomes.
Molecular cell 2002;10(5):1201-11.
2002: Aoyagi Sayura; Hayes Jeffrey J
hSWI/SNF-catalyzed nucleosome sliding does not occur solely via a twist-diffusion mechanism.
Molecular and cellular biology 2002;22(21):7484-90.
2002: Aoyagi Sayura; Narlikar Geeta; Zheng Chunyang; Sif Saïd; Kingston Robert E; Hayes Jeffrey J
Nucleosome remodeling by the human SWI/SNF complex requires transient global disruption of histone-DNA interactions.
Molecular and cellular biology 2002;22(11):3653-62.
2002: Ura Kiyoe; Hayes Jeffrey J
Nucleotide excision repair and chromatin remodeling.
European journal of biochemistry / FEBS 2002;269(9):2288-93.
2002: Hayes Jeffrey J
Changing chromatin from the inside.
Nature structural biology 2002;9(3):161-3.
2002: Hayes Jeffrey J; Hansen Jeffrey C
New insights into unwrapping DNA from the nucleosome from a single-molecule optical tweezers method.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(4):1752-4.
2001: Thiriet C; Hayes J J
A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo.
Genes & development 2001;15(16):2048-53.
2001: Angelov D; Vitolo J M; Mutskov V; Dimitrov S; Hayes J J
Preferential interaction of the core histone tail domains with linker DNA.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(12):6599-604.
2001: Vitolo J M; Thiriet C; Hayes J J
DNase I and hydroxyl radical characterization of chromatin complexes.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2001;Chapter 21():Unit 21.4.
2001: Hayes J J; Hansen J C
Nucleosomes and the chromatin fiber.
Current opinion in genetics & development 2001;11(2):124-9.
2001: Thiriet C; Hayes J J
Assembly into chromatin and subtype-specific transcriptional effects of exogenous linker histones directly introduced into a living Physarum cell.
Journal of cell science 2001;114(Pt 5):965-73.
2001: Chafin D R; Hayes J J
Site-directed cleavage of DNA by linker histone-Fe(II) EDTA conjugates.
Methods in molecular biology (Clifton, N.J.) 2001;148():275-90.
2000: Chafin D R; Vitolo J M; Henricksen L A; Bambara R A; Hayes J J
Human DNA ligase I efficiently seals nicks in nucleosomes.
The EMBO journal 2000;19(20):5492-501.
2000: Widlund H R; Vitolo J M; Thiriet C; Hayes J J
DNA sequence-dependent contributions of core histone tails to nucleosome stability: differential effects of acetylation and proteolytic tail removal.
Biochemistry 2000;39(13):3835-41.
2000: Fernández De Henestrosa A R; Ogi T; Aoyagi S; Chafin D; Hayes J J; Ohmori H; Woodgate R
Identification of additional genes belonging to the LexA regulon in Escherichia coli.
Molecular microbiology 2000;35(6):1560-72.
2000: Vitolo J M; Thiriet C; Hayes J J
The H3-H4 N-terminal tail domains are the primary mediators of transcription factor IIIA access to 5S DNA within a nucleosome.
Molecular and cellular biology 2000;20(6):2167-75.
1999: Lee K M; Sif S; Kingston R E; Hayes J J
hSWI/SNF disrupts interactions between the H2A N-terminal tail and nucleosomal DNA.
Biochemistry 1999;38(26):8423-9.
1999: Thiriet C; Hayes J J
Chromatin remodeling by cell cycle stage-specific extracts from Physarum polycephalum.
European journal of cell biology 1999;78(3):214-20.
1999: Thiriet C; Hayes J J
Histone proteins in vivo: cell-cycle-dependent physiological effects of exogenous linker histones incorporated into Physarum polycephalum.
Methods (San Diego, Calif.) 1999;17(2):140-50.
1999: Wolffe A P; Hayes J J
Chromatin disruption and modification.
Nucleic acids research 1999;27(3):711-20.
1999: Chafin D R; Lee K M; Hayes J J
Site-directed chemical probing of histone-DNA interactions.
Methods in molecular biology (Clifton, N.J.) 1999;119():27-43.
1999: Lee K M; Chafin D R; Hayes J J
Targeted cross-linking and DNA cleavage within model chromatin complexes.
Methods in enzymology 1999;304():231-51.
1998: Thiriet C; Hayes J J
Functionally relevant histone-DNA interactions extend beyond the classically defined nucleosome core region.
The Journal of biological chemistry 1998;273(33):21352-8.
1998: Lee K M; Hayes J J
Linker DNA and H1-dependent reorganization of histone-DNA interactions within the nucleosome.
Biochemistry 1998;37(24):8622-8.
1998: Ehmann A; Chafin D; Lee K M; Hayes J J
(1,4,7-trimethyl-1,4,7-triazacyclononane)iron (III)-mediated cleavage of DNA: detection of selected protein-DNA interactions.
Nucleic acids research 1998;26(9):2086-91.
1998: Winterling K W; Chafin D; Hayes J J; Sun J; Levine A S; Yasbin R E; Woodgate R
The Bacillus subtilis DinR binding site: redefinition of the consensus sequence.
Journal of bacteriology 1998;180(8):2201-11.
1997: Lee K M; Hayes J J
The N-terminal tail of histone H2A binds to two distinct sites within the nucleosome core.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(17):8959-64.
1997: Thiriet C; Hayes J J
Antisera directed against anti-histone H4 antibodies recognize linker histones. Novel immunological probes to detect histone interactions.
The Journal of biological chemistry 1997;272(30):18740-5.
1997: Hayes J J; Lee K M
In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins.
Methods (San Diego, Calif.) 1997;12(1):2-9.
1996: Pruss D; Bartholomew B; Persinger J; Hayes J; Arents G; Moudrianakis E N; Wolffe A P
An asymmetric model for the nucleosome: a binding site for linker histones inside the DNA gyres.
Science (New York, N.Y.) 1996;274(5287):614-7.
1996: Hayes J J; Kaplan R; Ura K; Pruss D; Wolffe A
A putative DNA binding surface in the globular domain of a linker histone is not essential for specific binding to the nucleosome.
The Journal of biological chemistry 1996;271(42):25817-22.
1996: Hayes J J
Site-directed cleavage of DNA by a linker histone--Fe(II) EDTA conjugate: localization of a globular domain binding site within a nucleosome.
Biochemistry 1996;35(37):11931-7.
1995: Ura K; Hayes J J; Wolffe A P
A positive role for nucleosome mobility in the transcriptional activity of chromatin templates: restriction by linker histones.
The EMBO journal 1995;14(15):3752-65.
1995: Hayes J J
Chemical probes of DNA structure in chromatin.
Chemistry & biology 1995;2(3):127-35.
1995: Strzelecka T E; Hayes J J; Clore G M; Gronenborn A M
DNA binding specificity of the Mu Ner protein.
Biochemistry 1995;34(9):2946-55.
1995: Pruss D; Hayes J J; Wolffe A P
Nucleosomal anatomy--where are the histones?
BioEssays : news and reviews in molecular, cellular and developmental biology 1995;17(2):161-70.
1994: Ura K; Wolffe A P; Hayes J J
Core histone acetylation does not block linker histone binding to a nucleosome including a Xenopus borealis 5 S rRNA gene.
The Journal of biological chemistry 1994;269(44):27171-4.
1994: Hayes J J; Pruss D; Wolffe A P
Contacts of the globular domain of histone H5 and core histones with DNA in a "chromatosome".
Proceedings of the National Academy of Sciences of the United States of America 1994;91(16):7817-21.
1994: Bauer W R; Hayes J J; White J H; Wolffe A P
Nucleosome structural changes due to acetylation.
Journal of molecular biology 1994;236(3):685-90.
1994: Alfonso P J; Crippa M P; Hayes J J; Bustin M
The footprint of chromosomal proteins HMG-14 and HMG-17 on chromatin subunits.
Journal of molecular biology 1994;236(1):189-98.
1993: Hayes J J; Wolffe A P
Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(14):6415-9.
1993: Bashkin J; Hayes J J; Tullius T D; Wolffe A P
Structure of DNA in a nucleosome core at high salt concentration and at high temperature.
Biochemistry 1993;32(8):1895-8.
1993: Lee D Y; Hayes J J; Pruss D; Wolffe A P
A positive role for histone acetylation in transcription factor access to nucleosomal DNA.
Cell 1993;72(1):73-84.
1993: Wolffe A P; Almouzni G; Ura K; Pruss D; Hayes J J
Transcription factor access to DNA in the nucleosome.
Cold Spring Harbor symposia on quantitative biology 1993;58():225-35.
1992: Hayes J J; Clemens K R
Locations of contacts between individual zinc fingers of Xenopus laevis transcription factor IIIA and the internal control region of a 5S RNA gene.
Biochemistry 1992;31(46):11600-5.
1992: Hayes J J; Tullius T D
Structure of the TFIIIA-5 S DNA complex.
Journal of molecular biology 1992;227(2):407-17.
1992: Hayes J J; Wolffe A P
The interaction of transcription factors with nucleosomal DNA.
BioEssays : news and reviews in molecular, cellular and developmental biology 1992;14(9):597-603.
1992: Hayes J J; Wolffe A P
Experimental determination of DNA helical repeats.
Trends in biochemical sciences 1992;17(7):250.
1992: Hayes J J; Wolffe A P
Histones H2A/H2B inhibit the interaction of transcription factor IIIA with the Xenopus borealis somatic 5S RNA gene in a nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(4):1229-33.
1991: Hayes J J; Bashkin J; Tullius T D; Wolffe A P
The histone core exerts a dominant constraint on the structure of DNA in a nucleosome.
Biochemistry 1991;30(34):8434-40.
1991: Hayes J J; Clark D J; Wolffe A P
Histone contributions to the structure of DNA in the nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(15):6829-33.
1991: Hayes J; Scovell W M
cis-diamminedichloroplatinum (II) modified chromatin and nucleosomal core particle.
Biochimica et biophysica acta 1991;1089(3):377-85.
1991: Hayes J J; Scovell W M
cis-Diamminedichloroplatinum (II) modified chromatin and nucleosomal core particle probed with DNase I.
Biochimica et biophysica acta 1991;1088(3):413-8.
1991: Dixon W J; Hayes J J; Levin J R; Weidner M F; Dombroski B A; Tullius T D
Hydroxyl radical footprinting.
Methods in enzymology 1991;208():380-413.
1990: Hayes J J; Tullius T D; Wolffe A P
The structure of DNA in a nucleosome.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(19):7405-9.
1990: Churchill M E; Hayes J J; Tullius T D
Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus.
Biochemistry 1990;29(25):6043-50.
1990: Hayes J J; Kam L; Tullius T D
Footprinting protein-DNA complexes with gamma-rays.
Methods in enzymology 1990;186():545-9.
1989: Hayes J J; Tullius T D
The missing nucleoside experiment: a new technique to study recognition of DNA by protein.
Biochemistry 1989;28(24):9521-7.
1989: Hayes J; Tullius T D; Wolffe A P
A protein-protein interaction is essential for stable complex formation on a 5 S RNA gene.
The Journal of biological chemistry 1989;264(11):6009-12.

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