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Steven Henikoff

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Anatomy

Living Beings

Genes & Molecular Sequences

Concepts & Ideas

Chemicals & Drugs

Physiology

DNA Methylation

Procedures

Sequence Alignment

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Co-Publications
Name
30
Henikoff, Jorja
20
Comai, Luca
13
Greene, Elizabeth
13
Pietrokovski, S
13
Till, Bradley
12
Ahmad, Kami
10
Malik, Harmit
8
Zilberman, Daniel
7
Codomo, Christine
6
Enns, Linda
6
Reynolds, Steven
6
McCallum, Claire
5
Talbert, Paul
5
van Steensel, Bas
5
Vermaak, Danielle

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Publications

TOP 3
Malik Harmit S; Henikoff Steven
Major evolutionary transitions in centromere complexity.
Henikoff Steven
Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'.
Furuyama Takehito; Henikoff Steven
Centromeric nucleosomes induce positive DNA supercoils.

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All Publications

2009: Malik Harmit S; Henikoff Steven
Major evolutionary transitions in centromere complexity.
Cell 2009;138(6):1067-82.
2009: Henikoff Steven
Labile H3.3+H2A.Z nucleosomes mark 'nucleosome-free regions'.
Nature genetics 2009;41(8):865-6.
2009: Furuyama Takehito; Henikoff Steven
Centromeric nucleosomes induce positive DNA supercoils.
Cell 2009;138(1):104-13.
2009: Celniker Susan E; Dillon Laura A L; Gerstein Mark B; Gunsalus Kristin C; Henikoff Steven; Karpen Gary H; Kellis Manolis; Lai Eric C; Lieb Jason D; MacAlpine David M; Micklem Gos; Piano Fabio; Snyder Michael; Stein Lincoln; White Kevin P; Waterston Robert H;
Unlocking the secrets of the genome.
Nature 2009;459(7249):927-30.
2009: Gehring Mary; Bubb Kerry L; Henikoff Steven
Extensive demethylation of repetitive elements during seed development underlies gene imprinting.
Science (New York, N.Y.) 2009;324(5933):1447-51.
2009: Talbert Paul B; Henikoff Steven
Chromatin-based transcriptional punctuation.
Genes & development 2009;23(9):1037-41.
2009: Henikoff Steven; Henikoff Jorja G; Sakai Akiko; Loeb Gabriel B; Ahmad Kami
Genome-wide profiling of salt fractions maps physical properties of chromatin.
Genome research 2009;19(3):460-9.
2009: Gehring Mary; Reik Wolf; Henikoff Steven
DNA demethylation by DNA repair.
Trends in genetics : TIG 2009;25(2):82-90.
2009: Kumar Prateek; Henikoff Steven; Ng Pauline C
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.
Nature protocols 2009;4(7):1073-81.
2008: Cooper Jennifer L; Till Bradley J; Henikoff Steven
Fly-TILL: reverse genetics using a living point mutation resource.
Fly 2008;2(6):300-2.
2008: Yan Huihuang; Talbert Paul B; Lee Hye-Ran; Jett Jamie; Henikoff Steven; Chen Feng; Jiang Jiming
Intergenic locations of rice centromeric chromatin.
PLoS biology 2008;6(11):e286.
2008: Henikoff Steven; Strahl Brian D; Warburton Peter E
Epigenomics: a roadmap to chromatin.
Science (New York, N.Y.) 2008;322(5903):853.
2008: Zilberman Daniel; Coleman-Derr Devin; Ballinger Tracy; Henikoff Steven
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks.
Nature 2008;456(7218):125-9.
2008: Cooper Jennifer L; Greene Elizabeth A; Till Bradley J; Codomo Christine A; Wakimoto Barbara T; Henikoff Steven
Retention of induced mutations in a Drosophila reverse-genetic resource.
Genetics 2008;180(1):661-7.
2008: Henikoff Steven
Nucleosome destabilization in the epigenetic regulation of gene expression.
Nature reviews. Genetics 2008;9(1):15-26.
2008: Wang Hongda; Dalal Yamini; Henikoff Steven; Lindsay Stuart
Single-epitope recognition imaging of native chromatin.
Epigenetics & chromatin 2008;1(1):10.
2008: Cooper Jennifer L; Till Bradley J; Laport Robert G; Darlow Margaret C; Kleffner Justin M; Jamai Aziz; El-Mellouki Tarik; Liu Shiming; Ritchie Rae; Nielsen Niels; Bilyeu Kristin D; Meksem Khalid; Comai Luca; Henikoff Steven
TILLING to detect induced mutations in soybean.
BMC plant biology 2008;8():9.
2007: Henikoff Steven
Nucleosomes at active promoters: unforgettable loss.
Cancer cell 2007;12(5):407-9.
2007: Zilberman Daniel; Henikoff Steven
Genome-wide analysis of DNA methylation patterns.
Development (Cambridge, England) 2007;134(22):3959-65.
2007: Dalal Yamini; Furuyama Takehito; Vermaak Danielle; Henikoff Steven
Structure, dynamics, and evolution of centromeric nucleosomes.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(41):15974-81.
2007: Dalal Yamini; Wang Hongda; Lindsay Stuart; Henikoff Steven
Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells.
PLoS biology 2007;5(8):e218.
2007: Henikoff Steven
ENCODE and our very busy genome.
Nature genetics 2007;39(7):817-8.
2007: Ooi Siew Loon; Henikoff Steven
Germline histone dynamics and epigenetics.
Current opinion in cell biology 2007;19(3):257-65.
2007: Gehring Mary; Henikoff Steven
DNA methylation dynamics in plant genomes.
Biochimica et biophysica acta 2007;1769(5-6):276-86.
2007: Penterman Jon; Zilberman Daniel; Huh Jin Hoe; Ballinger Tracy; Henikoff Steven; Fischer Robert L
DNA demethylation in the Arabidopsis genome.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(16):6752-7.
2007: Mito Yoshiko; Henikoff Jorja G; Henikoff Steven
Histone replacement marks the boundaries of cis-regulatory domains.
Science (New York, N.Y.) 2007;315(5817):1408-11.
2007: Zilberman Daniel; Gehring Mary; Tran Robert K; Ballinger Tracy; Henikoff Steven
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.
Nature genetics 2007;39(1):61-9.
2007: Till Bradley J; Cooper Jennifer; Tai Thomas H; Colowit Peter; Greene Elizabeth A; Henikoff Steven; Comai Luca
Discovery of chemically induced mutations in rice by TILLING.
BMC plant biology 2007;7():19.
2006: Dawe R Kelly; Henikoff Steven
Centromeres put epigenetics in the driver's seat.
Trends in biochemical sciences 2006;31(12):662-9.
2006: Talbert Paul B; Henikoff Steven
Spreading of silent chromatin: inaction at a distance.
Nature reviews. Genetics 2006;7(10):793-803.
2006: Ooi Siew Loon; Priess James R; Henikoff Steven
Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans.
PLoS genetics 2006;2(6):e97.
2006: Furuyama Takehito; Henikoff Steven
Biotin-tag affinity purification of a centromeric nucleosome assembly complex.
Cell cycle (Georgetown, Tex.) 2006;5(12):1269-74.
2006: Furuyama Takehito; Dalal Yamini; Henikoff Steven
Chaperone-mediated assembly of centromeric chromatin in vitro.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(16):6172-7.
2006: Comai Luca; Henikoff Steven
TILLING: practical single-nucleotide mutation discovery.
The Plant journal : for cell and molecular biology 2006;45(4):684-94.
2006: Feinberg Andrew P; Ohlsson Rolf; Henikoff Steven
The epigenetic progenitor origin of human cancer.
Nature reviews. Genetics 2006;7(1):21-33.
2006: Till Bradley J; Zerr Troy; Comai Luca; Henikoff Steven
A protocol for TILLING and Ecotilling in plants and animals.
Nature protocols 2006;1(5):2465-77.
2006: Till Bradley J; Zerr Troy; Bowers Elisabeth; Greene Elizabeth A; Comai Luca; Henikoff Steven
High-throughput discovery of rare human nucleotide polymorphisms by Ecotilling.
Nucleic acids research 2006;34(13):e99.
2006: Ng Pauline C; Henikoff Steven
Predicting the effects of amino acid substitutions on protein function.
Annual review of genomics and human genetics 2006;7():61-80.
2006: Till Bradley J; Colbert Trenton; Codomo Christine; Enns Linda; Johnson Jessica; Reynolds Steven H; Henikoff Jorja G; Greene Elizabeth A; Steine Michael N; Comai Luca; Henikoff Steven
High-throughput TILLING for Arabidopsis.
Methods in molecular biology (Clifton, N.J.) 2006;323():127-35.
2005: Yan Huihuang; Jin Weiwei; Nagaki Kiyotaka; Tian Shulan; Ouyang Shu; Buell C Robin; Talbert Paul B; Henikoff Steven; Jiang Jiming
Transcription and histone modifications in the recombination-free region spanning a rice centromere.
The Plant cell 2005;17(12):3227-38.
2005: Henikoff Steven
Rapid changes in plant genomes.
The Plant cell 2005;17(11):2852-5.
2005: Malik Harmit S; Henikoff Steven
Positive selection of Iris, a retroviral envelope-derived host gene in Drosophila melanogaster.
PLoS genetics 2005;1(4):e44.
2005: Mito Yoshiko; Henikoff Jorja G; Henikoff Steven
Genome-scale profiling of histone H3.3 replacement patterns.
Nature genetics 2005;37(10):1090-7.
2005: Zilberman Daniel; Henikoff Steven
Epigenetic inheritance in Arabidopsis: selective silence.
Current opinion in genetics & development 2005;15(5):557-62.
2005: Vermaak Danielle; Henikoff Steven; Malik Harmit S
Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in Drosophila.
PLoS genetics 2005;1(1):96-108.
2005: Henikoff Steven
Histone modifications: combinatorial complexity or cumulative simplicity?
Proceedings of the National Academy of Sciences of the United States of America 2005;102(15):5308-9.
2005: Henikoff Steven; Dalal Yamini
Centromeric chromatin: what makes it unique?
Current opinion in genetics & development 2005;15(2):177-84.
2005: Tran Robert K; Henikoff Jorja G; Zilberman Daniel; Ditt Renata F; Jacobsen Steven E; Henikoff Steven
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes.
Current biology : CB 2005;15(2):154-9.
2005: Tran Robert K; Zilberman Daniel; de Bustos Cecilia; Ditt Renata F; Henikoff Jorja G; Lindroth Anders M; Delrow Jeffrey; Boyle Tom; Kwong Samson; Bryson Terri D; Jacobsen Steven E; Henikoff Steven
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis.
Genome biology 2005;6(11):R90.
2005: Henikoff Steven; Ahmad Kami
Assembly of variant histones into chromatin.
Annual review of cell and developmental biology 2005;21():133-53.
2005: Zerr Troy; Henikoff Steven
Automated band mapping in electrophoretic gel images using background information.
Nucleic acids research 2005;33(9):2806-12.
2004: Cooper Jennifer L; Henikoff Steven
Adaptive evolution of the histone fold domain in centromeric histones.
Molecular biology and evolution 2004;21(9):1712-8.
2004: Till Bradley J; Reynolds Steven H; Weil Clifford; Springer Nathan; Burtner Chris; Young Kim; Bowers Elisabeth; Codomo Christine A; Enns Linda C; Odden Anthony R; Greene Elizabeth A; Comai Luca; Henikoff Steven
Discovery of induced point mutations in maize genes by TILLING.
BMC plant biology 2004;4():12.
2004: Henikoff Steven; Furuyama Takehito; Ahmad Kami
Histone variants, nucleosome assembly and epigenetic inheritance.
Trends in genetics : TIG 2004;20(7):320-6.
2004: Henikoff Steven; Till Bradley J; Comai Luca
TILLING. Traditional mutagenesis meets functional genomics.
Plant physiology 2004;135(2):630-6.
2004: Henikoff Steven
Visualizing gene expression: an unfolding story.
Cell 2004;116(5):633-4.
2004: Jin Weiwei; Melo Juliana R; Nagaki Kiyotaka; Talbert Paul B; Henikoff Steven; Dawe R Kelly; Jiang Jiming
Maize centromeres: organization and functional adaptation in the genetic background of oat.
The Plant cell 2004;16(3):571-81.
2004: Comai Luca; Young Kim; Till Bradley J; Reynolds Steven H; Greene Elizabeth A; Codomo Christine A; Enns Linda C; Johnson Jessica E; Burtner Chris; Odden Anthony R; Henikoff Steven
Efficient discovery of DNA polymorphisms in natural populations by Ecotilling.
The Plant journal : for cell and molecular biology 2004;37(5):778-86.
2004: McKittrick Erin; Gafken Philip R; Ahmad Kami; Henikoff Steven
Histone H3.3 is enriched in covalent modifications associated with active chromatin.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(6):1525-30.
2004: Nagaki Kiyotaka; Cheng Zhukuan; Ouyang Shu; Talbert Paul B; Kim Mary; Jones Kristine M; Henikoff Steven; Buell C Robin; Jiang Jiming
Sequencing of a rice centromere uncovers active genes.
Nature genetics 2004;36(2):138-45.
2004: Henikoff S; McKittrick E; Ahmad K
Epigenetics, histone H3 variants, and the inheritance of chromatin states.
Cold Spring Harbor symposia on quantitative biology 2004;69():235-43.
2004: Zilberman Daniel; Henikoff Steven
Silencing of transposons in plant genomes: kick them when they're down.
Genome biology 2004;5(12):249.
2004: Talbert Paul B; Bryson Terri D; Henikoff Steven
Adaptive evolution of centromere proteins in plants and animals.
Journal of biology 2004;3(4):18.
2004: Till Bradley J; Burtner Chris; Comai Luca; Henikoff Steven
Mismatch cleavage by single-strand specific nucleases.
Nucleic acids research 2004;32(8):2632-41.
2003: Greil Frauke; van der Kraan Ineke; Delrow Jeffrey; Smothers James F; de Wit Elzo; Bussemaker Harmen J; van Driel Roel; Henikoff Steven; van Steensel Bas
Distinct HP1 and Su(var)3-9 complexes bind to sets of developmentally coexpressed genes depending on chromosomal location.
Genes & development 2003;17(22):2825-38.
2003: Malik Harmit S; Henikoff Steven
Phylogenomics of the nucleosome.
Nature structural biology 2003;10(11):882-91.
2003: van Steensel Bas; Henikoff Steven
Epigenomic profiling using microarrays.
BioTechniques 2003;35(2):346-50, 352-4, 356-7.
2003: Ng Pauline C; Henikoff Steven
SIFT: Predicting amino acid changes that affect protein function.
Nucleic acids research 2003;31(13):3812-4.
2003: Rose Timothy M; Henikoff Jorja G; Henikoff Steven
CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design.
Nucleic acids research 2003;31(13):3763-6.
2003: Henikoff Steven
Versatile assembler.
Nature 2003;423(6942):814-5, 817.
2003: Greene Elizabeth A; Codomo Christine A; Taylor Nicholas E; Henikoff Jorja G; Till Bradley J; Reynolds Steven H; Enns Linda C; Burtner Chris; Johnson Jessica E; Odden Anthony R; Comai Luca; Henikoff Steven
Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis.
Genetics 2003;164(2):731-40.
2003: Vermaak Danielle; Ahmad Kami; Henikoff Steven
Maintenance of chromatin states: an open-and-shut case.
Current opinion in cell biology 2003;15(3):266-74.
2003: Nagaki Kiyotaka; Talbert Paul B; Zhong Cathy Xiaoyan; Dawe R Kelly; Henikoff Steven; Jiang Jiming
Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres.
Genetics 2003;163(3):1221-5.
2003: Till Bradley J; Reynolds Steven H; Greene Elizabeth A; Codomo Christine A; Enns Linda C; Johnson Jessica E; Burtner Chris; Odden Anthony R; Young Kim; Taylor Nicholas E; Henikoff Jorja G; Comai Luca; Henikoff Steven
Large-scale discovery of induced point mutations with high-throughput TILLING.
Genome research 2003;13(3):524-30.
2003: Rutherford Suzanne L; Henikoff Steven
Quantitative epigenetics.
Nature genetics 2003;33(1):6-8.
2003: Henikoff Steven; Comai Luca
Single-nucleotide mutations for plant functional genomics.
Annual review of plant biology 2003;54():375-401.
2003: Till Bradley J; Colbert Trenton; Tompa Rachel; Enns Linda C; Codomo Christine A; Johnson Jessica E; Reynolds Steven H; Henikoff Jorja G; Greene Elizabeth A; Steine Michael N; Comai Luca; Henikoff Steven
High-throughput TILLING for functional genomics.
Methods in molecular biology (Clifton, N.J.) 2003;236():205-20.
2002: Lindquist Susan L; Henikoff Steven
Self-perpetuating structural states in biology, disease, and genetics.
Proceedings of the National Academy of Sciences of the United States of America 2002;99 Suppl 4():16377.
2002: Malik Harmit S; Henikoff Steven
Conflict begets complexity: the evolution of centromeres.
Current opinion in genetics & development 2002;12(6):711-8.
2002: Ahmad Kami; Henikoff Steven
Histone H3 variants specify modes of chromatin assembly.
Proceedings of the National Academy of Sciences of the United States of America 2002;99 Suppl 4():16477-84.
2002: Ahmad Kami; Henikoff Steven
Epigenetic consequences of nucleosome dynamics.
Cell 2002;111(3):281-4.
2002: Vermaak Danielle; Hayden Hillary S; Henikoff Steven
Centromere targeting element within the histone fold domain of Cid.
Molecular and cellular biology 2002;22(21):7553-61.
2002: Smothers James F; Henikoff Steven; Carter Paul
Tech.Sight. Phage display. Affinity selection from biological libraries.
Science (New York, N.Y.) 2002;298(5593):621-2.
2002: Henikoff Jorja G; Greene Elizabeth A; Taylor Nick; Henikoff Steven; Pietrokovski Shmuel
Using the blocks database to recognize functional domains.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2002;Chapter 2():Unit 2.2.
2002: Ahmad Kami; Henikoff Steven
The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly.
Molecular cell 2002;9(6):1191-200.
2002: Talbert Paul B; Masuelli Ricardo; Tyagi Anand P; Comai Luca; Henikoff Steven
Centromeric localization and adaptive evolution of an Arabidopsis histone H3 variant.
The Plant cell 2002;14(5):1053-66.
2002: Henikoff Steven; Malik Harmit S
Centromeres: selfish drivers.
Nature 2002;417(6886):227.
2002: Henikoff Steven
Near the edge of a chromosome's "black hole".
Trends in genetics : TIG 2002;18(4):165-7.
2002: Ng Pauline C; Henikoff Steven
Accounting for human polymorphisms predicted to affect protein function.
Genome research 2002;12(3):436-46.
2002: Henikoff Steven
Beyond the central dogma.
Bioinformatics (Oxford, England) 2002;18(2):223-5.
2002: Malik Harmit S; Vermaak Danielle; Henikoff Steven
Recurrent evolution of DNA-binding motifs in the Drosophila centromeric histone.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(3):1449-54.
2002: Tompa Rachel; McCallum Claire M; Delrow Jeffrey; Henikoff Jorja G; van Steensel Bas; Henikoff Steven
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3.
Current biology : CB 2002;12(1):65-8.
2001: Henikoff S
Chromosomes on the move.
Trends in genetics : TIG 2001;17(12):689-90.
2001: Smothers J F; Henikoff S
Predicting in vivo protein peptide interactions with random phage display.
Combinatorial chemistry & high throughput screening 2001;4(7):585-91.
2001: Henikoff S; Ahmad K; Malik H S
The centromere paradox: stable inheritance with rapidly evolving DNA.
Science (New York, N.Y.) 2001;293(5532):1098-102.
2001: Colbert T; Till B J; Tompa R; Reynolds S; Steine M N; Yeung A T; McCallum C M; Comai L; Henikoff S
High-throughput screening for induced point mutations.
Plant physiology 2001;126(2):480-4.
2001: Lindroth A M; Cao X; Jackson J P; Zilberman D; McCallum C M; Henikoff S; Jacobsen S E
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation.
Science (New York, N.Y.) 2001;292(5524):2077-80.
2001: Ng P C; Henikoff S
Predicting deleterious amino acid substitutions.
Genome research 2001;11(5):863-74.
2001: Smothers J F; Henikoff S
The hinge and chromo shadow domain impart distinct targeting of HP1-like proteins.
Molecular and cellular biology 2001;21(7):2555-69.
2001: Ahmad K; Henikoff S
Modulation of a transcription factor counteracts heterochromatic gene silencing in Drosophila.
Cell 2001;104(6):839-47.
2001: van Steensel B; Delrow J; Henikoff S
Chromatin profiling using targeted DNA adenine methyltransferase.
Nature genetics 2001;27(3):304-8.
2000: Henikoff S; Vermaak D
Bugs on drugs go GAGAA.
Cell 2000;103(5):695-8.
2000: Ng P C; Henikoff J G; Henikoff S
PHAT: a transmembrane-specific substitution matrix. Predicted hydrophobic and transmembrane.
Bioinformatics (Oxford, England) 2000;16(9):760-6.
2000: Malik H S; Henikoff S; Eickbush T H
Poised for contagion: evolutionary origins of the infectious abilities of invertebrate retroviruses.
Genome research 2000;10(9):1307-18.
2000: Malik H S; Henikoff S
Dual recognition-incision enzymes might be involved in mismatch repair and meiosis.
Trends in biochemical sciences 2000;25(9):414-8.
2000: McCallum C M; Comai L; Greene E A; Henikoff S
Targeting induced local lesions IN genomes (TILLING) for plant functional genomics.
Plant physiology 2000;123(2):439-42.
2000: Henikoff J G; Pietrokovski S; McCallum C M; Henikoff S
Blocks-based methods for detecting protein homology.
Electrophoresis 2000;21(9):1700-6.
2000: McCallum C M; Comai L; Greene E A; Henikoff S
Targeted screening for induced mutations.
Nature biotechnology 2000;18(4):455-7.
2000: van Steensel B; Henikoff S
Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase.
Nature biotechnology 2000;18(4):424-8.
2000: Henikoff S
Heterochromatin function in complex genomes.
Biochimica et biophysica acta 2000;1470(1):O1-8.
2000: Smothers J F; Henikoff S
The HP1 chromo shadow domain binds a consensus peptide pentamer.
Current biology : CB 2000;10(1):27-30.
2000: Henikoff S; Ahmad K; Platero J S; van Steensel B
Heterochromatic deposition of centromeric histone H3-like proteins.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(2):716-21.
2000: Talbert P B; Henikoff S
A reexamination of spreading of position-effect variegation in the white-roughest region of Drosophila melanogaster.
Genetics 2000;154(1):259-72.
2000: Henikoff J G; Greene E A; Pietrokovski S; Henikoff S
Increased coverage of protein families with the blocks database servers.
Nucleic acids research 2000;28(1):228-30.
2000: Henikoff S; Eissenberg J C; Hilliker A J; Schmidt E R; Wallrath L L
Reaching for new heitz.
Genetica 2000;109(1-2):7-8.
2000: Henikoff S; Henikoff J G
Amino acid substitution matrices.
Advances in protein chemistry 2000;54():73-97.
1999: Platero J S; Ahmad K; Henikoff S
A distal heterochromatic block displays centromeric activity when detached from a natural centromere.
Molecular cell 1999;4(6):995-1004.
1999: Henikoff S; Henikoff J G; Pietrokovski S
Blocks+: a non-redundant database of protein alignment blocks derived from multiple compilations.
Bioinformatics (Oxford, England) 1999;15(6):471-9.
1999: Sass G L; Henikoff S
Pairing-dependent mislocalization of a Drosophila brown gene reporter to a heterochromatic environment.
Genetics 1999;152(2):595-604.
1999: Henikoff J G; Henikoff S; Pietrokovski S
New features of the Blocks Database servers.
Nucleic acids research 1999;27(1):226-8.
1998: Csink A K; Henikoff S
Large-scale chromosomal movements during interphase progression in Drosophila.
The Journal of cell biology 1998;143(1):13-22.
1998: Henikoff S
Conspiracy of silence among repeated transgenes.
BioEssays : news and reviews in molecular, cellular and developmental biology 1998;20(7):532-5.
1998: Csink A K; Henikoff S
Something from nothing: the evolution and utility of satellite repeats.
Trends in genetics : TIG 1998;14(5):200-4.
1998: Henikoff S; Comai L
Trans-sensing effects: the ups and downs of being together.
Cell 1998;93(3):329-32.
1998: Henikoff S; Comai L
A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis.
Genetics 1998;149(1):307-18.
1998: Pietrokovski S; Henikoff J G; Henikoff S
Exploring protein homology with the Blocks server.
Trends in genetics : TIG 1998;14(4):162-3.
1998: Rose T M; Schultz E R; Henikoff J G; Pietrokovski S; McCallum C M; Henikoff S
Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences.
Nucleic acids research 1998;26(7):1628-35.
1998: Platero J S; Csink A K; Quintanilla A; Henikoff S
Changes in chromosomal localization of heterochromatin-binding proteins during the cell cycle in Drosophila.
The Journal of cell biology 1998;140(6):1297-306.
1998: Sass G L; Henikoff S
Comparative analysis of position-effect variegation mutations in Drosophila melanogaster delineates the targets of modifiers.
Genetics 1998;148(2):733-41.
1998: Henikoff S; Pietrokovski S; Henikoff J G
Superior performance in protein homology detection with the Blocks Database servers.
Nucleic acids research 1998;26(1):309-12.
1997: Dorer D R; Henikoff S
Transgene repeat arrays interact with distant heterochromatin and cause silencing in cis and trans.
Genetics 1997;147(3):1181-90.
1997: Green E A; Pietrokovski S; Henikoff S; Bork P; Attwood T; Hood L; Bairoch A
Genome maps 8. Building gene families. Wall chart.
Science (New York, N.Y.) 1997;278(5338):615-30.
1997: Henikoff S; Greene E A; Pietrokovski S; Bork P; Attwood T K; Hood L
Gene families: the taxonomy of protein paralogs and chimeras.
Science (New York, N.Y.) 1997;278(5338):609-14.
1997: Martin-Morris L E; Csink A K; Dorer D R; Talbert P B; Henikoff S
Heterochromatic trans-inactivation of Drosophila white transgenes.
Genetics 1997;147(2):671-7.
1997: Henikoff S
Nuclear organization and gene expression: homologous pairing and long-range interactions.
Current opinion in cell biology 1997;9(3):388-95.
1997: Pietrokovski S; Henikoff S
A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons.
Molecular & general genetics : MGG 1997;254(6):689-95.
1997: Henikoff J G; Pietrokovski S; Henikoff S
Recent enhancements to the Blocks Database servers.
Nucleic acids research 1997;25(1):222-5.
1996: Henikoff S; Endow S A; Greene E A
Connecting protein family resources using the proWeb network.
Trends in biochemical sciences 1996;21(11):444-5.
1996: Csink A K; Henikoff S
Genetic modification of heterochromatic association and nuclear organization in Drosophila.
Nature 1996;381(6582):529-31.
1996: Henikoff S
Dosage-dependent modification of position-effect variegation in Drosophila.
BioEssays : news and reviews in molecular, cellular and developmental biology 1996;18(5):401-9.
1996: Sabl J F; Henikoff S
Copy number and orientation determine the susceptibility of a gene to silencing by nearby heterochromatin in Drosophila.
Genetics 1996;142(2):447-58.
1996: Pietrokovski S; Henikoff J G; Henikoff S
The Blocks database--a system for protein classification.
Nucleic acids research 1996;24(1):197-200.
1996: Clark D; Henikoff S
Ordered deletions using exonuclease III.
Methods in molecular biology (Clifton, N.J.) 1996;57():139-47.
1996: Henikoff J G; Henikoff S
Blocks database and its applications.
Methods in enzymology 1996;266():88-105.
1996: Clark D; Henikoff S
Ordered deletions using exonuclease III.
Methods in molecular biology (Clifton, N.J.) 1996;58():349-57.
1996: Wines D R; Talbert P B; Clark D V; Henikoff S
Introduction of a DNA methyltransferase into Drosophila to probe chromatin structure in vivo.
Chromosoma 1996;104(5):332-40.
1995: Henikoff S; Henikoff J G; Alford W J; Pietrokovski S
Automated construction and graphical presentation of protein blocks from unaligned sequences.
Gene 1995;163(2):GC17-26.
1995: Henikoff S; Jackson J M; Talbert P B
Distance and pairing effects on the brownDominant heterochromatic element in Drosophila.
Genetics 1995;140(3):1007-17.
1995: Martin-Morris L E; Henikoff S
Conservation of brown gene trans-inactivation in Drosophila.
Genetics 1995;140(1):193-9.
1995: Henikoff S
Gene silencing in Drosophila.
Current topics in microbiology and immunology 1995;197():193-208.
1994: Henikoff S; Henikoff J G
Position-based sequence weights.
Journal of molecular biology 1994;243(4):574-8.
1994: Henikoff S
A reconsideration of the mechanism of position effect.
Genetics 1994;138(1):1-5.
1994: Dorer D R; Henikoff S
Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila.
Cell 1994;77(7):993-1002.
1994: Talbert P B; LeCiel C D; Henikoff S
Modification of the Drosophila heterochromatic mutation brownDominant by linkage alterations.
Genetics 1994;136(2):559-71.
1994: Henikoff S; Henikoff J G
Protein family classification based on searching a database of blocks.
Genomics 1994;19(1):97-107.
1994: Clark D; Henikoff S
Ordered deletions using exonuclease III.
Methods in molecular biology (Clifton, N.J.) 1994;31():47-55.
1993: Henikoff S; Henikoff J G
Performance evaluation of amino acid substitution matrices.
Proteins 1993;17(1):49-61.
1993: Henikoff S
Transcriptional activator components and poxvirus DNA-dependent ATPases comprise a single family.
Trends in biochemical sciences 1993;18(8):291-2.
1993: Henikoff S
Sequence analysis by electronic mail server.
Trends in biochemical sciences 1993;18(7):267-8.
1993: Henikoff S; Meneely P M
Unwinding dosage compensation.
Cell 1993;72(1):1-2.
1993: Martin-Morris L E; Loughney K; Kershisnik E O; Poortinga G; Henikoff S
Characterization of sequences responsible for trans-inactivation of the Drosophila brown gene.
Cold Spring Harbor symposia on quantitative biology 1993;58():577-84.
1992: Henikoff S
Position effect and related phenomena.
Current opinion in genetics & development 1992;2(6):907-12.
1992: Henikoff S; Henikoff J G
Amino acid substitution matrices from protein blocks.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(22):10915-9.
1992: Wines D R; Henikoff S
Somatic instability of a Drosophila chromosome.
Genetics 1992;131(3):683-91.
1992: Clark D V; Henikoff S
Unusual organizational features of the Drosophila Gart locus are not conserved within Diptera.
Journal of molecular evolution 1992;35(1):51-9.
1992: Henikoff S
Detection of Caenorhabditis transposon homologs in diverse organisms.
The New biologist 1992;4(4):382-8.
1991: Henikoff S; Henikoff J G
Automated assembly of protein blocks for database searching.
Nucleic acids research 1991;19(23):6565-72.
1991: Henikoff S
Playing with blocks: some pitfalls of forcing multiple alignments.
The New biologist 1991;3(12):1148-54.
1991: Dreesen T D; Henikoff S; Loughney K
A pairing-sensitive element that mediates trans-inactivation is associated with the Drosophila brown gene.
Genes & development 1991;5(3):331-40.
1990: Henikoff S
Position-effect variegation after 60 years.
Trends in genetics : TIG 1990;6(12):422-6.
1990: Henikoff S
Ordered deletions for DNA sequencing and in vitro mutagenesis by polymerase extension and exonuclease III gapping of circular templates.
Nucleic acids research 1990;18(10):2961-6.
1989: Henikoff S; Smith J M
The human mRNA that provides the N-terminus of chimeric G6PD encodes GMP reductase.
Cell 1989;58(6):1021-2.
1989: Henikoff S; Dreesen T D
Trans-inactivation of the Drosophila brown gene: evidence for transcriptional repression and somatic pairing dependence.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(17):6704-8.
1988: Dreesen T D; Johnson D H; Henikoff S
The brown protein of Drosophila melanogaster is similar to the white protein and to components of active transport complexes.
Molecular and cellular biology 1988;8(12):5206-15.
1988: Henikoff S; Haughn G W; Calvo J M; Wallace J C
A large family of bacterial activator proteins.
Proceedings of the National Academy of Sciences of the United States of America 1988;85(18):6602-6.
1988: Henikoff S; Wallace J C
Detection of protein similarities using nucleotide sequence databases.
Nucleic acids research 1988;16(13):6191-204.
1988: Henikoff S; Plasterk R H
Related transposons in C.elegans and D.melanogaster.
Nucleic acids research 1988;16(13):6234.
1987: Henikoff S; Eghtedarzadeh M K
Conserved arrangement of nested genes at the Drosophila Gart locus.
Genetics 1987;117(4):711-25.

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