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Jay Hesselberth

Research Profile

Chemicals & Drugs

Concepts & Ideas

Living Beings

Saccharomyces cerevisiae

Procedures

Protein Interaction Mapping

Devices

Occupations

Computational Biology

Phenomena

Physiology

Gene Expression Regulation, Fungal

Co-author Network

Publications

TOP 3
Xueni Li; Jolene Ramsey; Tao Xu; Lingdi Zhang; Wenzheng Zhang; Kirk C Hansen; Jay R Hesselberth; Ryan Hill; Rui Zhao
Comprehensive in vivo RNA-binding site analyses reveal a role of Prp8 in spliceosomal assembly.
Sara J Cooper; Gregory L Finney; Shauna L Brown; Sven K Nelson; Jay R Hesselberth; Michael J MacCoss; Stanley Fields
High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection.
Xiaoyu Chen; Michael M Hoffman; Jeff A Bilmes; Jay R Hesselberth; William Stafford Noble
A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data.

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All Publications

2013: Xueni Li; Jolene Ramsey; Tao Xu; Lingdi Zhang; Wenzheng Zhang; Kirk C Hansen; Jay R Hesselberth; Ryan Hill; Rui Zhao
Comprehensive in vivo RNA-binding site analyses reveal a role of Prp8 in spliceosomal assembly.
Nucleic acids research 2013;41(6):3805-18.
2010: Sara J Cooper; Gregory L Finney; Shauna L Brown; Sven K Nelson; Jay R Hesselberth; Michael J MacCoss; Stanley Fields
High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection.
Genome research 2010;20(9):1288-96.
2010: Xiaoyu Chen; Michael M Hoffman; Jeff A Bilmes; Jay R Hesselberth; William Stafford Noble
A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data.
Bioinformatics (Oxford, England) 2010;26(12):i334-42.
2010: Chris Todd Hittinger; Jay R Hesselberth
Nucleosome patterning evolution: steady aim despite moving targets.
Molecular systems biology 2010;6():376.
2010: Kevin Schutz; Jay R Hesselberth; Stanley Fields
Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates.
RNA (New York, N.Y.) 2010;16(3):621-31.
2009: Jay R Hesselberth; Xiaoyu Chen; Zhihong Zhang; Peter J Sabo; Richard Sandstrom; Alex P Reynolds; Robert E Thurman; Shane Neph; Michael S Kuehn; William S Noble; Stanley Fields; John A Stamatoyannopoulos
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
Nature methods 2009;6(4):283-9.
2007: Bradley Hall; Jay R Hesselberth; Andrew D Ellington
Computational selection of nucleic acid biosensors via a slip structure model.
Biosensors & bioelectronics 2007;22(9-10):1939-47.
2007: Zhihong Zhang; Jay R Hesselberth; Stanley Fields
Genome-wide identification of spliced introns using a tiling microarray.
Genome research 2007;17(4):503-9.
2006: Victoria Brown; Rachel A Brown; Adrian Ozinsky; Jay R Hesselberth; Stanley Fields
Binding specificity of Toll-like receptor cytoplasmic domains.
European journal of immunology 2006;36(3):742-53.
2006: Jay R Hesselberth; John P Miller; Anna Golob; Jason E Stajich; Gregory A Michaud; Stanley Fields
Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.
Genome biology 2006;7(4):R30.
2005: Douglas J LaCount; Marissa Vignali; Rakesh Chettier; Amit R Phansalkar; Russell Bell; Jay R Hesselberth; Lori W Schoenfeld; Irene Ota; Sudhir Sahasrabudhe; Cornelia Kurschner; Stanley Fields; Robert E Hughes
A protein interaction network of the malaria parasite Plasmodium falciparum.
Nature 2005;438(7064):103-7.
2004: Jennifer F Lee; Jay R Hesselberth; Lauren Ancel Meyers; Andrew D Ellington
Aptamer database.
Nucleic acids research 2004;32(Database issue):D95-100.
2003: Jay R Hesselberth; Michael P Robertson; Scott M Knudsen; Andrew D Ellington
Simultaneous detection of diverse analytes with an aptazyme ligase array.
Analytical biochemistry 2003;312(2):106-12.
2002: Jay R Hesselberth; Andrew D Ellington
A (ribo) switch in the paradigms of genetic regulation.
Nature structural biology 2002;9(12):891-3.
2002: J Colin Cox; Andrew Hayhurst; Jay R Hesselberth; Travis S Bayer; george Georgiou; Andrew D Ellington
Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer.
Nucleic acids research 2002;30(20):e108.
2001: Michael P Robertson; Jay R Hesselberth; Andrew D Ellington
Optimization and optimality of a short ribozyme ligase that joins non-Watson-Crick base pairings.
RNA (New York, N.Y.) 2001;7(4):513-23.
2000: Jay R Hesselberth; Michael P Robertson; S Jhaveri; Andrew D Ellington
In vitro selection of nucleic acids for diagnostic applications.
Journal of biotechnology 2000;74(1):15-25.
2000: Jay R Hesselberth; D Miller; Jon D Robertus; Andrew D Ellington
In vitro selection of RNA molecules that inhibit the activity of ricin A-chain.
The Journal of biological chemistry 2000;275(7):4937-42.