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Hirohiko Hirochika

Research Profile

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Chemicals & Drugs

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Genes & Molecular Sequences

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Mutagenesis, Insertional

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Cloning, Molecular

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TOP 3
Hui Chen; Hirohiko Hirochika; Kappei Kobayashi; Akio Miyao; Naoto Yamaoka; Masamichi Nishiguchi
Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice.
Naoki Yokotani; Hirohiko Hirochika; Takanari Ichikawa; Masaki Iwabuchi; Youichi Kondou; Minami Matsui; Kenji Oda
Role of the rice transcription factor JAmyb in abiotic stress response.
Shu-Yi Yang; Doris Rentsch; Nicolas Salamin; Venkatesan Sundaresan; Sheryl Catausan; Mette Grønlund; Marianne Suter Grotemeyer; Sigrid Heuer; Hirohiko Hirochika; Iver Jakobsen; Chellian Santhosh Kumar; Nicolas Mattes; Akio Miyao; Uta Paszkowski
Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the phosphate transporter1 gene family.

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All Publications

2013: Hui Chen; Hirohiko Hirochika; Kappei Kobayashi; Akio Miyao; Naoto Yamaoka; Masamichi Nishiguchi
Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice.
PloS one 2013;8(1):e55252.
2013: Naoki Yokotani; Hirohiko Hirochika; Takanari Ichikawa; Masaki Iwabuchi; Youichi Kondou; Minami Matsui; Kenji Oda
Role of the rice transcription factor JAmyb in abiotic stress response.
Journal of plant research 2013;126(1):131-9.
2012: Shu-Yi Yang; Doris Rentsch; Nicolas Salamin; Venkatesan Sundaresan; Sheryl Catausan; Mette Grønlund; Marianne Suter Grotemeyer; Sigrid Heuer; Hirohiko Hirochika; Iver Jakobsen; Chellian Santhosh Kumar; Nicolas Mattes; Akio Miyao; Uta Paszkowski
Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the phosphate transporter1 gene family.
The Plant cell 2012;24(10):4236-51.
2012: Fumiaki Hirose; Noritoshi Inagaki; Yuji Kamiya; Akio Miyao; Atsushi Hanada; Hirohiko Hirochika; Shinjiro Yamaguchi; Makoto Takano
Cryptochrome and phytochrome cooperatively but independently reduce active gibberellin content in rice seedlings under light irradiation.
Plant & cell physiology 2012;53(9):1570-82.
2012: Haruyasu Hamada; Hirohiko Hirochika; Masahiro Kiyoduka; Jinichiro Koga; Tomoko Koyano; Takamitsu Kurusu; Akio Miyao; Yoshiyuki Murata; Hiroshi Nokajima; Kazunori Okada; Eiji Okuma; Hikaru Saji; Yoshimi Sugiyama; Hisakazu Yamane; Kazuyuki Kuchitsu
Regulation of a proteinaceous elicitor-induced Ca2+ influx and production of phytoalexins by a putative voltage-gated cation channel, OsTPC1, in cultured rice cells.
The Journal of biological chemistry 2012;287(13):9931-9.
2011: Tomoyuki Konishi; Yasumasa Miyazaki; Shinobu Satoh; Akira Takahashi; Tsutomu Aohara; Noriko Hayashi; Hirohiko Hirochika; Tomohiro Igasaki; Hiroaki Iwai; Tadashi Ishii
Down-regulation of UDP-arabinopyranose mutase reduces the proportion of arabinofuranose present in rice cell walls.
Phytochemistry 2011;72(16):1962-8.
2011: Mieko Higuchi-Takeuchi; Hirohiko Hirochika; Takanari Ichikawa; Mika Kawashima; Youichi Kondou; Keiko Matsui; Masaki Mori; Kintake Sonoike; Yukako Hasegawa; Minami Matsui
Functional analysis of two isoforms of leaf-type ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis.
Plant physiology 2011;157(1):96-108.
2011: Takamitsu Kurusu; Haruyasu Hamada; Yoshimi Sugiyama; Toshikazu Yagala; Yasuhiro Kadota; Takuya Furuichi; Teruyuki Hayashi; Kenji Umemura; Setsuko Komatsu; Akio Miyao; Hirohiko Hirochika; Kazuyuki Kuchitsu
Negative feedback regulation of microbe-associated molecular pattern-induced cytosolic Ca2+ transients by protein phosphorylation.
Journal of plant research 2011;124(3):415-24.
2011: Joseph G Dubouzet; Satoru Maeda; Shoji Sugano; Miki Ohtake; Nagao Hayashi; Takanari Ichikawa; Youichi Kondou; Hirofumi Kuroda; Yoko Horii; Minami Matsui; Kenji Oda; Hirohiko Hirochika; Hiroshi Takatsuji; Masaki Mori
Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice.
Plant biotechnology journal 2011;9(4):466-85.
2011: Raman Babu; Chang-Jie Jiang; Xin Xu; Kameswara Rao Kottapalli; Hiroshi Takatsuji; Akio Miyao; Hirohiko Hirochika; Shinji Kawasaki
Isolation, fine mapping and expression profiling of a lesion mimic genotype, spl(NF4050-8) that confers blast resistance in rice.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2011;122(4):831-54.
2011: Yoshiaki Nagamura; Baltazar A Antonio; Yutaka Sato; Akio Miyao; Nobukazu Namiki; Jun-ichi Yonemaru; Hiroshi Minami; Kaori Kamatsuki; Kan Shimura; Yuji Shimizu; Hirohiko Hirochika
Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.
Plant & cell physiology 2011;52(2):230-7.
2011: Tetsuya Sakurai; Youichi Kondou; Kenji Akiyama; Atsushi Kurotani; Mieko Higuchi; Takanari Ichikawa; Hirofumi Kuroda; Miyako Kusano; Masaki Mori; Tsutomu Saitou; Hitoshi Sakakibara; Shoji Sugano; Makoto Suzuki; Hideki Takahashi; Shinya Takahashi; Hiroshi Takatsuji; Naoki Yokotani; Takeshi Yoshizumi; Kazuki Saito; Kazuo Shinozaki; Kenji Oda; Hirohiko Hirochika; Minami Matsui
RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function.
Plant & cell physiology 2011;52(2):265-73.
2011: Daisuke Ogawa; Kiyomi Abe; Akio Miyao; Mikiko Kojima; Hitoshi Sakakibara; Megumi Mizutani; Haruka Morita; Yosuke Toda; Tokunori Hobo; Yutaka Sato; Tsukaho Hattori; Hirohiko Hirochika; Shin Takeda
RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice.
Nature communications 2011;2():278.
2011: Ken-Ichi Nonomura; Mitsugu Eiguchi; Mutsuko Nakano; Kazuya Takashima; Norio Komeda; Satoshi Fukuchi; Saori Miyazaki; Akio Miyao; Hirohiko Hirochika; Nori Kurata
A novel RNA-recognition-motif protein is required for premeiotic G1/S-phase transition in rice (Oryza sativa L.).
PLoS genetics 2011;7(1):e1001265.
2011: Yutaka Sato; Baltazar A Antonio; Nobukazu Namiki; Ritsuko Motoyama; Kazuhiko Sugimoto; Hinako Takehisa; Hiroshi Minami; Kaori Kamatsuki; Makoto Kusaba; Hirohiko Hirochika; Yoshiaki Nagamura
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice.
BMC plant biology 2011;11():10.
2011: Takayuki Asano; Makoto Hakata; Himidetsu Nakamura; Naohiro Aoki; Setsuko Komatsu; Hiroaki Ichikawa; Hirohiko Hirochika; Ryu Ohsugi
Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice.
Plant molecular biology 2011;75(1-2):179-91.
2011: Yutaka Sato; Baltazar A Antonio; Nobukazu Namiki; Hinako Takehisa; Hiroshi Minami; Kaori Kamatsuki; Kazuhiko Sugimoto; Yuji Shimizu; Hirohiko Hirochika; Yoshiaki Nagamura
RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions.
Nucleic acids research 2011;39(Database issue):D1141-8.
2011: Naoki Yokotani; Mieko Higuchi; Youichi Kondou; Takanari Ichikawa; Masaki Iwabuchi; Hirohiko Hirochika; Minami Matsui; Kenji Oda
A novel chloroplast protein, CEST induces tolerance to multiple environmental stresses and reduces photooxidative damage in transgenic Arabidopsis.
Journal of experimental botany 2011;62(2):557-69.
2010: Mitsuko Kishi-Kaboshi; Akira Takahashi; Hirohiko Hirochika
MAMP-responsive MAPK cascades regulate phytoalexin biosynthesis.
Plant signaling & behavior 2010;5(12):1653-6.
2010: Hidenori Matsui; Akio Miyao; Akira Takahashi; Hirohiko Hirochika
Pdk1 kinase regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice.
Plant & cell physiology 2010;51(12):2082-91.
2010: Hidenori Matsui; Muneo Yamazaki; Mitsuko Kishi-Kaboshi; Akira Takahashi; Hirohiko Hirochika
AGC kinase OsOxi1 positively regulates basal resistance through suppression of OsPti1a-mediated negative regulation.
Plant & cell physiology 2010;51(10):1731-44.
2010: Tatsuro Hirose; Zujian Zhang; Akio Miyao; Hirohiko Hirochika; Ryu Ohsugi; Tomio Terao
Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected.
Journal of experimental botany 2010;61(13):3639-46.
2010: Mitsuko Kishi-Kaboshi; Kazunori Okada; Leona Kurimoto; Shinya Murakami; Toshiaki Umezawa; Naoto Shibuya; Hisakazu Yamane; Akio Miyao; Hiroshi Takatsuji; Akira Takahashi; Hirohiko Hirochika
A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis.
The Plant journal : for cell and molecular biology 2010;63(4):599-612.
2010: Takamitsu Kurusu; Jumpei Hamada; Hiroshi Nokajima; Youichiro Kitagawa; Masahiro Kiyoduka; Akira Takahashi; Shigeru Hanamata; Ryoko Ohno; Teruyuki Hayashi; Kazunori Okada; Jinichiro Koga; Hirohiko Hirochika; Hisakazu Yamane; Kazuyuki Kuchitsu
Regulation of microbe-associated molecular pattern-induced hypersensitive cell death, phytoalexin production, and defense gene expression by calcineurin B-like protein-interacting protein kinases, OsCIPK14/15, in rice cultured cells.
Plant physiology 2010;153(2):678-92.
2010: Kazuhiko Sugimoto; Yoshinobu Takeuchi; Kaworu Ebana; Akio Miyao; Hirohiko Hirochika; Naho Hara; Kanako Ishiyama; Masatomo Kobayashi; Yoshinori Ban; Tsukaho Hattori; Masahiro Yano
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(13):5792-7.
2010: Eigo Fukai; Yosuke Umehara; Shusei Sato; Makoto Endo; Hiroshi Kouchi; Makoto Hayashi; Jens Stougaard; Hirohiko Hirochika
Derepression of the plant Chromovirus LORE1 induces germline transposition in regenerated plants.
PLoS genetics 2010;6(3):e1000868.
2010: Akira Takahashi; Nagao Hayashi; Akio Miyao; Hirohiko Hirochika
Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging.
BMC plant biology 2010;10():175.
2010: Kenji Asano; Akio Miyao; Hirohiko Hirochika; Hidemi Kitano; Makoto Matsuoka; Motoyuki Ashikari
SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice.
Proceedings of the Japan Academy. Series B, Physical and biological sciences 2010;86(3):265-73.
2010: Doris Albinsky; Miyako Kusano; Mieko Higuchi; Naomi Hayashi; Makoto Kobayashi; Atsushi Fukushima; Masaki Mori; Takanari Ichikawa; Keiko Matsui; Hirofumi Kuroda; Yoko Horii; Yuko Tsumoto; Hitoshi Sakakibara; Hirohiko Hirochika; Minami Matsui; Kazuki Saito
Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism.
Molecular plant 2010;3(1):125-42.
2010: Kaoru Kobayashi; Masahiko Maekawa; Akio Miyao; Hirohiko Hirochika; Junko Kyozuka
PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice.
Plant & cell physiology 2010;51(1):47-57.
2009: Himidetsu Nakamura; Masayuki Muramatsu; Makoto Hakata; Osamu Ueno; Yoshiaki Nagamura; Hirohiko Hirochika; Makoto Takano; Hiroaki Ichikawa
Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells.
Plant & cell physiology 2009;50(11):1933-49.
2009: Naoki Yokotani; Takanari Ichikawa; Youichi Kondou; Satoru Maeda; Masaki Iwabuchi; Masaki Mori; Hirohiko Hirochika; Minami Matsui; Kenji Oda
Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis.
Plant molecular biology 2009;71(4-5):391-402.
2009: Shinnosuke Ohmori; Mayumi Kimizu; Maiko Sugita; Akio Miyao; Hirohiko Hirochika; Eiji Uchida; Yasuo Nagato; Hitoshi Yoshida
MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.
The Plant cell 2009;21(10):3008-25.
2009: Shuichi Fukuoka; Norikuni Saka; Hironori Koga; Kazuko Ono; Takehiko Shimizu; Kaworu Ebana; Nagao Hayashi; Akira Takahashi; Hirohiko Hirochika; Kazutoshi Okuno; Masahiro Yano
Loss of function of a proline-containing protein confers durable disease resistance in rice.
Science (New York, N.Y.) 2009;325(5943):998-1001.
2009: Naoki Yokotani; Takanari Ichikawa; Youichi Kondou; Minami Matsui; Hirohiko Hirochika; Masaki Iwabuchi; Kenji Oda
Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis.
Planta 2009;229(5):1065-75.
2009: Motoyasu Yoshii; Takumi Shimizu; Muneo Yamazaki; Takahiko Higashi; Akio Miyao; Hirohiko Hirochika; Toshihiro Omura
Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus.
The Plant journal : for cell and molecular biology 2009;57(4):615-25.
2009: Naoko Fujita; Yoshiko Toyosawa; Yoshinori Utsumi; Toshiyuki Higuchi; Isao Hanashiro; Akira Ikegami; Sayuri Akuzawa; Mayumi Yoshida; Akiko Mori; Kotaro Inomata; Rumiko Itoh; Akio Miyao; Hirohiko Hirochika; Hikaru Satoh; Yasunori Nakamura
Characterization of pullulanase (PUL)-deficient mutants of rice (Oryza sativa L.) and the function of PUL on starch biosynthesis in the developing rice endosperm.
Journal of experimental botany 2009;60(3):1009-23.
2009: Arjun Krishnan; Emmanuel Guiderdoni; Gynheung An; Yue-ie C Hsing; Chang-deok Han; Myung Chul Lee; Su-May Yu; Narayana Upadhyaya; Srinivasan Ramachandran; Qifa Zhang; Venkatesan Sundaresan; Hirohiko Hirochika; Hei Leung; Andy Pereira
Mutant resources in rice for functional genomics of the grasses.
Plant physiology 2009;149(1):165-70.
2009: Takumi Shimizu; Motoyasu Yoshii; Taiyun Wei; Hirohiko Hirochika; Toshihiro Omura
Silencing by RNAi of the gene for Pns12, a viroplasm matrix protein of Rice dwarf virus, results in strong resistance of transgenic rice plants to the virus.
Plant biotechnology journal 2009;7(1):24-32.
2008: Eigo Fukai; Alicja Dorota Dobrowolska; Lene Heegaard Madsen; Esben Bjørn Madsen; Yosuke Umehara; Hiroshi Kouchi; Hirohiko Hirochika; Jens Stougaard
Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus.
Plant molecular biology 2008;68(6):653-63.
2008: Caroline Gutjahr; Mari Banba; Vincent Croset; Kyungsook An; Akio Miyao; Gynheung An; Hirohiko Hirochika; Haruko Imaizumi-Anraku; Uta Paszkowski
Arbuscular mycorrhiza-specific signaling in rice transcends the common symbiosis signaling pathway.
The Plant cell 2008;20(11):2989-3005.
2008: Mari Banba; Caroline Gutjahr; Akio Miyao; Hirohiko Hirochika; Uta Paszkowski; Hiroshi Kouchi; Haruko Imaizumi-Anraku
Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway.
Plant & cell physiology 2008;49(11):1659-71.
2008: Hui Chen; Partha P Samadder; Yoshikazu Tanaka; Tatsuya Ohira; Hisato Okuizumi; Naoto Yamaoka; Akio Miyao; Hirohiko Hirochika; Takayuki Ohira; Suguru Tsuchimoto; Hisako Ohtsubo; Masamichi Nishiguchi
OsRecQ1, a QDE-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for double-stranded RNA.
The Plant journal : for cell and molecular biology 2008;56(2):274-86.
2008: Naoki Yokotani; Takanari Ichikawa; Youichi Kondou; Minami Matsui; Hirohiko Hirochika; Masaki Iwabuchi; Kenji Oda
Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis.
Planta 2008;227(5):957-67.
2007: Himidetsu Nakamura; Makoto Hakata; Kou AMANO; Akio Miyao; Naoko Toki; Mariko Kajikawa; Jinhuan Pang; Naokuni Higashi; Shigeko Ando; Seiichi Toki; Miki Fujita; Akiko Enju; Motoaki Seki; Miki Nakazawa; Takanari Ichikawa; Kazuo Shinozaki; Minami Matsui; Yoshiaki Nagamura; Hirohiko Hirochika; Hiroaki Ichikawa
A genome-wide gain-of function analysis of rice genes using the FOX-hunting system.
Plant molecular biology 2007;65(4):357-71.
2007: Yuzuru Tozawa; Masayoshi Teraishi; Tadamasa Sasaki; Kintake Sonoike; Yoshitaka Nishiyama; Mitsuhiro Itaya; Akio Miyao; Hirohiko Hirochika
The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts.
The Plant journal : for cell and molecular biology 2007;52(1):124-32.
2007: Akira Takahashi; Ganesh Kumar Agrawal; Muneo Yamazaki; Katsura Onosato; Akio Miyao; Tsutomu Kawasaki; Ko Shimamoto; Hirohiko Hirochika
Rice Pti1a negatively regulates RAR1-dependent defense responses.
The Plant cell 2007;19(9):2940-51.
2007: Ken-Ichi Nonomura; Akane Morohoshi; Mutsuko Nakano; Mitsugu Eiguchi; Akio Miyao; Hirohiko Hirochika; Nori Kurata
A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.
The Plant cell 2007;19(8):2583-94.
2007: Naoko Fujita; Mayumi Yoshida; Tomonori Kondo; Kaori Saito; Yoshinori Utsumi; Takashi Tokunaga; Aiko Nishi; Hikaru Satoh; Jin-Hee Park; Jay-Lin Jane; Akio Miyao; Hirohiko Hirochika; Yasunori Nakamura
Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endosperm.
Plant physiology 2007;144(4):2009-23.
2007: Tomoaki Horie; Alex Costa; Tae-Houn Kim; Min Jung Han; Rie Horie; Ho-Yin Leung; Akio Miyao; Hirohiko Hirochika; Gynheung An; Julian I Schroeder
Rice OsHKT2;1 transporter mediates large Na+ influx component into K+-starved roots for growth.
The EMBO journal 2007;26(12):3003-14.
2007: Makoto Kusaba; Hisashi Ito; Ryouhei Morita; Shuichi Iida; Yutaka Sato; Masaru Fujimoto; Shinji Kawasaki; Ryouichi Tanaka; Hirohiko Hirochika; Minoru Nishimura; Ayumi Tanaka
Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
The Plant cell 2007;19(4):1362-75.
2007: Masaki Mori; Chikako Tomita; Kazuhiko Sugimoto; Morifumi Hasegawa; Nagao Hayashi; Joseph G Dubouzet; Hirokazu Ochiai; Hitoshi Sekimoto; Hirohiko Hirochika; Shoshi Kikuchi
Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice.
Plant molecular biology 2007;63(6):847-60.
2007: Akio Miyao; Yukimoto Iwasaki; Hiroaki Kitano; Jun-Ichi Itoh; Masahiko Maekawa; Kazumasa Murata; Osamu Yatou; Yasuo Nagato; Hirohiko Hirochika
A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes.
Plant molecular biology 2007;63(5):625-35.
2007: Shinpei Katou; Katsushi Kuroda; Shigemi Seo; Yuki Yanagawa; Tomohiko Tsuge; Muneo Yamazaki; Akio Miyao; Hirohiko Hirochika; Yuko Ohashi
A calmodulin-binding mitogen-activated protein kinase phosphatase is induced by wounding and regulates the activities of stress-related mitogen-activated protein kinases in rice.
Plant & cell physiology 2007;48(2):332-44.
2007: Hiroaki Saika; Masanori Okamoto; Kentaro Miyoshi; Toshio Kushiro; Shoko Shinoda; Yusuke Jikumaru; Masaru Fujimoto; Taku Arikawa; Hirokazu Takahashi; Miho Ando; Arimura Shin-ichi; Akio Miyao; Hirohiko Hirochika; Yuji Kamiya; nobuhiro tsutsumi; Eiji Nambara; Mikio Nakazono
Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice.
Plant & cell physiology 2007;48(2):287-98.
2007: Yoshiki Kubota; Akio Miyao; Hirohiko Hirochika; Yuzuru Tozawa; Hiroyuki Yasuda; Yuichi Tsunoyama; Yasuo Niwa; Sousuke Imamura; Makoto Shirai; Munehiko Asayama
Two novel nuclear genes, OsSIG5 and OsSIG6, encoding potential plastid sigma factors of RNA polymerase in rice: tissue-specific and light-responsive gene expression.
Plant & cell physiology 2007;48(1):186-92.
2006: Chaoyang Cheng; Masaaki Daigen; Hirohiko Hirochika
Epigenetic regulation of the rice retrotransposon Tos17.
Molecular genetics and genomics : MGG 2006;276(4):378-90.
2006: Naoko Fujita; Mayumi Yoshida; Noriko Asakura; Takashi Ohdan; Akio Miyao; Hirohiko Hirochika; Yasunori Nakamura
Function and characterization of starch synthase I using mutants in rice.
Plant physiology 2006;140(3):1070-84.
2006: Takahiro Yamaguchi; Dong Yeon Lee; Akio Miyao; Hirohiko Hirochika; Gynheung An; Hiro-Yuki Hirano
Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa.
The Plant cell 2006;18(1):15-28.
2005: Makoto Takano; Noritoshi Inagaki; Xianzhi Xie; Natsu Yuzurihara; Fukiko Hihara; Toru Ishizuka; Masahiro Yano; Minoru Nishimura; Akio Miyao; Hirohiko Hirochika; Tomoko Shinomura
Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice.
The Plant cell 2005;17(12):3311-25.
2005: Ganesh Kumar Agrawal; Kiyomi Abe; Muneo Yamazaki; Akio Miyao; Hirohiko Hirochika
Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene.
Plant molecular biology 2005;59(1):125-35.
2005: Satoshi Kikui; Takayuki Sasaki; Masahiko Maekawa; Akio Miyao; Hirohiko Hirochika; Hideaki Matsumoto; Yoko Yamamoto
Physiological and genetic analyses of aluminium tolerance in rice, focusing on root growth during germination.
Journal of inorganic biochemistry 2005;99(9):1837-44.
2005: Gudrun Böhmdorfer; Ivo L Hofacker; Karin Garber; Srecko Jelenic; Viktoria Nizhynska; Hirohiko Hirochika; Peter F Stadler; Andreas Bachmair
Unorthodox mRNA start site to extend the highly structured leader of retrotransposon Tto1 mRNA increases transposition rate.
RNA (New York, N.Y.) 2005;11(8):1181-91.
2005: Bakul Rani Debi; Tory Chhun; Shin Taketa; Seiji Tsurumi; Kai Xia; Akio Miyao; Hirohiko Hirochika; Masahiko Ichii
Defects in root development and gravity response in the aem1 mutant of rice are associated with reduced auxin efflux.
Journal of plant physiology 2005;162(6):678-85.
2005: Takamitsu Kurusu; Toshikazu Yagala; Akio Miyao; Hirohiko Hirochika; Kazuyuki Kuchitsu
Identification of a putative voltage-gated Ca2+ channel as a key regulator of elicitor-induced hypersensitive cell death and mitogen-activated protein kinase activation in rice.
The Plant journal : for cell and molecular biology 2005;42(6):798-809.
2005: Sichul Lee; Jin-Hong Kim; Eun Sang Yoo; Choon-Hwan Lee; Hirohiko Hirochika; Gynheung An
Differential regulation of chlorophyll a oxygenase genes in rice.
Plant molecular biology 2005;57(6):805-18.
2004: Takamitsu Kurusu; Yasuhiro Sakurai; Akio Miyao; Hirohiko Hirochika; Kazuyuki Kuchitsu
Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice.
Plant & cell physiology 2004;45(6):693-702.
2004: Shozo Kobayashi; Nami Goto-Yamamoto; Hirohiko Hirochika
Retrotransposon-induced mutations in grape skin color.
Science (New York, N.Y.) 2004;304(5673):982.
2004: Tomoaki Sakamoto; Koutarou Miura; Hironori Itoh; Tomoko Tatsumi; Miyako Ueguchi-Tanaka; Kanako Ishiyama; Masatomo Kobayashi; Ganesh Kumar Agrawal; Shin Takeda; Kiyomi Abe; Akio Miyao; Hirohiko Hirochika; Hidemi Kitano; Motoyuki Ashikari; Makoto Matsuoka
An overview of gibberellin metabolism enzyme genes and their related mutants in rice.
Plant physiology 2004;134(4):1642-53.
2004: Ken-Ichi Nonomura; Mutsuko Nakano; Toshiyuki Fukuda; Mitsugu Eiguchi; Akio Miyao; Hirohiko Hirochika; Nori Kurata
The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis.
The Plant cell 2004;16(4):1008-20.
2004: Ken-Ichi Nonomura; Mutsuko Nakano; K Murata; K Miyoshi; Mitsugu Eiguchi; Akio Miyao; Hirohiko Hirochika; Nori Kurata
An insertional mutation in the rice PAIR2 gene, the ortholog of Arabidopsis ASY1, results in a defect in homologous chromosome pairing during meiosis.
Molecular genetics and genomics : MGG 2004;271(2):121-9.
2004: Hirohiko Hirochika; Emmanuel Guiderdoni; Gynheung An; Yue-Ie Hsing; Moo Young Eun; Chang-deok Han; Narayana Upadhyaya; Srinivasan Ramachandran; Qifa Zhang; Andy Pereira; Venkatesan Sundaresan; Hei Leung
Rice mutant resources for gene discovery.
Plant molecular biology 2004;54(3):325-34.
2004: Atsunori Fukuda; Atsuko Nakamura; Akemi Tagiri; Hiroshi Tanaka; Akio Miyao; Hirohiko Hirochika; Yoshiyuki Tanaka
Function, intracellular localization and the importance in salt tolerance of a vacuolar Na(+)/H(+) antiporter from rice.
Plant & cell physiology 2004;45(2):146-59.
2004: Andreas Bachmair; Karin Garber; Shin Takeda; Kazuhiko Sugimoto; Tetsuji Kakutani; Hirohiko Hirochika
Biochemical analysis of long terminal repeat retrotransposons.
Methods in molecular biology (Clifton, N.J.) 2004;260():73-82.
2004: Miyuki Kaneko; Yoshiaki Inukai; Miyako Ueguchi-Tanaka; Hironori Itoh; Takeshi Izawa; Yuhko Kobayashi; Tsukaho Hattori; Akio Miyao; Hirohiko Hirochika; Motoyuki Ashikari; Makoto Matsuoka
Loss-of-function mutations of the rice GAMYB gene impair alpha-amylase expression in aleurone and flower development.
The Plant cell 2004;16(1):33-44.
2003: Kazuhiko Sugimoto; Shin Takeda; Hirohiko Hirochika
Transcriptional activation mediated by binding of a plant GATA-type zinc finger protein AGP1 to the AG-motif (AGATCCAA) of the wound-inducible Myb gene NtMyb2.
The Plant journal : for cell and molecular biology 2003;36(4):550-64.
2003: Katsuyuki Tanaka; Kazumasa Murata; Muneo Yamazaki; Katsura Onosato; Akio Miyao; Hirohiko Hirochika
Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.
Plant physiology 2003;133(1):73-83.
2003: Akio Miyao; Katsuyuki Tanaka; Kazumasa Murata; Hiromichi Sawaki; Shin Takeda; Kiyomi Abe; Yoriko Shinozuka; Katsura Onosato; Hirohiko Hirochika
Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.
The Plant cell 2003;15(8):1771-80.
2003: Ken-Ichi Nonomura; Kazumaru Miyoshi; Mitsugu Eiguchi; Tadzunu Suzuki; Akio Miyao; Hirohiko Hirochika; Nori Kurata
The MSP1 gene is necessary to restrict the number of cells entering into male and female sporogenesis and to initiate anther wall formation in rice.
The Plant cell 2003;15(8):1728-39.
2003: Ki-Hong Jung; Junghe Hur; Choong-Hwan Ryu; Youngju Choi; Yong-Yoon Chung; Akio Miyao; Hirohiko Hirochika; Gynheung An
Characterization of a rice chlorophyll-deficient mutant using the T-DNA gene-trap system.
Plant & cell physiology 2003;44(5):463-72.
2003: Ning Jiang; Zhirong Bao; Xiaoyu Zhang; Hirohiko Hirochika; Sean R Eddy; Susan R McCouch; Susan R Wessler
An active DNA transposon family in rice.
Nature 2003;421(6919):163-7.
2002: Masaki Mori; Takahito Nomura; Hisako Ooka; Masumi Ishizaka; Takao Yokota; Kazuhiko Sugimoto; Ken Okabe; Hideyuki Kajiwara; Kouji Satoh; Koji Yamamoto; Hirohiko Hirochika; Shoshi Kikuchi
Isolation and characterization of a rice dwarf mutant with a defect in brassinosteroid biosynthesis.
Plant physiology 2002;130(3):1152-61.
2002: Akira Ikeda; Yutaka Sonoda; Paolo Vernieri; Pierdomenico Perata; Hirohiko Hirochika; Junji Yamaguchi
The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level.
Plant & cell physiology 2002;43(9):974-9.
2002: Yukihiro Ito; Hirohiko Hirochika; Nori Kurata
Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice.
Gene 2002;288(1-2):41-7.
2001: Shin Takeda; K Sugimoto; Tetsuji Kakutani; Hirohiko Hirochika
Linear DNA intermediates of the Tto1 retrotransposon in Gag particles accumulated in stressed tobacco and Arabidopsis thaliana.
The Plant journal : for cell and molecular biology 2001;28(3):307-17.
2001: Muneo Yamazaki; H Tsugawa; Akio Miyao; M Yano; J Wu; S Yamamoto; T Matsumoto; T Sasaki; Hirohiko Hirochika
The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets.
Molecular genetics and genomics : MGG 2001;265(2):336-44.
2001: Hirohiko Hirochika
Contribution of the Tos17 retrotransposon to rice functional genomics.
Current opinion in plant biology 2001;4(2):118-22.
2001: Makoto Takano; H Kanegae; Tomoko Shinomura; Akio Miyao; Hirohiko Hirochika; M Furuya
Isolation and characterization of rice phytochrome A mutants.
The Plant cell 2001;13(3):521-34.
2001: Ganesh Kumar Agrawal; Muneo Yamazaki; M Kobayashi; R Hirochika; Akio Miyao; Hirohiko Hirochika
Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.
Plant physiology 2001;125(3):1248-57.
2000: Kazuhiko Sugimoto; Shin Takeda; Hirohiko Hirochika
MYB-related transcription factor NtMYB2 induced by wounding and elicitors is a regulator of the tobacco retrotransposon Tto1 and defense-related genes.
The Plant cell 2000;12(12):2511-2528.
2000: H Okamoto; Hirohiko Hirochika
Efficient insertion mutagenesis of Arabidopsis by tissue culture-induced activation of the tobacco retrotransposon Tto1.
The Plant journal : for cell and molecular biology 2000;23(2):291-304.
2000: Hirohiko Hirochika; H Okamoto; Tetsuji Kakutani
Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation.
The Plant cell 2000;12(3):357-69.
1999: Shin Takeda; Kazuhiko Sugimoto; H Otsuki; Hirohiko Hirochika
A 13-bp cis-regulatory element in the LTR promoter of the tobacco retrotransposon Tto1 is involved in responsiveness to tissue culture, wounding, methyl jasmonate and fungal elicitors.
The Plant journal : for cell and molecular biology 1999;18(4):383-93.
1999: Tetsuji Kakutani; K Munakata; E J Richards; Hirohiko Hirochika
Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana.
Genetics 1999;151(2):831-8.
1998: Shin Takeda; Kazuhiko Sugimoto; H Otsuki; Hirohiko Hirochika
Transcriptional activation of the tobacco retrotransposon Tto1 by wounding and methyl jasmonate.
Plant molecular biology 1998;36(3):365-76.
1997: T Matsumoto; N Nakashima; K Takase; Hirohiko Hirochika; H Mizuno
A mutation study of the DNA binding domain of human papillomavirus type11 E2 protein.
Journal of biochemistry 1997;121(1):138-44.
1996: Hirohiko Hirochika; Kazuhiko Sugimoto; Y Otsuki; H Tsugawa; M Kanda
Retrotransposons of rice involved in mutations induced by tissue culture.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(15):7783-8.
1996: Hirohiko Hirochika; H Otsuki; M Yoshikawa; Y Otsuki; Kazuhiko Sugimoto; Shin Takeda
Autonomous transposition of the tobacco retrotransposon Tto1 in rice.
The Plant cell 1996;8(4):725-34.
1996: I Mitsuhara; M Ugaki; Hirohiko Hirochika; M Ohshima; T Murakami; Y Gotoh; Y Katayose; S Nakamura; R Honkura; S Nishimiya; K Ueno; A Mochizuki; H Tanimoto; H Tsugawa; Y Otsuki; Y Ohashi
Efficient promoter cassettes for enhanced expression of foreign genes in dicotyledonous and monocotyledonous plants.
Plant & cell physiology 1996;37(1):49-59.
1995: Hirohiko Hirochika; H Otsuki
Extrachromosomal circular forms of the tobacco retrotransposon Tto1.
Gene 1995;165(2):229-32.
1994: Kazuhiko Sugimoto; Y Otsuki; S Saji; Hirohiko Hirochika
Transposition of the maize Ds element from a viral vector to the rice genome.
The Plant journal : for cell and molecular biology 1994;5(6):863-71.
1993: Hirohiko Hirochika
Activation of tobacco retrotransposons during tissue culture.
The EMBO journal 1993;12(6):2521-8.
1993: Hirohiko Hirochika; R Hirochika
Ty1-copia group retrotransposons as ubiquitous components of plant genomes.
Idengaku zasshi 1993;68(1):35-46.
1992: Hirohiko Hirochika; A Fukuchi; F Kikuchi
Retrotransposon families in rice.
Molecular & general genetics : MGG 1992;233(1-2):209-16.
1992: Hirohiko Hirochika
[Retroposons of plants].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1992;37(7):1060-6.
1991: Hirohiko Hirochika; K Hayashi
A new strategy to improve a cauliflower mosaic virus vector.
Gene 1991;105(2):239-41.
1988: M T Chin; R Hirochika; Hirohiko Hirochika; Thomas R Broker; Louise T Chow
Regulation of human papillomavirus type 11 enhancer and E6 promoter by activating and repressing proteins from the E2 open reading frame: functional and biochemical studies.
Journal of virology 1988;62(8):2994-3002.
1988: Hirohiko Hirochika; R Hirochika; Thomas R Broker; Louise T Chow
Functional mapping of the human papillomavirus type 11 transcriptional enhancer and its interaction with the trans-acting E2 proteins.
Genes & development 1988;2(1):54-67.
1987: Hirohiko Hirochika; Thomas R Broker; Louise T Chow
Enhancers and trans-acting E2 transcriptional factors of papillomaviruses.
Journal of virology 1987;61(8):2599-606.
1985: Hirohiko Hirochika; H Takatsuji; A Ubasawa; J E Ikeda
Site-specific deletion in cauliflower mosaic virus DNA: possible involvement of RNA splicing and reverse transcription.
The EMBO journal 1985;4(7):1673-80.