FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Viktor Hornak

Research Profile

Concepts & Ideas

Activities & Behaviors

Computer Simulation

Occupations

Thermodynamics

Procedures

Chemicals & Drugs

Co-author Network

Publications

TOP 3
Viktor Hornak; Shivani Ahuja; Markus Eilers; Joseph A Goncalves; Mordechai Sheves; Philip J Reeves; Steven O Smith
Light activation of rhodopsin: insights from molecular dynamics simulations guided by solid-state NMR distance restraints.
Kun Song; Viktor Hornak; Carlos de los Santos; Arthur P Grollman; Carlos Simmerling
Molecular mechanics parameters for the FapydG DNA lesion.
Prashen Chelikani; Viktor Hornak; Markus Eilers; Philip J Reeves; Steven O Smith; Uttam L RajBhandary; H Gobind Khorana
Role of group-conserved residues in the helical core of beta2-adrenergic receptor.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Viktor Hornak (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2010: Viktor Hornak; Shivani Ahuja; Markus Eilers; Joseph A Goncalves; Mordechai Sheves; Philip J Reeves; Steven O Smith
Light activation of rhodopsin: insights from molecular dynamics simulations guided by solid-state NMR distance restraints.
Journal of molecular biology 2010;396(3):510-27.
2008: Kun Song; Viktor Hornak; Carlos de los Santos; Arthur P Grollman; Carlos Simmerling
Molecular mechanics parameters for the FapydG DNA lesion.
Journal of computational chemistry 2008;29(1):17-23.
2007: Prashen Chelikani; Viktor Hornak; Markus Eilers; Philip J Reeves; Steven O Smith; Uttam L RajBhandary; H Gobind Khorana
Role of group-conserved residues in the helical core of beta2-adrenergic receptor.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(17):7027-32.
2007: Lauren Wickstrom; Yuan Bi; Viktor Hornak; Daniel P Raleigh; Carlos Simmerling
Reconciling the solution and X-ray structures of the villin headpiece helical subdomain: molecular dynamics simulations and double mutant cycles reveal a stabilizing cation-pi interaction.
Biochemistry 2007;46(12):3624-34.
2007: Daniel R Roe; Asim Okur; Lauren Wickstrom; Viktor Hornak; Carlos Simmerling
Secondary structure bias in generalized Born solvent models: comparison of conformational ensembles and free energy of solvent polarization from explicit and implicit solvation.
The journal of physical chemistry. B 2007;111(7):1846-57.
2007: Viktor Hornak; Carlos Simmerling
Targeting structural flexibility in HIV-1 protease inhibitor binding.
Drug discovery today 2007;12(3-4):132-8.
2006: Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian E Roitberg; Carlos Simmerling
Comparison of multiple Amber force fields and development of improved protein backbone parameters.
Proteins 2006;65(3):712-25.
2006: Melinda Layten; Viktor Hornak; Carlos Simmerling
The open structure of a multi-drug-resistant HIV-1 protease is stabilized by crystal packing contacts.
Journal of the American Chemical Society 2006;128(41):13360-1.
2006: Kun Song; Viktor Hornak; Carlos de los Santos; Arthur P Grollman; Carlos Simmerling
Computational analysis of the mode of binding of 8-oxoguanine to formamidopyrimidine-DNA glycosylase.
Biochemistry 2006;45(36):10886-94.
2006: Lauren Wickstrom; Asim Okur; Kun Song; Viktor Hornak; Daniel P Raleigh; Carlos Simmerling
The unfolded state of the villin headpiece helical subdomain: computational studies of the role of locally stabilized structure.
Journal of molecular biology 2006;360(5):1094-107.
2006: Evan Crocker; Markus Eilers; Shivani Ahuja; Viktor Hornak; Amiram Hirshfeld; Mordechai Sheves; Steven O Smith
Location of Trp265 in metarhodopsin II: implications for the activation mechanism of the visual receptor rhodopsin.
Journal of molecular biology 2006;357(1):163-72.
2006: Viktor Hornak; Asim Okur; Robert C Rizzo; Carlos Simmerling
HIV-1 protease flaps spontaneously close to the correct structure in simulations following manual placement of an inhibitor into the open state.
Journal of the American Chemical Society 2006;128(9):2812-3.
2006: Bradley Ford; Viktor Hornak; Holly Kleinman; Nicolas Nassar
Structure of a transient intermediate for GTP hydrolysis by ras.
Structure (London, England : 1993) 2006;14(3):427-36.
2006: Viktor Hornak; Asim Okur; Robert C Rizzo; Carlos Simmerling
HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(4):915-20.
2005: Xiaolin Cheng; Catherine Kelso; Viktor Hornak; Carlos de los Santos; Arthur P Grollman; Carlos Simmerling
Dynamic behavior of DNA base pairs containing 8-oxoguanine.
Journal of the American Chemical Society 2005;127(40):13906-18.
2005: Daniel R Roe; Viktor Hornak; Carlos Simmerling
Folding cooperativity in a three-stranded beta-sheet model.
Journal of molecular biology 2005;352(2):370-81.
2005: Markus Eilers; Viktor Hornak; Steven O Smith; James B Konopka
Comparison of class A and D G protein-coupled receptors: common features in structure and activation.
Biochemistry 2005;44(25):8959-75.
2005: Xiaolin Cheng; Guanglei Cui; Viktor Hornak; Carlos Simmerling
Modified replica exchange simulation methods for local structure refinement.
The journal of physical chemistry. B 2005;109(16):8220-30.
2004: Viktor Hornak; Carlos Simmerling
Development of softcore potential functions for overcoming steric barriers in molecular dynamics simulations.
Journal of molecular graphics & modelling 2004;22(5):405-13.
2003: Viktor Hornak; Carlos Simmerling
Generation of accurate protein loop conformations through low-barrier molecular dynamics.
Proteins 2003;51(4):577-90.
2003: Asim Okur; Bentley Strockbine; Viktor Hornak; Carlos Simmerling
Using PC clusters to evaluate the transferability of molecular mechanics force fields for proteins.
Journal of computational chemistry 2003;24(1):21-31.
2002: Brigitte Schobert; Jill R Cupp-Vickery; Viktor Hornak; Steven Smith; Janos K Lanyi
Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal.
Journal of molecular biology 2002;321(4):715-26.